|
Name |
Accession |
Description |
Interval |
E-value |
| Rab5-bind |
pfam09311 |
Rabaptin-like protein; Members of this family are predominantly found in Rabaptin and allow ... |
131-386 |
9.87e-25 |
|
Rabaptin-like protein; Members of this family are predominantly found in Rabaptin and allow for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes.
Pssm-ID: 462752 [Multi-domain] Cd Length: 307 Bit Score: 103.12 E-value: 9.87e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 131 QWEQLQVEGRQLQKELESVSRERDELQEGLRRSNEDCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQLQMAELATSH 210
Cdd:pfam09311 24 QVKKLQEMLRQANDQLEKTMKDKKELEDKMNQLSEETSNQVSTLAKRNQKSETLLDELQQAFSQAKRNFQDQLAVLMDSR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 211 KCLSQEVKRLNEENQGLRAEQLPSSALQGSEqredqDEALPSSIQELHLLVQNTRQQARARQQAQEHEAERLRIEIVKLR 290
Cdd:pfam09311 104 EQVSDELVRLQKDNESLQGKHSLHVSLQQAE-----KFDMPDTVQELQELVLKYREELIEVRTAADHMEEKLKAEILFLK 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 291 EALDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQR---------------------------------K 337
Cdd:pfam09311 179 EQIQAEQCLKENLEETLQAEIENCKEEIASISSLKVELERIKAEKEqlengltekirqledlqttkgsletqlkketneK 258
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1720424126 338 AQLTDLLSEQRAKTLRLQAELETSEQVQRDFVRLSQALQVRLERIRQAE 386
Cdd:pfam09311 259 AAVEQLVFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQAD 307
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
131-398 |
1.23e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 1.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 131 QWEQLQVEGRQLQKELESVSRERDELQEglrrsnedcakQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQLQMAELATsh 210
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEA-----------ELAELEAELEELRLELEELELELEEAQAEEYELLAELAR-- 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 211 kcLSQEVKRLNEENQGL--RAEQLPSSALQGSEQREDQDEALPSSIQELHLLvQNTRQQARARQQAQEHEAERLRIEIVK 288
Cdd:COG1196 300 --LEQDIARLEERRRELeeRLEELEEELAELEEELEELEEELEELEEELEEA-EEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 289 LREALDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQLTDLLSEQRAKTLRlQAELETSEQVQRDF 368
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE-EALEEAAEEEAELE 455
|
250 260 270
....*....|....*....|....*....|
gi 1720424126 369 VRLSQALQVRLERIRQAETLQQVRSILDEA 398
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEE 485
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
129-404 |
1.62e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 129 DSQWEQLQVEGRQLQKELESVSRERDELQEGLRRSNEDcAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQLQMAELAT 208
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLE-LEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 209 SHKCLSQEVKRLNEENQGLrAEQLPSSALQGSEQREDQDEALPSSIQELHLLVQNTRQQARARQQAQEHEAERLRIEIVK 288
Cdd:COG1196 317 RLEELEEELAELEEELEEL-EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 289 LREALDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQLTDLLSEQRAKTLRLQAELETSEQVQRDF 368
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270
....*....|....*....|....*....|....*.
gi 1720424126 369 VRLSQALQVRLERIRQAETLQQVRSILDEAPLRDIR 404
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
131-398 |
2.20e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 2.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 131 QWEQLQVEGRQLQKELESVSRERDELQEGLRRSNEDCAkQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQLQMAELATSH 210
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 211 KCLSQEVKRLNEEnqglraeqlpssaLQGSEQREDQDEALPSSIQELHLLVQNTRQQARARQQAQEHEAERLRIEIVKLR 290
Cdd:TIGR02168 312 ANLERQLEELEAQ-------------LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 291 EALDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAqltdLLSEQRAKTLRLQAELETSEQVQRDFVR 370
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL----LKKLEEAELKELQAELEELEEELEELQE 454
|
250 260
....*....|....*....|....*...
gi 1720424126 371 LSQALQVRLERIRQAetLQQVRSILDEA 398
Cdd:TIGR02168 455 ELERLEEALEELREE--LEEAEQALDAA 480
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
133-398 |
5.31e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 5.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 133 EQLQVEGRQLQKELESVSRERDELQEGLRrsneDCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQLQMAELATSHKC 212
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELE----QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 213 LSQEVKRLNEENQGLRA-----EQLPSSALQGSEQREDQDEALPSSIQELHLLvQNTRQQARARQQAQEHEAERLRIEIV 287
Cdd:TIGR02168 763 IEELEERLEEAEEELAEaeaeiEELEAQIEQLKEELKALREALDELRAELTLL-NEEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 288 KLREALDEETAAKASLERQLRVQREETDVLEASLCSLriETERVQQEQRKAQLTDLLSEqraktlrLQAELETSEQVQRD 367
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEAL--LNERASLEEALALLRSELEE-------LSEELRELESKRSE 912
|
250 260 270
....*....|....*....|....*....|...
gi 1720424126 368 FVRLSQALQVRLERI--RQAETLQQVRSILDEA 398
Cdd:TIGR02168 913 LRRELEELREKLAQLelRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
129-379 |
1.05e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 129 DSQWEQLQVEGRQLQKELES-------VSRERDELQEGLRRSNEDcAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQL 201
Cdd:COG1196 266 EAELEELRLELEELELELEEaqaeeyeLLAELARLEQDIARLEER-RRELEERLEELEEELAELEEELEELEEELEELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 202 QMAELATSHKCLSQEVKRLNEENQGLRAEQLPSSALQgSEQREDQDEALPSSIQELHLLVQNTRQQARARQQAQEHEAER 281
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL-EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 282 LRIEIVKLREALDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQLTDLLSEQRAKTLRLQAELETS 361
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
250
....*....|....*...
gi 1720424126 362 EQVQRDFVRLSQALQVRL 379
Cdd:COG1196 504 EGFLEGVKAALLLAGLRG 521
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
130-394 |
1.12e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 130 SQWEQLQVEGRQLQKELESVSRERDELQEGL---RRSNEDCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQ---------- 196
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRQISALRKDLarlEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEeelaeaeaei 784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 197 ERVQLQMAELATSHKCLSQEVKRLNEENQGLRAEQLpsSALQGSEQREDQDEALPSSIQELhllvQNTRQQARARQQAQE 276
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAA--NLRERLESLERRIAATERRLEDL----EEQIEELSEDIESLA 858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 277 HEAERLRIEIVKLREALDEETAAKASLERQLRVQREETDVLEASLcsLRIETERVQQEQRKAQLTDLLSEQRAKTLRLQA 356
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL--RELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
250 260 270
....*....|....*....|....*....|....*...
gi 1720424126 357 ELETSEQVQRDFVRLSQALQVRLERIRQAETLQQVRSI 394
Cdd:TIGR02168 937 RIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL 974
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
140-404 |
3.37e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 3.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 140 RQLQKELESVSRERD------ELQEGLRRsnedcaKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQLQMAELATSHKCL 213
Cdd:COG1196 196 GELERQLEPLERQAEkaeryrELKEELKE------LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 214 SQEVKRLNEENQGLRAEQLPSSALQGSEQREDQD--------EALPSSIQELHL-LVQNTRQQARARQQAQEHEAERLRI 284
Cdd:COG1196 270 EELRLELEELELELEEAQAEEYELLAELARLEQDiarleerrRELEERLEELEEeLAELEEELEELEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 285 EIVKLREALDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQLTDLLSEQRAKTLRLQAELETSEQV 364
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1720424126 365 QRDFVRLSQALQVRLERIRQAETLQQVRSILDEAPLRDIR 404
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
133-392 |
3.40e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 133 EQLQVEGRQLQKELESVSRERDELQEGLRRSNE---DCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQLQMAELATS 209
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEErrrELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 210 HKCLSQEVKRLNEENQGLRAEQLPSSALQgSEQREDQDEALPSSIQELHLLVQNTRQQARARQQAQEHEAER-----LRI 284
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELA-EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEealaeLEE 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 285 EIVKLREALDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQLTDLLSEQRAKTLRLQAELETSEQV 364
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
250 260
....*....|....*....|....*...
gi 1720424126 365 QRDFVRLSQALQVRLERIRQAETLQQVR 392
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAA 543
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
140-393 |
1.48e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 140 RQLQKELESVSRERDELQEGLRRSnedcAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQLQMAELATSHKCLSQEVKR 219
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAAL----KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 220 LnEENQGLRAEQLPSSALQGSEQREdqdealpssiqeLHLLVQNTRQQARARQQAQEHEAERLRIEIVKLREALDEETAA 299
Cdd:COG4942 99 L-EAQKEELAELLRALYRLGRQPPL------------ALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 300 KASLERQLRvqreetdvleaslcslRIETERVQQEQRKAQLTDLLSEQRAKTLRLQAELETSEQVQRDFVRLSQALQVRL 379
Cdd:COG4942 166 RAELEAERA----------------ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
250
....*....|....
gi 1720424126 380 ERIRQAETLQQVRS 393
Cdd:COG4942 230 ARLEAEAAAAAERT 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
276-392 |
2.21e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 276 EHEAERLRIEIVKLREALDEETAAKASLERQLRVQREETDVLEASLCSL------RIETERVQQEQRKAQLTDLLSEQRA 349
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleQLEREIERLERELEERERRRARLEA 366
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1720424126 350 KTLRLQAELETSEQvqrDFVRLSQALQVRLERIRQAETLQQVR 392
Cdd:COG4913 367 LLAALGLPLPASAE---EFAALRAEAAALLEALEEELEALEEA 406
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
133-400 |
4.66e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 4.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 133 EQLQVEGRQLQKELESVSRERDELQEGLRRSNEDCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQLQMAELAtshkc 212
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE----- 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 213 lsQEVKRLNEENQGLRAEQLPSSALQGSEQREDQDEALPSSIQELHLLVQNTRQQARARQQAQEHEAERLRIEIVKLREA 292
Cdd:COG1196 387 --ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 293 LDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQLTDLLSEQRAKTLRLQAELETSEQVQRDFVRLS 372
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
250 260
....*....|....*....|....*...
gi 1720424126 373 QALQVRLERiRQAETLQQVRSILDEAPL 400
Cdd:COG1196 545 AAALQNIVV-EDDEVAAAAIEYLKAAKA 571
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
129-368 |
3.78e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 3.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 129 DSQWEQLQVEGRQLQKELESVSRERDELQEGLRRSN---EDCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQLQMAE 205
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALAneiSRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 206 LATSHKCLSQ-EVKRLNEENQGLRAEQLPSSALQGSEQREDQDEALPSSIQELHL---LVQNTRQQARARQQAQEHEAER 281
Cdd:TIGR02168 339 LAELEEKLEElKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELqiaSLNNEIERLEARLERLEDRRER 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 282 LRIEIVKLREALDEetAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQLtdLLSEQRAKTLRLQAELETS 361
Cdd:TIGR02168 419 LQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ--ALDAAERELAQLQARLDSL 494
|
....*..
gi 1720424126 362 EQVQRDF 368
Cdd:TIGR02168 495 ERLQENL 501
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
214-392 |
2.61e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 214 SQEVKRLNEE---NQGLRAEQLPSSALQGSEQREDQDEALPSSIQELHLLVQNTRQQARARQQAQEHEAERLRI--EIVK 288
Cdd:PTZ00121 1554 AEELKKAEEKkkaEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKaeEEKK 1633
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 289 LREALDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQltdllSEQRAKTLRLQAELETSEQVQRdf 368
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE-----EDEKKAAEALKKEAEEAKKAEE-- 1706
|
170 180
....*....|....*....|....*
gi 1720424126 369 VRLSQALQVR-LERIRQAETLQQVR 392
Cdd:PTZ00121 1707 LKKKEAEEKKkAEELKKAEEENKIK 1731
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
279-383 |
3.20e-03 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 39.72 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 279 AERLRIEIVKL-REALDEETAAKASLERQLRVQREetdvleaslcslRIETERVQQEQRkaqltdllseQRAKTLRLQAE 357
Cdd:PTZ00266 435 AERARIEKENAhRKALEMKILEKKRIERLEREERE------------RLERERMERIER----------ERLERERLERE 492
|
90 100
....*....|....*....|....*..
gi 1720424126 358 LETSEQVQRDFV-RLSQALQVRLERIR 383
Cdd:PTZ00266 493 RLERDRLERDRLdRLERERVDRLERDR 519
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
276-399 |
3.79e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.51 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 276 EHEAERLRIEIVKLREALDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQLT---DLLSEQRAKTL 352
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDassDDLAALEEQLE 695
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1720424126 353 RLQAELETSEQVQRDFVRLSQALQVRLERIRQAetLQQVRSILDEAP 399
Cdd:COG4913 696 ELEAELEELEEELDELKGEIGRLEKELEQAEEE--LDELQDRLEAAE 740
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
129-339 |
8.30e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 38.51 E-value: 8.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 129 DSQWEQLQVEGRQLQKELESVSRERDELQEGLrrsnEDCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQlqmaELAT 208
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEY----AELKEELEDLRAELEEVDKEFAETRDELKDYREKLE----KLKR 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720424126 209 SHKCLSQEVKRLNEENQglraeqlpssalQGSEQREDQDEALPSSIQELHLLvqntrqqararqqaqEHEAERLRIEIVK 288
Cdd:TIGR02169 400 EINELKRELDRLQEELQ------------RLSEELADLNAAIAGIEAKINEL---------------EEEKEDKALEIKK 452
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1720424126 289 LREALDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQ 339
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
|
| |
