|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
155-405 |
1.74e-34 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 132.05 E-value: 1.74e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 155 LQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELN 233
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRR--------LGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELD 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 234 RNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGM 313
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 314 MLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLRVKYLREYSRYL 393
Cdd:COG0457 153 ALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
|
250
....*....|..
gi 1907188852 394 HAHLDTPLTEYN 405
Cdd:COG0457 233 LRLAALALYQYR 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
134-339 |
3.36e-30 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 119.73 E-value: 3.36e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 134 IAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQP-SARLYRHRGTL 212
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLR--------LGRYEEALADYEQALELDPdDAEALNNLGLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 213 YFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATE 292
Cdd:COG0457 86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1907188852 293 SFQKAL----LLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNE 339
Cdd:COG0457 166 LLEKLEaaalAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
131-370 |
2.75e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 112.13 E-value: 2.75e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 131 ELAIAYVLvgSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhilsplgRINEAVNDLTKAIQLQP-SARLYRHR 209
Cdd:COG2956 13 FKGLNYLL--NGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRG--------EYDRAIRIHQKLLERDPdRAEALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 210 GTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDA 289
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 290 ATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLND 369
Cdd:COG2956 163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242
|
.
gi 1907188852 370 P 370
Cdd:COG2956 243 P 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
122-340 |
1.08e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 107.51 E-value: 1.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 122 ATDNDSTNEE--LAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHilsplgriNEAVNDLTKAIQL 199
Cdd:COG2956 34 ALELDPETVEahLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL--------DRAEELLEKLLEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 200 QP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLG 278
Cdd:COG2956 106 DPdDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907188852 279 QAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEV 340
Cdd:COG2956 186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
203-336 |
3.44e-24 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 98.73 E-value: 3.44e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 203 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYR 282
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1907188852 283 ELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 336
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
124-333 |
5.30e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 102.50 E-value: 5.30e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 124 DNDSTNEELAIAYVLvgSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQP-S 202
Cdd:COG2956 74 DRAEALLELAQDYLK--AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQ--------EGDWEKAIEVLERLLKLGPeN 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 203 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYR 282
Cdd:COG2956 144 AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1907188852 283 ELGNFDAATESFQKALLLNQNHVQTLQLrGMMLYHHGSLQEALKNFKRCLQ 333
Cdd:COG2956 224 KLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLR 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
177-396 |
8.18e-24 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 107.00 E-value: 8.18e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 177 LHILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKE 255
Cdd:COG3914 85 ALLLQALGRYEEALALYRRALALNPdNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 256 AIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLE 335
Cdd:COG3914 165 AIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907188852 336 PYNEVC-----QYMKGLS-------HVAMGQFYE-GIKAQTKVMLNDPLPGQKaspeyLRVKYLreySRYLHAH 396
Cdd:COG3914 245 RGPSELspfalLYLPDDDpaellalARAWAQLVAaAAAPELPPPPNPRDPDRK-----LRIGYV---SADFRRH 310
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
196-370 |
2.57e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 102.38 E-value: 2.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 196 AIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYK 275
Cdd:COG3914 71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 276 SLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEV--CQYMKGLSHVAMG 353
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADahSNLLFALRQACDW 230
|
170
....*....|....*..
gi 1907188852 354 QFYEGIKAQTKVMLNDP 370
Cdd:COG3914 231 EVYDRFEELLAALARGP 247
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
156-333 |
2.59e-22 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 96.14 E-value: 2.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 156 QEEPDLVSAIYGRGIAYGKKGLHilsplgriNEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNR 234
Cdd:COG4785 67 LALPDLAQLYYERGVAYDSLGDY--------DLAIADFDQALELDPdLAEAYNNRGLAYLLLGDYDAALEDFDRALELDP 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 235 NQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGnfdaatesFQKALLLNQNHVQTLQLrgmm 314
Cdd:COG4785 139 DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD--------PEKALALLLEDWATAYL---- 206
|
170
....*....|....*....
gi 1907188852 315 lyHHGSLQEALKNFKRCLQ 333
Cdd:COG4785 207 --LQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
162-304 |
2.65e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 87.94 E-value: 2.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 162 VSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAM 240
Cdd:COG4783 4 AEALYALAQALLL--------AGDYDEAEALLEKALELDPdNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEAR 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907188852 241 LYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 304
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
209-387 |
3.48e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 91.33 E-value: 3.48e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 209 RGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFD 288
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 289 AATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMln 368
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL-- 171
|
170
....*....|....*....
