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Conserved domains on  [gi|1720404753|ref|XP_030108626|]
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polyamine-modulated factor 1 isoform X2 [Mus musculus]

Protein Classification

PMF1/NNF1 family protein( domain architecture ID 10512497)

PMF1/NNF1 family protein similar to Homo sapiens polyamine-modulated factor 1 (PMF1) and Saccharomyces cerevisiae kinetochore-associated protein NNF1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nnf1 pfam03980
Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is ...
 68-121 7.27e-16

Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is associated with the spindle poles and forms part of a kinetochore subcomplex called MIND.


:

Pssm-ID: 461118  Cd Length: 103  Bit Score: 69.20  E-value: 7.27e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1720404753  68 EVTQRIYDKFVAQLQTSIREEISEIKEEGNLEAVLNSLDKIIEEGRERGEPACN 121
Cdd:pfam03980   1 ESLESVHRQMVEFLQESCREEFEEILEERDVVAKLNELDELIEEAKERREEGEG 54
 
Name Accession Description Interval E-value
Nnf1 pfam03980
Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is ...
 68-121 7.27e-16

Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is associated with the spindle poles and forms part of a kinetochore subcomplex called MIND.


Pssm-ID: 461118  Cd Length: 103  Bit Score: 69.20  E-value: 7.27e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1720404753  68 EVTQRIYDKFVAQLQTSIREEISEIKEEGNLEAVLNSLDKIIEEGRERGEPACN 121
Cdd:pfam03980   1 ESLESVHRQMVEFLQESCREEFEEILEERDVVAKLNELDELIEEAKERREEGEG 54
 
Name Accession Description Interval E-value
Nnf1 pfam03980
Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is ...
 68-121 7.27e-16

Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is associated with the spindle poles and forms part of a kinetochore subcomplex called MIND.


Pssm-ID: 461118  Cd Length: 103  Bit Score: 69.20  E-value: 7.27e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1720404753  68 EVTQRIYDKFVAQLQTSIREEISEIKEEGNLEAVLNSLDKIIEEGRERGEPACN 121
Cdd:pfam03980   1 ESLESVHRQMVEFLQESCREEFEEILEERDVVAKLNELDELIEEAKERREEGEG 54
TetR_C_4 pfam08359
YsiA-like protein, C-terminal region; The members of this family are thought to be TetR-type ...
 60-117 1.87e-03

YsiA-like protein, C-terminal region; The members of this family are thought to be TetR-type transcriptional regulators that bear particular similarity to YsiA, a hypothetical protein expressed by B. subtilis.


Pssm-ID: 285548  Cd Length: 133  Bit Score: 36.58  E-value: 1.87e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720404753  60 KHFHQL--NPE---VTQ---RiydkfvaQLQTSIREEISEIkeegnLEAVLNSLDKIIEEGRERGE 117
Cdd:pfam08359  32 MHFSQLsaDPHlaiVTQlelR-------QSNLELRQKINEV-----LKGYLTLIDEIIAEGKESGE 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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