|
Name |
Accession |
Description |
Interval |
E-value |
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
568-1558 |
0e+00 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 1214.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 568 GKHSMRTRRSRGSMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKST 647
Cdd:pfam03154 1 GKHSMRTRRSRGSMSTLRSGRKKQTASPDGRASPTNEDLRSSGRNSPSAASTSSNDSKAESMKKSSKKIKEEAPSPLKSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 648 KRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDS 727
Cdd:pfam03154 81 KRQREKGASDTEEPERATAKKSKTQEISRPNSPSEGEGESSDGRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 728 SAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPaaHTHIQQAPTLH 807
Cdd:pfam03154 161 SAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAP--HTLIQQTPTLH 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 808 PPRLPSPHPPLQPMT--APPSQSSAQPHPQPSLHSQGPPGPHSLQTGP-LLQHPGPPQPFGLPSQPSQGQGPLGPSPAAA 884
Cdd:pfam03154 239 PQRLPSPHPPLQPMTqpPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPsHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 885 HP-HSTIQLPASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSLNANLPPPPALKP 963
Cdd:pfam03154 319 GQsQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSNLPPPPALKP 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 964 LSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTT-GLHQVPSQSPFPQHPFVPGGPPPITPP 1042
Cdd:pfam03154 399 LSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTsGLHQVPSQSPFPQHPFVPGGPPPITPP 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1043 SCPPTSTPPAGPSSSSQPPcsAAVSSGGSVPGAPSCPLPAVQIKEEALDEAEEPESPPPPPRSPSPEPTVVDTPSHASQS 1122
Cdd:pfam03154 479 SGPPTSTSSAMPGIQPPSS--ASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSPSPEPTVVNTPSHASQS 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1123 ARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAqKAS 1202
Cdd:pfam03154 557 ARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEALEKAKREAEQKAREEKEREKEKEKEREREREREREAERAA-KAS 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1203 SSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNRNHPFYMPLNPTDPLLAYHM 1282
Cdd:pfam03154 636 SSSHEGRMGDPQLAGPAHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNRNHPFFVPLNPTDPLLAYHM 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1283 PGLYNVDPTIRERELREREIREREIRERELRERMKPGFEVKPPELDPLHPATNPMEHFARHSALTIPPAAGPHPFASFHP 1362
Cdd:pfam03154 716 PGLYNVDPAIRERELREREIREREIRERELRERMKPGFEVKPPELDPLHPATNPMEHFARHGALTLPPMAGPHPFASFHP 795
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1363 GLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSA 1442
Cdd:pfam03154 796 GLNPLERERLALAGPQLRPEMSYPDRLAAERLHAERMASLTNDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSG 875
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1443 GPVHPLVDPLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRDLPGAIPPPMSAAHQLQAMHAQSAELQR 1522
Cdd:pfam03154 876 GPVHPLVDPLAAGPHLARFPYPPGAIPNPLLGQPPHEHEMLRHPVFGTPYPRDLPGGLPPPMSAAHQLQAMHAQSAELQR 955
|
970 980 990
....*....|....*....|....*....|....*.
gi 1720409718 1523 LAMEQQWLHGHPHMHGGHLPSQEDYYSRLKKEGDKQ 1558
Cdd:pfam03154 956 LAMEQQWLHGHPHMHGGHLPGQEDYYSRLKKESDKQ 991
|
|
| BAH_MTA |
cd04709 |
BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The ... |
102-307 |
3.74e-81 |
|
BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Pssm-ID: 240060 Cd Length: 164 Bit Score: 263.87 E-value: 3.74e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 102 DVVYRPGDCVYIESRrPNTPYFICSIQDFKLvhssqaccrspapafcdppacslpvapqppqhlseagrgpggSKRDHLL 181
Cdd:cd04709 1 ANMYRVGDYVYFESS-PNNPYLIRRIEELNK------------------------------------------TARGHVE 37
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 182 MNVKWYYRQSEVPDSVYQHLVQDRHNEND-SGRELVITDPVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFK 260
Cdd:cd04709 38 AKVVCYYRRRDIPDSLYQLADQHRRELEEkSDDLTPKQRHQLRHRELFLSRQVETLPATHIRGKCSVTLLNDTESARSYL 117
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1720409718 261 ARVDSFFYILGYNPETRRLNSTQGEIRVGPSHQAKLPDLQPFPSPDG 307
Cdd:cd04709 118 AREDTFFYSLVYDPEQKTLLADQGEIRVGPSYQAKLPDLQPFPSPDG 164
|
|
| SANT_MTA3_like |
cd11661 |
Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family ... |
395-440 |
1.32e-22 |
|
Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis.
Pssm-ID: 212559 [Multi-domain] Cd Length: 46 Bit Score: 91.91 E-value: 1.32e-22
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1720409718 395 CWTEDEVKRFVKGLRQYGKNFFRIRKELLPSKETGELITFYYYWKK 440
Cdd:cd11661 1 EWSESEAKLFEEGLRKYGKDFHDIRQDFLPWKSVGELVEFYYMWKK 46
|
|
| ZnF_GATA |
smart00401 |
zinc finger binding to DNA consensus sequence [AT]GATA[AG]; |
503-552 |
2.70e-15 |
|
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
Pssm-ID: 214648 [Multi-domain] Cd Length: 52 Bit Score: 71.30 E-value: 2.70e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1720409718 503 KGYACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGEL-PPIEKPVDPP 552
Cdd:smart00401 2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLkRPLSLKKDGI 52
|
|
| ZnF_GATA |
cd00202 |
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ... |
506-560 |
3.27e-15 |
|
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Pssm-ID: 238123 [Multi-domain] Cd Length: 54 Bit Score: 71.25 E-value: 3.27e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1720409718 506 ACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPvDPPPFMFKPVK 560
Cdd:cd00202 1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKR-KKDQIKRRNRK 54
|
|
| ELM2 |
pfam01448 |
ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown ... |
286-336 |
1.60e-12 |
|
ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex. The domain is usually found to the N terminus of a myb-like DNA binding domain pfam00249. ELM2 is also found associated with an ARID DNA binding domain pfam01388 in Swiss:O82364. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Pssm-ID: 460214 Cd Length: 53 Bit Score: 63.40 E-value: 1.60e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1720409718 286 IRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMP--GVSDCDLLMYLRAARS 336
Cdd:pfam01448 1 IRVGPRYQAEIPELLPPSEEEDRYEEEDELLVWDPnhNLPDRKLDEYLVVARS 53
|
|
| GATA |
pfam00320 |
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ... |
507-542 |
1.24e-11 |
|
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Pssm-ID: 425605 [Multi-domain] Cd Length: 36 Bit Score: 60.41 E-value: 1.24e-11
10 20 30
....*....|....*....|....*....|....*.
gi 1720409718 507 CRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGEL 542
Cdd:pfam00320 1 CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK 36
|
|
| BAH |
pfam01426 |
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been ... |
103-281 |
2.70e-10 |
|
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.
Pssm-ID: 460207 Cd Length: 120 Bit Score: 59.24 E-value: 2.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 103 VVYRPGDCVYIESRRPNTPYFICSIQDFklvhssqaccrspapaFCDPPACSLPVapqppqhlseagrgpggskrdhllm 182
Cdd:pfam01426 1 ETYSVGDFVLVEPDDADEPYYVARIEEL----------------FEDTKNGKKMV------------------------- 39
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 183 NVKWYYRQSEVPdsvyqHLVQDRHNEndsgrelvitdpviknRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFK-A 261
Cdd:pfam01426 40 RVQWFYRPEETV-----HRAGKAFNK----------------DELFLSDEEDDVPLSAIIGKCSVLHKSDLESLDPYKiK 98
|
170 180
....*....|....*....|
gi 1720409718 262 RVDSFFYILGYNPETRRLNS 281
Cdd:pfam01426 99 EPDDFFCELLYDPKTKSFKK 118
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
540-1025 |
8.12e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 64.19 E-value: 8.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 540 GELPPIEKPVDPPPFMFKPVKEeddglsgkhSMRTRRSRGSMSTLRSGRKKQPTSPDGRASPINE--DIRSSGRNSPSAA 617
Cdd:PHA03247 2549 GDPPPPLPPAAPPAAPDRSVPP---------PRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDrgDPRGPAPPSPLPP 2619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 618 STSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTEDTDRITSKKTKTqeiSRPNSPSEGEGESSDSRSVNDEG 697
Cdd:PHA03247 2620 DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRA---AQASSPPQRPRRRAARPTVGSLT 2696
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 698 SS-----DPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPAlqaPSGAASAPSTAPPGTPQLPTQGPTPSATA 772
Cdd:PHA03247 2697 SLadpppPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV---PAGPATPGGPARPARPPTTAGPPAPAPPA 2773
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 773 VPPQGSPATSQPPNQTQSTVAPAAhthiqqAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTG 852
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRES------LPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP 2847
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 853 PLLQHPGPPQPFG-LPSQPSQGQGPLGPSPAAAHPHSTIQLPA-SQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQ 930
Cdd:PHA03247 2848 PSLPLGGSVAPGGdVRRRPPSRSPAAKPAAPARPPVRRLARPAvSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 931 LPAPQAHKHPPHLSGPSPFSLNANLPPPPALKPLSSLSTHHPPSAHPPPLQLmPQSQPLPSSPAQPPGLTQSQSLPPPAA 1010
Cdd:PHA03247 2928 QPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRV-PQPAPSREAPASSTPPLTGHSLSRVSS 3006
|
490
....*....|....*
gi 1720409718 1011 SHPTTGLHQVPSQSP 1025
Cdd:PHA03247 3007 WASSLALHEETDPPP 3021
|
|
| BAH |
smart00439 |
Bromo adjacent homology domain; |
105-281 |
1.23e-09 |
|
Bromo adjacent homology domain;
Pssm-ID: 214664 [Multi-domain] Cd Length: 121 Bit Score: 57.69 E-value: 1.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 105 YRPGDCVYIESRRPNTPYFICSIQDFklvhssqaccrspapaFCDPpacslpvapqppqhlseagrgpGGSKRDHLlmNV 184
Cdd:smart00439 2 ISVGDFVLVEPDDADEPYYIGRIEEI----------------FETK----------------------KNSESKMV--RV 41
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 185 KWYYRQSEVPdsvyqHLVQDRHNENdsgrelvitdpviknrELFISDYVDTYHAAALRGKCNISHFSDIF--AAREFKAR 262
Cdd:smart00439 42 RWFYRPEETV-----LEKAALFDKN----------------EVFLSDEYDTVPLSDIIGKCNVLYKSDYPglRPEGSIGE 100
|
170
....*....|....*....
gi 1720409718 263 VDSFFYILGYNPETRRLNS 281
Cdd:smart00439 101 PDVFFCESAYDPEKGSFKK 119
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
545-729 |
2.25e-08 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 59.15 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 545 IEKPVDPP----PFMFKPVKEEDDGLSGKHSMRTRRSR------GSMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSP 614
Cdd:NF033609 539 IDKPVVPEqpdePGEIEPIPEDSDSDPGSDSGSDSSNSdsgsdsGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDS 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 615 SAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTE-DTDRITSKKTKTQEISRPNSPSEGEGES-SDSRS 692
Cdd:NF033609 619 ASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDS 698
|
170 180 190
....*....|....*....|....*....|....*..
gi 1720409718 693 VNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 729
Cdd:NF033609 699 DSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 734
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
600-760 |
1.73e-05 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 49.52 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 600 SPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTE-DTDRITSKKTKTQEISRPN 678
Cdd:NF033609 716 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSDSDSDSDSDSD 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 679 SPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPS-IPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPP 756
Cdd:NF033609 796 SDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNNVVPP 875
|
....
gi 1720409718 757 GTPQ 760
Cdd:NF033609 876 NSPK 879
|
|
| SANT |
smart00717 |
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
396-441 |
6.65e-05 |
|
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 41.83 E-value: 6.65e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1720409718 396 WTEDEVKRFVKGLRQYG-KNFFRIRKElLPSKETGELITFYYYWKKT 441
Cdd:smart00717 4 WTEEEDELLIELVKKYGkNNWEKIAKE-LPGRTAEQCRERWRNLLKP 49
|
|
| Myb_DNA-binding |
pfam00249 |
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
396-439 |
1.90e-04 |
|
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.
Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 40.56 E-value: 1.90e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1720409718 396 WTEDEVKRFVKGLRQYGKNFFRIrKELLPSKETGELITFYYYWK 439
Cdd:pfam00249 4 WTPEEDELLLEAVEKLGNRWKKI-AKLLPGRTDNQCKNRWQNYL 46
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
580-729 |
2.00e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 46.06 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 580 SMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTE 659
Cdd:NF033609 630 SASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 709
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720409718 660 -DTDRITSKKTKTQEISRPNSPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 729
Cdd:NF033609 710 sDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 780
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
580-729 |
3.56e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 45.29 E-value: 3.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 580 SMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTe 659
Cdd:NF033609 654 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS- 732
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720409718 660 DTDRITSKKTKTQEISRPNSPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 729
Cdd:NF033609 733 DSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 802
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
650-782 |
6.21e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 40.65 E-value: 6.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 650 QREKVASDTEDTDRITSKKTKTQ-EISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDN---------RSTSPSIPSPQ 719
Cdd:TIGR00601 9 QQQKFKIDMEPDETVKELKEKIEaEQGKDAYPVAQQKLIYSGKILSDDKTVKEYKIKEKDfvvvmvskpKTGTGKVAPPA 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720409718 720 DNESDSDSSAqqqmlqAQPPALQAPSGAASAPSTAPPGTP---QLPTQGPTPSATAVPPQGSPATS 782
Cdd:TIGR00601 89 ATPTSAPTPT------PSPPASPASGMSAAPASAVEEKSPseeSATATAPESPSTSVPSSGSDAAS 148
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
568-1558 |
0e+00 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 1214.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 568 GKHSMRTRRSRGSMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKST 647
Cdd:pfam03154 1 GKHSMRTRRSRGSMSTLRSGRKKQTASPDGRASPTNEDLRSSGRNSPSAASTSSNDSKAESMKKSSKKIKEEAPSPLKSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 648 KRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDS 727
Cdd:pfam03154 81 KRQREKGASDTEEPERATAKKSKTQEISRPNSPSEGEGESSDGRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 728 SAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPaaHTHIQQAPTLH 807
Cdd:pfam03154 161 SAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAP--HTLIQQTPTLH 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 808 PPRLPSPHPPLQPMT--APPSQSSAQPHPQPSLHSQGPPGPHSLQTGP-LLQHPGPPQPFGLPSQPSQGQGPLGPSPAAA 884
Cdd:pfam03154 239 PQRLPSPHPPLQPMTqpPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPsHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 885 HP-HSTIQLPASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSLNANLPPPPALKP 963
Cdd:pfam03154 319 GQsQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSNLPPPPALKP 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 964 LSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTT-GLHQVPSQSPFPQHPFVPGGPPPITPP 1042
Cdd:pfam03154 399 LSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTsGLHQVPSQSPFPQHPFVPGGPPPITPP 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1043 SCPPTSTPPAGPSSSSQPPcsAAVSSGGSVPGAPSCPLPAVQIKEEALDEAEEPESPPPPPRSPSPEPTVVDTPSHASQS 1122
Cdd:pfam03154 479 SGPPTSTSSAMPGIQPPSS--ASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSPSPEPTVVNTPSHASQS 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1123 ARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAqKAS 1202
Cdd:pfam03154 557 ARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEALEKAKREAEQKAREEKEREKEKEKEREREREREREAERAA-KAS 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1203 SSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNRNHPFYMPLNPTDPLLAYHM 1282
Cdd:pfam03154 636 SSSHEGRMGDPQLAGPAHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNRNHPFFVPLNPTDPLLAYHM 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1283 PGLYNVDPTIRERELREREIREREIRERELRERMKPGFEVKPPELDPLHPATNPMEHFARHSALTIPPAAGPHPFASFHP 1362
Cdd:pfam03154 716 PGLYNVDPAIRERELREREIREREIRERELRERMKPGFEVKPPELDPLHPATNPMEHFARHGALTLPPMAGPHPFASFHP 795
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1363 GLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSA 1442
Cdd:pfam03154 796 GLNPLERERLALAGPQLRPEMSYPDRLAAERLHAERMASLTNDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSG 875
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 1443 GPVHPLVDPLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRDLPGAIPPPMSAAHQLQAMHAQSAELQR 1522
Cdd:pfam03154 876 GPVHPLVDPLAAGPHLARFPYPPGAIPNPLLGQPPHEHEMLRHPVFGTPYPRDLPGGLPPPMSAAHQLQAMHAQSAELQR 955
|
970 980 990
....*....|....*....|....*....|....*.
gi 1720409718 1523 LAMEQQWLHGHPHMHGGHLPSQEDYYSRLKKEGDKQ 1558
Cdd:pfam03154 956 LAMEQQWLHGHPHMHGGHLPGQEDYYSRLKKESDKQ 991
|
|
| BAH_MTA |
cd04709 |
BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The ... |
102-307 |
3.74e-81 |
|
BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Pssm-ID: 240060 Cd Length: 164 Bit Score: 263.87 E-value: 3.74e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 102 DVVYRPGDCVYIESRrPNTPYFICSIQDFKLvhssqaccrspapafcdppacslpvapqppqhlseagrgpggSKRDHLL 181
Cdd:cd04709 1 ANMYRVGDYVYFESS-PNNPYLIRRIEELNK------------------------------------------TARGHVE 37
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 182 MNVKWYYRQSEVPDSVYQHLVQDRHNEND-SGRELVITDPVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFK 260
Cdd:cd04709 38 AKVVCYYRRRDIPDSLYQLADQHRRELEEkSDDLTPKQRHQLRHRELFLSRQVETLPATHIRGKCSVTLLNDTESARSYL 117
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1720409718 261 ARVDSFFYILGYNPETRRLNSTQGEIRVGPSHQAKLPDLQPFPSPDG 307
Cdd:cd04709 118 AREDTFFYSLVYDPEQKTLLADQGEIRVGPSYQAKLPDLQPFPSPDG 164
|
|
| SANT_MTA3_like |
cd11661 |
Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family ... |
395-440 |
1.32e-22 |
|
Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis.
Pssm-ID: 212559 [Multi-domain] Cd Length: 46 Bit Score: 91.91 E-value: 1.32e-22
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1720409718 395 CWTEDEVKRFVKGLRQYGKNFFRIRKELLPSKETGELITFYYYWKK 440
Cdd:cd11661 1 EWSESEAKLFEEGLRKYGKDFHDIRQDFLPWKSVGELVEFYYMWKK 46
|
|
| ZnF_GATA |
smart00401 |
zinc finger binding to DNA consensus sequence [AT]GATA[AG]; |
503-552 |
2.70e-15 |
|
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
Pssm-ID: 214648 [Multi-domain] Cd Length: 52 Bit Score: 71.30 E-value: 2.70e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1720409718 503 KGYACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGEL-PPIEKPVDPP 552
Cdd:smart00401 2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLkRPLSLKKDGI 52
|
|
| ZnF_GATA |
cd00202 |
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ... |
506-560 |
3.27e-15 |
|
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Pssm-ID: 238123 [Multi-domain] Cd Length: 54 Bit Score: 71.25 E-value: 3.27e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1720409718 506 ACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPvDPPPFMFKPVK 560
Cdd:cd00202 1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKR-KKDQIKRRNRK 54
|
|
| ELM2 |
pfam01448 |
ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown ... |
286-336 |
1.60e-12 |
|
ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex. The domain is usually found to the N terminus of a myb-like DNA binding domain pfam00249. ELM2 is also found associated with an ARID DNA binding domain pfam01388 in Swiss:O82364. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Pssm-ID: 460214 Cd Length: 53 Bit Score: 63.40 E-value: 1.60e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1720409718 286 IRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMP--GVSDCDLLMYLRAARS 336
Cdd:pfam01448 1 IRVGPRYQAEIPELLPPSEEEDRYEEEDELLVWDPnhNLPDRKLDEYLVVARS 53
|
|
| GATA |
pfam00320 |
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ... |
507-542 |
1.24e-11 |
|
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Pssm-ID: 425605 [Multi-domain] Cd Length: 36 Bit Score: 60.41 E-value: 1.24e-11
10 20 30
....*....|....*....|....*....|....*.
gi 1720409718 507 CRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGEL 542
Cdd:pfam00320 1 CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK 36
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
732-898 |
1.39e-10 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 66.21 E-value: 1.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 732 QM-LQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQgspatsQPPNQTQSTVAPAAHTHIQQAPtlhppr 810
Cdd:pfam09770 202 AMrAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQ------QQPQQPQQHPGQGHPVTILQRP------ 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 811 lpsphpplQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQtgpLLQHP-------------GPPQPFGLPSQPSQGQGPL 877
Cdd:pfam09770 270 --------QSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQ---ILQNPnrlsaarvgypqnPQPGVQPAPAHQAHRQQGS 338
|
170 180
....*....|....*....|...
gi 1720409718 878 --GPSPAAAHPHSTIQLPASQSA 898
Cdd:pfam09770 339 fgRQAPIITHPQQLAQLSEEEKA 361
|
|
| BAH |
pfam01426 |
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been ... |
103-281 |
2.70e-10 |
|
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.
Pssm-ID: 460207 Cd Length: 120 Bit Score: 59.24 E-value: 2.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 103 VVYRPGDCVYIESRRPNTPYFICSIQDFklvhssqaccrspapaFCDPPACSLPVapqppqhlseagrgpggskrdhllm 182
Cdd:pfam01426 1 ETYSVGDFVLVEPDDADEPYYVARIEEL----------------FEDTKNGKKMV------------------------- 39
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 183 NVKWYYRQSEVPdsvyqHLVQDRHNEndsgrelvitdpviknRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFK-A 261
Cdd:pfam01426 40 RVQWFYRPEETV-----HRAGKAFNK----------------DELFLSDEEDDVPLSAIIGKCSVLHKSDLESLDPYKiK 98
|
170 180
....*....|....*....|
gi 1720409718 262 RVDSFFYILGYNPETRRLNS 281
Cdd:pfam01426 99 EPDDFFCELLYDPKTKSFKK 118
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
540-1025 |
8.12e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 64.19 E-value: 8.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 540 GELPPIEKPVDPPPFMFKPVKEeddglsgkhSMRTRRSRGSMSTLRSGRKKQPTSPDGRASPINE--DIRSSGRNSPSAA 617
Cdd:PHA03247 2549 GDPPPPLPPAAPPAAPDRSVPP---------PRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDrgDPRGPAPPSPLPP 2619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 618 STSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTEDTDRITSKKTKTqeiSRPNSPSEGEGESSDSRSVNDEG 697
Cdd:PHA03247 2620 DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRA---AQASSPPQRPRRRAARPTVGSLT 2696
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 698 SS-----DPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPAlqaPSGAASAPSTAPPGTPQLPTQGPTPSATA 772
Cdd:PHA03247 2697 SLadpppPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV---PAGPATPGGPARPARPPTTAGPPAPAPPA 2773
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 773 VPPQGSPATSQPPNQTQSTVAPAAhthiqqAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTG 852
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRES------LPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP 2847
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 853 PLLQHPGPPQPFG-LPSQPSQGQGPLGPSPAAAHPHSTIQLPA-SQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQ 930
Cdd:PHA03247 2848 PSLPLGGSVAPGGdVRRRPPSRSPAAKPAAPARPPVRRLARPAvSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 931 LPAPQAHKHPPHLSGPSPFSLNANLPPPPALKPLSSLSTHHPPSAHPPPLQLmPQSQPLPSSPAQPPGLTQSQSLPPPAA 1010
Cdd:PHA03247 2928 QPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRV-PQPAPSREAPASSTPPLTGHSLSRVSS 3006
|
490
....*....|....*
gi 1720409718 1011 SHPTTGLHQVPSQSP 1025
Cdd:PHA03247 3007 WASSLALHEETDPPP 3021
|
|
| BAH |
smart00439 |
Bromo adjacent homology domain; |
105-281 |
1.23e-09 |
|
Bromo adjacent homology domain;
Pssm-ID: 214664 [Multi-domain] Cd Length: 121 Bit Score: 57.69 E-value: 1.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 105 YRPGDCVYIESRRPNTPYFICSIQDFklvhssqaccrspapaFCDPpacslpvapqppqhlseagrgpGGSKRDHLlmNV 184
Cdd:smart00439 2 ISVGDFVLVEPDDADEPYYIGRIEEI----------------FETK----------------------KNSESKMV--RV 41
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 185 KWYYRQSEVPdsvyqHLVQDRHNENdsgrelvitdpviknrELFISDYVDTYHAAALRGKCNISHFSDIF--AAREFKAR 262
Cdd:smart00439 42 RWFYRPEETV-----LEKAALFDKN----------------EVFLSDEYDTVPLSDIIGKCNVLYKSDYPglRPEGSIGE 100
|
170
....*....|....*....
