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Conserved domains on  [gi|1720364388|ref|XP_030101473|]
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lethal(2) giant larvae protein homolog 1 isoform X2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LLGL super family cl07111
LLGL2; This domain is found in lethal giant larvae homolog 2 (LLGL2) proteins and ...
 1-69 1.02e-19

LLGL2; This domain is found in lethal giant larvae homolog 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn. It has been identified in eukaryotes and tends to be found together with WD repeats (pfam00400).


The actual alignment was detected with superfamily member pfam08366:

Pssm-ID: 462446  Cd Length: 103  Bit Score: 84.55  E-value: 1.02e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720364388   1 MPRASYGDRHCVSVLRAETLVTLDFTSRVIDFFTVHST-QPEDECDNPQALAVLLEEELVVLDLQTPGWP 69
Cdd:pfam08366  34 MPRASYGDRHCITVMHGKKHTVFDFTSKVIDFFTLCESpDPNAEFDDPYALVVLLEEELVVIDLTTPGWP 103
 
Name Accession Description Interval E-value
LLGL pfam08366
LLGL2; This domain is found in lethal giant larvae homolog 2 (LLGL2) proteins and ...
 1-69 1.02e-19

LLGL2; This domain is found in lethal giant larvae homolog 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn. It has been identified in eukaryotes and tends to be found together with WD repeats (pfam00400).


Pssm-ID: 462446  Cd Length: 103  Bit Score: 84.55  E-value: 1.02e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720364388   1 MPRASYGDRHCVSVLRAETLVTLDFTSRVIDFFTVHST-QPEDECDNPQALAVLLEEELVVLDLQTPGWP 69
Cdd:pfam08366  34 MPRASYGDRHCITVMHGKKHTVFDFTSKVIDFFTLCESpDPNAEFDDPYALVVLLEEELVVIDLTTPGWP 103
 
Name Accession Description Interval E-value
LLGL pfam08366
LLGL2; This domain is found in lethal giant larvae homolog 2 (LLGL2) proteins and ...
 1-69 1.02e-19

LLGL2; This domain is found in lethal giant larvae homolog 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn. It has been identified in eukaryotes and tends to be found together with WD repeats (pfam00400).


Pssm-ID: 462446  Cd Length: 103  Bit Score: 84.55  E-value: 1.02e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720364388   1 MPRASYGDRHCVSVLRAETLVTLDFTSRVIDFFTVHST-QPEDECDNPQALAVLLEEELVVLDLQTPGWP 69
Cdd:pfam08366  34 MPRASYGDRHCITVMHGKKHTVFDFTSKVIDFFTLCESpDPNAEFDDPYALVVLLEEELVVIDLTTPGWP 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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