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Conserved domains on  [gi|1720383477|ref|XP_030104211|]
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kinesin-like protein KIFC2 isoform X3 [Mus musculus]

Protein Classification

kinesin family protein( domain architecture ID 10102659)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; similar to carboxy-terminal kinesins that contains a C-terminal domain responsible for the motor activity (it hydrolyzes ATP and binds microtubules)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
68-395 1.27e-167

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 474.39  E-value: 1.27e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  68 KGNIRVLCRLRPA----EGQPSSLVSVEPGQGGTITTCYRG-RQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVC 142
Cdd:cd01366     1 KGNIRVFCRVRPLlpseENEDTSHITFPDEDGQTIELTSIGaKQKEFSFDKVFDPEASQEDVFEEVSPLVQSALDGYNVC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 143 IFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGT----GGHHHVTLSMVEIYNEAVRDLLATG--PPERLVVRQGP 216
Cdd:cd01366    81 IFAYGQTGSGKTYTMEGPPESPGIIPRALQELFNTIKElkekGWSYTIKASMLEIYNETIRDLLAPGnaPQKKLEIRHDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 217 AgQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSER 296
Cdd:cd01366   161 E-KGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGKLNLVDLAGSER 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 297 VWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAED 376
Cdd:cd01366   240 LNKSGAT---------GDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAESN 310
                         330
                  ....*....|....*....
gi 1720383477 377 LGETICSLKFAERVGQVEL 395
Cdd:cd01366   311 LNETLNSLRFASKVNSCEL 329
 
Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
68-395 1.27e-167

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 474.39  E-value: 1.27e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  68 KGNIRVLCRLRPA----EGQPSSLVSVEPGQGGTITTCYRG-RQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVC 142
Cdd:cd01366     1 KGNIRVFCRVRPLlpseENEDTSHITFPDEDGQTIELTSIGaKQKEFSFDKVFDPEASQEDVFEEVSPLVQSALDGYNVC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 143 IFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGT----GGHHHVTLSMVEIYNEAVRDLLATG--PPERLVVRQGP 216
Cdd:cd01366    81 IFAYGQTGSGKTYTMEGPPESPGIIPRALQELFNTIKElkekGWSYTIKASMLEIYNETIRDLLAPGnaPQKKLEIRHDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 217 AgQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSER 296
Cdd:cd01366   161 E-KGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGKLNLVDLAGSER 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 297 VWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAED 376
Cdd:cd01366   240 LNKSGAT---------GDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAESN 310
                         330
                  ....*....|....*....
gi 1720383477 377 LGETICSLKFAERVGQVEL 395
Cdd:cd01366   311 LNETLNSLRFASKVNSCEL 329
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
70-396 7.85e-132

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 383.46  E-value: 7.85e-132
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477   70 NIRVLCRLRPAEGQPS-----SLVSVEPGQGGTITTCY---RGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYS 140
Cdd:smart00129   1 NIRVVVRVRPLNKREKsrkspSVVPFPDKVGKTLTVRSpknRQGEKKFTFDKVFDATASQEDVFEETaAPLVDSVLEGYN 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  141 VCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFR---EMGTGGHHHVTLSMVEIYNEAVRDLLATGPPERLVVRQgpa 217
Cdd:smart00129  81 ATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEkidKREEGWQFSVKVSYLEIYNEKIRDLLNPSSKKLEIRED--- 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  218 GQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRA--QGITGTLHLVDLAGSE 295
Cdd:smart00129 158 EKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSsgSGKASKLNLVDLAGSE 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  296 RVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRA--RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTR 373
Cdd:smart00129 238 RAKKTG---------AEGDRLKEAGNINKSLSALGNVINALAQhsKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPS 308
                          330       340
                   ....*....|....*....|...
gi 1720383477  374 AEDLGETICSLKFAERVGQVELG 396
Cdd:smart00129 309 SSNLEETLSTLRFASRAKEIKNK 331
Kinesin pfam00225
Kinesin motor domain;
76-393 2.39e-128

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 374.60  E-value: 2.39e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  76 RLRPA--------EGQPSSLVSVEPGQGGTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCIFTY 146
Cdd:pfam00225   1 RVRPLnerekergSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETaKPLVESVLEGYNVTIFAY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 147 GQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTGGHH---HVTLSMVEIYNEAVRDLLATGPPERLVVRQGPAGQGGIQ 223
Cdd:pfam00225  81 GQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERsefSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 224 VAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRA---ASPPRAQGITGTLHLVDLAGSERVWKA 300
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQrnrSTGGEESVKTGKLNLVDLAGSERASKT 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 301 GVAspvqrdpnGARRLREAQAINRSLLALGGVMAALRA-RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGE 379
Cdd:pfam00225 241 GAA--------GGQRLKEAANINKSLSALGNVISALADkKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEE 312
                         330
                  ....*....|....
gi 1720383477 380 TICSLKFAERVGQV 393
Cdd:pfam00225 313 TLSTLRFASRAKNI 326
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
48-389 2.28e-62

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 211.91  E-value: 2.28e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  48 QLSEGNQAPPTGCSGRLLELKGNIRVLCRLRPaEGQPSSLVSVEPGQGGTITTCYRGRqhrFRLDWVFPQDASQEEVFRQ 127
Cdd:COG5059     1 QSSDNNSPLKSRLSSRNEKSVSDIKSTIRIIP-GELGERLINTSKKSHVSLEKSKEGT---YAFDKVFGPSATQEDVYEE 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 128 LEPAVL-SCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREM---GTGGHHHVTLSMVEIYNEAVRDLLA 203
Cdd:COG5059    77 TIKPLIdSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLedlSMTKDFAVSISYLEIYNEKIYDLLS 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 204 TGPPERLVVRQgpaGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLraASPPRAQGI- 282
Cdd:COG5059   157 PNEESLNIRED---SLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIEL--ASKNKVSGTs 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 283 -TGTLHLVDLAGSERVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRP--HVPFRDSQLTRLLQPALC 359
Cdd:COG5059   232 eTSKLSLVDLAGSERAARTG---------NRGTRLKEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDSLG 302
                         330       340       350
                  ....*....|....*....|....*....|
gi 1720383477 360 AGTTAVLLLQISTRAEDLGETICSLKFAER 389
Cdd:COG5059   303 GNCNTRVICTISPSSNSFEETINTLKFASR 332
PLN03188 PLN03188
kinesin-12 family protein; Provisional
71-389 1.32e-45

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 170.12  E-value: 1.32e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477   71 IRVLCRLRPAEGQPSSLVSVEPGQGGTITTcyrgRQHRFRLDWVFPQDASQEEVFrQL--EPAVLSCLQGYSVCIFTYGQ 148
Cdd:PLN03188   100 VKVIVRMKPLNKGEEGEMIVQKMSNDSLTI----NGQTFTFDSIADPESTQEDIF-QLvgAPLVENCLAGFNSSVFAYGQ 174
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  149 TGTGKTYSMEGPP----------EDPGIAPRALQLLFREMGTGGHHHVT--------LSMVEIYNEAVRDLLatGPPER- 209
Cdd:PLN03188   175 TGSGKTYTMWGPAnglleehlsgDQQGLTPRVFERLFARINEEQIKHADrqlkyqcrCSFLEIYNEQITDLL--DPSQKn 252
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  210 LVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGI----TGT 285
Cdd:PLN03188   253 LQIREDV--KSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLssfkTSR 330
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  286 LHLVDLAGSERVWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAAL-----RARRPHVPFRDSQLTRLLQPALCA 360
Cdd:PLN03188   331 INLVDLAGSERQKLTGAA---------GDRLKEAGNINRSLSQLGNLINILaeisqTGKQRHIPYRDSRLTFLLQESLGG 401
                          330       340
                   ....*....|....*....|....*....
gi 1720383477  361 GTTAVLLLQISTRAEDLGETICSLKFAER 389
Cdd:PLN03188   402 NAKLAMVCAISPSQSCKSETFSTLRFAQR 430
 
Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
68-395 1.27e-167

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 474.39  E-value: 1.27e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  68 KGNIRVLCRLRPA----EGQPSSLVSVEPGQGGTITTCYRG-RQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVC 142
Cdd:cd01366     1 KGNIRVFCRVRPLlpseENEDTSHITFPDEDGQTIELTSIGaKQKEFSFDKVFDPEASQEDVFEEVSPLVQSALDGYNVC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 143 IFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGT----GGHHHVTLSMVEIYNEAVRDLLATG--PPERLVVRQGP 216
Cdd:cd01366    81 IFAYGQTGSGKTYTMEGPPESPGIIPRALQELFNTIKElkekGWSYTIKASMLEIYNETIRDLLAPGnaPQKKLEIRHDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 217 AgQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSER 296
Cdd:cd01366   161 E-KGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGKLNLVDLAGSER 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 297 VWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAED 376
Cdd:cd01366   240 LNKSGAT---------GDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAESN 310
                         330
                  ....*....|....*....
gi 1720383477 377 LGETICSLKFAERVGQVEL 395
Cdd:cd01366   311 LNETLNSLRFASKVNSCEL 329
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
70-396 7.85e-132

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 383.46  E-value: 7.85e-132
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477   70 NIRVLCRLRPAEGQPS-----SLVSVEPGQGGTITTCY---RGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYS 140
Cdd:smart00129   1 NIRVVVRVRPLNKREKsrkspSVVPFPDKVGKTLTVRSpknRQGEKKFTFDKVFDATASQEDVFEETaAPLVDSVLEGYN 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  141 VCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFR---EMGTGGHHHVTLSMVEIYNEAVRDLLATGPPERLVVRQgpa 217
Cdd:smart00129  81 ATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEkidKREEGWQFSVKVSYLEIYNEKIRDLLNPSSKKLEIRED--- 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  218 GQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRA--QGITGTLHLVDLAGSE 295
Cdd:smart00129 158 EKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSsgSGKASKLNLVDLAGSE 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  296 RVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRA--RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTR 373
Cdd:smart00129 238 RAKKTG---------AEGDRLKEAGNINKSLSALGNVINALAQhsKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPS 308
                          330       340
                   ....*....|....*....|...
gi 1720383477  374 AEDLGETICSLKFAERVGQVELG 396
Cdd:smart00129 309 SSNLEETLSTLRFASRAKEIKNK 331
Kinesin pfam00225
Kinesin motor domain;
76-393 2.39e-128

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 374.60  E-value: 2.39e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  76 RLRPA--------EGQPSSLVSVEPGQGGTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCIFTY 146
Cdd:pfam00225   1 RVRPLnerekergSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETaKPLVESVLEGYNVTIFAY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 147 GQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTGGHH---HVTLSMVEIYNEAVRDLLATGPPERLVVRQGPAGQGGIQ 223
Cdd:pfam00225  81 GQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERsefSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 224 VAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRA---ASPPRAQGITGTLHLVDLAGSERVWKA 300
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQrnrSTGGEESVKTGKLNLVDLAGSERASKT 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 301 GVAspvqrdpnGARRLREAQAINRSLLALGGVMAALRA-RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGE 379
Cdd:pfam00225 241 GAA--------GGQRLKEAANINKSLSALGNVISALADkKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEE 312
                         330
                  ....*....|....
gi 1720383477 380 TICSLKFAERVGQV 393
Cdd:pfam00225 313 TLSTLRFASRAKNI 326
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
70-390 2.20e-107

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 321.13  E-value: 2.20e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  70 NIRVLCRLRPAEGQ----PSSLVSVEPGQGGTITTCYRGRQ--HRFRLDWVFPQDASQEEVFRQLEPAVL-SCLQGYSVC 142
Cdd:cd00106     1 NVRVAVRVRPLNGRearsAKSVISVDGGKSVVLDPPKNRVAppKTFAFDAVFDSTSTQEEVYEGTAKPLVdSALEGYNGT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 143 IFTYGQTGTGKTYSMEG-PPEDPGIAPRALQLLFREMGTGGHH----HVTLSMVEIYNEAVRDLLATGPPERLVVRqgPA 217
Cdd:cd00106    81 IFAYGQTGSGKTYTMLGpDPEQRGIIPRALEDIFERIDKRKETkssfSVSASYLEIYNEKIYDLLSPVPKKPLSLR--ED 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 218 GQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAA--SPPRAQGITGTLHLVDLAGSE 295
Cdd:cd00106   159 PKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRnrEKSGESVTSSKLNLVDLAGSE 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 296 RVWKAGVASpvqrdpngaRRLREAQAINRSLLALGGVMAALRARR-PHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRA 374
Cdd:cd00106   239 RAKKTGAEG---------DRLKEGGNINKSLSALGKVISALADGQnKHIPYRDSKLTRLLQDSLGGNSKTIMIACISPSS 309
                         330
                  ....*....|....*.
gi 1720383477 375 EDLGETICSLKFAERV 390
Cdd:cd00106   310 ENFEETLSTLRFASRA 325
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
71-389 8.24e-78

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 245.70  E-value: 8.24e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  71 IRVLCRLRP------AEGqPSSLVSVEPGQGGTITtcyrGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCI 143
Cdd:cd01372     3 VRVAVRVRPllpkeiIEG-CRICVSFVPGEPQVTV----GTDKSFTFDYVFDPSTEQEEVYNTCvAPLVDGLFEGYNATV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 144 FTYGQTGTGKTYSM------EGPPEDPGIAPRALQLLFREMGTGGHHH---VTLSMVEIYNEAVRDLLATGPPER--LVV 212
Cdd:cd01372    78 LAYGQTGSGKTYTMgtaytaEEDEEQVGIIPRAIQHIFKKIEKKKDTFefqLKVSFLEIYNEEIRDLLDPETDKKptISI 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 213 RQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRA------ASPPRAQG----I 282
Cdd:cd01372   158 REDS--KGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQtkkngpIAPMSADDknstF 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 283 TGTLHLVDLAGSERVWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAAL---RARRPHVPFRDSQLTRLLQPALC 359
Cdd:cd01372   236 TSKFHFVDLAGSERLKRTGAT---------GDRLKEGISINSGLLALGNVISALgdeSKKGAHVPYRDSKLTRLLQDSLG 306
                         330       340       350
                  ....*....|....*....|....*....|
gi 1720383477 360 AGTTAVLLLQISTRAEDLGETICSLKFAER 389
Cdd:cd01372   307 GNSHTLMIACVSPADSNFEETLNTLKYANR 336
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
70-393 4.19e-76

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 241.21  E-value: 4.19e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  70 NIRVLCRLRPAEGQP-----SSLVSVEPGQGGTITTCYRGRQHR----FRLDWVFPQDASQEEVFRQ-LEPAVLSCLQGY 139
Cdd:cd01371     2 NVKVVVRCRPLNGKEkaagaLQIVDVDEKRGQVSVRNPKATANEppktFTFDAVFDPNSKQLDVYDEtARPLVDSVLEGY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 140 SVCIFTYGQTGTGKTYSMEG---PPEDPGIAPRALQLLFREMGTGGHHH---VTLSMVEIYNEAVRDLLATGPPERLVVR 213
Cdd:cd01371    82 NGTIFAYGQTGTGKTYTMEGkreDPELRGIIPNSFAHIFGHIARSQNNQqflVRVSYLEIYNEEIRDLLGKDQTKRLELK 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 214 QGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAAS--PPRAQGIT-GTLHLVD 290
Cdd:cd01371   162 ERP--DTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEkgEDGENHIRvGKLNLVD 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 291 LAGSERVWKAGVaspvqrdpnGARRLREAQAINRSLLALGGVMAAL-RARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQ 369
Cdd:cd01371   240 LAGSERQSKTGA---------TGERLKEATKINLSLSALGNVISALvDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCAN 310
                         330       340
                  ....*....|....*....|....
gi 1720383477 370 ISTRAEDLGETICSLKFAERVGQV 393
Cdd:cd01371   311 IGPADYNYDETLSTLRYANRAKNI 334
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
70-389 1.42e-74

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 237.61  E-value: 1.42e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  70 NIRVLCRLRP---AEGQPSSLVSVE-PGQGGTITTCYRG-----RQHRFRLDWVFPQDASQEEVFRQ-LEPAVLSCLQGY 139
Cdd:cd01364     3 NIQVVVRCRPfnlRERKASSHSVVEvDPVRKEVSVRTGGladksSTKTYTFDMVFGPEAKQIDVYRSvVCPILDEVLMGY 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 140 SVCIFTYGQTGTGKTYSMEGP-----------PEDPGIAPRALQLLFREM-GTGGHHHVTLSMVEIYNEAVRDLLAT--G 205
Cdd:cd01364    83 NCTIFAYGQTGTGKTYTMEGDrspneeytwelDPLAGIIPRTLHQLFEKLeDNGTEYSVKVSYLEIYNEELFDLLSPssD 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 206 PPERLVVRQGPAGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAasppRAQGI--- 282
Cdd:cd01364   163 VSERLRMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHI----KETTIdge 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 283 ----TGTLHLVDLAGSERVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPAL 358
Cdd:cd01364   239 elvkIGKLNLVDLAGSENIGRSG---------AVDKRAREAGNINQSLLTLGRVITALVERAPHVPYRESKLTRLLQDSL 309
                         330       340       350
                  ....*....|....*....|....*....|.
gi 1720383477 359 CAGTTAVLLLQISTRAEDLGETICSLKFAER 389
Cdd:cd01364   310 GGRTKTSIIATISPASVNLEETLSTLEYAHR 340
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
70-393 4.31e-72

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 230.29  E-value: 4.31e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  70 NIRVLCRLRP----AEGQPS-SLVSVEPGQggTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCI 143
Cdd:cd01369     3 NIKVVCRFRPlnelEVLQGSkSIVKFDPED--TVVIATSETGKTFSFDRVFDPNTTQEDVYNFAaKPIVDDVLNGYNGTI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 144 FTYGQTGTGKTYSMEGPPEDP---GIAPRALQLLF---REMGTGGHHHVTLSMVEIYNEAVRDLLAtgpPER--LVVRQg 215
Cdd:cd01369    81 FAYGQTSSGKTYTMEGKLGDPesmGIIPRIVQDIFetiYSMDENLEFHVKVSYFEIYMEKIRDLLD---VSKtnLSVHE- 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 216 pAGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSE 295
Cdd:cd01369   157 -DKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENVETEKKKSGKLYLVDLAGSE 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 296 RVWKAGVASPVqrdpngarrLREAQAINRSLLALGGVMAAL-RARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRA 374
Cdd:cd01369   236 KVSKTGAEGAV---------LDEAKKINKSLSALGNVINALtDGKKTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSS 306
                         330
                  ....*....|....*....
gi 1720383477 375 EDLGETICSLKFAERVGQV 393
Cdd:cd01369   307 YNESETLSTLRFGQRAKTI 325
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
103-389 2.89e-70

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 226.46  E-value: 2.89e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 103 RGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTG 181
Cdd:cd01370    57 RNKELKYVFDRVFDETSTQEEVYEETtKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQEPGLMVLTMKELFKRIESL 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 182 GH---HHVTLSMVEIYNEAVRDLLaTGPPERLVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQ 258
Cdd:cd01370   137 KDekeFEVSMSYLEIYNETIRDLL-NPSSGPLELREDA--QNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANA 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 259 HSSRSHALVTLTLRAAspPRAQGIT-----GTLHLVDLAGSERvwkagvASPVQrdpNGARRLREAQAINRSLLALGGVM 333
Cdd:cd01370   214 TSSRSHAVLQITVRQQ--DKTASINqqvrqGKLSLIDLAGSER------ASATN---NRGQRLKEGANINRSLLALGNCI 282
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720383477 334 AAL--RARRP-HVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGETICSLKFAER 389
Cdd:cd01370   283 NALadPGKKNkHIPYRDSKLTRLLKDSLGGNCRTVMIANISPSSSSYEETHNTLKYANR 341
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
70-389 5.49e-70

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 224.90  E-value: 5.49e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  70 NIRVLCRLRPAEGQ-------------PSSLVSVEPGQGgtittcyrgrqhRFRLDWVFPQDASQEEVFRQL-EPAVLSC 135
Cdd:cd01374     1 KITVTVRVRPLNSReigineqvaweidNDTIYLVEPPST------------SFTFDHVFGGDSTNREVYELIaKPVVKSA 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 136 LQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFR--EMGTGGHHHVTLSMVEIYNEAVRDLLAtGPPERLVVR 213
Cdd:cd01374    69 LEGYNGTIFAYGQTSSGKTFTMSGDEDEPGIIPLAIRDIFSkiQDTPDREFLLRVSYLEIYNEKINDLLS-PTSQNLKIR 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 214 QGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTL--RAASPPRAQGIT-GTLHLVD 290
Cdd:cd01374   148 DDV--EKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIesSERGELEEGTVRvSTLNLID 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 291 LAGSERVWKAGVAspvqrdpnGARRlREAQAINRSLLALGGVMAAL--RARRPHVPFRDSQLTRLLQPALCAGTTAVLLL 368
Cdd:cd01374   226 LAGSERAAQTGAA--------GVRR-KEGSHINKSLLTLGTVISKLseGKVGGHIPYRDSKLTRILQPSLGGNSRTAIIC 296
                         330       340
                  ....*....|....*....|.
gi 1720383477 369 QISTRAEDLGETICSLKFAER 389
Cdd:cd01374   297 TITPAESHVEETLNTLKFASR 317
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
69-393 5.09e-69

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 223.38  E-value: 5.09e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  69 GNIRVLCRLRP-------------AEGQPSSLVSVEPGQGGTITTCYRGRQHRFRLDWVF-------PQDASQEEVFRQL 128
Cdd:cd01365     1 ANVKVAVRVRPfnsrekernskciVQMSGKETTLKNPKQADKNNKATREVPKSFSFDYSYwshdsedPNYASQEQVYEDL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 129 EPAVLS-CLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMG----TGGHHHVTLSMVEIYNEAVRDLLA 203
Cdd:cd01365    81 GEELLQhAFEGYNVCLFAYGQTGSGKSYTMMGTQEQPGIIPRLCEDLFSRIAdttnQNMSYSVEVSYMEIYNEKVRDLLN 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 204 ---TGPPERLVVRQGPAgqGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQ 280
Cdd:cd01365   161 pkpKKNKGNLKVREHPV--LGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHDAET 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 281 GITGT----LHLVDLAGSERVWKAGVaspvqrdpNGArRLREAQAINRSLLALGGVMAAL--------RARRPHVPFRDS 348
Cdd:cd01365   239 NLTTEkvskISLVDLAGSERASSTGA--------TGD-RLKEGANINKSLTTLGKVISALadmssgksKKKSSFIPYRDS 309
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1720383477 349 QLTRLLQPALCAGTTAVLLLQISTRAEDLGETICSLKFAERVGQV 393
Cdd:cd01365   310 VLTWLLKENLGGNSKTAMIAAISPADINYEETLSTLRYADRAKKI 354
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
70-390 2.98e-64

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 210.83  E-value: 2.98e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  70 NIRVLCRLRPAEGqpsslVSVEPGQG-------GTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSV 141
Cdd:cd01373     2 AVKVFVRIRPPAE-----REGDGEYGqclkklsSDTLVLHSKPPKTFTFDHVADSNTNQESVFQSVgKPIVESCLSGYNG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 142 CIFTYGQTGTGKTYSMEGPPE--------DPGIAPRALQLLFREM-------GTGGHHHVTLSMVEIYNEAVRDLLatGP 206
Cdd:cd01373    77 TIFAYGQTGSGKTYTMWGPSEsdnesphgLRGVIPRIFEYLFSLIqrekekaGEGKSFLCKCSFLEIYNEQIYDLL--DP 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 207 PER-LVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRaaSPPRAQGITGT 285
Cdd:cd01373   155 ASRnLKLREDI--KKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIE--SWEKKACFVNI 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 286 ----LHLVDLAGSERvwkagvaspVQRDPNGARRLREAQAINRSLLALGGVMAAL----RARRPHVPFRDSQLTRLLQPA 357
Cdd:cd01373   231 rtsrLNLVDLAGSER---------QKDTHAEGVRLKEAGNINKSLSCLGHVINALvdvaHGKQRHVCYRDSKLTFLLRDS 301
                         330       340       350
                  ....*....|....*....|....*....|...
gi 1720383477 358 LCAGTTAVLLLQISTRAEDLGETICSLKFAERV 390
Cdd:cd01373   302 LGGNAKTAIIANVHPSSKCFGETLSTLRFAQRA 334
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
71-390 5.93e-63

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 207.05  E-value: 5.93e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  71 IRVLCRLRPAEGQPSSLVSVEP-GQGGTI---TTCYRG------RQHRFRLDWVFpQDASQEEVFRQL-EPAVLSCLQGY 139
Cdd:cd01375     2 VQAFVRVRPTDDFAHEMIKYGEdGKSISIhlkKDLRRGvvnnqqEDWSFKFDGVL-HNASQELVYETVaKDVVSSALAGY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 140 SVCIFTYGQTGTGKTYSMEGPPE---DPGIAPRALQLLFREMGTGGHHHVT--LSMVEIYNEAVRDLLATGP------PE 208
Cdd:cd01375    81 NGTIFAYGQTGAGKTFTMTGGTEnykHRGIIPRALQQVFRMIEERPTKAYTvhVSYLEIYNEQLYDLLSTLPyvgpsvTP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 209 RLVVRQGPAgqgGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVT--LTLRAASPPRAQGITGTL 286
Cdd:cd01375   161 MTILEDSPQ---NIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTihLEAHSRTLSSEKYITSKL 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 287 HLVDLAGSERVWKAGVaspvqrdpnGARRLREAQAINRSLLALGGVMAAL-RARRPHVPFRDSQLTRLLQPALCAGTTAV 365
Cdd:cd01375   238 NLVDLAGSERLSKTGV---------EGQVLKEATYINKSLSFLEQAIIALsDKDRTHVPFRQSKLTHVLRDSLGGNCNTV 308
                         330       340
                  ....*....|....*....|....*
gi 1720383477 366 LLLQISTRAEDLGETICSLKFAERV 390
Cdd:cd01375   309 MVANIYGEAAQLEETLSTLRFASRV 333
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
48-389 2.28e-62

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 211.91  E-value: 2.28e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  48 QLSEGNQAPPTGCSGRLLELKGNIRVLCRLRPaEGQPSSLVSVEPGQGGTITTCYRGRqhrFRLDWVFPQDASQEEVFRQ 127
Cdd:COG5059     1 QSSDNNSPLKSRLSSRNEKSVSDIKSTIRIIP-GELGERLINTSKKSHVSLEKSKEGT---YAFDKVFGPSATQEDVYEE 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 128 LEPAVL-SCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREM---GTGGHHHVTLSMVEIYNEAVRDLLA 203
Cdd:COG5059    77 TIKPLIdSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLedlSMTKDFAVSISYLEIYNEKIYDLLS 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 204 TGPPERLVVRQgpaGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLraASPPRAQGI- 282
Cdd:COG5059   157 PNEESLNIRED---SLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIEL--ASKNKVSGTs 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 283 -TGTLHLVDLAGSERVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRP--HVPFRDSQLTRLLQPALC 359
Cdd:COG5059   232 eTSKLSLVDLAGSERAARTG---------NRGTRLKEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDSLG 302
                         330       340       350
                  ....*....|....*....|....*....|
gi 1720383477 360 AGTTAVLLLQISTRAEDLGETICSLKFAER 389
Cdd:COG5059   303 GNCNTRVICTISPSSNSFEETINTLKFASR 332
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
71-388 2.99e-62

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 205.32  E-value: 2.99e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  71 IRVLCRLRP-------AEGQP------SSLVSVEPGQGGTITTCYRG---RQHRFRLDWVFPQDASQEEVFRQL-EPAVL 133
Cdd:cd01368     3 VKVYLRVRPlskdeleSEDEGcievinSTTVVLHPPKGSAANKSERNggqKETKFSFSKVFGPNTTQKEFFQGTaLPLVQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 134 SCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTgghHHVTLSMVEIYNEAVRDLL------ATGPP 207
Cdd:cd01368    83 DLLHGKNGLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG---YSVFVSYIEIYNEYIYDLLepspssPTKKR 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 208 ERLVVRQGpaGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLrAASPPRAQGI----- 282
Cdd:cd01368   160 QSLRLRED--HNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKL-VQAPGDSDGDvdqdk 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 283 ----TGTLHLVDLAGSERvwkagvaspVQRDPNGARRLREAQAINRSLLALGGVMAALR-----ARRPHVPFRDSQLTRL 353
Cdd:cd01368   237 dqitVSQLSLVDLAGSER---------TSRTQNTGERLKEAGNINTSLMTLGTCIEVLRenqlqGTNKMVPFRDSKLTHL 307
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1720383477 354 LQPALCAGTTAVLLLQISTRAEDLGETICSLKFAE 388
Cdd:cd01368   308 FQNYFDGEGKASMIVNVNPCASDYDETLHVMKFSA 342
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
70-389 5.37e-60

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 198.88  E-value: 5.37e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  70 NIRVLCRLRP-----AEGQPSSLVSVEPGQGGTITT-CYRGRQHRFRLDWVFPQDASQEEVF-RQLEPAVLSCLQGYSVC 142
Cdd:cd01376     1 NVRVAVRVRPfvdgtAGASDPSCVSGIDSCSVELADpRNHGETLKYQFDAFYGEESTQEDIYaREVQPIVPHLLEGQNAT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 143 IFTYGQTGTGKTYSMEGPPEDPGIAPRAL-QLLFREMGTGGHHHVTLSMVEIYNEAVRDLLaTGPPERLVVRQGPAGQgg 221
Cdd:cd01376    81 VFAYGSTGAGKTFTMLGSPEQPGLMPLTVmDLLQMTRKEAWALSFTMSYLEIYQEKILDLL-EPASKELVIREDKDGN-- 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 222 IQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHA--LVTLTLRAASPPRAQgITGTLHLVDLAGSERVWK 299
Cdd:cd01376   158 ILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAvlLIKVDQRERLAPFRQ-RTGKLNLIDLAGSEDNRR 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 300 AGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGE 379
Cdd:cd01376   237 TG---------NEGIRLKESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDSLGGGSRCIMVANIAPERTFYQD 307
                         330
                  ....*....|
gi 1720383477 380 TICSLKFAER 389
Cdd:cd01376   308 TLSTLNFAAR 317
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
70-391 1.77e-53

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 182.11  E-value: 1.77e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  70 NIRVLCRLRPA---EGQPSSLVSVEPGQGGTIT----------TCYrGRQHRFRLDWVFPQDASQEEVFRQ-LEPAVLSC 135
Cdd:cd01367     1 KIKVCVRKRPLnkkEVAKKEIDVVSVPSKLTLIvhepklkvdlTKY-IENHTFRFDYVFDESSSNETVYRStVKPLVPHI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 136 LQGYSVCIFTYGQTGTGKTYSMEG----PPEDPGIAPRALQLLFREMGTGGHH---HVTLSMVEIYNEAVRDLLATGPpe 208
Cdd:cd01367    80 FEGGKATCFAYGQTGSGKTYTMGGdfsgQEESKGIYALAARDVFRLLNKLPYKdnlGVTVSFFEIYGGKVFDLLNRKK-- 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 209 RLVVRQGPAGQggIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRaaspPRAQGIT-GTLH 287
Cdd:cd01367   158 RVRLREDGKGE--VQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILR----DRGTNKLhGKLS 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 288 LVDLAGSERvwkagvasPVQRDPNGARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTT-AVL 366
Cdd:cd01367   232 FVDLAGSER--------GADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSkTCM 303
                         330       340
                  ....*....|....*....|....*
gi 1720383477 367 LLQISTRAEDLGETICSLKFAERVG 391
Cdd:cd01367   304 IATISPGASSCEHTLNTLRYADRVK 328
PLN03188 PLN03188
kinesin-12 family protein; Provisional
71-389 1.32e-45

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 170.12  E-value: 1.32e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477   71 IRVLCRLRPAEGQPSSLVSVEPGQGGTITTcyrgRQHRFRLDWVFPQDASQEEVFrQL--EPAVLSCLQGYSVCIFTYGQ 148
Cdd:PLN03188   100 VKVIVRMKPLNKGEEGEMIVQKMSNDSLTI----NGQTFTFDSIADPESTQEDIF-QLvgAPLVENCLAGFNSSVFAYGQ 174
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  149 TGTGKTYSMEGPP----------EDPGIAPRALQLLFREMGTGGHHHVT--------LSMVEIYNEAVRDLLatGPPER- 209
Cdd:PLN03188   175 TGSGKTYTMWGPAnglleehlsgDQQGLTPRVFERLFARINEEQIKHADrqlkyqcrCSFLEIYNEQITDLL--DPSQKn 252
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  210 LVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGI----TGT 285
Cdd:PLN03188   253 LQIREDV--KSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLssfkTSR 330
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  286 LHLVDLAGSERVWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAAL-----RARRPHVPFRDSQLTRLLQPALCA 360
Cdd:PLN03188   331 INLVDLAGSERQKLTGAA---------GDRLKEAGNINRSLSQLGNLINILaeisqTGKQRHIPYRDSRLTFLLQESLGG 401
                          330       340
                   ....*....|....*....|....*....
gi 1720383477  361 GTTAVLLLQISTRAEDLGETICSLKFAER 389
Cdd:PLN03188   402 NAKLAMVCAISPSQSCKSETFSTLRFAQR 430
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
66-202 2.50e-30

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 114.62  E-value: 2.50e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  66 ELKGNIRVLCRLRPAEGqpsSLVSVEPGQGGTITTCYRGRQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVCIFT 145
Cdd:pfam16796  17 ELKGNIRVFARVRPELL---SEAQIDYPDETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQLVQSCLDGYNVCIFA 93
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 146 YGQTGTGktysmegppEDPGIAPRALQLLFREM---GTGGHHHVTLSMVEIYNEAVRDLL 202
Cdd:pfam16796  94 YGQTGSG---------SNDGMIPRAREQIFRFIsslKKGWKYTIELQFVEIYNESSQDLL 144
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
73-342 2.83e-21

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 90.48  E-value: 2.83e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477  73 VLCRLRPAEGQPSSLVSVepgqggtITTCYRGRQhrfrldwvfpQDASQEEVFRQLEPAVLSCLQGYSV-CIFTYGQTGT 151
Cdd:cd01363     1 VLVRVNPFKELPIYRDSK-------IIVFYRGFR----------RSESQPHVFAIADPAYQSMLDGYNNqSIFAYGESGA 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 152 GKTYSMEgppedpGIAPRALQLLF---REMGTGGHHHVTLSMVEIYNEavrdllatgpperlvvrqgpagqggiqvaglt 228
Cdd:cd01363    64 GKTETMK------GVIPYLASVAFngiNKGETEGWVYLTEITVTLEDQ-------------------------------- 105
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383477 229 hwdvpnletLHQMLSLGRSNRaTAATVMNQHSSRSHALVTLtlraasppraqgitgtlhLVDLAGSERvwkagvaspvqr 308
Cdd:cd01363   106 ---------ILQANPILEAFG-NAKTTRNENSSRFGKFIEI------------------LLDIAGFEI------------ 145
                         250       260       270
                  ....*....|....*....|....*....|....
gi 1720383477 309 dpngarrlreaqaINRSLLALGGVmaaLRARRPH 342
Cdd:cd01363   146 -------------INESLNTLMNV---LRATRPH 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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