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Conserved domains on  [gi|1720408385|ref|XP_030109309|]
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nucleolar GTP-binding protein 2 isoform X3 [Mus musculus]

Protein Classification

NGP_1 and Oxidoreductase_nitrogenase domain-containing protein( domain architecture ID 10111506)

NGP_1 and Oxidoreductase_nitrogenase domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NGP_1 cd01858
A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases; ...
2-154 1.47e-122

A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases; Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.


:

Pssm-ID: 206751 [Multi-domain]  Cd Length: 157  Bit Score: 355.45  E-value: 1.47e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   2 VIDSSDVVVQVLDARDPMGTRSPHIEAYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKG 81
Cdd:cd01858     5 VIDSSDVIIQVLDARDPMGTRCKHVEKYLRKEKPHKHLIFVLNKCDLVPTWVTKRWVKVLSKEYPTLAFHASITNPFGKG 84
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720408385  82 AFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGV 154
Cdd:cd01858    85 ALINLLRQFAKLHSDKKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157
 
Name Accession Description Interval E-value
NGP_1 cd01858
A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases; ...
2-154 1.47e-122

A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases; Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.


Pssm-ID: 206751 [Multi-domain]  Cd Length: 157  Bit Score: 355.45  E-value: 1.47e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   2 VIDSSDVVVQVLDARDPMGTRSPHIEAYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKG 81
Cdd:cd01858     5 VIDSSDVIIQVLDARDPMGTRCKHVEKYLRKEKPHKHLIFVLNKCDLVPTWVTKRWVKVLSKEYPTLAFHASITNPFGKG 84
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720408385  82 AFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGV 154
Cdd:cd01858    85 ALINLLRQFAKLHSDKKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157
RbgA COG1161
Ribosome biogenesis GTPase RbgA [Translation, ribosomal structure and biogenesis];
7-245 3.28e-38

Ribosome biogenesis GTPase RbgA [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440775 [Multi-domain]  Cd Length: 279  Bit Score: 141.01  E-value: 3.28e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   7 DVVVQVLDARDPMGTRSPHIEAyLKKEKPwkhLIFVLNKCDLVPTWATKRWVAVL-SQDYPTLAFhaSLTNPFGKGAFIQ 85
Cdd:COG1161    25 DLVIEVVDARIPLSSRNPMLDE-LVGNKP---RLLVLNKADLADPSVTKQWLKYFeKQGVDALAI--SAKKGKGIKELIE 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385  86 LLRQ-FGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSEDSETD 164
Cdd:COG1161    99 AIRElAPEKGIKRRPIRVMIVGIPNVGKSTLINRLAGKKVAKTGNKPGVTKGQQWIKLDDGLELLDTPGILWPKFEDPEV 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385 165 ---IVLKG-----VVQVEKIkapQDHIGAVLERAKPEYISKTYKIESW-ENAEDFLEKLALRTGKLLKGGEPDMLTVSKM 235
Cdd:COG1161   179 gykLAATGaikdeVLDLEEV---ALFLLGYLARRYPELLKERYKLDELpRTKLELLEAIGRKRGCLLSGGEVDLEKAAEI 255
                         250
                  ....*....|
gi 1720408385 236 VLNDWQRGRI 245
Cdd:COG1161   256 LLTDFRSGKL 265
GTPase_YlqF TIGR03596
ribosome biogenesis GTP-binding protein YlqF; Members of this protein family are GTP-binding ...
7-245 5.33e-35

ribosome biogenesis GTP-binding protein YlqF; Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. [Protein synthesis, Other]


Pssm-ID: 274669 [Multi-domain]  Cd Length: 276  Bit Score: 132.25  E-value: 5.33e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   7 DVVVQVLDARDPMGTRSPHIEAYLKkEKPwkhLIFVLNKCDLVPTWATKRWVAVLSQDyPTLAFHASLTNPFGKGAFIQL 86
Cdd:TIGR03596  23 DVVIEVLDARIPLSSRNPMIDEIRG-NKP---RLIVLNKADLADPAVTKQWLKYFEEK-GIKALAVNAKKGAGVKKIIKA 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385  87 LRQFGKlHTDKKQISVGF---------IGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYP 157
Cdd:TIGR03596  98 AKKLLK-EKNEKLKAKGLknrpiramiVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDNLELLDTPGILWP 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385 158 SEDSETD---IVLKGVVQVEKIkaPQDHIGA----VLERAKPEYISKTYKIES-WENAEDFLEKLALRTGKLLKGGEPDM 229
Cdd:TIGR03596 177 KFEDQEVglkLAATGAIKDEAL--DLEDVALflleYLLEHYPELLKERYKLDElPEDPVELLEAIAKKRGCLLKGGELDL 254
                         250
                  ....*....|....*.
gi 1720408385 230 LTVSKMVLNDWQRGRI 245
Cdd:TIGR03596 255 DRAAEILLNDFRKGKL 270
MMR_HSR1 pfam01926
50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete ...
102-195 1.89e-15

50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide.


Pssm-ID: 460387 [Multi-domain]  Cd Length: 113  Bit Score: 72.27  E-value: 1.89e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385 102 VGFIGYPNVGKSSVINTLrSKKVCNVAPIAGETKVWQYITLM---RRIFLIDCPGVVYPSED-----------SETDIVL 167
Cdd:pfam01926   2 VALVGRPNVGKSTLINAL-TGAKAIVSDYPGTTRDPNEGRLElkgKQIILVDTPGLIEGASEgeglgraflaiIEADLIL 80
                          90       100
                  ....*....|....*....|....*....
gi 1720408385 168 KgVVQVEKIKAPQDH-IGAVLERAKPEYI 195
Cdd:pfam01926  81 F-VVDSEEGITPLDEeLLELLRENKKPII 108
PRK00093 PRK00093
GTP-binding protein Der; Reviewed
3-134 1.63e-07

GTP-binding protein Der; Reviewed


Pssm-ID: 234628 [Multi-domain]  Cd Length: 435  Bit Score: 53.52  E-value: 1.63e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   3 IDSSDVVVQVLDARDPMgtrSP---HIEAYLKKEKpwKHLIFVLNKCDlvptwatkrwvavlSQDYPTLA--FHA-SLTN 76
Cdd:PRK00093   78 IEEADVILFVVDGRAGL---TPadeEIAKILRKSN--KPVILVVNKVD--------------GPDEEADAyeFYSlGLGE 138
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385  77 PF------GKG------AFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGET 134
Cdd:PRK00093  139 PYpisaehGRGigdlldAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTT 208
 
Name Accession Description Interval E-value
NGP_1 cd01858
A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases; ...
2-154 1.47e-122

A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases; Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.


Pssm-ID: 206751 [Multi-domain]  Cd Length: 157  Bit Score: 355.45  E-value: 1.47e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   2 VIDSSDVVVQVLDARDPMGTRSPHIEAYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKG 81
Cdd:cd01858     5 VIDSSDVIIQVLDARDPMGTRCKHVEKYLRKEKPHKHLIFVLNKCDLVPTWVTKRWVKVLSKEYPTLAFHASITNPFGKG 84
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720408385  82 AFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGV 154
Cdd:cd01858    85 ALINLLRQFAKLHSDKKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157
YlqF_related_GTPase cd01849
Circularly permuted YlqF-related GTPases; These proteins are found in bacteria, eukaryotes, ...
7-154 9.70e-59

Circularly permuted YlqF-related GTPases; These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.


Pssm-ID: 206746 [Multi-domain]  Cd Length: 146  Bit Score: 191.06  E-value: 9.70e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   7 DVVVQVLDARDPMGTRSPHIEayLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQL 86
Cdd:cd01849     1 DVVVEVVDARDPLSSRNPDIE--VLINEKNKKLIMVLNKADLVPKEVLRKWVAELSELYGTKTFFISATNGQGILKLKAE 78
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720408385  87 LRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGV 154
Cdd:cd01849    79 ITKQKLKLKYKKGIRVGVVGLPNVGKSSFINALLNKFKLKVGSIPGTTKLQQDVKLDKEIYLYDTPGI 146
Nucleostemin_like cd04178
A circularly permuted subfamily of the Ras GTPases; Nucleostemin (NS) is a nucleolar protein ...
7-154 2.33e-50

A circularly permuted subfamily of the Ras GTPases; Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein.


Pssm-ID: 206753 [Multi-domain]  Cd Length: 171  Bit Score: 170.06  E-value: 2.33e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   7 DVVVQVLDARDPMGTRSPHIEAYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHAS------------- 73
Cdd:cd04178     1 DVILEVLDARDPLGCRCPQVERAVLVLGPNKKLVLVLNKIDLVPKENVEKWLKYLRNEFPTVAFKAStqqqkknlsrksk 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385  74 ----------LTNPFGKGAFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLM 143
Cdd:cd04178    81 kvkasddllsSSACLGADALLKLLKNYARNKGIKTSITVGVVGYPNVGKSSVINSLKRSRACNVGATPGVTKSMQEVHLD 160
                         170
                  ....*....|.
gi 1720408385 144 RRIFLIDCPGV 154
Cdd:cd04178   161 KHVKLLDSPGV 171
RbgA COG1161
Ribosome biogenesis GTPase RbgA [Translation, ribosomal structure and biogenesis];
7-245 3.28e-38

Ribosome biogenesis GTPase RbgA [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440775 [Multi-domain]  Cd Length: 279  Bit Score: 141.01  E-value: 3.28e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   7 DVVVQVLDARDPMGTRSPHIEAyLKKEKPwkhLIFVLNKCDLVPTWATKRWVAVL-SQDYPTLAFhaSLTNPFGKGAFIQ 85
Cdd:COG1161    25 DLVIEVVDARIPLSSRNPMLDE-LVGNKP---RLLVLNKADLADPSVTKQWLKYFeKQGVDALAI--SAKKGKGIKELIE 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385  86 LLRQ-FGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSEDSETD 164
Cdd:COG1161    99 AIRElAPEKGIKRRPIRVMIVGIPNVGKSTLINRLAGKKVAKTGNKPGVTKGQQWIKLDDGLELLDTPGILWPKFEDPEV 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385 165 ---IVLKG-----VVQVEKIkapQDHIGAVLERAKPEYISKTYKIESW-ENAEDFLEKLALRTGKLLKGGEPDMLTVSKM 235
Cdd:COG1161   179 gykLAATGaikdeVLDLEEV---ALFLLGYLARRYPELLKERYKLDELpRTKLELLEAIGRKRGCLLSGGEVDLEKAAEI 255
                         250
                  ....*....|
gi 1720408385 236 VLNDWQRGRI 245
Cdd:COG1161   256 LLTDFRSGKL 265
MJ1464 cd01859
An uncharacterized, circularly permuted subfamily of the Ras GTPases; This family represents ...
1-154 7.21e-38

An uncharacterized, circularly permuted subfamily of the Ras GTPases; This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.


Pssm-ID: 206752 [Multi-domain]  Cd Length: 157  Bit Score: 136.29  E-value: 7.21e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   1 MVIDSSDVVVQVLDARDPMGTRSPHIEAYLKKEKpwKHLIFVLNKCDLVPTWATKRWVAVL-SQDYPTLAFHAslTNPFG 79
Cdd:cd01859     7 RIIKEADVVLEVVDARDPELTRSRKLERMALELG--KKLIIVLNKADLVPREVLEKWKEVFeSEGLPVVYVSA--RERLG 82
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720408385  80 kgaFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPI---AGETKVWQYITLMRRIFLIDCPGV 154
Cdd:cd01859    83 ---TRILRRTIKELAIDGKPVIVGVVGYPKVGKSSIINALKGRHSASTSPIpgsPGYTKGIQLVRIDSKIYLIDTPGV 157
GTPase_YlqF TIGR03596
ribosome biogenesis GTP-binding protein YlqF; Members of this protein family are GTP-binding ...
7-245 5.33e-35

ribosome biogenesis GTP-binding protein YlqF; Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. [Protein synthesis, Other]


Pssm-ID: 274669 [Multi-domain]  Cd Length: 276  Bit Score: 132.25  E-value: 5.33e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   7 DVVVQVLDARDPMGTRSPHIEAYLKkEKPwkhLIFVLNKCDLVPTWATKRWVAVLSQDyPTLAFHASLTNPFGKGAFIQL 86
Cdd:TIGR03596  23 DVVIEVLDARIPLSSRNPMIDEIRG-NKP---RLIVLNKADLADPAVTKQWLKYFEEK-GIKALAVNAKKGAGVKKIIKA 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385  87 LRQFGKlHTDKKQISVGF---------IGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYP 157
Cdd:TIGR03596  98 AKKLLK-EKNEKLKAKGLknrpiramiVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDNLELLDTPGILWP 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385 158 SEDSETD---IVLKGVVQVEKIkaPQDHIGA----VLERAKPEYISKTYKIES-WENAEDFLEKLALRTGKLLKGGEPDM 229
Cdd:TIGR03596 177 KFEDQEVglkLAATGAIKDEAL--DLEDVALflleYLLEHYPELLKERYKLDElPEDPVELLEAIAKKRGCLLKGGELDL 254
                         250
                  ....*....|....*.
gi 1720408385 230 LTVSKMVLNDWQRGRI 245
Cdd:TIGR03596 255 DRAAEILLNDFRKGKL 270
HSR1_MMR1 cd01857
A circularly permuted subfamily of the Ras GTPases; Human HSR1 is localized to the human MHC ...
2-157 2.96e-34

A circularly permuted subfamily of the Ras GTPases; Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus.


Pssm-ID: 206750 [Multi-domain]  Cd Length: 140  Bit Score: 125.81  E-value: 2.96e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   2 VIDSSDVVVQVLDARDPMGTRSPHIEAYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLtnpfgkg 81
Cdd:cd01857     8 VIERSDVVVQIVDARNPLFFRCPDLEKYVKEVDPSKENVLLLNKADLVTEEQRKAWARYFKKEGIVVLFFSAL------- 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720408385  82 afiqllrqfgklhtdkKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYP 157
Cdd:cd01857    81 ----------------NEATIGLVGYPNVGKSSLINALVGSKKVSVSSTPGKTKHFQTIFLEPGITLCDCPGLVFP 140
YlqF cd01856
Circularly permuted YlqF GTPase; Proteins of the YlqF family contain all sequence motifs ...
7-154 1.71e-27

Circularly permuted YlqF GTPase; Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga).


Pssm-ID: 206749 [Multi-domain]  Cd Length: 171  Bit Score: 108.38  E-value: 1.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   7 DVVVQVLDARDPMGTRSPHIEAYLKKeKPwkHLIfVLNKCDLVPTWATKRWVAVL-SQDYPTLAFHASltNPFGKGAFIQ 85
Cdd:cd01856    21 DVVIEVRDARIPLSSRNPDLDKILGN-KP--RLI-VLNKADLADPAKTKKWLKYFkSQGEPVLFVNAK--NGKGVKKLLK 94
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720408385  86 LLRQFGKL-------HTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGV 154
Cdd:cd01856    95 KAKKLLKEneklkakGLLPRPLRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTRGQQWIRIGPNIELLDTPGI 170
MMR_HSR1 pfam01926
50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete ...
102-195 1.89e-15

50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide.


Pssm-ID: 460387 [Multi-domain]  Cd Length: 113  Bit Score: 72.27  E-value: 1.89e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385 102 VGFIGYPNVGKSSVINTLrSKKVCNVAPIAGETKVWQYITLM---RRIFLIDCPGVVYPSED-----------SETDIVL 167
Cdd:pfam01926   2 VALVGRPNVGKSTLINAL-TGAKAIVSDYPGTTRDPNEGRLElkgKQIILVDTPGLIEGASEgeglgraflaiIEADLIL 80
                          90       100
                  ....*....|....*....|....*....
gi 1720408385 168 KgVVQVEKIKAPQDH-IGAVLERAKPEYI 195
Cdd:pfam01926  81 F-VVDSEEGITPLDEeLLELLRENKKPII 108
YqeH cd01855
Circularly permuted YqeH GTPase; YqeH is an essential GTP-binding protein. Depletion of YqeH ...
1-154 9.20e-12

Circularly permuted YqeH GTPase; YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.


Pssm-ID: 206748 [Multi-domain]  Cd Length: 191  Bit Score: 63.82  E-value: 9.20e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   1 MVIDSSDVVVQVLDARDPMGTRSPHIEAYLKKEKpwkhLIFVLNKCDLVPT----WATKRWVAVLSQDYPTLAFHASLTN 76
Cdd:cd01855    29 TLLNDNALVVHVVDIFDFPGSLIPGLAELIGAKP----VILVGNKIDLLPKdvkpNRLKQWVKKRLKIGGLKIKDVILVS 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385  77 PFgKGAFI-QLLRQFGKLHTDKKQisVGFIGYPNVGKSSVINTLRSKKVCN-----------VAPIAGETKVWQYITLMR 144
Cdd:cd01855   105 AK-KGWGVeELIEEIKKLAKYRGD--VYVVGATNVGKSTLINALLKSNGGKvqaqalvqrltVSPIPGTTLGLIKIPLGE 181
                         170
                  ....*....|
gi 1720408385 145 RIFLIDCPGV 154
Cdd:cd01855   182 GKKLYDTPGI 191
PRK00093 PRK00093
GTP-binding protein Der; Reviewed
3-134 1.63e-07

GTP-binding protein Der; Reviewed


Pssm-ID: 234628 [Multi-domain]  Cd Length: 435  Bit Score: 53.52  E-value: 1.63e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   3 IDSSDVVVQVLDARDPMgtrSP---HIEAYLKKEKpwKHLIFVLNKCDlvptwatkrwvavlSQDYPTLA--FHA-SLTN 76
Cdd:PRK00093   78 IEEADVILFVVDGRAGL---TPadeEIAKILRKSN--KPVILVVNKVD--------------GPDEEADAyeFYSlGLGE 138
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385  77 PF------GKG------AFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGET 134
Cdd:PRK00093  139 PYpisaehGRGigdlldAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTT 208
Era_like cd00880
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family ...
103-162 1.83e-07

E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.


Pssm-ID: 206646 [Multi-domain]  Cd Length: 161  Bit Score: 50.71  E-value: 1.83e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720408385 103 GFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQY----ITLMRRIFLIDCPGVVYPSEDSE 162
Cdd:cd00880     1 AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRkeweLLPLGPVVLIDTPGLDEEGGLGR 64
Ras_like_GTPase cd00882
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like ...
103-170 3.14e-07

Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.


Pssm-ID: 206648 [Multi-domain]  Cd Length: 161  Bit Score: 50.15  E-value: 3.14e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720408385 103 GFIGYPNVGKSSVINTLRSKKVCNVAPIAGET-----KVWQYITLMRRIFLIDCPGVV---YPSEDSETDIVLKGV 170
Cdd:cd00882     1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTrdpdvYVKELDKGKVKLVLVDTPGLDefgGLGREELARLLLRGA 76
Der COG1160
Double Era-like domain GTPase Der [Translation, ribosomal structure and biogenesis];
3-134 2.16e-06

Double Era-like domain GTPase Der [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440774 [Multi-domain]  Cd Length: 438  Bit Score: 50.02  E-value: 2.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   3 IDSSDVVVQVLDARDPMgtrSP---HIEAYLKKEKpwKHLIFVLNKCDlvptwatkrwvavlSQDYPTLA--FHA-SLTN 76
Cdd:COG1160    80 IEEADVILFVVDGRAGL---TPldeEIAKLLRRSG--KPVILVVNKVD--------------GPKREADAaeFYSlGLGE 140
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720408385  77 PF------GKG------AFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTL----RSKkvcnVAPIAGET 134
Cdd:COG1160   141 PIpisaehGRGvgdlldAVLELLPEEEEEEEEDDPIKIAIVGRPNVGKSSLINALlgeeRVI----VSDIAGTT 210
YjeQ_EngC cd01854
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ...
40-119 1.46e-05

Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.


Pssm-ID: 206747 [Multi-domain]  Cd Length: 211  Bit Score: 46.24  E-value: 1.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385  40 IFVLNKCDLVPTWATKRWVAVLSQ-DYPTLAfhASLTNPFGKGAFIQLLrqfgklhtdKKQISVgFIGYPNVGKSSVINT 118
Cdd:cd01854    37 VIVLNKADLVDDEELEELLEIYEKlGYPVLA--VSAKTGEGLDELRELL---------KGKTSV-LVGQSGVGKSTLLNA 104

                  .
gi 1720408385 119 L 119
Cdd:cd01854   105 L 105
YihA_EngB cd01876
YihA (EngB) GTPase family; The YihA (EngB) subfamily of GTPases is typified by the E. coli ...
102-153 3.31e-05

YihA (EngB) GTPase family; The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.


Pssm-ID: 206665 [Multi-domain]  Cd Length: 170  Bit Score: 44.42  E-value: 3.31e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1720408385 102 VGFIGYPNVGKSSVINTL-RSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPG 153
Cdd:cd01876     2 VAFAGRSNVGKSSLINALtNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPG 54
NOG cd01897
Nucleolar GTP-binding protein (NOG); NOG1 is a nucleolar GTP-binding protein present in ...
106-154 9.78e-05

Nucleolar GTP-binding protein (NOG); NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.


Pssm-ID: 206684 [Multi-domain]  Cd Length: 167  Bit Score: 42.93  E-value: 9.78e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1720408385 106 GYPNVGKSSVINTLRSKKVcNVAPIAGETK---VWQYITLMRRIFLIDCPGV 154
Cdd:cd01897     7 GYPNVGKSSLVNKLTRAKP-EVAPYPFTTKslfVGHFDYKYLRWQVIDTPGI 57
EngA2 cd01895
EngA2 GTPase contains the second domain of EngA; This EngA2 subfamily CD represents the second ...
100-134 4.38e-04

EngA2 GTPase contains the second domain of EngA; This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.


Pssm-ID: 206682 [Multi-domain]  Cd Length: 174  Bit Score: 41.26  E-value: 4.38e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1720408385 100 ISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGET 134
Cdd:cd01895     3 IKIAIIGRPNVGKSSLLNALLGEERVIVSDIAGTT 37
Obg_like cd01881
Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1; ...
103-155 6.20e-04

Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1; The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified.


Pssm-ID: 206668 [Multi-domain]  Cd Length: 167  Bit Score: 40.46  E-value: 6.20e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1720408385 103 GFIGYPNVGKSSVINTLRSKKVcNVAPIAGETK-----VWQYITLmRRIFLIDCPGVV 155
Cdd:cd01881     1 GLVGLPNVGKSTLLSALTSAKV-EIASYPFTTLepnvgVFEFGDG-VDIQIIDLPGLL 56
feoB PRK09554
Fe(2+) transporter permease subunit FeoB;
98-153 1.02e-03

Fe(2+) transporter permease subunit FeoB;


Pssm-ID: 236563 [Multi-domain]  Cd Length: 772  Bit Score: 42.01  E-value: 1.02e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1720408385  98 KQISVGFIGYPNVGKSSVINTLRS--KKVCNVAPIAGETKVWQYITLMRRIFLIDCPG 153
Cdd:PRK09554    2 KKLTIGLIGNPNSGKTTLFNQLTGarQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
RsgA_GTPase pfam03193
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are ...
38-154 1.12e-03

RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are broadly conserved in bacteria and are indispensable for growth. The GTPase domain of RsgA is very similar to several P-loop GTPases, but differs in having a circular permutation of the GTPase structure described by a G4-G1-G3 pattern.


Pssm-ID: 427191 [Multi-domain]  Cd Length: 174  Bit Score: 39.83  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385  38 HLIFVLNKCDLVPTWAT-KRWVAVLSQ-DYPTlaFHASLTNPFGKGAFIQLLrqfgklhtdKKQISVgFIGYPNVGKSSV 115
Cdd:pfam03193  55 EPVIVLNKIDLLDEEEElEELLKIYRAiGYPV--LFVSAKTGEGIEALKELL---------KGKTTV-LAGQSGVGKSTL 122
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1720408385 116 INTLRSKKVCNVAPIAGETKVWQYITLMRRIF-------LIDCPGV 154
Cdd:pfam03193 123 LNALLPELDLRTGEISEKLGRGRHTTTHVELFplpggglLIDTPGF 168
PRK09518 PRK09518
bifunctional cytidylate kinase/GTPase Der; Reviewed
6-135 1.53e-03

bifunctional cytidylate kinase/GTPase Der; Reviewed


Pssm-ID: 236546 [Multi-domain]  Cd Length: 712  Bit Score: 41.32  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720408385   6 SDVVVQVLDARDPMGTRSPHIEAYLKKEKpwKHLIFVLNKCDLVPTW--ATKRWVAVLSQDYPTLAFHasltnpfGKGA- 82
Cdd:PRK09518  355 ADAVVFVVDGQVGLTSTDERIVRMLRRAG--KPVVLAVNKIDDQASEydAAEFWKLGLGEPYPISAMH-------GRGVg 425
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720408385  83 ---------FIQLLRQFGKLhTDKKQISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETK 135
Cdd:PRK09518  426 dlldealdsLKVAEKTSGFL-TPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTR 486
MnmE COG0486
tRNA U34 5-carboxymethylaminomethyl modifying GTPase MnmE/TrmE [Translation, ribosomal ...
3-50 2.37e-03

tRNA U34 5-carboxymethylaminomethyl modifying GTPase MnmE/TrmE [Translation, ribosomal structure and biogenesis]; tRNA U34 5-carboxymethylaminomethyl modifying GTPase MnmE/TrmE is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440253 [Multi-domain]  Cd Length: 448  Bit Score: 40.43  E-value: 2.37e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1720408385   3 IDSSDVVVQVLDARDPMGTRSPHIEAYLKKekpwKHLIFVLNKCDLVP 50
Cdd:COG0486   290 IEEADLVLLLLDASEPLTEEDEEILEKLKD----KPVIVVLNKIDLPS 333
EngA2 cd01895
EngA2 GTPase contains the second domain of EngA; This EngA2 subfamily CD represents the second ...
2-50 3.70e-03

EngA2 GTPase contains the second domain of EngA; This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.


Pssm-ID: 206682 [Multi-domain]  Cd Length: 174  Bit Score: 38.57  E-value: 3.70e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1720408385   2 VIDSSDVVVQVLDARDPMGTRSPHIEAYLKKEKpwKHLIFVLNKCDLVP 50
Cdd:cd01895    81 AIERADVVLLVLDASEGITEQDLRIAGLILEEG--KALIIVVNKWDLVE 127
MnmE_helical pfam12631
MnmE helical domain; The tRNA modification GTPase MnmE consists of three domains. An ...
3-50 3.83e-03

MnmE helical domain; The tRNA modification GTPase MnmE consists of three domains. An N-terminal domain, a helical domain and a GTPase domain which is nested within the helical domain. This family represents the helical domain.


Pssm-ID: 463649 [Multi-domain]  Cd Length: 326  Bit Score: 39.39  E-value: 3.83e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1720408385   3 IDSSDVVVQVLDARDPMgtrSPHIEAYLKKEKPWKHLIFVLNKCDLVP 50
Cdd:pfam12631 171 IEEADLVLLVLDASRPL---DEEDLEILELLKDKKPIIVVLNKSDLLG 215
GTPase_YsxC TIGR03598
ribosome biogenesis GTP-binding protein YsxC/EngB; Members of this protein family are a GTPase ...
102-119 4.25e-03

ribosome biogenesis GTP-binding protein YsxC/EngB; Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. [Protein synthesis, Other]


Pssm-ID: 274670 [Multi-domain]  Cd Length: 179  Bit Score: 38.22  E-value: 4.25e-03
                          10
                  ....*....|....*...
gi 1720408385 102 VGFIGYPNVGKSSVINTL 119
Cdd:TIGR03598  21 IAFAGRSNVGKSSLINAL 38
Obg cd01898
Obg GTPase; The Obg nucleotide binding protein subfamily has been implicated in stress ...
102-119 5.95e-03

Obg GTPase; The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.


Pssm-ID: 206685 [Multi-domain]  Cd Length: 170  Bit Score: 37.79  E-value: 5.95e-03
                          10
                  ....*....|....*...
gi 1720408385 102 VGFIGYPNVGKSSVINTL 119
Cdd:cd01898     3 VGLVGLPNAGKSTLLSAI 20
era TIGR00436
GTP-binding protein Era; Era is an essential GTPase in Escherichia coli and many other ...
102-153 9.74e-03

GTP-binding protein Era; Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. [Protein synthesis, Other]


Pssm-ID: 129528 [Multi-domain]  Cd Length: 270  Bit Score: 38.14  E-value: 9.74e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1720408385 102 VGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETK---VWQYITLMRRIFLIDCPG 153
Cdd:TIGR00436   3 VAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRnriSGIHTTGASQIIFIDTPG 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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