gi 1720409718 263 VDSFFYILGYNPETRRLNS 281
Cdd:smart00439 101 PDVFFCESAYDPEKGSFKK 119
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
545-729 |
2.25e-08 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 59.15 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 545 IEKPVDPP----PFMFKPVKEEDDGLSGKHSMRTRRSR------GSMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSP 614
Cdd:NF033609 539 IDKPVVPEqpdePGEIEPIPEDSDSDPGSDSGSDSSNSdsgsdsGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDS 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 615 SAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTE-DTDRITSKKTKTQEISRPNSPSEGEGES-SDSRS 692
Cdd:NF033609 619 ASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDS 698
|
170 180 190
....*....|....*....|....*....|....*..
gi 1720409718 693 VNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 729
Cdd:NF033609 699 DSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 734
|
|
| BAH_fungalPHD |
cd04710 |
BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. ... |
101-278 |
5.61e-08 |
|
BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Pssm-ID: 240061 Cd Length: 135 Bit Score: 53.14 E-value: 5.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 101 DDVVYRPGDCVYIESRRPNTPYFICSIQDFklvhssqaccrspapafcdppacsLPVAPQPPQHLSEAGRGPGGSKRdhl 180
Cdd:cd04710 8 NGELLKVNDHIYMSSEPPGEPYYIGRIMEF------------------------VPKHEFPSGIHARVFPASYFQVR--- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 181 lMNvkWYYRQSEVpdsvyqhlvqDRHNENDSgrelvitdpviknRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFK 260
Cdd:cd04710 61 -LN--WYYRPRDI----------SRRVVADS-------------RLLYASMHSDICPIGSVRGKCTVRHRDQIPDLEEYK 114
|
170
....*....|....*...
gi 1720409718 261 ARVDSFFYILGYNPETRR 278
Cdd:cd04710 115 KRPNHFYFDQLFDRYILR 132
|
|
| BAH |
cd04370 |
BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). ... |
105-277 |
6.35e-08 |
|
BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Pssm-ID: 239835 [Multi-domain] Cd Length: 123 Bit Score: 52.78 E-value: 6.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 105 YRPGDCVYIE--SRRPNTPYFICSIQDFklvhssqaccrspapaFCDPpacslpvapqppqhlseagrgpggskRDHLLM 182
Cdd:cd04370 4 YEVGDSVYVEpdDSIKSDPPYIARIEEL----------------WEDT--------------------------NGSKQV 41
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 183 NVKWYYRQSEVPDSVYQHlvqdrHNEndsgrelvitdpviknRELFISDYVDTYHAAALRGKCNISHFSDIF--AAREFK 260
Cdd:cd04370 42 KVRWFYRPEETPKGLSPF-----ALR----------------RELFLSDHLDEIPVESIIGKCKVLFVSEFEglKQRPNK 100
|
170
....*....|....*..
gi 1720409718 261 ARVDSFFYILGYNPETR 277
Cdd:cd04370 101 IDTDDFFCRLAYDPTTK 117
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
664-1030 |
2.04e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.10 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 664 ITSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSAQQQMLQAQPPALQA 743
Cdd:PHA03247 2582 VTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS-PAANEPDPHPPPTVPPPERPRDDPAPGR 2660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 744 PSGAASAPSTAPPGTPQLPTQGPTPSAtAVPPQGSPATSQPPNQTQSTVAPAahthiqqaPTLHPPRLPsphpplqpmTA 823
Cdd:PHA03247 2661 VSRPRRARRLGRAAQASSPPQRPRRRA-ARPTVGSLTSLADPPPPPPTPEPA--------PHALVSATP---------LP 2722
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 824 PPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPASQSALQPQQ 903
Cdd:PHA03247 2723 PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW 2802
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 904 PPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSLNA------------NLPPPPALKPLSSLSTHH 971
Cdd:PHA03247 2803 DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLggsvapggdvrrRPPSRSPAAKPAAPARPP 2882
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 972 PPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGLHQVPSQSP-FPQHP 1030
Cdd:PHA03247 2883 VRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPpRPQPP 2942
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
734-886 |
3.18e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 55.38 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 734 LQAQPPALQAPSGAASAPSTAPPGTPQL-------PTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTL 806
Cdd:PRK07764 580 GDWQVEAVVGPAPGAAGGEGPPAPASSGppeeaarPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAV 659
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 807 HPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGP-PQPFGLPSQPSQGQGPLGPSPAAAH 885
Cdd:PRK07764 660 PDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQaDDPAAQPPQAAQGASAPSPAADDPV 739
|
.
gi 1720409718 886 P 886
Cdd:PRK07764 740 P 740
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
716-886 |
3.37e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.99 E-value: 3.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 716 PSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPA 795
Cdd:PRK07764 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 796 AHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLH------SQGPPGPHSLQTGPLLQHPG-PPQPFGLPS 868
Cdd:PRK07764 677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQppqaaqGASAPSPAADDPVPLPPEPDdPPDPAGAPA 756
|
170
....*....|....*...
gi 1720409718 869 QPSQGQGPLGPSPAAAHP 886
Cdd:PRK07764 757 QPPPPPAPAPAAAPAAAP 774
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
708-1137 |
5.97e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.56 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 708 NRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSG------AASAPSTAPPGTPQLPTQGPTPSATAV-PPQGSPA 780
Cdd:PHA03247 2565 DRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDdrgdprGPAPPSPLPPDTHAPDPPPPSPSPAANePDPHPPP 2644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 781 TSQPPNQTQSTVAPAA-----HTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHS---LQTG 852
Cdd:PHA03247 2645 TVPPPERPRDDPAPGRvsrprRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSatpLPPG 2724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 853 PLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHStiqlPASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLP 932
Cdd:PHA03247 2725 PAAARQASPALPAAPAPPAVPAGPATPGGPARPARP----PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS 2800
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 933 APQAHKHPPHLSGPSPFSLNANLPPPPALKPLSSLSTHHPPSAHPPPLQL--------------MPQSQPLPSSPAQPPG 998
Cdd:PHA03247 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLplggsvapggdvrrRPPSRSPAAKPAAPAR 2880
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 999 lTQSQSLPPPAASHPTTGLHQVPSQSPFPQHPfvPGGPPPITPPSCPPTSTPPAGPSSSSQPPCSAAVSSGGSVPGAPSC 1078
Cdd:PHA03247 2881 -PPVRRLARPAVSRSTESFALPPDQPERPPQP--QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSG 2957
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720409718 1079 PLPAVQikeeaLDEAEEPESPPPPPRSPSPEPTVvdtPSHASQSARFYKHLDRGYNSCA 1137
Cdd:PHA03247 2958 AVPQPW-----LGALVPGRVAVPRFRVPQPAPSR---EAPASSTPPLTGHSLSRVSSWA 3008
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
723-878 |
8.43e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.84 E-value: 8.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 723 SDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPAtsqPPNQTQSTVAPAAhthiQQ 802
Cdd:PRK07764 367 ASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPA---PAAAPQPAPAPAP----AP 439
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720409718 803 APTlhpPRLPSPHPPLQPMTAPPSQSSAQPHPQPslhsQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLG 878
Cdd:PRK07764 440 APP---SPAGNAPAGGAPSPPPAAAPSAQPAPAP----AAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
542-953 |
3.67e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 52.25 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 542 LPPIEKPVDPPPFMFKPVKEEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPTSPD--GRASPINEDIRSSGRNSPSAAST 619
Cdd:PHA03247 2617 LPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGraAQASSPPQRPRRRAARPTVGSLT 2696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 620 SSNDSKAETVKKSAKKVKEEAASPL---KSTKRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEGESSDSRSVNDE 696
Cdd:PHA03247 2697 SLADPPPPPPTPEPAPHALVSATPLppgPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA 2776
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 697 GSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTA---PPGTPQLPTQGPTPSATAV 773
Cdd:PHA03247 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAqptAPPPPPGPPPPSLPLGGSV 2856
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 774 PPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPH-SLQTG 852
Cdd:PHA03247 2857 APGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQpPPPPP 2936
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 853 PLLQHPGPPQPFGLPSQPSQGQGP-----------------LGPSPAAA-------------HPHSTIQLPASQSALQPQ 902
Cdd:PHA03247 2937 PRPQPPLAPTTDPAGAGEPSGAVPqpwlgalvpgrvavprfRVPQPAPSreapasstppltgHSLSRVSSWASSLALHEE 3016
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 903 QPP-----------------REQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLS------------GPSPFSLNA 953
Cdd:PHA03247 3017 TDPppvslkqtlwppddtedSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPeagarespssqfGPPPLSANA 3096
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
547-892 |
6.54e-06 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 51.24 E-value: 6.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 547 KPVDPPPFMFKPVKE----EDDGLSGKHS-----MRTRRSRGSMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAA 617
Cdd:PRK10263 500 KPARPPLYYFEEVEEkrarEREQLAAWYQpipepVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAA 579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 618 STSSNDSKAETVKKSAKKVKEEAASPLKSTKR----QREKVAS--DTEDTDRITSKKTKTQEISRPNSPSEGEGESSDSR 691
Cdd:PRK10263 580 TVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRirvpTRRELASygIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAM 659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 692 SvNDE-----GSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGA------------------- 747
Cdd:PRK10263 660 Q-QDElarqfAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGAnpfslddfefspmkalldd 738
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 748 -ASAPSTAPPGTP-QLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPP 825
Cdd:PRK10263 739 gPHEPLFTPIVEPvQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 818
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720409718 826 S-QSSAQPHPQPSLHSQGP-PGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQL 892
Cdd:PRK10263 819 QpQQPVAPQPQYQQPQQPVaPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFAL 887
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
736-854 |
9.50e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 50.10 E-value: 9.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 736 AQPPAlqAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAhthiqqAPTLHPPRLPSPH 815
Cdd:PRK14951 382 ARPEA--AAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA------APAAVALAPAPPA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1720409718 816 PPLQPMTAPPSQSSAQPH-PQPSLHSQGPPGPHSLQTGPL 854
Cdd:PRK14951 454 QAAPETVAIPVRVAPEPAvASAAPAPAAAPAAARLTPTEE 493
|
|
| PLN02967 |
PLN02967 |
kinase |
558-687 |
1.44e-05 |
|
kinase
Pssm-ID: 215521 [Multi-domain] Cd Length: 581 Bit Score: 49.66 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 558 PVKEEDDGLSGKHSMRTRRSRgsmstlRSGRKKQPTSPDGRASPINEDIRssgrNSPSAASTSSNDSKAETVKKSA---K 634
Cdd:PLN02967 57 AVDEEPDENGAVSKKKPTRSV------KRATKKTVVEISEPLEEGSELVV----NEDAALDKESKKTPRRTRRKAAaasS 126
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1720409718 635 KVKEEAASPLKSTKRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEGES 687
Cdd:PLN02967 127 DVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEEL 179
|
|
| PRK10856 |
PRK10856 |
cytoskeleton protein RodZ; |
717-798 |
1.45e-05 |
|
cytoskeleton protein RodZ;
Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 48.87 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 717 SPQDNES---DSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVA 793
Cdd:PRK10856 155 SQNSGQSvplDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGA 234
|
....*
gi 1720409718 794 PAAHT 798
Cdd:PRK10856 235 APLPT 239
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
600-760 |
1.73e-05 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 49.52 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 600 SPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTE-DTDRITSKKTKTQEISRPN 678
Cdd:NF033609 716 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSDSDSDSDSDSD 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 679 SPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPS-IPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPP 756
Cdd:NF033609 796 SDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNNVVPP 875
|
....
gi 1720409718 757 GTPQ 760
Cdd:NF033609 876 NSPK 879
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
709-850 |
1.74e-05 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 49.65 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 709 RSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTP-------SATAVPPQGSPAT 781
Cdd:pfam09770 204 RAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVtilqrpqSPQPDPAQPSIQP 283
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720409718 782 SQPPNQTQSTVAPAAHTHIQQAPTLhpPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPP---GPHSLQ 850
Cdd:pfam09770 284 QAQQFHQQPPPVPVQPTQILQNPNR--LSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPiitHPQQLA 353
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
665-846 |
2.26e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.21 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 665 TSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSA--QQQMLQAQPPALQ 742
Cdd:PRK07764 600 PPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDggDGWPAKAGGAAPA 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 743 APSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMT 822
Cdd:PRK07764 680 APPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPP 759
|
170 180
....*....|....*....|....
gi 1720409718 823 APPSQSSAQPHPQPSLHSQGPPGP 846
Cdd:PRK07764 760 PPPAPAPAAAPAAAPPPSPPSEEE 783
|
|
| SANT |
smart00717 |
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
396-441 |
6.65e-05 |
|
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 41.83 E-value: 6.65e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1720409718 396 WTEDEVKRFVKGLRQYG-KNFFRIRKElLPSKETGELITFYYYWKKT 441
Cdd:smart00717 4 WTEEEDELLIELVKKYGkNNWEKIAKE-LPGRTAEQCRERWRNLLKP 49
|
|
| SANT |
cd00167 |
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
396-439 |
6.74e-05 |
|
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 41.79 E-value: 6.74e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1720409718 396 WTEDEVKRFVKGLRQYG-KNFFRIRKElLPSKETGELITFYYYWK 439
Cdd:cd00167 2 WTEEEDELLLEAVKKYGkNNWEKIAKE-LPGRTPKQCRERWRNLL 45
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
736-947 |
6.95e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.56 E-value: 6.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 736 AQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPnqtqstvAPAAHTHIQQAPTLHPPrlpsph 815
Cdd:PRK12323 379 AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSP-------APEALAAARQASARGPG------ 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 816 pplqPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPllqhPGPPQPFGLPSQPSQGQGP---LGPSPAAAHPHSTIQL 892
Cdd:PRK12323 446 ----GAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAA----PARAAPAAAPAPADDDPPPweeLPPEFASPAPAQPDAA 517
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1720409718 893 PASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPS 947
Cdd:PRK12323 518 PAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
691-796 |
1.04e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 47.19 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 691 RSVNDEGSSDPK--DIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPgTPQLPTQGPTP 768
Cdd:PRK12270 17 QYLADPNSVDPSwrEFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPP-KPAAAAAAAAA 95
|
90 100 110
....*....|....*....|....*....|.
gi 1720409718 769 SATAVPPQGSPATSQPPNQTQSTV---APAA 796
Cdd:PRK12270 96 PAAPPAAAAAAAPAAAAVEDEVTPlrgAAAA 126
|
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
637-863 |
1.08e-04 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 46.21 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 637 KEEAASPLKSTKRQREKVASDTEDTDR-ITSKKTKTQEISRPNSPSEGeGESSDSRSVNDEGSSDPKDIDQDNRSTSPSI 715
Cdd:PRK10927 58 KKEESETLQSQKVTGNGLPPKPEERWRyIKELESRQPGVRAPTEPSAG-GEVKTPEQLTPEQRQLLEQMQADMRQQPTQL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 716 PSPQDNESDSDSsaQQQMLQAQPpalQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPatsQPPNQTQStvapa 795
Cdd:PRK10927 137 VEVPWNEQTPEQ--RQQTLQRQR---QAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQP---RQSKPAST----- 203
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720409718 796 ahthiqQAPtlhpprlpsphppLQPMTAPPSQSSAQPHPQpslhsqgppgphslQTGPLLQHPGPPQP 863
Cdd:PRK10927 204 ------QQP-------------YQDLLQTPAHTTAQSKPQ--------------QAAPVTRAADAPKP 238
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
623-793 |
1.67e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 46.26 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 623 DSKAETVKKSAKKVKEEAAsPLKSTKRQREKVASDTEdtdriTSKKTKTQEISRPNSPSEGEGESSDSRSVNdEGSSDPK 702
Cdd:PRK14949 630 SPKEGDGKKSSADRKPKTP-PSRAPPASLSKPASSPD-----ASQTSASFDLDPDFELATHQSVPEAALASG-SAPAPPP 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 703 DIDQDNRstsPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATS 782
Cdd:PRK14949 703 VPDPYDR---PPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQ 779
|
170
....*....|.
gi 1720409718 783 QPPNQTQSTVA 793
Cdd:PRK14949 780 DTELNLVLLSS 790
|
|
| Myb_DNA-binding |
pfam00249 |
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
396-439 |
1.90e-04 |
|
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.
Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 40.56 E-value: 1.90e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1720409718 396 WTEDEVKRFVKGLRQYGKNFFRIrKELLPSKETGELITFYYYWK 439
Cdd:pfam00249 4 WTPEEDELLLEAVEKLGNRWKKI-AKLLPGRTDNQCKNRWQNYL 46
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
580-729 |
2.00e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 46.06 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 580 SMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTE 659
Cdd:NF033609 630 SASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 709
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720409718 660 -DTDRITSKKTKTQEISRPNSPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 729
Cdd:NF033609 710 sDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 780
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
735-855 |
2.53e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 45.48 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 735 QAQPPALQAPSGAASAPSTAPPGTPQLPTQGPT---PSATAVPPQGSPATSQPPNqtQSTVAPAAHTHIQQAPTLHPPRL 811
Cdd:PRK14951 387 AAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAaapPAPVAAPAAAAPAAAPAAA--PAAVALAPAPPAQAAPETVAIPV 464
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1720409718 812 PSPHPPLQPMTAPPSqssaQPHPQPSLHSQGPPGPHSLQTGPLL 855
Cdd:PRK14951 465 RVAPEPAVASAAPAP----AAAPAAARLTPTEEGDVWHATVQQL 504
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
580-729 |
3.56e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 45.29 E-value: 3.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 580 SMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTe 659
Cdd:NF033609 654 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS- 732
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720409718 660 DTDRITSKKTKTQEISRPNSPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 729
Cdd:NF033609 733 DSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 802
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
537-847 |
4.08e-04 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 45.07 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 537 KKYGELPPIEK---------PVDPPPFMFKPVKEEDDGLSGKHSmrtRRSRGSMSTLRSGRKKQPTSPDGRASPinediR 607
Cdd:PTZ00449 491 KSKKKLAPIEEedsdkhdepPEGPEASGLPPKAPGDKEGEEGEH---EDSKESDEPKEGGKPGETKEGEVGKKP-----G 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 608 SSGRNSPSAASTSSNDSKAETVKKSAKKVKEEaasplKSTKRQRekvaSDTEDTDRITSKKTKTQEI----SRPNSPSEG 683
Cdd:PTZ00449 563 PAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEP-----KKPKRPR----SAQRPTRPKSPKLPELLDIpkspKRPESPKSP 633
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 684 EGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIP-SPQDNES--DSDSSAQQQMLQAQPPALQAPSGAASAPSTAP--PGT 758
Cdd:PTZ00449 634 KRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPfDPKFKEKfyDDYLDAAAKSKETKTTVVLDESFESILKETLPetPGT 713
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 759 P-----QLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQP----MTAPPSQSS 829
Cdd:PTZ00449 714 PfttprPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEdihaETGEPDEAM 793
|
330
....*....|....*...
gi 1720409718 830 AQPHpQPSLHSQGPPGPH 847
Cdd:PTZ00449 794 KRPD-SPSEHEDKPPGDH 810
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
709-880 |
4.50e-04 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 44.82 E-value: 4.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 709 RSTSPSIPSPQDNESDSDSSAQQQMLQAQP--PALQAPSGAASAPSTAPPGTPQLPTQGPTPSAtavpPQGSPATSQPPn 786
Cdd:PRK14086 115 RRPYEGYGGPRADDRPPGLPRQDQLPTARPayPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRA----PYASPASYAPE- 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 787 qtQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQpmtaPPSQSSAQPHPQPS---LHSQGPPGPHSLQTGPLLQHPGPPQP 863
Cdd:PRK14086 190 --QERDREPYDAGRPEYDQRRRDYDHPRPDWDR----PRRDRTDRPEPPPGaghVHRGGPGPPERDDAPVVPIRPSAPGP 263
|
170
....*....|....*..
gi 1720409718 864 FglPSQPSQGQGPLGPS 880
Cdd:PRK14086 264 L--AAQPAPAPGPGEPT 278
|
|
| PRK10905 |
PRK10905 |
cell division protein DamX; Validated |
679-895 |
4.90e-04 |
|
cell division protein DamX; Validated
Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 44.16 E-value: 4.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 679 SPSEGEGESSDSRSVNDEGSSDpkdiDQDNRSTspsiPSP-QDNESDSDSSAQQQMlqAQPPALQAPSGAASAPstAPPG 757
Cdd:PRK10905 24 STSSSDQTASGEKSIDLAGNAT----DQANGVQ----PAPgTTSAEQTAGNTQQDV--SLPPISSTPTQGQTPV--ATDG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 758 TPQLPTQG------------------------PTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPS 813
Cdd:PRK10905 92 QQRVEVQGdlnnaltqpqnqqqlnnvavnstlPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQAT 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 814 PHPPLQPMTAPP--SQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQ 891
Cdd:PRK10905 172 AKTEPKPVAQTPkrTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLKSAPSSHYTLQ 251
|
....
gi 1720409718 892 LPAS 895
Cdd:PRK10905 252 LSSS 255
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
713-876 |
5.73e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 44.47 E-value: 5.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 713 PSIPSPQDNESD----SDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQgspATSQPPNQT 788
Cdd:PRK07994 361 PAAPLPEPEVPPqsaaPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ---LQRAQGATK 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 789 QSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPS 868
Cdd:PRK07994 438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLA 517
|
....*...
gi 1720409718 869 QPSQGQGP 876
Cdd:PRK07994 518 AEAIERDP 525
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
725-1013 |
6.01e-04 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 44.64 E-value: 6.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 725 SDSSAQQQML-QAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATA------------------------VPPQGSP 779
Cdd:pfam09770 92 SDAIEEEQVRfNRQQPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVrtgyekykepepipdlqvdaslwgVAPKKAA 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 780 ATSQPPnqtqsTVAPAAHTHIQQAPTLHPPRLPSPHPPLQpmTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPG 859
Cdd:pfam09770 172 APAPAP-----QPAAQPASLPAPSRKMMSLEEVEAAMRAQ--AKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQ 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 860 PPQPFGLPSQPSQGQGplgpspaaaHPHSTIQLPASQSAlqpqqppreqplppaplamphikPPPTTPIPQLPAPQAHKH 939
Cdd:pfam09770 245 QPQQQPQQPQQHPGQG---------HPVTILQRPQSPQP-----------------------DPAQPSIQPQAQQFHQQP 292
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720409718 940 PPHLSGPSPFSLNANLPPPPALKPLSslsthhppsahppplQLMPQSQPLPSSPAQPPGltQSQSLPPPAASHP 1013
Cdd:pfam09770 293 PPVPVQPTQILQNPNRLSAARVGYPQ---------------NPQPGVQPAPAHQAHRQQ--GSFGRQAPIITHP 349
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
691-803 |
9.20e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 44.00 E-value: 9.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 691 RSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPAlqAPSGAASAPSTAPPGTPQLPTQGPTPSA 770
Cdd:PRK14971 363 TQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPS--APQSATQPAGTPPTVSVDPPAAVPVNPP 440
|
90 100 110
....*....|....*....|....*....|....*..
gi 1720409718 771 TAVPPQGSPATSQPPNQ----TQSTVAPAAHTHIQQA 803
Cdd:PRK14971 441 STAPQAVRPAQFKEEKKipvsKVSSLGPSTLRPIQEK 477
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
739-1084 |
9.76e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 739 PALQAPSGAASaPStAPPGTPQlPTQGPTPSATAVPPQGSPATSQPPNQTQ-STVAPAAHTHIQQAPTLHPPRLPSPHPP 817
Cdd:PHA03247 2478 PVYRRPAEARF-PF-AAGAAPD-PGGGGPPDPDAPPAPSRLAPAILPDEPVgEPVHPRMLTWIRGLEELASDDAGDPPPP 2554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 818 LQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAH--------PHST 889
Cdd:PHA03247 2555 LPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHapdppppsPSPA 2634
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 890 IQLPASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGP-SPFSLNANLPPPPALKPLSSLS 968
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTvGSLTSLADPPPPPPTPEPAPHA 2714
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 969 THHPPSAHPPPLQLMPQSQPLPSSPAQP--------PGLTQSQSLPPPAASHPTTGLHQVPSQSPFPQHPfvpGGPPPIT 1040
Cdd:PHA03247 2715 LVSATPLPPGPAAARQASPALPAAPAPPavpagpatPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT---RPAVASL 2791
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1720409718 1041 PPSCPPTSTPPAGPSSSSQPPCSAAVSSGGSVPGAPSCPLPAVQ 1084
Cdd:PHA03247 2792 SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQ 2835
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
701-869 |
9.92e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 43.90 E-value: 9.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 701 PKDIDQDNRSTSPSIPSPQDNESDSDSSAQQqMLQAQPPALQAPSGAAS--APSTAPPGTPQLPTQGPTPsatAVPPQGS 778
Cdd:PHA03378 655 PQVEITPYKPTWTQIGHIPYQPSPTGANTML-PIQWAPGTMQPPPRAPTpmRPPAAPPGRAQRPAAATGR---ARPPAAA 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 779 PATSQPPNQTQSTVAP--AAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQ 856
Cdd:PHA03378 731 PGRARPPAAAPGRARPpaAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLM 810
|
170
....*....|...
gi 1720409718 857 HPGPPQPFGLPSQ 869
Cdd:PHA03378 811 PRAAPGQQGPTKQ 823
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
711-893 |
1.21e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.33 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 711 TSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQ----GSPATSQPPN 786
Cdd:PRK12323 400 AAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAaagpRPVAAAAAAA 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 787 QTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQT---GPLLQHPGPPQP 863
Cdd:PRK12323 480 PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPApaaAPAPRAAAATEP 559
|
170 180 190
....*....|....*....|....*....|
gi 1720409718 864 FGLPSQPSQGQGPLGPSPAAAHPHSTIQLP 893
Cdd:PRK12323 560 VVAPRPPRASASGLPDMFDGDWPALAARLP 589
|
|
| PRK11901 |
PRK11901 |
hypothetical protein; Reviewed |
698-897 |
1.25e-03 |
|
hypothetical protein; Reviewed
Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 42.75 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 698 SSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQ---LPTQGPTPSATAVP 774
Cdd:PRK11901 55 GSALKSPTEHESQQSSNNAGAEKNIDLSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQdisAPPISPTPTQAAPP 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 775 PQgsPATSQ----PPN------QTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSlhSQGPP 844
Cdd:PRK11901 135 QT--PNGQQrielPGNisdalsQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPAT--KKPAV 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1720409718 845 GPHSlqTGPLLQHPGPpqpfglPSQPSQGQGPLGPSPAAAHPHSTIQLP-ASQS 897
Cdd:PRK11901 211 NHHK--TATVAVPPAT------SGKPKSGAASARALSSAPASHYTLQLSsASRS 256
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
733-863 |
1.34e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.16 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 733 MLQAQPP-ALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAhthiqQAPTLHPPRL 811
Cdd:PRK14951 361 LLAFKPAaAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP-----VAAPAAAAPA 435
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1720409718 812 PSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLlqHPGPPQP 863
Cdd:PRK14951 436 AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPA--PAAAPAA 485
|
|
| BAH_BAHCC1 |
cd04714 |
BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. ... |
104-276 |
1.39e-03 |
|
BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Pssm-ID: 240065 Cd Length: 121 Bit Score: 40.08 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 104 VYRPGDCVYIESR-RPNTPYfICSIQdfklvhssqaccrspapafcdppacslpvapqppqHLSEAGRGpggskrdHLLM 182
Cdd:cd04714 3 IIRVGDCVLFKSPgRPSLPY-VARIE-----------------------------------SLWEDPEG-------NMVV 39
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 183 NVKWYYRqsevPDsvyqhlvqdrhnENDSGRElvitdPVIKNRELFISDYVDTYHAAALRGKCNISHFSD---IFAAREF 259
Cdd:cd04714 40 RVKWYYR----PE------------ETKGGRK-----PNHGEKELFASDHQDENSVQTIEHKCYVLTFAEyerLARVKKK 98
|
170
....*....|....*...
gi 1720409718 260 KARVDSFFYILG-YNPET 276
Cdd:cd04714 99 PQDGVDFYYCAGtYNPDT 116
|
|
| PRK13042 |
PRK13042 |
superantigen-like protein SSL4; Reviewed; |
710-787 |
1.42e-03 |
|
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 42.70 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 710 STSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGT----PQLPTQGPTPSATAVPPQGSPATSQPP 785
Cdd:PRK13042 17 TTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTkveaPQQTPNATTPSSTKVETPQSPTTKQVP 96
|
..
gi 1720409718 786 NQ 787
Cdd:PRK13042 97 TE 98
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
605-899 |
1.78e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 43.18 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 605 DIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREK-VASDTEDTDRITSKKTKTQEISRPNSPSEG 683
Cdd:PRK14949 482 NSAVPEQIDSTAEQSVVNPSVTDTQVDDTSASNNSAADNTVDDNYSAEDtLESNGLDEGDYAQDSAPLDAYQDDYVAFSS 561
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 684 EGESSDSRSVNDEGSSDPKdidQDNRSTSPSIPSPQDNE---SDSDSSAQQQMLQA----------QPPALQAPSGAASA 750
Cdd:PRK14949 562 ESYNALSDDEQHSANVQSA---QSAAEAQPSSQSLSPISavtTAAASLADDDILDAvlaardsllsDLDALSPKEGDGKK 638
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 751 PSTA--PPGTPQLPTQGPTPSATAVPP--QGSPATSQPPNQTQSTV--APAAHTHIQQAPTLHPPRLPSPHPplqPMTAP 824
Cdd:PRK14949 639 SSADrkPKTPPSRAPPASLSKPASSPDasQTSASFDLDPDFELATHqsVPEAALASGSAPAPPPVPDPYDRP---PWEEA 715
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720409718 825 PSQSSAQPHPQPSLHSQGPPGPHSLQTGPLlqHPGPPQPFGLPSQPSQGQGPlGPSPAAAHPHSTIQLPASQSAL 899
Cdd:PRK14949 716 PEVASANDGPNNAAEGNLSESVEDASNSEL--QAVEQQATHQPQVQAEAQSP-ASTTALTQTSSEVQDTELNLVL 787
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
761-898 |
1.97e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.05 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 761 LPTQGPTPSATAVPPQGSPAtSQPPNQTQSTVAPAAhthiqqaptlhpprlpsphpplqpMTAPPSQSSAQPHPQPSLHS 840
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAA-APAAAPAPAAAAPAA------------------------AAAPAPAAAPQPAPAPAPAP 439
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720409718 841 QGPPGPHSLQTGPLLQHP----GPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPASQSA 898
Cdd:PRK07764 440 APPSPAGNAPAGGAPSPPpaaaPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
736-825 |
2.09e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.49 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 736 AQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSAtavPPQGSPATsqPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPH 815
Cdd:PRK14950 366 PQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPK---EPVRETAT--PPPVPPRPVAPPVPHTPESAPKLTRAAIPVDE 440
|
90
....*....|
gi 1720409718 816 PPLQPMTAPP 825
Cdd:PRK14950 441 KPKYTPPAPP 450
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
745-860 |
2.67e-03 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 42.41 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 745 SGAASAPSTAPpgTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTlhpprlPSPHPPLQPMTAP 824
Cdd:PHA03269 17 LIIANLNTNIP--IPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPT------PAASEKFDPAPAP 88
|
90 100 110
....*....|....*....|....*....|....*...
gi 1720409718 825 PSQSSAQPHPQ--PSLHSQGPPGPHSLQTGPLLQHPGP 860
Cdd:PHA03269 89 HQAASRAPDPAvaPQLAAAPKPDAAEAFTSAAQAHEAP 126
|
|
| PRK08581 |
PRK08581 |
amidase domain-containing protein; |
593-855 |
3.76e-03 |
|
amidase domain-containing protein;
Pssm-ID: 236304 [Multi-domain] Cd Length: 619 Bit Score: 41.70 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 593 TSPDGRASPINEDIRSSGRNSPSAASTSsNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTEDTDRITS---KKT 669
Cdd:PRK08581 21 TSPTAYADDPQKDSTAKTTSHDSKKSND-DETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDfiyKNL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 670 KTQEISRPNSPSEGEGESSDSRSVNDEGSSDpKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPAL----QAPS 745
Cdd:PRK08581 100 PQTNINQLLTKNKYDDNYSLTTLIQNLFNLN-SDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKadnqKAPS 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 746 GAASAPST-------APPGTPQLPTQGPTPSATAVPPQGS--------------------PATSQPPNQTQSTVAPAAHT 798
Cdd:PRK08581 179 SNNTKPSTsnkqpnsPKPTQPNQSNSQPASDDTANQKSSSkdnqsmsdsaldsildqyseDAKKTQKDYASQSKKDKTET 258
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720409718 799 HIQQAPTLHPPRLPSPhpplqpmTAPPSQSSAQPHPQPSLHSQgppgpHSLQTGPLL 855
Cdd:PRK08581 259 SNTKNPQLPTQDELKH-------KSKPAQSFENDVNQSNTRST-----SLFETGPSL 303
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
737-825 |
4.44e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 41.80 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 737 QPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPqGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHP 816
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPP-AAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115
|
....*....
gi 1720409718 817 PLQPMTAPP 825
Cdd:PRK12270 116 EVTPLRGAA 124
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
594-837 |
4.84e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 41.48 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 594 SPDGRASPINEDIRSSGRNSPSAASTSSNDSKaeTVKKSAKKVKEEAASPLKSTKRQREKVASDTEDTDRITSKKTKTQE 673
Cdd:pfam17823 22 PADPRHFVLNKMWNGAGKQNASGDAVPRADNK--SSEQ*NFCAATAAPAPVTLTKGTSAAHLNSTEVTAEHTPHGTDLSE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 674 isrpNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSpqdnESDSDSSAQQqmlqAQPPALQAPSGAASAPST 753
Cdd:pfam17823 100 ----PATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPS----EAFSAPRAAA----CRANASAAPRAAIAAASA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 754 APPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPH 833
Cdd:pfam17823 168 PHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGT 247
|
....
gi 1720409718 834 PQPS 837
Cdd:pfam17823 248 VTPA 251
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
760-1031 |
4.96e-03 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 41.56 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 760 QLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPA-----AHTHIQQAPTLhpprlpsphpplQPM-----TAPPSQSS 829
Cdd:pfam09770 105 QQPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVrtgyeKYKEPEPIPDL------------QVDaslwgVAPKKAAA 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 830 AQPHPQPSLHSQGPPGPH----SLQ----------TGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPAS 895
Cdd:pfam09770 173 PAPAPQPAAQPASLPAPSrkmmSLEeveaamraqaKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQ 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 896 QsalqpqqppreqplppaplamphikpppttpipqlPAPQAHKHPPHLsgpspfslnanlppppalkplsslsthhppsa 975
Cdd:pfam09770 253 P-----------------------------------QQHPGQGHPVTI-------------------------------- 265
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 976 hpppLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGLH----QVPSQSPFPQHPF 1031
Cdd:pfam09770 266 ----LQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQnpnrLSAARVGYPQNPQ 321
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
768-888 |
5.14e-03 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 41.25 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 768 PSATAVPPQGSPATSQPPNQtqstvAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPH 847
Cdd:PHA03269 23 NTNIPIPELHTSAATQKPDP-----APAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPD 97
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1720409718 848 SLQTGPLLQHPGPPQPFGLPSQPSQGQGPL---------GPSPAAAHPHS 888
Cdd:PHA03269 98 PAVAPQLAAAPKPDAAEAFTSAAQAHEAPAdagtsaaskKPDPAAHTQHS 147
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
650-782 |
6.21e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 40.65 E-value: 6.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 650 QREKVASDTEDTDRITSKKTKTQ-EISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDN---------RSTSPSIPSPQ 719
Cdd:TIGR00601 9 QQQKFKIDMEPDETVKELKEKIEaEQGKDAYPVAQQKLIYSGKILSDDKTVKEYKIKEKDfvvvmvskpKTGTGKVAPPA 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720409718 720 DNESDSDSSAqqqmlqAQPPALQAPSGAASAPSTAPPGTP---QLPTQGPTPSATAVPPQGSPATS 782
Cdd:TIGR00601 89 ATPTSAPTPT------PSPPASPASGMSAAPASAVEEKSPseeSATATAPESPSTSVPSSGSDAAS 148
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
727-884 |
7.15e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.99 E-value: 7.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 727 SSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHThiqqaptl 806
Cdd:PRK07003 413 KAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA-------- 484
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720409718 807 hpprlpsphppLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAA 884
Cdd:PRK07003 485 -----------PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAA 551
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
718-829 |
7.41e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 40.91 E-value: 7.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 718 PQDNESDSDSSAQQQMLQaqpPALQAPSgAASAPSTAPPGTPQLPTQGPTPSatavPPQGSPATSQPPNQTQSTVAPAAH 797
Cdd:PRK14971 363 TQKGDDASGGRGPKQHIK---PVFTQPA-AAPQPSAAAAASPSPSQSSAAAQ----PSAPQSATQPAGTPPTVSVDPPAA 434
|
90 100 110
....*....|....*....|....*....|..
gi 1720409718 798 THIQQAPTLHPPRLPSPHPPLQPMtaPPSQSS 829
Cdd:PRK14971 435 VPVNPPSTAPQAVRPAQFKEEKKI--PVSKVS 464
|
|
| PRK10856 |
PRK10856 |
cytoskeleton protein RodZ; |
727-830 |
7.56e-03 |
|
cytoskeleton protein RodZ;
Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 40.39 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 727 SSAQ--QQMLQAQPPALQAPSGAASAPSTAPPGTPQlPTQGPTPSATAVP-PQGSPATSQPPNQTQSTVAPAAHThiQQA 803
Cdd:PRK10856 150 SSAElsQNSGQSVPLDTSTTTDPATTPAPAAPVDTT-PTNSQTPAVATAPaPAVDPQQNAVVAPSQANVDTAATP--APA 226
|
90 100
....*....|....*....|....*..
gi 1720409718 804 PTLHPPRLPSPHPPLQPMTAPPSQSSA 830
Cdd:PRK10856 227 APATPDGAAPLPTDQAGVSTPAADPNA 253
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
744-889 |
7.73e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 7.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 744 PSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSphpplqpmta 823
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQ---------- 430
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720409718 824 PPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHST 889
Cdd:PRK07994 431 RAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT 496
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
716-896 |
8.08e-03 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 40.76 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 716 PSPQDNESDSDSSAQQQML-QAQPPALQAPSGAAS-------APSTAPPGTPQLPTQGPTPSATAVPPQGSPA------- 780
Cdd:pfam09606 229 MNPQQMGGAPNQVAMQQQQpQQQGQQSQLGMGINQmqqmpqgVGGGAGQGGPGQPMGPPGQQPGAMPNVMSIGdqnnyqq 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 781 -TSQPPNQTQSTVAPAAHTH-----IQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSL--QTG 852
Cdd:pfam09606 309 qQTRQQQQQQGGNHPAAHQQqmnqsVGQGGQVVALGGLNHLETWNPGNFGGLGANPMQRGQPGMMSSPSPVPGQQvrQVT 388
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1720409718 853 PLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPASQ 896
Cdd:pfam09606 389 PNQFMRQSPQPSVPSPQGPGSQPPQSHPGGMIPSPALIPSPSPQ 432
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
536-708 |
8.67e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.80 E-value: 8.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 536 FKKYGELPPIEKPVDPPPFMFKPVKEEDDglSGKHSMRTRRSRGSMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPS 615
Cdd:PTZ00108 1223 SDQEDDEEQKTKPKKSSVKRLKSKKNNSS--KSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGS 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409718 616 AASTSSNDSKAETVKKSAKKVKEeaasPLKSTKRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEgESSDSRSVND 695
Cdd:PTZ00108 1301 KPSSPTKKKVKKRLEGSLAALKK----KKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSS-EDDDDSEVDD 1375
|
170
....*....|...
gi 1720409718 696 EGSSDPKDIDQDN 708
Cdd:PTZ00108 1376 SEDEDDEDDEDDD 1388
|
|
| |