gi 1907188852 369 dplpgqKASPEYLRVKYLR 387
Cdd:COG2956 172 ------KLDPDCARALLLL 184
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
133-303 |
7.09e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 89.68 E-value: 7.09e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 133 AIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQPS-ARLYRHRGT 211
Cdd:COG0457 47 NLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQA--------LGRYEEALEDYDKALELDPDdAEALYNLGL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 212 LYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAAT 291
Cdd:COG0457 119 ALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
|
170
....*....|..
gi 1907188852 292 ESFQKALLLNQN 303
Cdd:COG0457 199 LLLALEQALRKK 210
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
222-336 |
3.61e-19 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 84.29 E-value: 3.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 222 AHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLN 301
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*
gi 1907188852 302 QNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 336
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
188-314 |
1.46e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 82.36 E-value: 1.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 188 EAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQ 266
Cdd:COG4235 1 EAIARLRQALAANPnDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1907188852 267 KVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMM 314
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
104-372 |
3.81e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 89.37 E-value: 3.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 104 EKILSQAKSIAEQkrfpfatdndSTNEELAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGiaygkkglHILSPL 183
Cdd:TIGR02917 145 QKSYEQALAIDPR----------SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG--------DLLLSL 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 184 GRINEAVNDLTKAIQLQP-----------------------------SARLYRHRGTLY------FISEDYATAHEDFQQ 228
Cdd:TIGR02917 207 GNIELALAAYRKAIALRPnniavllalatilieagefeeaekhadalLKKAPNSPLAHYlkalvdFQKKNYEDARETLQD 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 229 SLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTL 308
Cdd:TIGR02917 287 ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAAL 366
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907188852 309 QLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKA-QTKVMLNDPLP 372
Cdd:TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADlETAAQLDPELG 431
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
255-361 |
4.90e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 80.82 E-value: 4.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 255 EAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQL 334
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*..
gi 1907188852 335 EPYNEVCQYMKGLSHVAMGQFYEGIKA 361
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
198-361 |
7.37e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 88.13 E-value: 7.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 198 QLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSL 277
Cdd:COG3914 39 AALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 278 GQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYE 357
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198
|
....
gi 1907188852 358 GIKA 361
Cdd:COG3914 199 AIAA 202
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
241-370 |
1.08e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.01 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 241 LYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGS 320
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1907188852 321 LQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 370
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
239-370 |
1.16e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 80.24 E-value: 1.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 239 AMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHH 318
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1907188852 319 GSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 370
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
131-298 |
2.46e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 81.89 E-value: 2.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 131 ELAIAYVLVGsgLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQPS-ARLYRHR 209
Cdd:COG4785 78 ERGVAYDSLG--DYDLAIADFDQALELDPDLAEAYNNRGLAYLL--------LGDYDAALEDFDRALELDPDyAYAYLNR 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 210 GTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTffhrgllkEAIEAFKEALKQKVDFIdaykslGQAYRELGNFDA 289
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLA--------ERKLDPEKALALLLEDW------ATAYLLQGDTEE 213
|
....*....
gi 1907188852 290 ATESFQKAL 298
Cdd:COG4785 214 ARELFKLAL 222
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
146-266 |
1.68e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 73.89 E-value: 1.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 146 EAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHE 224
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLR--------LGRYDEALAAYEKALRLDPdNADALLDLAEALLAAGDTEEAEE 72
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1907188852 225 DFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQ 266
Cdd:COG4235 73 LLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
247-336 |
4.64e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 71.35 E-value: 4.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 247 FFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAAtESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALK 326
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 1907188852 327 NFKRCLQLEP 336
Cdd:COG3063 81 YLERALELDP 90
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
244-336 |
5.58e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.95 E-value: 5.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 244 GLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQE 323
Cdd:COG4785 80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159
|
90
....*....|...
gi 1907188852 324 ALKNFKRCLQLEP 336
Cdd:COG4785 160 AIADLEKALELDP 172
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
188-301 |
4.33e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 70.37 E-value: 4.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 188 EAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQK 267
Cdd:COG5010 39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
|
90 100 110
....*....|....*....|....*....|....
