NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1907196012|ref|XP_036010653|]
View 

transmembrane inner ear expressed protein isoform X1 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TMIE super family cl24564
TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed ...
 114-174 1.27e-21

TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed protein. It's function is unknown.


The actual alignment was detected with superfamily member pfam16038:

Pssm-ID: 464987  Cd Length: 85  Bit Score: 84.31  E-value: 1.27e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907196012 114 VITLCCVFNCRVPRTRKEIEARYLQRKAAKMYTDKLETVPPlNELTEIPGEDKKKKKKDSV 174
Cdd:pfam16038  26 VIILCCCFRFRIPRTKQEIEADYARKKLAKKFREKLETIPN-TEMDEMDLEKALERVQEEV 85
 
Name Accession Description Interval E-value
TMIE pfam16038
TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed ...
 114-174 1.27e-21

TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed protein. It's function is unknown.


Pssm-ID: 464987  Cd Length: 85  Bit Score: 84.31  E-value: 1.27e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907196012 114 VITLCCVFNCRVPRTRKEIEARYLQRKAAKMYTDKLETVPPlNELTEIPGEDKKKKKKDSV 174
Cdd:pfam16038  26 VIILCCCFRFRIPRTKQEIEADYARKKLAKKFREKLETIPN-TEMDEMDLEKALERVQEEV 85
 
Name Accession Description Interval E-value
TMIE pfam16038
TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed ...
 114-174 1.27e-21

TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed protein. It's function is unknown.


Pssm-ID: 464987  Cd Length: 85  Bit Score: 84.31  E-value: 1.27e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907196012 114 VITLCCVFNCRVPRTRKEIEARYLQRKAAKMYTDKLETVPPlNELTEIPGEDKKKKKKDSV 174
Cdd:pfam16038  26 VIILCCCFRFRIPRTKQEIEADYARKKLAKKFREKLETIPN-TEMDEMDLEKALERVQEEV 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH