|
Name |
Accession |
Description |
Interval |
E-value |
| RNB |
smart00955 |
This domain is the catalytic domain of ribonuclease II; |
383-654 |
1.68e-97 |
|
This domain is the catalytic domain of ribonuclease II;
:
Pssm-ID: 214935 [Multi-domain] Cd Length: 286 Bit Score: 304.58 E-value: 1.68e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 383 RRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCE 462
Cdd:smart00955 1 RVDLRDLPLFTIDPEDAKDIDDAVSVEKLDNGGYRLGVHIADVSHYVKPGSALDREARKRGTSVYLPDRVIPMLPEELSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 463 ELCSLNPMTDKLTFSVIWKLTPEG-------------KLKLAFTLDH-----------ETGLPQGCHIYEYRDSNKLVEE 518
Cdd:smart00955 81 GLCSLNPGEDRLALSVEMTLDADGgeildyefyrsviRSKARLTYEEvdailekivldEEGKIEDIVPRERNDAHSLVEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 519 FMLLANMAVAHKIFRTFPeQALLRRHPPPQTKMLSD-LVEFCDQMGLPM-DVSSAGALNKSLTKTFGDDKyslarKEVLT 596
Cdd:smart00955 161 FMILANEAVARFLAKNGI-PGLYRVHEGPDPEKLAElLKEFLALLGLLLlGGDGPKALAKLLEKIRDSPE-----ERLLE 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039728073 597 NMYSRPMQMALYFCSGmlqdqeqFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALG 654
Cdd:smart00955 235 LLLLRSMPHAEYSVDN-------SGHFGLALDAYTHFTSPIRRYPDLIVHRQLKAALR 285
|
|
| Dis3l2_C_term |
pfam17877 |
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ... |
700-789 |
3.74e-31 |
|
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
:
Pssm-ID: 465547 Cd Length: 87 Bit Score: 116.98 E-value: 3.74e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 700 GPLESEAMVMGVLNQAFDVLVLRFGVQKRIYCNALALRSYSFQKVGKkpeLTLVWEPDDLEEEPTQQVITIFSLVDVVLQ 779
Cdd:pfam17877 1 GPLETEAVVLGVLDSSFDVLIPEYGIEKRVYLDQLPLKKFEFDKTGV---LTLYWKKGVPSSAYVPEDERFSSLVVVVLK 77
|
90
....*....|
gi 1039728073 780 AEATALKYSA 789
Cdd:pfam17877 78 SDSDPLKLEA 87
|
|
| OB_Dis3 |
pfam17849 |
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 ... |
277-353 |
7.28e-31 |
|
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 protein. This domain along with CSD1 binds to RNA.
:
Pssm-ID: 436091 [Multi-domain] Cd Length: 77 Bit Score: 115.78 E-value: 7.28e-31
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039728073 277 YALFSPSDHRVPRIYVPLKDCPQDFMTRPKDFANTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYG 353
Cdd:pfam17849 1 YVLFVPRDKRIPRIRIPTKSAPEEFLENPEDLEGKLFVVKIDDWPENSRYPLGHIVKVLGEIGDIETETEAILLENG 77
|
|
| Rrp44_CSD1 super family |
cl28867 |
Rrp44-like cold shock domain; |
50-250 |
2.34e-10 |
|
Rrp44-like cold shock domain;
The actual alignment was detected with superfamily member pfam17216:
Pssm-ID: 375054 Cd Length: 148 Bit Score: 59.40 E-value: 2.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 50 FETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEDQWKPritlsl 129
Cdd:pfam17216 4 FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKA------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 130 PGVLGLQAVKPESNDKeieatyeadipeegcghhplqqsrkgwsgPDviIEAQfDDSDSEDRHGNTSGLVDGVKKLsist 209
Cdd:pfam17216 78 PSSIVLDSEHFDVNDN-----------------------------PD--IEAG-DDDDNNESSSNTTVISDKQRRL---- 121
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1039728073 210 pdrgkedsstpVMKDenTPIPQDTrglseKSLQKSAKVVYI 250
Cdd:pfam17216 122 -----------LAKD--AMIAQRS-----KKIQPTAKVVYI 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RNB |
smart00955 |
This domain is the catalytic domain of ribonuclease II; |
383-654 |
1.68e-97 |
|
This domain is the catalytic domain of ribonuclease II;
Pssm-ID: 214935 [Multi-domain] Cd Length: 286 Bit Score: 304.58 E-value: 1.68e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 383 RRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCE 462
Cdd:smart00955 1 RVDLRDLPLFTIDPEDAKDIDDAVSVEKLDNGGYRLGVHIADVSHYVKPGSALDREARKRGTSVYLPDRVIPMLPEELSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 463 ELCSLNPMTDKLTFSVIWKLTPEG-------------KLKLAFTLDH-----------ETGLPQGCHIYEYRDSNKLVEE 518
Cdd:smart00955 81 GLCSLNPGEDRLALSVEMTLDADGgeildyefyrsviRSKARLTYEEvdailekivldEEGKIEDIVPRERNDAHSLVEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 519 FMLLANMAVAHKIFRTFPeQALLRRHPPPQTKMLSD-LVEFCDQMGLPM-DVSSAGALNKSLTKTFGDDKyslarKEVLT 596
Cdd:smart00955 161 FMILANEAVARFLAKNGI-PGLYRVHEGPDPEKLAElLKEFLALLGLLLlGGDGPKALAKLLEKIRDSPE-----ERLLE 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039728073 597 NMYSRPMQMALYFCSGmlqdqeqFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALG 654
Cdd:smart00955 235 LLLLRSMPHAEYSVDN-------SGHFGLALDAYTHFTSPIRRYPDLIVHRQLKAALR 285
|
|
| VacB |
COG0557 |
Exoribonuclease R [Transcription]; |
228-679 |
6.34e-94 |
|
Exoribonuclease R [Transcription];
Pssm-ID: 440323 [Multi-domain] Cd Length: 711 Bit Score: 309.34 E-value: 6.34e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 228 PIPQDTRGLSEkslqksAKVVYILEKKHSRAaTGILKLLadknsdlfKKYALFSPSDHRVPR-IYVPLKDCPQdfmtrPK 306
Cdd:COG0557 113 VTKEDRRGRPE------GRVVEILERANTRV-VGRFEKE--------KGFGFVVPDDKRLLQdIFIPPDDLNG-----AK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 307 DfaNTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFsDFSSEVLECLpQSLPWTIPPDEVGKRRDL 386
Cdd:COG0557 173 D--GDLVVVEITRYPERRGPPEGRVVEVLGSPGDPGAEILIAIRKHGLPH-EFPEEVLAEA-EALPDEVPEADLKGRRDL 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 387 RKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCS 466
Cdd:COG0557 249 RDLPLVTIDGEDAKDFDDAVSAEKLDNGGWRLGVHIADVSHYVRPGSALDREARKRGTSVYLPDRVIPMLPERLSNGLCS 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 467 LNPMTDKLTFSVIWKLTPEGKLK-----------------------------------------------LA-------- 491
Cdd:COG0557 329 LNPGEDRLAMSCEMEIDAKGEVVsyefyrsvirsdarltyeevqaildgkdeelreeyadlvpmleelyeLAkilrkare 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 492 -------------FTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTfpEQALLRR-HPPPQTKMLSDLVE 557
Cdd:COG0557 409 krgaidfdlpetkIILD-EEGKPEDIVPRERNDAHKLIEEFMLLANEAVAEFLEKL--KLPFLYRvHEEPDPEKLEALRE 485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 558 FCDQMGLPM---DVSSAGALNKsLTKTFGDDKYSlarkEVLTNMYSRPMQMALYfcsgmlqDQEQFRHYALNVPLYTHFT 634
Cdd:COG0557 486 FLANLGLKLkggDEPTPKDLQK-LLEQVKGRPEE----ELLNTLLLRSMKQAVY-------SPENIGHFGLALEAYTHFT 553
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1039728073 635 SPIRRFADVIVHRLLAAALG---YSEQPDVEPDTLQKQADHCNDR-RMA 679
Cdd:COG0557 554 SPIRRYPDLLVHRALKAYLEgkrSPGLQEYLEEELEEIAEHCSETeRRA 602
|
|
| RNB |
pfam00773 |
RNB domain; This domain is the catalytic domain of ribonuclease II. |
383-653 |
2.74e-84 |
|
RNB domain; This domain is the catalytic domain of ribonuclease II.
Pssm-ID: 459934 [Multi-domain] Cd Length: 314 Bit Score: 271.08 E-value: 2.74e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 383 RRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCE 462
Cdd:pfam00773 1 RKDLRDLPFITIDPADAKDLDDAISVEKLPNGGYRLGVHIADVSHYVPPGSPLDREARKRGTSVYLPDRVIPMLPEKLSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 463 ELCSLNPMTDKLTFSVIWKLTPEGKLK----------------------------------------------------- 489
Cdd:pfam00773 81 DLCSLNPGEDRLALSVEITIDADGEVTsyeiypsvirskarltyeevddllegkdaekdkpdlaedlrllyelakilrak 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 490 -------------LAFTLDHETglPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIfRTFPEQALLRRHPPPQTKMLSDLV 556
Cdd:pfam00773 161 rlqrgaldldtpeNKLILDEEG--VIDILIQERTDAHSLIEEFMLLANEAVARHL-QELGIPALYRVHPEPDLEKLNSLI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 557 EFCDQMGLPMdvssagALNKSLTKTFGDdkyslarKEVLTNMYSRPMQMALYFcsgmlqdQEQFRHYALNVPLYTHFTSP 636
Cdd:pfam00773 238 KLLQLLPDDK------GLSKSLEKIKDD-------ERLLSILLLRTMPRAEYS-------PEPLGHFGLGLDIYTHFTSP 297
|
330
....*....|....*..
gi 1039728073 637 IRRFADVIVHRLLAAAL 653
Cdd:pfam00773 298 IRRYPDLIVHRQLKALL 314
|
|
| RNase_R |
TIGR02063 |
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. ... |
243-676 |
1.77e-78 |
|
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA]
Pssm-ID: 273947 [Multi-domain] Cd Length: 709 Bit Score: 267.60 E-value: 1.77e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 243 KSAKVVYILEKKHSRAATGILKLladknsdlfKKYALFSPSDHRVP-RIYVPLKDCpqdfmTRPKDfaNTLFICRIIDWK 321
Cdd:TIGR02063 123 FEARVIKILERANDQIVGTFYIE---------NGIGFVIPDDKRIYlDIFIPPEQI-----LGAEE--GDKVLVEITKYP 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 322 EDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFsDFSSEVLEcLPQSLPWTIPPDEVGKRRDLRKDCIFTIDPSTARD 401
Cdd:TIGR02063 187 DRNRPAIGKVVEILGHADDPGIDILIIIRKHGIPY-EFPEEVLD-EAAKIPEEVPEEEIKGRKDLRDLPFVTIDGEDAKD 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 402 LDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMTDKLTFSVIWK 481
Cdd:TIGR02063 265 FDDAVYVEKLKDGNYKLGVAIADVSHYVREGSALDKEALKRGTSVYLPDRVIPMLPERLSNGICSLNPNEDRLTLSCEME 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 482 LTPEGK------------------------------------------LKLAFTLDH----------------------- 496
Cdd:TIGR02063 345 IDKKGRvkkyefyeavinsharltynqvndiiegkdaldkkepplkemLKNLFELYKilrkkrkkrgaidfdskeakiil 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 497 -ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTfPEQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSA---- 571
Cdd:TIGR02063 425 dENGKPIDIVPRERGDAHKLIEEFMIAANETVAEHLEKA-KLPFIYRVHERPSEEKLQNLREFLKTLGITLKGGTSdkpq 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 572 -GALNKSLTKTFGDDKYSLARKEVLtnmysRPMQMALYfcsgmlqDQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLA 650
Cdd:TIGR02063 504 pKDFQKLLEKVKGRPEEELINTVLL-----RSMQQAKY-------SPENIGHFGLALEYYTHFTSPIRRYPDLIVHRLIK 571
|
490 500 510
....*....|....*....|....*....|..
gi 1039728073 651 AALG------YSEQPDVEPDTLQKQADHCNDR 676
Cdd:TIGR02063 572 KALFggenttTEKEREYLEAKLEEIAEHSSKT 603
|
|
| PRK11642 |
PRK11642 |
ribonuclease R; |
377-685 |
1.21e-33 |
|
ribonuclease R;
Pssm-ID: 236944 [Multi-domain] Cd Length: 813 Bit Score: 138.72 E-value: 1.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 377 PDEVGKRR-DLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPM 455
Cdd:PRK11642 253 PEEAKAGRvDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVVPM 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 456 LPRLLCEELCSLNPMTDKLTFSVIWKLTPEGKL--------------KLAFT-----LDHETGL-----PQGCHIYE--- 508
Cdd:PRK11642 333 LPEVLSNGLCSLNPQVDRLCMVCEMTISSKGRLtgykfyeavmsshaRLTYTkvwhiLQGDQDLreqyaPLVKHLEElhn 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 509 -YR--------------------------------------DSNKLVEEFMLLANMAVAhKIFRTFPEQALLRRHPPPQT 549
Cdd:PRK11642 413 lYKvldkareerggisfeseeakfifnaerrierieqtqrnDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPST 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 550 KMLSDLVEFCDQMGLpmdvsSAGALNKSLTKTFGDDKYSLARK---EVLTNMYSRPMQMALYfcsgmlqDQEQFRHYALN 626
Cdd:PRK11642 492 EAITSFRSVLAELGL-----ELPGGNKPEPRDYAELLESVADRpdaEMLQTMLLRSMKQAIY-------DPENRGHFGLA 559
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039728073 627 VPLYTHFTSPIRRFADVIVHR----LLAAALGYSE--------QPDVEpDTLQkQADHCNdrrMASKRVQE 685
Cdd:PRK11642 560 LQSYAHFTSPIRRYPDLSLHRaikyLLAKEQGHKGnttetggyHYSME-EMLQ-LGQHCS---MTERRADE 625
|
|
| Dis3l2_C_term |
pfam17877 |
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ... |
700-789 |
3.74e-31 |
|
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
Pssm-ID: 465547 Cd Length: 87 Bit Score: 116.98 E-value: 3.74e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 700 GPLESEAMVMGVLNQAFDVLVLRFGVQKRIYCNALALRSYSFQKVGKkpeLTLVWEPDDLEEEPTQQVITIFSLVDVVLQ 779
Cdd:pfam17877 1 GPLETEAVVLGVLDSSFDVLIPEYGIEKRVYLDQLPLKKFEFDKTGV---LTLYWKKGVPSSAYVPEDERFSSLVVVVLK 77
|
90
....*....|
gi 1039728073 780 AEATALKYSA 789
Cdd:pfam17877 78 SDSDPLKLEA 87
|
|
| OB_Dis3 |
pfam17849 |
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 ... |
277-353 |
7.28e-31 |
|
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 protein. This domain along with CSD1 binds to RNA.
Pssm-ID: 436091 [Multi-domain] Cd Length: 77 Bit Score: 115.78 E-value: 7.28e-31
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039728073 277 YALFSPSDHRVPRIYVPLKDCPQDFMTRPKDFANTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYG 353
Cdd:pfam17849 1 YVLFVPRDKRIPRIRIPTKSAPEEFLENPEDLEGKLFVVKIDDWPENSRYPLGHIVKVLGEIGDIETETEAILLENG 77
|
|
| Rrp44_CSD1 |
pfam17216 |
Rrp44-like cold shock domain; |
50-250 |
2.34e-10 |
|
Rrp44-like cold shock domain;
Pssm-ID: 375054 Cd Length: 148 Bit Score: 59.40 E-value: 2.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 50 FETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEDQWKPritlsl 129
Cdd:pfam17216 4 FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKA------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 130 PGVLGLQAVKPESNDKeieatyeadipeegcghhplqqsrkgwsgPDviIEAQfDDSDSEDRHGNTSGLVDGVKKLsist 209
Cdd:pfam17216 78 PSSIVLDSEHFDVNDN-----------------------------PD--IEAG-DDDDNNESSSNTTVISDKQRRL---- 121
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1039728073 210 pdrgkedsstpVMKDenTPIPQDTrglseKSLQKSAKVVYI 250
Cdd:pfam17216 122 -----------LAKD--AMIAQRS-----KKIQPTAKVVYI 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RNB |
smart00955 |
This domain is the catalytic domain of ribonuclease II; |
383-654 |
1.68e-97 |
|
This domain is the catalytic domain of ribonuclease II;
Pssm-ID: 214935 [Multi-domain] Cd Length: 286 Bit Score: 304.58 E-value: 1.68e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 383 RRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCE 462
Cdd:smart00955 1 RVDLRDLPLFTIDPEDAKDIDDAVSVEKLDNGGYRLGVHIADVSHYVKPGSALDREARKRGTSVYLPDRVIPMLPEELSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 463 ELCSLNPMTDKLTFSVIWKLTPEG-------------KLKLAFTLDH-----------ETGLPQGCHIYEYRDSNKLVEE 518
Cdd:smart00955 81 GLCSLNPGEDRLALSVEMTLDADGgeildyefyrsviRSKARLTYEEvdailekivldEEGKIEDIVPRERNDAHSLVEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 519 FMLLANMAVAHKIFRTFPeQALLRRHPPPQTKMLSD-LVEFCDQMGLPM-DVSSAGALNKSLTKTFGDDKyslarKEVLT 596
Cdd:smart00955 161 FMILANEAVARFLAKNGI-PGLYRVHEGPDPEKLAElLKEFLALLGLLLlGGDGPKALAKLLEKIRDSPE-----ERLLE 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039728073 597 NMYSRPMQMALYFCSGmlqdqeqFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALG 654
Cdd:smart00955 235 LLLLRSMPHAEYSVDN-------SGHFGLALDAYTHFTSPIRRYPDLIVHRQLKAALR 285
|
|
| VacB |
COG0557 |
Exoribonuclease R [Transcription]; |
228-679 |
6.34e-94 |
|
Exoribonuclease R [Transcription];
Pssm-ID: 440323 [Multi-domain] Cd Length: 711 Bit Score: 309.34 E-value: 6.34e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 228 PIPQDTRGLSEkslqksAKVVYILEKKHSRAaTGILKLLadknsdlfKKYALFSPSDHRVPR-IYVPLKDCPQdfmtrPK 306
Cdd:COG0557 113 VTKEDRRGRPE------GRVVEILERANTRV-VGRFEKE--------KGFGFVVPDDKRLLQdIFIPPDDLNG-----AK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 307 DfaNTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFsDFSSEVLECLpQSLPWTIPPDEVGKRRDL 386
Cdd:COG0557 173 D--GDLVVVEITRYPERRGPPEGRVVEVLGSPGDPGAEILIAIRKHGLPH-EFPEEVLAEA-EALPDEVPEADLKGRRDL 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 387 RKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCS 466
Cdd:COG0557 249 RDLPLVTIDGEDAKDFDDAVSAEKLDNGGWRLGVHIADVSHYVRPGSALDREARKRGTSVYLPDRVIPMLPERLSNGLCS 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 467 LNPMTDKLTFSVIWKLTPEGKLK-----------------------------------------------LA-------- 491
Cdd:COG0557 329 LNPGEDRLAMSCEMEIDAKGEVVsyefyrsvirsdarltyeevqaildgkdeelreeyadlvpmleelyeLAkilrkare 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 492 -------------FTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTfpEQALLRR-HPPPQTKMLSDLVE 557
Cdd:COG0557 409 krgaidfdlpetkIILD-EEGKPEDIVPRERNDAHKLIEEFMLLANEAVAEFLEKL--KLPFLYRvHEEPDPEKLEALRE 485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 558 FCDQMGLPM---DVSSAGALNKsLTKTFGDDKYSlarkEVLTNMYSRPMQMALYfcsgmlqDQEQFRHYALNVPLYTHFT 634
Cdd:COG0557 486 FLANLGLKLkggDEPTPKDLQK-LLEQVKGRPEE----ELLNTLLLRSMKQAVY-------SPENIGHFGLALEAYTHFT 553
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1039728073 635 SPIRRFADVIVHRLLAAALG---YSEQPDVEPDTLQKQADHCNDR-RMA 679
Cdd:COG0557 554 SPIRRYPDLLVHRALKAYLEgkrSPGLQEYLEEELEEIAEHCSETeRRA 602
|
|
| RNB |
pfam00773 |
RNB domain; This domain is the catalytic domain of ribonuclease II. |
383-653 |
2.74e-84 |
|
RNB domain; This domain is the catalytic domain of ribonuclease II.
Pssm-ID: 459934 [Multi-domain] Cd Length: 314 Bit Score: 271.08 E-value: 2.74e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 383 RRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCE 462
Cdd:pfam00773 1 RKDLRDLPFITIDPADAKDLDDAISVEKLPNGGYRLGVHIADVSHYVPPGSPLDREARKRGTSVYLPDRVIPMLPEKLSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 463 ELCSLNPMTDKLTFSVIWKLTPEGKLK----------------------------------------------------- 489
Cdd:pfam00773 81 DLCSLNPGEDRLALSVEITIDADGEVTsyeiypsvirskarltyeevddllegkdaekdkpdlaedlrllyelakilrak 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 490 -------------LAFTLDHETglPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIfRTFPEQALLRRHPPPQTKMLSDLV 556
Cdd:pfam00773 161 rlqrgaldldtpeNKLILDEEG--VIDILIQERTDAHSLIEEFMLLANEAVARHL-QELGIPALYRVHPEPDLEKLNSLI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 557 EFCDQMGLPMdvssagALNKSLTKTFGDdkyslarKEVLTNMYSRPMQMALYFcsgmlqdQEQFRHYALNVPLYTHFTSP 636
Cdd:pfam00773 238 KLLQLLPDDK------GLSKSLEKIKDD-------ERLLSILLLRTMPRAEYS-------PEPLGHFGLGLDIYTHFTSP 297
|
330
....*....|....*..
gi 1039728073 637 IRRFADVIVHRLLAAAL 653
Cdd:pfam00773 298 IRRYPDLIVHRQLKALL 314
|
|
| RNase_R |
TIGR02063 |
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. ... |
243-676 |
1.77e-78 |
|
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA]
Pssm-ID: 273947 [Multi-domain] Cd Length: 709 Bit Score: 267.60 E-value: 1.77e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 243 KSAKVVYILEKKHSRAATGILKLladknsdlfKKYALFSPSDHRVP-RIYVPLKDCpqdfmTRPKDfaNTLFICRIIDWK 321
Cdd:TIGR02063 123 FEARVIKILERANDQIVGTFYIE---------NGIGFVIPDDKRIYlDIFIPPEQI-----LGAEE--GDKVLVEITKYP 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 322 EDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFsDFSSEVLEcLPQSLPWTIPPDEVGKRRDLRKDCIFTIDPSTARD 401
Cdd:TIGR02063 187 DRNRPAIGKVVEILGHADDPGIDILIIIRKHGIPY-EFPEEVLD-EAAKIPEEVPEEEIKGRKDLRDLPFVTIDGEDAKD 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 402 LDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMTDKLTFSVIWK 481
Cdd:TIGR02063 265 FDDAVYVEKLKDGNYKLGVAIADVSHYVREGSALDKEALKRGTSVYLPDRVIPMLPERLSNGICSLNPNEDRLTLSCEME 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 482 LTPEGK------------------------------------------LKLAFTLDH----------------------- 496
Cdd:TIGR02063 345 IDKKGRvkkyefyeavinsharltynqvndiiegkdaldkkepplkemLKNLFELYKilrkkrkkrgaidfdskeakiil 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 497 -ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTfPEQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSA---- 571
Cdd:TIGR02063 425 dENGKPIDIVPRERGDAHKLIEEFMIAANETVAEHLEKA-KLPFIYRVHERPSEEKLQNLREFLKTLGITLKGGTSdkpq 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 572 -GALNKSLTKTFGDDKYSLARKEVLtnmysRPMQMALYfcsgmlqDQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLA 650
Cdd:TIGR02063 504 pKDFQKLLEKVKGRPEEELINTVLL-----RSMQQAKY-------SPENIGHFGLALEYYTHFTSPIRRYPDLIVHRLIK 571
|
490 500 510
....*....|....*....|....*....|..
gi 1039728073 651 AALG------YSEQPDVEPDTLQKQADHCNDR 676
Cdd:TIGR02063 572 KALFggenttTEKEREYLEAKLEEIAEHSSKT 603
|
|
| 3_prime_RNase |
TIGR00358 |
VacB and RNase II family 3'-5' exoribonucleases; This model is defined to identify a pair of ... |
227-677 |
2.89e-54 |
|
VacB and RNase II family 3'-5' exoribonucleases; This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases. [Transcription, Degradation of RNA]
Pssm-ID: 273033 [Multi-domain] Cd Length: 654 Bit Score: 199.17 E-value: 2.89e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 227 TPIPQDTRGlsekslQKSAKVVYILEKKHSRAATGILklladknsdlFKKYALFSPSDHrvPRIYVPLKdCPQDfmTRPK 306
Cdd:TIGR00358 60 CPLSQPQRG------RFEAEVERILEPALTRFVGKFL----------GENDFGFVVPDD--PRIYLDII-VPKA--SVKN 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 307 DFA-NTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFSDfsSEVLECLPQSLPWTIPPDEVGKRRD 385
Cdd:TIGR00358 119 ELAeGDKVVVELTEYPLRRNLFYGEITQILGNNDDPLIPWWVTLARHEIPFEF--PDGVEQQAAKLQFDVDEQAKKYRED 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 386 LRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELC 465
Cdd:TIGR00358 197 LTDLAFVTIDGADAKDLDDAVYVKKLPDGGWKLYVAIADVSYYVAENSPLDKEAKHRGFSVYLPGFVIPMLPEELSNGLC 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 466 SLNPMTD------------------------------KLTFSVIWK-------LTPEG-----KLKLAFTL--------- 494
Cdd:TIGR00358 277 SLNPNEDrlvlvcemtisaqgritdnefypatieskaRLTYDKVNDwlenddeLQPEYetlveQLKALHQLsqalgewrh 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 495 -------DH--------ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAhKIFRTFPEQALLRRHPPPQTKMLSDLVEFC 559
Cdd:TIGR00358 357 krglidfEHpetkfivdEEGRVIDIVAEVRRIAEKIIEEAMIVANICAA-RFLHNHKVPGIYRVHPGPSKKKLQSLLEFL 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 560 DQMGLPMDVSSAGALNKSltktfgdDKYSLARK-------EVLTNMYSRPMQMALYfcsgmlqDQEQFRHYALNVPLYTH 632
Cdd:TIGR00358 436 AELGLTLPGGNAENVTTL-------DGACWLREvkdrpeyEILVTRLLRSLSQAEY-------SPEPLGHFGLGLEHYAH 501
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1039728073 633 FTSPIRRFADVIVHRLLAAALgYSEQPDVEPDTLQ----KQADHCNDRR 677
Cdd:TIGR00358 502 FTSPIRRYPDLTNHRLIKAVL-AKEQTDTERYQPQdellQIAEHCSDTE 549
|
|
| PRK11642 |
PRK11642 |
ribonuclease R; |
377-685 |
1.21e-33 |
|
ribonuclease R;
Pssm-ID: 236944 [Multi-domain] Cd Length: 813 Bit Score: 138.72 E-value: 1.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 377 PDEVGKRR-DLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPM 455
Cdd:PRK11642 253 PEEAKAGRvDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVVPM 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 456 LPRLLCEELCSLNPMTDKLTFSVIWKLTPEGKL--------------KLAFT-----LDHETGL-----PQGCHIYE--- 508
Cdd:PRK11642 333 LPEVLSNGLCSLNPQVDRLCMVCEMTISSKGRLtgykfyeavmsshaRLTYTkvwhiLQGDQDLreqyaPLVKHLEElhn 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 509 -YR--------------------------------------DSNKLVEEFMLLANMAVAhKIFRTFPEQALLRRHPPPQT 549
Cdd:PRK11642 413 lYKvldkareerggisfeseeakfifnaerrierieqtqrnDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPST 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 550 KMLSDLVEFCDQMGLpmdvsSAGALNKSLTKTFGDDKYSLARK---EVLTNMYSRPMQMALYfcsgmlqDQEQFRHYALN 626
Cdd:PRK11642 492 EAITSFRSVLAELGL-----ELPGGNKPEPRDYAELLESVADRpdaEMLQTMLLRSMKQAIY-------DPENRGHFGLA 559
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039728073 627 VPLYTHFTSPIRRFADVIVHR----LLAAALGYSE--------QPDVEpDTLQkQADHCNdrrMASKRVQE 685
Cdd:PRK11642 560 LQSYAHFTSPIRRYPDLSLHRaikyLLAKEQGHKGnttetggyHYSME-EMLQ-LGQHCS---MTERRADE 625
|
|
| Dis3l2_C_term |
pfam17877 |
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ... |
700-789 |
3.74e-31 |
|
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
Pssm-ID: 465547 Cd Length: 87 Bit Score: 116.98 E-value: 3.74e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 700 GPLESEAMVMGVLNQAFDVLVLRFGVQKRIYCNALALRSYSFQKVGKkpeLTLVWEPDDLEEEPTQQVITIFSLVDVVLQ 779
Cdd:pfam17877 1 GPLETEAVVLGVLDSSFDVLIPEYGIEKRVYLDQLPLKKFEFDKTGV---LTLYWKKGVPSSAYVPEDERFSSLVVVVLK 77
|
90
....*....|
gi 1039728073 780 AEATALKYSA 789
Cdd:pfam17877 78 SDSDPLKLEA 87
|
|
| OB_Dis3 |
pfam17849 |
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 ... |
277-353 |
7.28e-31 |
|
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 protein. This domain along with CSD1 binds to RNA.
Pssm-ID: 436091 [Multi-domain] Cd Length: 77 Bit Score: 115.78 E-value: 7.28e-31
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039728073 277 YALFSPSDHRVPRIYVPLKDCPQDFMTRPKDFANTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYG 353
Cdd:pfam17849 1 YVLFVPRDKRIPRIRIPTKSAPEEFLENPEDLEGKLFVVKIDDWPENSRYPLGHIVKVLGEIGDIETETEAILLENG 77
|
|
| Rnb |
COG4776 |
Exoribonuclease II [Transcription]; |
372-679 |
8.50e-27 |
|
Exoribonuclease II [Transcription];
Pssm-ID: 443808 [Multi-domain] Cd Length: 644 Bit Score: 116.49 E-value: 8.50e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 372 PWTIPpDEVGKRRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQK 451
Cdd:COG4776 180 EWELL-DEGLEREDLTALPFVTIDSESTEDMDDALYIEKLENGGWKLTVAIADPTAYIPEGSELDKEARQRAFTNYLPGF 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 452 VVPMLPRLLCEELCSLNP------------------MTDKLTFSVIW-----KL---------------TPEGK-----L 488
Cdd:COG4776 259 NIPMLPRELSDDLCSLKEnekrpalvcrvtidadgsIGDDIEFFAAWirskaKLaydnvsdwlegkgewQPENEeiaeqI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 489 KL--AFTL-------DH---------------ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHK--------IFRT-- 534
Cdd:COG4776 339 RLlhQFALarsqwrqQHalvfkdrpdyrfeldEKGNVLDIHAEPRRIANRIVEEAMIAANICAARVlrehlgfgIFNVhs 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 535 -F-PE-----QALLRRHPPPQTK-MLSDLVEFCdQMGLPMDVSSAGALNKSLTK--TFGDDKyslarkevltnmysrpmq 604
Cdd:COG4776 419 gFdPEkleqaVELLAEHGIEFDPeQLLTLEGFC-ALRRELDAQPTSYLDSRLRRfqTFAEIS------------------ 479
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039728073 605 malyfcsgmlqdQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALgySEQPDVEPD--TLQKQADHCNDRRMA 679
Cdd:COG4776 480 ------------TEPGPHFGLGLDAYATWTSPIRKYGDMVNHRLIKAVI--LGQPAEKPDeeLTERLAERRRLNRMA 542
|
|
| PRK05054 |
PRK05054 |
exoribonuclease II; Provisional |
372-683 |
3.82e-26 |
|
exoribonuclease II; Provisional
Pssm-ID: 179920 [Multi-domain] Cd Length: 644 Bit Score: 114.59 E-value: 3.82e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 372 PWTIPpDEVGKRRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQK 451
Cdd:PRK05054 180 AWEML-DEGLEREDLTALDFVTIDSASTEDMDDALYVEKLPDGGLQLTVAIADPTAYIAEGSKLDKAARQRAFTNYLPGF 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 452 VVPMLPRLLCEELCSLNP------------------MTDKLTFSVIWKltpEGKLKLA---------------------- 491
Cdd:PRK05054 259 NIPMLPRELSDDLCSLRPnerrpalacrvtidadgtIEDDIRFFAAWI---ESKAKLAydnvsdwlenggdwqpeseaia 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 492 -------------------------------FTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAH--------KIF 532
Cdd:PRK05054 336 eqirllhqfclarsewrkqhalvfkdrpdyrFELG-EKGEVLDIVAEPRRIANRIVEESMIAANICAARvlrdklgfGIY 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 533 RT-------FPEQA--LLRRHPPPQT-KMLSDLVEFCdQMGLPMDVSSAGALNKSLTK--TFGDDKYSLArkevltnmys 600
Cdd:PRK05054 415 NVhsgfdpaNAEQAvaLLKEHGLHFDaEELLTLEGFC-KLRRELDAQPTGYLDSRIRRfqSFAEISTEPG---------- 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 601 rPmqmalyfcsgmlqdqeqfrHYALNVPLYTHFTSPIRRFADVIVHRLLAAALGYSEQPDVEPDTLQKQADHCNDRRMAS 680
Cdd:PRK05054 484 -P-------------------HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAERPQDEITVQLAERRRLNRMAE 543
|
...
gi 1039728073 681 KRV 683
Cdd:PRK05054 544 RDV 546
|
|
| Rrp44_CSD1 |
pfam17216 |
Rrp44-like cold shock domain; |
50-250 |
2.34e-10 |
|
Rrp44-like cold shock domain;
Pssm-ID: 375054 Cd Length: 148 Bit Score: 59.40 E-value: 2.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 50 FETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEDQWKPritlsl 129
Cdd:pfam17216 4 FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKA------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728073 130 PGVLGLQAVKPESNDKeieatyeadipeegcghhplqqsrkgwsgPDviIEAQfDDSDSEDRHGNTSGLVDGVKKLsist 209
Cdd:pfam17216 78 PSSIVLDSEHFDVNDN-----------------------------PD--IEAG-DDDDNNESSSNTTVISDKQRRL---- 121
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1039728073 210 pdrgkedsstpVMKDenTPIPQDTrglseKSLQKSAKVVYI 250
Cdd:pfam17216 122 -----------LAKD--AMIAQRS-----KKIQPTAKVVYI 144
|
|
| |