gi 1907188852 268 VDFIDAYKSLGQAYRELGNFDAATESFQKALLLN 301
Cdd:COG5010 119 PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
185-336 |
5.51e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 70.37 E-value: 5.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 185 RINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEAL 264
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907188852 265 KQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 336
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
109-384 |
9.82e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.12 E-value: 9.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 109 QAKSIAEQKRFPFATDNDSTNEELAiAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAiygrgiaYGKKGLHILSpLGRINE 188
Cdd:TIGR02917 345 VDEAIATLSPALGLDPDDPAALSLL-GEAYLALGDFEKAAEYLAKATELDPENAAA-------RTQLGISKLS-QGDPSE 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 189 AVNDLTKAIQLQPS---ARLyrhrgtlyFISEDYATAHE-----DFQQSLELNR-NQPTAMLYKGLTFFHRGLLKEAIEA 259
Cdd:TIGR02917 416 AIADLETAAQLDPElgrADL--------LLILSYLRSGQfdkalAAAKKLEKKQpDNASLHNLLGAIYLGKGDLAKAREA 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 260 FKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNE 339
Cdd:TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI 567
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1907188852 340 VcqymkglSHVAMGQFYEGIK--AQTKVMLNDPLPGQKASPEYLRVK 384
Cdd:TIGR02917 568 E-------PALALAQYYLGKGqlKKALAILNEAADAAPDSPEAWLML 607
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
212-301 |
5.65e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 65.19 E-value: 5.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 212 LYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIeAFKEALKQKVDFIDAYKSLGQAYRELGNFDAAT 291
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 1907188852 292 ESFQKALLLN 301
Cdd:COG3063 80 AYLERALELD 89
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
218-371 |
2.50e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 65.37 E-value: 2.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 218 DYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKA 297
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907188852 298 LLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPL 371
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
206-333 |
7.93e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 68.86 E-value: 7.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 206 YRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELG 285
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1907188852 286 NFDAATESFQKALLLNQNHV-QTLQLrGMMLYHHGSLQEALKNFKRCLQ 333
Cdd:TIGR00990 414 EFAQAGKDYQKSIDLDPDFIfSHIQL-GVTQYKEGSIASSMATFRRCKK 461
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
119-377 |
4.68e-11 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 66.16 E-value: 4.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 119 FPFATDNDSTNEELAIAYVLVGS-----GLYDEAIRHFSTMLQEEPDLVSAiygrgiaYGKKGLhILSPLGRINEAVNDL 193
Cdd:TIGR00990 317 FEKALDLGKLGEKEAIALNLRGTfkclkGKHLEALADLSKSIELDPRVTQS-------YIKRAS-MNLELGDPDKAEEDF 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 194 TKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFID 272
Cdd:TIGR00990 389 DKALKLNSEdPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 273 AYKSLGQAYRELGNFDAATESFQ---------------------KALLL---NQNHVQTLQL---------------RGM 313
Cdd:TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDtaieleketkpmymnvlplinKALALfqwKQDFIEAENLcekaliidpecdiavATM 548
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907188852 314 --MLYHHGSLQEALKNFKRCLQLEPYNEvcQYMKGLShvamgqFYEGIKAQTKVMLNDPLPGQKAS 377
Cdd:TIGR00990 549 aqLLLQQGDVDEALKLFERAAELARTEG--ELVQAIS------YAEATRTQIQVQEDYPVLASKLQ 606
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
272-370 |
1.66e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.82 E-value: 1.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 272 DAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVA 351
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90
....*....|....*....
gi 1907188852 352 MGQFYEGIKAQTKVMLNDP 370
Cdd:COG4783 85 AGDYDEALALLEKALKLDP 103
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
280-370 |
1.94e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.26 E-value: 1.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 280 AYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKnFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGI 359
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 1907188852 360 KAQTKVMLNDP 370
Cdd:COG3063 80 AYLERALELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
116-233 |
2.75e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 2.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 116 QKRFPFATDNDSTNEE--LAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDL 193
Cdd:COG4783 24 EALLEKALELDPDNPEafALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK--------AGDYDEALALL 95
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1907188852 194 TKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELN 233
Cdd:COG4783 96 EKALKLDPeHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
113-233 |
2.95e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.59 E-value: 2.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 113 IAEQKRFPFATDNDSTNEELAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVND 192
Cdd:COG5010 39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR--------SGDKDEAKEY 110
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1907188852 193 LTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELN 233
Cdd:COG5010 111 YEKALALSPdNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
135-265 |
4.50e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 60.31 E-value: 4.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 135 AYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYgkkglhilSPLGRINEAVNDLTKAIQLQPSARlYRHrgtlyf 214
Cdd:COG4785 114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL--------YYLGRYELAIADLEKALELDPNDP-ERA------ 178
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1907188852 215 ISEDYATAHEDFQQSLE-LNRNQPTAMLYKGLTffhrgllKEAIEAFKEALK 265
Cdd:COG4785 179 LWLYLAERKLDPEKALAlLLEDWATAYLLQGDT-------EEARELFKLALA 223
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
201-382 |
3.18e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.00 E-value: 3.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 201 PSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALkQKVDFIDAYKSLGQA 280
Cdd:COG4785 4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 281 YRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIK 360
Cdd:COG4785 83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIA 162
|
170 180
....*....|....*....|..
gi 1907188852 361 AQTKVMLNDPLPGQKASPEYLR 382
Cdd:COG4785 163 DLEKALELDPNDPERALWLYLA 184
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
196-361 |
3.35e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 3.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 196 AIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYK 275
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 276 SLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQF 355
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162
|
....*.
gi 1907188852 356 YEGIKA 361
Cdd:COG3914 163 EEAIAA 168
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
122-357 |
4.28e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.10 E-value: 4.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 122 ATDNDSTNEELAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYgkkglhilSPLGRINEAVNDLTKAIQLQP 201
Cdd:TIGR02917 16 ACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIY--------LALGDYAAAEKELRKALSLGY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 202 SARLyrhrgTLYFISEDYATAHEdFQQSLEL--------NRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDA 273
Cdd:TIGR02917 88 PKNQ-----VLPLLARAYLLQGK-FQQVLDElpgktlldDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 274 YKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMG 353
Cdd:TIGR02917 162 KLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAG 241
|
....
gi 1907188852 354 QFYE 357
Cdd:TIGR02917 242 EFEE 245
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
213-298 |
4.39e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 55.00 E-value: 4.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 213 YFISEDYATAHEDFQQSLELNRN---QPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFI---DAYKSLGQAYRELGN 286
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGD 82
|
90
....*....|..
gi 1907188852 287 FDAATESFQKAL 298
Cdd:COG1729 83 YDKARATLEELI 94
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
272-358 |
1.36e-08 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 57.25 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 272 DAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKglshva 351
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKYLY------ 74
|
....*..
gi 1907188852 352 MGQFYEG 358
Cdd:cd24142 75 LGQLSGG 81
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
105-364 |
1.78e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.17 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 105 KILSQAKSIAEQKRfpfatDNDSTNEELAIAYVlvGSGLYDEAIRHFSTMLQEEPDLVSAI------------------- 165
Cdd:TIGR02917 449 KALAAAKKLEKKQP-----DNASLHNLLGAIYL--GKGDLAKAREAFEKALSIEPDFFPAAanlaridiqegnpddaiqr 521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 166 YGRGIAYGKKGLHILSPL-------GRINEAVNDLTKAIQLQPSA-RLYRHRGTLYFISEDYATAHEDFQQSLELNRNQP 237
Cdd:TIGR02917 522 FEKVLTIDPKNLRAILALaglylrtGNEEEAVAWLEKAAELNPQEiEPALALAQYYLGKGQLKKALAILNEAADAAPDSP 601
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 238 TAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYH 317
Cdd:TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1907188852 318 HGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTK 364
Cdd:TIGR02917 682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
135-338 |
2.64e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.79 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 135 AYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhilsplgRINEAVNDLTKAIQLQP-SARLYRHRGTLY 213
Cdd:TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG--------DFEKAAEYLAKATELDPeNAAARTQLGISK 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 214 FISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATES 293
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1907188852 294 FQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYN 338
Cdd:TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN 532
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
131-245 |
5.65e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.32 E-value: 5.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 131 ELAIAYVLvgSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQPS-ARLYRHR 209
Cdd:COG4235 22 LLGRAYLR--LGRYDEALAAYEKALRLDPDNADALLDLAEALLA--------AGDTEEAEELLERALALDPDnPEALYLL 91
|
90 100 110
....*....|....*....|....*....|....*..
gi 1907188852 210 GTLYFISEDYATAHEDFQQSLELN-RNQPTAMLYKGL 245
Cdd:COG4235 92 GLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEASI 128
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
137-235 |
9.46e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.55 E-value: 9.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 137 VLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVnDLTKAIQLQPS-ARLYRHRGTLYFI 215
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLE--------QGRYDEAI-ALEKALKLDPNnAEALLNLAELLLE 71
|
90 100
....*....|....*....|
gi 1907188852 216 SEDYATAHEDFQQSLELNRN 235
Cdd:COG3063 72 LGDYDEALAYLERALELDPS 91
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
183-336 |
1.56e-07 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 53.74 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 183 LGRINE--AVNDLTKAIQlqpsARLYRHRGTLYfiseD----YATAHEDFQQSLELNRNQPtamlykgltffhrgllkea 256
Cdd:PRK11189 46 LARLNQilASRDLTDEER----AQLHYERGVLY----DslglRALARNDFSQALALRPDMA------------------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 257 ieafkealkqkvdfiDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 336
Cdd:PRK11189 99 ---------------DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
183-300 |
5.15e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 52.61 E-value: 5.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 183 LGRINEAVNDLTKAIQLQPSARLYRHRGTLyfISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKE 262
Cdd:COG3071 206 LGDHDEAERLLREALKRQWDPRLVRLYGRL--QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEA 283
|
90 100 110
....*....|....*....|....*....|....*...
gi 1907188852 263 ALKQKVDfIDAYKSLGQAYRELGNFDAATESFQKALLL 300
Cdd:COG3071 284 ALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALAL 320
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
271-304 |
1.46e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 45.10 E-value: 1.46e-06
10 20 30
....*....|....*....|....*....|....
gi 1907188852 271 IDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 304
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
271-304 |
2.68e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 44.36 E-value: 2.68e-06
10 20 30
....*....|....*....|....*....|....
gi 1907188852 271 IDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 304
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
215-360 |
2.69e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.14 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 215 ISEDYATAHEDFQQSLELNRNQPtamlYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAY-------RELGNF 287
Cdd:TIGR00990 306 ADESYEEAARAFEKALDLGKLGE----KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYikrasmnLELGDP 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 288 DAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYN-------EVCQYMKGLSHVAMGQFYEGIK 360
Cdd:TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFifshiqlGVTQYKEGSIASSMATFRRCKK 461
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
209-266 |
1.04e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 43.86 E-value: 1.04e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907188852 209 RGTLYFISEDYATAHEDFQQSLELNRNQP---TAMLYKGLTFFHRGLLKEAIEAFKEALKQ 266
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
247-336 |
1.32e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.98 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 247 FFHRGLLKEAIEAFKEALKQKVD---FIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQT---LQLRGMMLYHHGS 320
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGD 82
|
90
....*....|....*.
gi 1907188852 321 LQEALKNFKRCLQLEP 336
Cdd:COG1729 83 YDKARATLEELIKKYP 98
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
144-371 |
1.44e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.93 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 144 YDEAIRHFSTMLQEEPDLVSAIYGRG--------------IAYGKKGLHILSPLG---------RIN---EAVNDLTKAI 197
Cdd:TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAqlllaakrtesakkIAKSLQKQHPKAALGfelegdlylRQKdypAAIQAYRKAL 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 198 QLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSL 277
Cdd:TIGR02917 731 KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNL 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 278 GQAYRELGNfDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYmkglsHVAMGQFYE 357
Cdd:TIGR02917 811 AWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY-----HLALALLAT 884
|
250
....*....|....
gi 1907188852 358 GIKAQTKVMLNDPL 371
Cdd:TIGR02917 885 GRKAEARKELDKLL 898
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
132-233 |
1.59e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 47.42 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 132 LAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQPSARLYRHRGT 211
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK--------LGDPEEALELLRKALELDPSDDLLLALAD 253
|
90 100
....*....|....*....|..
gi 1907188852 212 LYFISEDYATAHEDFQQSLELN 233
Cdd:COG2956 254 LLERKEGLEAALALLERQLRRH 275
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
238-298 |
1.90e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.53 E-value: 1.90e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907188852 238 TAMLYKGLTFFHRGLLKEAIEAFKEAL--------KQKVDFIDAYKSLGQAYRELGNFDAATESFQKAL 298
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
184-330 |
2.65e-05 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 47.99 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 184 GRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEA 263
Cdd:PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 264 LKqkvDFIDAY---KSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLrgmmlyhHGSLQEALKNFKR 330
Cdd:PRK09782 670 HK---GLPDDPaliRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPL-------TPEQNQQRFNFRR 729
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
204-296 |
3.20e-05 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 43.81 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 204 RLYRHRGTLYFISEDYATAHEDFQQSLELNRN---QPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFI---DAYKSL 277
Cdd:TIGR02795 1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKstyAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkapDALLKL 80
|
90
....*....|....*....
gi 1907188852 278 GQAYRELGNFDAATESFQK 296
Cdd:TIGR02795 81 GMSLQELGDKEKAKATLQQ 99
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
269-334 |
4.67e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.37 E-value: 4.67e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907188852 269 DFIDAYKSLGQAYRELGNFDAATESFQKALLLNQ--------NHVQTLQLRGMMLYHHGSLQEALKNFKRCLQL 334
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
244-285 |
6.47e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.92 E-value: 6.47e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1907188852 244 GLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELG 285
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
184-266 |
6.73e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 6.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 184 GRINEAVNDLTKAIQLQPSARL----YRHRGTLYFISEDYATAHEDFQQSLEL---NRNQPTAMLYKGLTFFHRGLLKEA 256
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPLapdaLYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDYDKA 86
|
90
....*....|
gi 1907188852 257 IEAFKEALKQ 266
Cdd:COG1729 87 RATLEELIKK 96
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
110-347 |
7.64e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 46.61 E-value: 7.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 110 AKSIAEQKRFPFATDNDStneEL--AIAYVLVGSGLYDEAIRHFSTMLQEEPD----------LVSAIYGRGIAYGKKGL 177
Cdd:PRK11447 286 GKAIPELQQAVRANPKDS---EAlgALGQAYSQQGDRARAVAQFEKALALDPHssnrdkweslLKVNRYWLLIQQGDAAL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 178 hilsplgrineAVNDLTKAIQLQPSARLYRHR--------GTLYFISEDYATAHEDFQQSLELNRNQPTAMlyKGLTFFH 249
Cdd:PRK11447 363 -----------KANNLAQAERLYQQARQVDNTdsyavlglGDVAMARKDYAAAERYYQQALRMDPGNTNAV--RGLANLY 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 250 RGLLKEAIEAFKEAL--KQKVDFIDAYKSL--------GQAYRELGNFDAATESFQKALLLNQNHVQ-TLQLRGmMLYHH 318
Cdd:PRK11447 430 RQQSPEKALAFIASLsaSQRRSIDDIERSLqndrlaqqAEALENQGKWAQAAELQRQRLALDPGSVWlTYRLAQ-DLRQA 508
|
250 260
....*....|....*....|....*....
gi 1907188852 319 GSLQEALKNFKRCLQLEPYNEVCQYMKGL 347
Cdd:PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGL 537
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
203-265 |
1.07e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.22 E-value: 1.07e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907188852 203 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQP--------TAMLYKGLTFFHRGLLKEAIEAFKEALK 265
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpdhpltaTTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
132-201 |
1.85e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.10 E-value: 1.85e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 132 LAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQP 201
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA--------LGRPDEAIAALEKALELDP 137
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
166-277 |
2.54e-04 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 43.73 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 166 YGRGIAYGKKGLHILsplgrineAVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKG 244
Cdd:PRK11189 68 YERGVLYDSLGLRAL--------ARNDFSQALALRPDmADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139
|
90 100 110
....*....|....*....|....*....|...
gi 1907188852 245 LTFFHRGLLKEAIEAFKEALKQKVDfiDAYKSL 277
Cdd:PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPN--DPYRAL 170
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
272-303 |
4.53e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 38.27 E-value: 4.53e-04
10 20 30
....*....|....*....|....*....|..
gi 1907188852 272 DAYKSLGQAYRELGNFDAATESFQKALLLNQN 303
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
253-311 |
8.26e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.33 E-value: 8.26e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907188852 253 LKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLR 311
Cdd:pfam14559 4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALL 62
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
132-201 |
9.90e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.71 E-value: 9.90e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 132 LAIAYVLVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQP 201
Cdd:COG5010 92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS--------LGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
126-365 |
1.02e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 126 DSTNEELAIAYV--LVGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHilsplgriNEAVNDLTKAIQLQP-S 202
Cdd:TIGR02917 563 NPQEIEPALALAqyYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL--------NKAVSSFKKLLALQPdS 634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 203 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYR 282
Cdd:TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 283 ELGNFDAATESFQKALLLNQNHvQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQ 362
Cdd:TIGR02917 715 RQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY 793
|
...
gi 1907188852 363 TKV 365
Cdd:TIGR02917 794 QTV 796
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
184-334 |
1.08e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 41.91 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 184 GRINEAVNDLTKAIQLQPSARLYrHR-------GTLYFISEDYATAHEDFQQSLELNR--NQPT----AMLYKGLTFFHR 250
Cdd:pfam17874 15 GDAERALELAEQALALLPEDDLL-ARglatfvlGEAYLCLGDLDAALQAMREAEALARraDSPHvtlwALLQQGEILRAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 251 GLLKEAIEAFKEALK------QKVDFI--DAYKSLGQAYRELGNFDAATESFQKALLLNQNH--VQTLQLRGMMLYHH-- 318
Cdd:pfam17874 94 GRLHQALETYQQALQlardhgLQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWepDAAVDAYVLLARIAla 173
|
170
....*....|....*..
gi 1907188852 319 -GSLQEALKNFKRCLQL 334
Cdd:pfam17874 174 qGELEEALTLLRRAELL 190
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
277-339 |
2.44e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 37.32 E-value: 2.44e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907188852 277 LGQAYRELGNFDAATESFQKALLLNQNHVQTLQ---LRGMMLYHHGSLQEALKNFKRCLQLEPYNE 339
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPESPDAAAallLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
254-304 |
2.97e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 40.69 E-value: 2.97e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1907188852 254 KEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 304
Cdd:cd24142 17 ELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
203-235 |
3.21e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 3.21e-03
10 20 30
....*....|....*....|....*....|...
gi 1907188852 203 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 235
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
134-204 |
4.30e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 4.30e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907188852 134 IAYVLVGSGLYDEAIRhFSTMLQEEPDLVSAIYGRGIAYGKkglhilspLGRINEAVNDLTKAIQLQPSAR 204
Cdd:COG3063 32 LGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLE--------LGDYDEALAYLERALELDPSAL 93
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
188-334 |
5.23e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 40.61 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 188 EAVNDLTKAIQL-------QPSARLYRHRGTLYFISEDYATAHEDFQQSLElnrnqptAMLYKGLTFFHRGLLKEAIEaf 260
Cdd:COG3899 723 EALRYLERALELlppdpeeEYRLALLLELAEALYLAGRFEEAEALLERALA-------ARALAALAALRHGNPPASAR-- 793
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 261 kealkqkvdfidAYKSLGQAYRelGNFDAATESFQKALLLNQNH------VQTLQLRGMMLYHHGSLQEALKNFKRCLQL 334
Cdd:COG3899 794 ------------AYANLGLLLL--GDYEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEA 859
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
277-303 |
6.26e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.07 E-value: 6.26e-03
10 20
....*....|....*....|....*..
gi 1907188852 277 LGQAYRELGNFDAATESFQKALLLNQN 303
Cdd:pfam13181 7 LGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
203-235 |
8.18e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.81 E-value: 8.18e-03
10 20 30
....*....|....*....|....*....|...
gi 1907188852 203 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 235
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
191-336 |
8.47e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.12 E-value: 8.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907188852 191 NDLTKAIQLQPS-----ARLYRHRGtlyfiseDYATAHEDFQQSLELNRNQPTAMLYKGLtffHRGLLKEAIEAFKEALK 265
Cdd:COG3071 183 KALPRAERRDPElaaayARALIALG-------DHDEAERLLREALKRQWDPRLVRLYGRL---QGGDPAKQLKRAEKWLK 252
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907188852 266 QKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNhVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 336
Cdd:COG3071 253 KHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
|
|
| |
