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Conserved domains on  [gi|1039741884|ref|XP_017170681|]
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tetratricopeptide repeat protein 6 isoform X9 [Mus musculus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11419012)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Gene Ontology:  GO:0005515
PubMed:  10517866|30708253

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
887-1014 2.30e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 79.67  E-value: 2.30e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG0457      6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039741884  967 FRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSK 1014
Cdd:COG0457     86 LQAlGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYER 135
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
887-1014 2.30e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 79.67  E-value: 2.30e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG0457      6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039741884  967 FRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSK 1014
Cdd:COG0457     86 LQAlGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYER 135
TPR_11 pfam13414
TPR repeat;
966-1002 2.15e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.76  E-value: 2.15e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1039741884  966 IFREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEK 1002
Cdd:pfam13414    3 AYYEQgKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 889-922 2.31e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 2.31e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1039741884   889 AFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFF 922
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
887-1014 2.30e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 79.67  E-value: 2.30e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG0457      6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039741884  967 FRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSK 1014
Cdd:COG0457     86 LQAlGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYER 135
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
885-1016 1.73e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 77.35  E-value: 1.73e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  885 KRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKA 964
Cdd:COG0457     38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1039741884  965 EIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKVL-AIDDYSKDI 1016
Cdd:COG0457    118 LALLElGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEeALELLEKLE 171
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 889-1014 1.04e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.59  E-value: 1.04e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  889 AFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI-F 967
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAlL 83

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1039741884  968 REKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSK 1014
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPdEAIAALEK 131
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
887-1017 1.86e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 61.85  E-value: 1.86e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG4785     71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1039741884  967 FREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKVLAIDDYSKDIP 1017
Cdd:COG4785    151 LYYLgRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEDWA 202
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 870-1014 4.03e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.67  E-value: 4.03e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  870 YESEVEKLTQEIKSEKRNlAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFI 949
Cdd:COG2956     58 YDRAIRIHQKLLERDPDR-AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL 136

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039741884  950 TKYNKNHAEAYLSKAEI-FREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSK 1014
Cdd:COG2956    137 LKLGPENAHAYCELAELyLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYeEAIAALER 203
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 879-1014 1.49e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.93  E-value: 1.49e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  879 QEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAE 958
Cdd:COG3914     68 AAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741884  959 AYLSKAEIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSK 1014
Cdd:COG3914    148 AYLNLGEALRRlGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLeEAIAAYRR 205
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
887-993 2.15e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 2.15e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG0457     74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153

                           90       100
                   ....*....|....*....|....*...
gi 1039741884  967 FRE-KDITLAILNYSQAIKCRPKDADLY 993
Cdd:COG0457    154 LEKlGRYEEALELLEKLEAAALAALLAA 181
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 873-989 2.76e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.35  E-value: 2.76e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  873 EVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKY 952
Cdd:COG4783     22 EAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL 101

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1039741884  953 NKNHAEAYLSKAEIFRE-KDITLAILNYSQAIKCRPKD 989
Cdd:COG4783    102 DPEHPEAYLRLARAYRAlGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 887-993 4.53e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 4.53e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG3914    110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189

                           90       100
                   ....*....|....*....|....*...
gi 1039741884  967 FRE-KDITLAILNYSQAIKCRPKDADLY 993
Cdd:COG3914    190 LQDlGRLEEAIAAYRRALELDPDNADAH 217
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 898-1014 1.75e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.88  E-value: 1.75e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  898 IYRKLGKLQSAMNDLQEAI--FQ-----EPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIF-RE 969
Cdd:COG2956     44 AHLALGNLYRRRGEYDRAIriHQkllerDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYeQE 123

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1039741884  970 KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSK 1014
Cdd:COG2956    124 GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYdEAIEALEK 169
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 889-1005 4.23e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 4.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  889 AFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIFR 968
Cdd:COG2956    144 AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE 223

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1039741884  969 E-KDITLAILNYSQAIKCRPkDADLYFKRGEMYEKTNK 1005
Cdd:COG2956    224 KlGDPEEALELLRKALELDP-SDDLLLALADLLERKEG 260
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
898-988 3.22e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 3.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  898 IYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALdDLNFITKYNKNHAEAYLSKAEI-FREKDITLAI 976
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELlLELGDYDEAL 79

                           90
                   ....*....|..
gi 1039741884  977 LNYSQAIKCRPK 988
Cdd:COG3063     80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 862-987 1.06e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.80  E-value: 1.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  862 LPPEVIKYYESEVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVND 941
Cdd:COG5010     27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE 106

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1039741884  942 ALDDLNFITKYNKNHAEAYLSKAEIF-REKDITLAILNYSQAIKCRP 987
Cdd:COG5010    107 AKEYYEKALALSPDNPNAYSNLAALLlSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 908-1014 1.23e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 1.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  908 AMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI-FREKDITLAILNYSQAIKCR 986
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAlLAAGDTEEAEELLERALALD 81

                           90       100
                   ....*....|....*....|....*....
gi 1039741884  987 PKDADLYFKRGEMYEKTNKV-LAIDDYSK 1014
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYaEAIAAWQK 110
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 912-1021 1.50e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 1.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  912 LQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI-FREKDITLAILNYSQAIKCRPKDA 990
Cdd:COG5010     43 AAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLySRSGDKDEAKEYYEKALALSPDNP 122

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1039741884  991 DLYFKRGEMYEKTNKV-LAIDDYSKDIPGKSI 1021
Cdd:COG5010    123 NAYSNLAALLLSLGQDdEAKAALQRALGTSPL 154
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
887-964 1.66e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.61  E-value: 1.66e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741884  887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKA 964
Cdd:COG0457    108 DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGE 185
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 932-1014 1.76e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.72  E-value: 1.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  932 IYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIFREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAI 1009
Cdd:COG2956     17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLdRAE 96


                   ....*
gi 1039741884 1010 DDYSK 1014
Cdd:COG2956     97 ELLEK 101
TPR_11 pfam13414
TPR repeat;
966-1002 2.15e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.76  E-value: 2.15e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1039741884  966 IFREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEK 1002
Cdd:pfam13414    3 AYYEQgKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
TPR_1 pfam00515
Tetratricopeptide repeat;
889-916 1.46e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 1.46e-03
                           10        20
                   ....*....|....*....|....*...
gi 1039741884  889 AFVYCRRGAIYRKLGKLQSAMNDLQEAI 916
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
932-1014 1.92e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 1.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741884  932 IYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIFRE-KDITLAIlNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAI 1009
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEqGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYdEAL 79


                   ....*
gi 1039741884 1010 DDYSK 1014
Cdd:COG3063     80 AYLER 84
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 889-922 2.31e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 2.31e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1039741884   889 AFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFF 922
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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