|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
316-592 |
7.49e-43 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 159.69 E-value: 7.49e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 316 FEGHQAAVNAIQIF--GNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLVthtSGKSSVLYTGSSDHTIRCYNIK 393
Cdd:COG2319 116 LTGHTGAVRSVAFSpdGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAF---SPDGKLLASGSDDGTVRLWDLA 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 394 TRECMEQLQL-EDRVLCLhnRW----RTLYAGLANGTVVTFDIKNNKRQEIFECHGPRaVSCLATAQEGarKLLVVGSYD 468
Cdd:COG2319 193 TGKLLRTLTGhTGAVRSV--AFspdgKLLASGSADGTVRLWDLATGKLLRTLTGHSGS-VRSVAFSPDG--RLLASGSAD 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 469 CTISVRDARNGLLLRTLEGHSKTVLCMKVVND--LVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNI--LGKVMVT 544
Cdd:COG2319 268 GTVRLWDLATGELLRTLTGHSGGVNSVAFSPDgkLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFspDGKTLAS 347
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1907137037 545 ACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHK--SVIYTGCYDGSIQ 592
Cdd:COG2319 348 GSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPdgRTLASGSADGTVR 397
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
314-591 |
1.04e-42 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 155.96 E-value: 1.04e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 314 GSFEGHQAAVNAIQIF--GNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLvthTSGKSSVLYTGSSDHTIRCYN 391
Cdd:cd00200 3 RTLKGHTGGVTCVAFSpdGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA---ASADGTYLASGSSDKTIRLWD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 392 IKTRECMEQLQL-EDRVLCL--HNRWRTLYAGLANGTVVTFDIKNNKRQEIFECHgPRAVSCLATAQEGarKLLVVGSYD 468
Cdd:cd00200 80 LETGECVRTLTGhTSYVSSVafSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPDG--TFVASSSQD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 469 CTISVRDARNGLLLRTLEGHSKTVLCMKVVNDL--VFSGSSDQSVHAHNIHTGELVRIYKGHNHAVT--VVNILGKVMVT 544
Cdd:cd00200 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGekLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNsvAFSPDGYLLAS 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1907137037 545 ACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHKS--VIYTGCYDGSI 591
Cdd:cd00200 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDgkRLASGSADGTI 285
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
349-391 |
1.74e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.30 E-value: 1.74e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1907137037 349 SRKCVGVFEGHTSKVNCLLVthtSGKSSVLYTGSSDHTIRCYN 391
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAF---SPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
350-391 |
1.40e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 39.64 E-value: 1.40e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1907137037 350 RKCVGVFEGHTSKVNCLLVthtSGKSSVLYTGSSDHTIRCYN 391
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAF---SPDGKLLASGSDDGTVKVWD 39
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
316-592 |
7.49e-43 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 159.69 E-value: 7.49e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 316 FEGHQAAVNAIQIF--GNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLVthtSGKSSVLYTGSSDHTIRCYNIK 393
Cdd:COG2319 116 LTGHTGAVRSVAFSpdGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAF---SPDGKLLASGSDDGTVRLWDLA 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 394 TRECMEQLQL-EDRVLCLhnRW----RTLYAGLANGTVVTFDIKNNKRQEIFECHGPRaVSCLATAQEGarKLLVVGSYD 468
Cdd:COG2319 193 TGKLLRTLTGhTGAVRSV--AFspdgKLLASGSADGTVRLWDLATGKLLRTLTGHSGS-VRSVAFSPDG--RLLASGSAD 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 469 CTISVRDARNGLLLRTLEGHSKTVLCMKVVND--LVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNI--LGKVMVT 544
Cdd:COG2319 268 GTVRLWDLATGELLRTLTGHSGGVNSVAFSPDgkLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFspDGKTLAS 347
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1907137037 545 ACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHK--SVIYTGCYDGSIQ 592
Cdd:COG2319 348 GSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPdgRTLASGSADGTVR 397
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
314-591 |
1.04e-42 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 155.96 E-value: 1.04e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 314 GSFEGHQAAVNAIQIF--GNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLvthTSGKSSVLYTGSSDHTIRCYN 391
Cdd:cd00200 3 RTLKGHTGGVTCVAFSpdGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA---ASADGTYLASGSSDKTIRLWD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 392 IKTRECMEQLQL-EDRVLCL--HNRWRTLYAGLANGTVVTFDIKNNKRQEIFECHgPRAVSCLATAQEGarKLLVVGSYD 468
Cdd:cd00200 80 LETGECVRTLTGhTSYVSSVafSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPDG--TFVASSSQD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 469 CTISVRDARNGLLLRTLEGHSKTVLCMKVVNDL--VFSGSSDQSVHAHNIHTGELVRIYKGHNHAVT--VVNILGKVMVT 544
Cdd:cd00200 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGekLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNsvAFSPDGYLLAS 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1907137037 545 ACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHKS--VIYTGCYDGSI 591
Cdd:cd00200 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDgkRLASGSADGTI 285
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
315-592 |
2.29e-39 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 149.68 E-value: 2.29e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 315 SFEGHQAAVNAIQIF--GNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLVTHtSGKssVLYTGSSDHTIRCYNI 392
Cdd:COG2319 73 TLLGHTAAVLSVAFSpdGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSP-DGK--TLASGSADGTVRLWDL 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 393 KTRECMEQLQL-EDRVLCLhnRW----RTLYAGLANGTVVTFDIKNNKRQEIFECHgPRAVSCLATAQEGarKLLVVGSY 467
Cdd:COG2319 150 ATGKLLRTLTGhSGAVTSV--AFspdgKLLASGSDDGTVRLWDLATGKLLRTLTGH-TGAVRSVAFSPDG--KLLASGSA 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 468 DCTISVRDARNGLLLRTLEGHSKTVLCMKVVND--LVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNIL--GKVMV 543
Cdd:COG2319 225 DGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDgrLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSpdGKLLA 304
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1907137037 544 TACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIH--KSVIYTGCYDGSIQ 592
Cdd:COG2319 305 SGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSpdGKTLASGSDDGTVR 355
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
315-558 |
6.59e-38 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 145.82 E-value: 6.59e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 315 SFEGHQAAVNAIQIF--GNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLVthtSGKSSVLYTGSSDHTIRCYNI 392
Cdd:COG2319 157 TLTGHSGAVTSVAFSpdGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAF---SPDGKLLASGSADGTVRLWDL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 393 KTRECMEQLQL-EDRVLCLhnRW----RTLYAGLANGTVVTFDIKNNKRQEIFEcHGPRAVSCLATAQEGarKLLVVGSY 467
Cdd:COG2319 234 ATGKLLRTLTGhSGSVRSV--AFspdgRLLASGSADGTVRLWDLATGELLRTLT-GHSGGVNSVAFSPDG--KLLASGSD 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 468 DCTISVRDARNGLLLRTLEGHSKTVLCMKVVND--LVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNIL--GKVMV 543
Cdd:COG2319 309 DGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDgkTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSpdGRTLA 388
|
250
....*....|....*
gi 1907137037 544 TACLDKFVRVYELQS 558
Cdd:COG2319 389 SGSADGTVRLWDLAT 403
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
315-555 |
1.30e-36 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 139.01 E-value: 1.30e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 315 SFEGHQAAVNAIQI--FGNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLVTHtsgKSSVLYTGSSDHTIRCYNI 392
Cdd:cd00200 46 TLKGHTGPVRDVAAsaDGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP---DGRILSSSSRDKTIKVWDV 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 393 KTRECMEQLQL-EDRVLCLhnRW----RTLYAGLANGTVVTFDIKNNKRQEIFECHgPRAVSCLATAQEGARklLVVGSY 467
Cdd:cd00200 123 ETGKCLTTLRGhTDWVNSV--AFspdgTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEK--LLSSSS 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 468 DCTISVRDARNGLLLRTLEGHSKTVLCMKV--VNDLVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNI--LGKVMV 543
Cdd:cd00200 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFspDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWspDGKRLA 277
|
250
....*....|..
gi 1907137037 544 TACLDKFVRVYE 555
Cdd:cd00200 278 SGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
352-591 |
1.57e-32 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 127.45 E-value: 1.57e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 352 CVGVFEGHTSKVNCLlvtHTSGKSSVLYTGSSDHTIRCYNIKTRECMEQLQLE----DRVLCLHNRwRTLYAGLANGTVV 427
Cdd:cd00200 1 LRRTLKGHTGGVTCV---AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHtgpvRDVAASADG-TYLASGSSDKTIR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 428 TFDIKNNKRQEIFECHgPRAVSCLATAQEGarKLLVVGSYDCTISVRDARNGLLLRTLEGHSKTVLCMKV--VNDLVFSG 505
Cdd:cd00200 77 LWDLETGECVRTLTGH-TSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFspDGTFVASS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 506 SSDQSVHAHNIHTGELVRIYKGHNHAVTVVNIL--GKVMVTACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHKS--V 581
Cdd:cd00200 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSpdGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDgyL 233
|
250
....*....|
gi 1907137037 582 IYTGCYDGSI 591
Cdd:cd00200 234 LASGSEDGTI 243
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
286-511 |
4.88e-26 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 108.58 E-value: 4.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 286 TQTVISIKASKHSSEISSEPGD--------DEEPTEGSFEGHQAAVNAIQI--FGNFLYTCSADTTVRVYNLVSRKCVGV 355
Cdd:cd00200 93 TSYVSSVAFSPDGRILSSSSRDktikvwdvETGKCLTTLRGHTDWVNSVAFspDGTFVASSSQDGTIKLWDLRTGKCVAT 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 356 FEGHTSKVNCLLVthtSGKSSVLYTGSSDHTIRCYNIKTRECMEQLQledrvlcLHNRWrtlyaglangtvvtfdiknnk 435
Cdd:cd00200 173 LTGHTGEVNSVAF---SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-------GHENG--------------------- 221
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907137037 436 rqeifechgpraVSCLATAQEgaRKLLVVGSYDCTISVRDARNGLLLRTLEGHSKTVLCMKVVND--LVFSGSSDQSV 511
Cdd:cd00200 222 ------------VNSVAFSPD--GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDgkRLASGSADGTI 285
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
443-592 |
3.31e-10 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 62.62 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907137037 443 HGPRAVSCLATAQEGARklLVVGSYDCTISVRDARNGLLLRTLEGHSKTVLCMKVVND--LVFSGSSDQSVHAHNIHTGE 520
Cdd:COG2319 34 GLAAAVASLAASPDGAR--LAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDgrLLASASADGTVRLWDLATGL 111
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907137037 521 LVRIYKGHNHAVTVVNIL--GKVMVTACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHK--SVIYTGCYDGSIQ 592
Cdd:COG2319 112 LLRTLTGHTGAVRSVAFSpdGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPdgKLLASGSDDGTVR 187
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
349-391 |
1.74e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.30 E-value: 1.74e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1907137037 349 SRKCVGVFEGHTSKVNCLLVthtSGKSSVLYTGSSDHTIRCYN 391
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAF---SPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
350-391 |
1.40e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 39.64 E-value: 1.40e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1907137037 350 RKCVGVFEGHTSKVNCLLVthtSGKSSVLYTGSSDHTIRCYN 391
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAF---SPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
315-346 |
9.14e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 37.29 E-value: 9.14e-04
10 20 30
....*....|....*....|....*....|....
gi 1907137037 315 SFEGHQAAVNAIQIF--GNFLYTCSADTTVRVYN 346
Cdd:smart00320 7 TLKGHTGPVTSVAFSpdGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
314-346 |
1.52e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 36.55 E-value: 1.52e-03
10 20 30
....*....|....*....|....*....|....*
gi 1907137037 314 GSFEGHQAAVNAIQI--FGNFLYTCSADTTVRVYN 346
Cdd:pfam00400 5 KTLEGHTGSVTSLAFspDGKLLASGSDDGTVKVWD 39
|
|
|