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Conserved domains on  [gi|1907089293|ref|XP_036013516|]
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zinc finger C2HC domain-containing protein 1C isoform X1 [Mus musculus]

Protein Classification

C2HC-type zinc finger protein( domain architecture ID 10621545)

C2HC-type zinc finger protein similar to zinc finger protein 474 (ZNF474), a testis-specific zinc finger protein

CATH:  4.10.320.30
Gene Ontology:  GO:0008270
PubMed:  1280325|17210253|12665246
SCOP:  4003606

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 491-513 1.14e-05

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


:

Pssm-ID: 464037  Cd Length: 25  Bit Score: 42.18  E-value: 1.14e-05
                          10        20
                  ....*....|....*....|...
gi 1907089293 491 VQCPHCSRHFAPKVAERHIPKCK 513
Cdd:pfam13913   3 VPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 379-401 5.55e-05

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


:

Pssm-ID: 464037  Cd Length: 25  Bit Score: 40.25  E-value: 5.55e-05
                          10        20
                  ....*....|....*....|...
gi 1907089293 379 LAKCSHCGRSFLSLRLQRHSTVC 401
Cdd:pfam13913   2 LVPCPICGRTFNPDRLAKHEKIC 24
 
Name Accession Description Interval E-value
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 491-513 1.14e-05

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 42.18  E-value: 1.14e-05
                          10        20
                  ....*....|....*....|...
gi 1907089293 491 VQCPHCSRHFAPKVAERHIPKCK 513
Cdd:pfam13913   3 VPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 379-401 5.55e-05

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 40.25  E-value: 5.55e-05
                          10        20
                  ....*....|....*....|...
gi 1907089293 379 LAKCSHCGRSFLSLRLQRHSTVC 401
Cdd:pfam13913   2 LVPCPICGRTFNPDRLAKHEKIC 24
 
Name Accession Description Interval E-value
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 491-513 1.14e-05

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 42.18  E-value: 1.14e-05
                          10        20
                  ....*....|....*....|...
gi 1907089293 491 VQCPHCSRHFAPKVAERHIPKCK 513
Cdd:pfam13913   3 VPCPICGRTFNPDRLAKHEKICK 25
zf-C2HC_2 pfam13913
zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.
 379-401 5.55e-05

zinc-finger of a C2HC-type; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464037  Cd Length: 25  Bit Score: 40.25  E-value: 5.55e-05
                          10        20
                  ....*....|....*....|...
gi 1907089293 379 LAKCSHCGRSFLSLRLQRHSTVC 401
Cdd:pfam13913   2 LVPCPICGRTFNPDRLAKHEKIC 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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