NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1907184221|ref|XP_036009340|]
View 

WD repeat-containing protein 73 isoform X1 [Mus musculus]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 1903264)

WD40 repeat domain-containing protein folds into a beta-propeller structure and functions as a scaffold, providing a platform for the interaction and assembly of several proteins into a signalosome; similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
Gene Ontology:  GO:0005515
PubMed:  30069656|29026209
SCOP:  4002744

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
WD40 super family cl43672
WD40 repeat [General function prediction only];
129-260 6.42e-05

WD40 repeat [General function prediction only];


The actual alignment was detected with superfamily member COG2319:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 43.75  E-value: 6.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907184221 129 GPCIASLGSDGQLCLLDsrnlchpVSSAQCPVFKPSPDPELLRVTWAPGlDNCLAISGFDGTVQIYDVTSWdgkktqaEP 208
Cdd:COG2319   258 GRLLASGSADGTVRLWD-------LATGELLRTLTGHSGGVNSVAFSPD-GKLLASGSDDGTVRLWDLATG-------KL 322

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1907184221 209 LFTHKGHIfldgNDVDSAplvtthTWHPrKPRTLLSAASDSSLHVWDWVDLQ 260
Cdd:COG2319   323 LRTLTGHT----GAVRSV------AFSP-DGKTLASGSDDGTVRLWDLATGE 363
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
129-260 6.42e-05

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 43.75  E-value: 6.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907184221 129 GPCIASLGSDGQLCLLDsrnlchpVSSAQCPVFKPSPDPELLRVTWAPGlDNCLAISGFDGTVQIYDVTSWdgkktqaEP 208
Cdd:COG2319   258 GRLLASGSADGTVRLWD-------LATGELLRTLTGHSGGVNSVAFSPD-GKLLASGSDDGTVRLWDLATG-------KL 322

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1907184221 209 LFTHKGHIfldgNDVDSAplvtthTWHPrKPRTLLSAASDSSLHVWDWVDLQ 260
Cdd:COG2319   323 LRTLTGHT----GAVRSV------AFSP-DGKTLASGSDDGTVRLWDLATGE 363
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
129-260 6.42e-05

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 43.75  E-value: 6.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907184221 129 GPCIASLGSDGQLCLLDsrnlchpVSSAQCPVFKPSPDPELLRVTWAPGlDNCLAISGFDGTVQIYDVTSWdgkktqaEP 208
Cdd:COG2319   258 GRLLASGSADGTVRLWD-------LATGELLRTLTGHSGGVNSVAFSPD-GKLLASGSDDGTVRLWDLATG-------KL 322

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1907184221 209 LFTHKGHIfldgNDVDSAplvtthTWHPrKPRTLLSAASDSSLHVWDWVDLQ 260
Cdd:COG2319   323 LRTLTGHT----GAVRSV------AFSP-DGKTLASGSDDGTVRLWDLATGE 363
WD40 COG2319
WD40 repeat [General function prediction only];
132-256 6.81e-04

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 40.66  E-value: 6.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907184221 132 IASLGSDGQLCLLDsrnlchpVSSAQCPVFKPSPDPELLRVTWAPGlDNCLAISGFDGTVQIYDVTSWdgkktqaEPLFT 211
Cdd:COG2319   219 LASGSADGTVRLWD-------LATGKLLRTLTGHSGSVRSVAFSPD-GRLLASGSADGTVRLWDLATG-------ELLRT 283

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1907184221 212 HKGHifldGNDVDSAplvtthTWHPrKPRTLLSAASDSSLHVWDW 256
Cdd:COG2319   284 LTGH----SGGVNSV------AFSP-DGKLLASGSDDGTVRLWDL 317
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH