NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1720428244|ref|XP_030099597|]
View 

pre-mRNA-splicing factor SYF1 isoform X2 [Mus musculus]

Protein Classification

lipopolysaccharide assembly protein LapB( domain architecture ID 11459274)

lipopolysaccharide assembly protein LapB is a tetratricopeptide repeat (TPR) protein that modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 154-479 7.05e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 7.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 154 WCSLADYYIRSGHFEKARDVYEEAIrtvmtvrdftQVFDSYAqfeesmiaakmETASELGReeeddvdLELRLARFEQLI 233
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEAL----------ELDPETV-----------EAHLALGN-------LYRRRGEYDRAI 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 234 SrrpLLLNsvLLRQNPHHVHEWHK--RVALHQGRPREIINTYTEAVQTvDPFKATgkphtLWVAFAKFYEDNGQLDDARV 311
Cdd:COG2956    63 R---IHQK--LLERDPDRAEALLElaQDYLKAGLLDRAEELLEKLLEL-DPDDAE-----ALRLLAEIYEQEGDWEKAIE 131

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 312 ILEKATKVNfkqvDDLASVWCQCGELELRHENYDEALKLLRKATALparraeyfdgsEPvqnrvyKSLKVWSMLADLEES 391
Cdd:COG2956   132 VLERLLKLG----PENAHAYCELAELYLEQGDYDEAIEALEKALKL-----------DP------DCARALLLLAELYLE 190

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 392 LGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFkwPNVSDIwsTYLTKFISRYGGrkLERA 471
Cdd:COG2956   191 QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD--PSDDLL--LALADLLERKEG--LEAA 264


                  ....*...
gi 1720428244 472 RDLFEQAL 479
Cdd:COG2956   265 LALLERQL 272
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 154-479 7.05e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 7.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 154 WCSLADYYIRSGHFEKARDVYEEAIrtvmtvrdftQVFDSYAqfeesmiaakmETASELGReeeddvdLELRLARFEQLI 233
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEAL----------ELDPETV-----------EAHLALGN-------LYRRRGEYDRAI 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 234 SrrpLLLNsvLLRQNPHHVHEWHK--RVALHQGRPREIINTYTEAVQTvDPFKATgkphtLWVAFAKFYEDNGQLDDARV 311
Cdd:COG2956    63 R---IHQK--LLERDPDRAEALLElaQDYLKAGLLDRAEELLEKLLEL-DPDDAE-----ALRLLAEIYEQEGDWEKAIE 131

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 312 ILEKATKVNfkqvDDLASVWCQCGELELRHENYDEALKLLRKATALparraeyfdgsEPvqnrvyKSLKVWSMLADLEES 391
Cdd:COG2956   132 VLERLLKLG----PENAHAYCELAELYLEQGDYDEAIEALEKALKL-----------DP------DCARALLLLAELYLE 190

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 392 LGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFkwPNVSDIwsTYLTKFISRYGGrkLERA 471
Cdd:COG2956   191 QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD--PSDDLL--LALADLLERKEG--LEAA 264


                  ....*...
gi 1720428244 472 RDLFEQAL 479
Cdd:COG2956   265 LALLERQL 272
TPR_12 pfam13424
Tetratricopeptide repeat;
291-357 2.75e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.37  E-value: 2.75e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428244 291 TLWVAFAKFYEDNGQLDDARVILEKA----TKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATAL 357
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKAleiaRRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 154-479 7.05e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 7.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 154 WCSLADYYIRSGHFEKARDVYEEAIrtvmtvrdftQVFDSYAqfeesmiaakmETASELGReeeddvdLELRLARFEQLI 233
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEAL----------ELDPETV-----------EAHLALGN-------LYRRRGEYDRAI 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 234 SrrpLLLNsvLLRQNPHHVHEWHK--RVALHQGRPREIINTYTEAVQTvDPFKATgkphtLWVAFAKFYEDNGQLDDARV 311
Cdd:COG2956    63 R---IHQK--LLERDPDRAEALLElaQDYLKAGLLDRAEELLEKLLEL-DPDDAE-----ALRLLAEIYEQEGDWEKAIE 131

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 312 ILEKATKVNfkqvDDLASVWCQCGELELRHENYDEALKLLRKATALparraeyfdgsEPvqnrvyKSLKVWSMLADLEES 391
Cdd:COG2956   132 VLERLLKLG----PENAHAYCELAELYLEQGDYDEAIEALEKALKL-----------DP------DCARALLLLAELYLE 190

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 392 LGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFkwPNVSDIwsTYLTKFISRYGGrkLERA 471
Cdd:COG2956   191 QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD--PSDDLL--LALADLLERKEG--LEAA 264


                  ....*...
gi 1720428244 472 RDLFEQAL 479
Cdd:COG2956   265 LALLERQL 272
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
293-538 7.73e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.02  E-value: 7.73e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 293 WVAFAKFYEDNGQLDDARVILEKATKVNfkqvDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEyfdgsepvq 372
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELD----PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE--------- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 373 nrvykslkVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFkwpnvSDIW 452
Cdd:COG0457    78 --------ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD-----PDDA 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 453 STYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIK 532
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224


                  ....*.
gi 1720428244 533 RAAEIY 538
Cdd:COG0457   225 LALALL 230
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 293-442 3.40e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 3.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 293 WVAFAKFYEDNGQLDDARVILEKATKVNfkqvDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYfdgsepvq 372
Cdd:COG4783     7 LYALAQALLLAGDYDEAEALLEKALELD----PDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA-------- 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 373 nrvykslkvWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISL 442
Cdd:COG4783    75 ---------RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 326-501 5.20e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.07  E-value: 5.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 326 DLASVWCQCGELELRHENYDEALKLLRKATALPARRAEyfdgsepvqnrvykslkVWSMLADLEESLGTFQSTKAVYDRI 405
Cdd:COG3914    76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAE-----------------ALFNLGNLLLALGRLEEALAALRRA 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 406 LDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFkwPNVSDIWSTyLTKFISRYGgrKLERARDLFEQALDGCPPK 485
Cdd:COG3914   139 LALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD--PDNAEALNN-LGNALQDLG--RLEEAIAAYRRALELDPDN 213

                         170
                  ....*....|....*..
gi 1720428244 486 -YAKTLYLLYAQLEEEW 501
Cdd:COG3914   214 aDAHSNLLFALRQACDW 230
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
326-552 1.51e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.01  E-value: 1.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 326 DLASVWCQCGELELRHENYDEALKLLRKATALPARRAEyfdgsepvqnrvykslkVWSMLADLEESLGTFQSTKAVYDRI 405
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE-----------------ALYNLGLAYLRLGRYEEALADYEQA 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 406 LDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFkwPNVSDIWSTYLtkfISRYGGRKLERARDLFEQALDGCpPK 485
Cdd:COG0457    69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD--PDDAEALYNLG---LALLELGRYDEAIEAYERALELD-PD 142

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428244 486 YAKTLYLLyAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIE 552
Cdd:COG0457   143 DADALYNL-GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 195-439 1.61e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.53  E-value: 1.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 195 AQFEESMIAAKMETASELGREEEDdvdLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRvalhQGRPREIINTYT 274
Cdd:COG3914    30 AELEAAALAAALGLALLLLAALAE---AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA----LGRYEEALALYR 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 275 EAVQtVDPfkatgKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNfkqvDDLASVWCQCGELELRHENYDEALKLLRKA 354
Cdd:COG3914   103 RALA-LNP-----DNAEALFNLGNLLLALGRLEEALAALRRALALN----PDFAEAYLNLGEALRRLGRLEEAIAALRRA 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 355 TALPARRAEyfdgsepvqnrvykslkVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFL------EEHKY 428
Cdd:COG3914   173 LELDPDNAE-----------------ALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALrqacdwEVYDR 235

                         250
                  ....*....|.
gi 1720428244 429 FEESFKAYERG 439
Cdd:COG3914   236 FEELLAALARG 246
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 327-584 9.92e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.72  E-value: 9.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 327 LASVWCQCGELELRHENYDEALKLLRKATALPA-------------RRAEYFDGSEpvqnRVYKSL--------KVWSML 385
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPetveahlalgnlyRRRGEYDRAI----RIHQKLlerdpdraEALLEL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 386 ADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFkwPNVSDIWSTYLTKFISRygg 465
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG--PENAHAYCELAELYLEQ--- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 466 RKLERARDLFEQALDGCpPKYAKTLYLLyAQLEEEWGLARHAMAVYDRAtravepAQQYDMFNIYIKRAAEIYgvtHTRG 545
Cdd:COG2956   158 GDYDEAIEALEKALKLD-PDCARALLLL-AELYLEQGDYEEAIAALERA------LEQDPDYLPALPRLAELY---EKLG 226

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1720428244 546 IYQKAIEVL----SDEHAREMCLRFADMECKLGEIDRARAIYS 584
Cdd:COG2956   227 DPEEALELLrkalELDPSDDLLLALADLLERKEGLEAALALLE 269
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 293-408 5.37e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.76  E-value: 5.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 293 WVAFAKFYEDNGQLDDARVILEKATKVNfkqvDDLASVWCQCGELELRHENYDEALKLLRKATALparraeyfdgsEPvq 372
Cdd:COG4235    20 WLLLGRAYLRLGRYDEALAAYEKALRLD----PDNADALLDLAEALLAAGDTEEAEELLERALAL-----------DP-- 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1720428244 373 nrvyKSLKVWSMLADLEESLGTFQSTKAVYDRILDL 408
Cdd:COG4235    83 ----DNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 244-357 1.00e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.18  E-value: 1.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 244 LLRQNPHHVHEWHKR--VALHQGRPREIINTYTEAVQtVDPfkatgKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNf 321
Cdd:COG4783    30 ALELDPDNPEAFALLgeILLQLGDLDEAIVLLHEALE-LDP-----DEPEARLNLGLALLKAGDYDEALALLEKALKLD- 102

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1720428244 322 kqvDDLASVWCQCGELELRHENYDEALKLLRKATAL 357
Cdd:COG4783   103 ---PEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
TPR_12 pfam13424
Tetratricopeptide repeat;
291-357 2.75e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.37  E-value: 2.75e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428244 291 TLWVAFAKFYEDNGQLDDARVILEKA----TKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATAL 357
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKAleiaRRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 203-361 3.09e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 3.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428244 203 AAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQtVDP 282
Cdd:COG5010     7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ-LDP 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428244 283 FKATgkphtLWVAFAKFYEDNGQLDDARVILEKATKVNfkqvDDLASVWCQCGELELRHENYDEALKLLRKATALPARR 361
Cdd:COG5010    86 NNPE-----LYYNLALLYSRSGDKDEAKEYYEKALALS----PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH