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Conserved domains on  [gi|1039741880|ref|XP_017170680|]
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tetratricopeptide repeat protein 6 isoform X8 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
951-1113 7.93e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 102.01  E-value: 7.93e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  951 KYNKNHAEAYLSKAEIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWK 1028
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRlGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDPDDAEALNN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1029 RGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY- 1107
Cdd:COG0457     82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYe 161


                   ....*.
gi 1039741880 1108 RALQDY 1113
Cdd:COG0457    162 EALELL 167
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1050-1228 4.87e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 93.92  E-value: 4.87e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1050 LKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY-RALQDYSVSVLINDgyDNLNC 1128
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDP--DDAEA 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1129 FLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKL 1208
Cdd:COG0457     79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                          170       180
                   ....*....|....*....|
gi 1039741880 1209 HKLKRAVIELTRAIHLQPDA 1228
Cdd:COG0457    158 GRYEEALELLEKLEAAALAA 177
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 879-1016 9.44e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 9.44e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  879 QEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAE 958
Cdd:COG3914     68 AAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  959 AYLSKAEIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCI 1016
Cdd:COG3914    148 AYLNLGEALRRlGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLeEAIAAYRRAL 207
PTZ00436 super family cl33183
60S ribosomal protein L19-like protein; Provisional
 13-178 9.37e-03

60S ribosomal protein L19-like protein; Provisional


The actual alignment was detected with superfamily member PTZ00436:

Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 39.93  E-value: 9.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880   13 REESYMFKELEKIRQKTKKDyEQLRQRLAAR-------------PTLKARYEDQEKEERPGTAGGSGEKKGHVSWAAKPS 79
Cdd:PTZ00436   133 RNKRNLMEHIHKVKNEKKKE-RQLAEQLAAKrlkdeqhrhkarkQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAP 211

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880   80 SGAQSGERPAAADLQGAPHSARGSPGKPQrfSPRDFYMRSSAFRRHPPYKEA-----PAIAPQVGTTRPVILLRPRSRRK 154
Cdd:PTZ00436   212 SGKKSAKAAAPAKAAAAPAKAAAPPAKAA--AAPAKAAAAPAKAAAPPAKAAappakAAAPPAKAAAPPAKAAAPPAKAA 289

                          170       180
                   ....*....|....*....|....
gi 1039741880  155 RLREKGRGAPVTTRVSKGRAQESP 178
Cdd:PTZ00436   290 APPAKAAAAPAKAAAAPAKAAAAP 313
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
951-1113 7.93e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 102.01  E-value: 7.93e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  951 KYNKNHAEAYLSKAEIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWK 1028
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRlGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDPDDAEALNN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1029 RGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY- 1107
Cdd:COG0457     82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYe 161


                   ....*.
gi 1039741880 1108 RALQDY 1113
Cdd:COG0457    162 EALELL 167
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1050-1228 4.87e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 93.92  E-value: 4.87e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1050 LKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY-RALQDYSVSVLINDgyDNLNC 1128
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDP--DDAEA 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1129 FLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKL 1208
Cdd:COG0457     79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                          170       180
                   ....*....|....*....|
gi 1039741880 1209 HKLKRAVIELTRAIHLQPDA 1228
Cdd:COG0457    158 GRYEEALELLEKLEAAALAA 177
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 879-1016 9.44e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 9.44e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  879 QEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAE 958
Cdd:COG3914     68 AAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  959 AYLSKAEIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCI 1016
Cdd:COG3914    148 AYLNLGEALRRlGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLeEAIAAYRRAL 207
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 896-1227 2.62e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 58.56  E-value: 2.62e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  896 GAIYRKLGKLQSAMNDLQEAIFQ--EPFFLNAYWHRhfIYLFQDKVNDALDDLnfiTKY----NKNHAE--AYLSKAEiF 967
Cdd:TIGR02917   63 GKIYLALGDYAAAEKELRKALSLgyPKNQVLPLLAR--AYLLQGKFQQVLDEL---PGKtlldDEGAAEllALRGLAY-L 136

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  968 REKDITLAILNYSQAIKCRPKDADL----------YFKRGEMYEKTNKVLAIDDyskciyynrKRSDALWKRGMFYFENG 1037
Cdd:TIGR02917  137 GLGQLELAQKSYEQALAIDPRSLYAklglaqlalaENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLG 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1038 NWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACL-FRKSSPYRALQDYSVS 1116
Cdd:TIGR02917  208 NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKKNYEDARETLQDA 287

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1117 VLINDGYdnLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIK---VDPL 1193
Cdd:TIGR02917  288 LKSAPEY--LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR-LGRVDEAIATLSPALGldpDDPA 364

                          330       340       350
                   ....*....|....*....|....*....|....
gi 1039741880 1194 YLQSYicrAETYSKLHKLKRAVIELTRAIHLQPD 1227
Cdd:TIGR02917  365 ALSLL---GEAYLALGDFEKAAEYLAKATELDPE 395
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 791-1110 2.21e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.47  E-value: 2.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  791 SVPTILNFDKFAESRGGIPKNTDPWTWVLELFAKDKprQTHTAVAS--SAQEDVPEPVIELSKLELSDHVKCNLPPEVIK 868
Cdd:TIGR02917  498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL--RAILALAGlyLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ 575

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  869 YYES-----EVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDAL 943
Cdd:TIGR02917  576 YYLGkgqlkKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  944 DDLNFITKYNKNHAEAYLSKAEIFREKDITLAILNYSQAI-KCRPKDADLYFKRGEMY-EKTNKVLAIDDYSKcIYYNRK 1021
Cdd:TIGR02917  656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLqKQHPKAALGFELEGDLYlRQKDYPAAIQAYRK-ALKRAP 734

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1022 RSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLF 1101
Cdd:TIGR02917  735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY 814


                   ....*....
gi 1039741880 1102 RKSSPYRAL 1110
Cdd:TIGR02917  815 LELKDPRAL 823
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 990-1110 7.45e-05

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 46.04  E-value: 7.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  990 ADLYFKRGEMYEKTN-KVLAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAvYD-FTSLLKLDPYNSKARTYRGRAY 1067
Cdd:PRK11189    64 AQLHYERGVLYDSLGlRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA-YEaFDSVLELDPTYNYAYLNRGIAL 142

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1039741880 1068 FKRNLYKQATQDFSAAIHLDPNNwvalyyraclfrkssPYRAL 1110
Cdd:PRK11189   143 YYGGRYELAQDDLLAFYQDDPND---------------PYRAL 170
TPR_11 pfam13414
TPR repeat;
966-1002 6.07e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.61  E-value: 6.07e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1039741880  966 IFREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEK 1002
Cdd:pfam13414    3 AYYEQgKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1057-1090 1.53e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 1.53e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1039741880  1057 SKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
889-916 4.13e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 4.13e-03
                           10        20
                   ....*....|....*....|....*...
gi 1039741880  889 AFVYCRRGAIYRKLGKLQSAMNDLQEAI 916
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 889-922 6.44e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 6.44e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1039741880   889 AFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFF 922
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 13-178 9.37e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 39.93  E-value: 9.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880   13 REESYMFKELEKIRQKTKKDyEQLRQRLAAR-------------PTLKARYEDQEKEERPGTAGGSGEKKGHVSWAAKPS 79
Cdd:PTZ00436   133 RNKRNLMEHIHKVKNEKKKE-RQLAEQLAAKrlkdeqhrhkarkQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAP 211

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880   80 SGAQSGERPAAADLQGAPHSARGSPGKPQrfSPRDFYMRSSAFRRHPPYKEA-----PAIAPQVGTTRPVILLRPRSRRK 154
Cdd:PTZ00436   212 SGKKSAKAAAPAKAAAAPAKAAAPPAKAA--AAPAKAAAAPAKAAAPPAKAAappakAAAPPAKAAAPPAKAAAPPAKAA 289

                          170       180
                   ....*....|....*....|....
gi 1039741880  155 RLREKGRGAPVTTRVSKGRAQESP 178
Cdd:PTZ00436   290 APPAKAAAAPAKAAAAPAKAAAAP 313
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
951-1113 7.93e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 102.01  E-value: 7.93e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  951 KYNKNHAEAYLSKAEIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWK 1028
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRlGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDPDDAEALNN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1029 RGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY- 1107
Cdd:COG0457     82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYe 161


                   ....*.
gi 1039741880 1108 RALQDY 1113
Cdd:COG0457    162 EALELL 167
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 932-1225 1.42e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 95.95  E-value: 1.42e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  932 IYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIFREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAI 1009
Cdd:COG2956     17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLdRAE 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1010 DDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPN 1089
Cdd:COG2956     97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1090 NWVALYYRACLfrksspYRALQDYSvsvlindgydnlncflhrgilytqlkfwmLAICDFETVVSLERNATLAYINIGII 1169
Cdd:COG2956    177 CARALLLLAEL------YLEQGDYE-----------------------------EAIAALERALEQDPDYLPALPRLAEL 221

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741880 1170 YlEHLDNYTEAFWWFTEAIKVDPLYLQsYICRAETYSKLHKLKRAVIELTRAIHLQ 1225
Cdd:COG2956    222 Y-EKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQLRRH 275
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
937-1113 2.67e-21

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 93.83  E-value: 2.67e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  937 DKVNDALDDLNFITKYNKNHAEAYLSKAEIFREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKC 1015
Cdd:COG4785     20 SKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYdLAIADFDQA 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1016 IYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALY 1095
Cdd:COG4785    100 LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAL 179

                          170
                   ....*....|....*...
gi 1039741880 1096 YRACLFRKSSPYRALQDY 1113
Cdd:COG4785    180 WLYLAERKLDPEKALALL 197
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1050-1228 4.87e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 93.92  E-value: 4.87e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1050 LKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY-RALQDYSVSVLINDgyDNLNC 1128
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDP--DDAEA 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1129 FLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKL 1208
Cdd:COG0457     79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                          170       180
                   ....*....|....*....|
gi 1039741880 1209 HKLKRAVIELTRAIHLQPDA 1228
Cdd:COG0457    158 GRYEEALELLEKLEAAALAA 177
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
887-1076 1.78e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.99  E-value: 1.78e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG0457      6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  967 FRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVY 1044
Cdd:COG0457     86 LQAlGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1039741880 1045 DFTSLLKLDPYNSKARTYRGRAYFKRNLYKQA 1076
Cdd:COG0457    166 LLEKLEAAALAALLAAALGEAALALAAAEVLL 197
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
983-1224 3.29e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.22  E-value: 3.29e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  983 IKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKART 1061
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYeEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1062 YRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY-RALQDYSVSVLINDgyDNLNCFLHRGILYTQLK 1140
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDP--DDADALYNLGIALEKLG 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1141 FWMLAICDFEtvvSLERNATLAYINIGIIYLEHLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTR 1220
Cdd:COG0457    159 RYEEALELLE---KLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235


                   ....
gi 1039741880 1221 AIHL 1224
Cdd:COG0457    236 AALA 239
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 898-1114 3.37e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 86.32  E-value: 3.37e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  898 IYRKLGKLQSAMNDLQEAI--FQ-----EPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIF-RE 969
Cdd:COG2956     44 AHLALGNLYRRRGEYDRAIriHQkllerDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYeQE 123

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  970 KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTS 1048
Cdd:COG2956    124 GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYdEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER 203

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741880 1049 LLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPYRALQDYS 1114
Cdd:COG2956    204 ALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLE 269
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1029-1234 2.68e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 83.63  E-value: 2.68e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1029 RGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKS-SPY 1107
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAgLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1108 RALQDYsvSVLINDGYDNLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEA 1187
Cdd:COG2956     94 RAEELL--EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLE-QGDYDEAIEALEKA 170

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1039741880 1188 IKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIM 1234
Cdd:COG2956    171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPR 217
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 870-1087 6.22e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 76.69  E-value: 6.22e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  870 YESEVEKLTQEIKSEKRNlAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFI 949
Cdd:COG2956     58 YDRAIRIHQKLLERDPDR-AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL 136

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  950 TKYNKNHAEAYLSKAEI-FREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALW 1027
Cdd:COG2956    137 LKLGPENAHAYCELAELyLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYeEAIAALERALEQDPDYLPALP 216

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1028 KRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYrGRAYFKRNLYKQATQDFSAAIHLD 1087
Cdd:COG2956    217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLRRH 275
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1063-1236 6.55e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 75.34  E-value: 6.55e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1063 RGRAYFKRNLYKQATQDFSAAIHLDPNNWValYYRACLFRKSSPYRALQDYSVSVLINDGY-------DNLNCFLHRGIL 1135
Cdd:COG4785      5 ALALLLALALAAAAASKAAILLAALLFAAV--LALAIALADLALALAAAALAAAALAAERIdralalpDLAQLYYERGVA 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1136 YTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAV 1215
Cdd:COG4785     83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLL-LGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161

                          170       180
                   ....*....|....*....|.
gi 1039741880 1216 IELTRAIHLQPDAIHLYIMRY 1236
Cdd:COG4785    162 ADLEKALELDPNDPERALWLY 182
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
885-1027 6.79e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.81  E-value: 6.79e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  885 KRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKA 964
Cdd:COG0457     38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039741880  965 EIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKVL-AIDDYSKCIYYNRKRSDALW 1027
Cdd:COG0457    118 LALLElGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEeALELLEKLEAAALAALLAAA 182
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
952-1172 1.79e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 74.18  E-value: 1.79e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  952 YNKNHAEAYLSKAEIFREKDITLAILNYSQAikcRPKDADLYFKRGEMYEKTNKVLA----IDDYSKCIYYNRKRSDALW 1027
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLF---AAVLALAIALADLALALAAAALAaaalAAERIDRALALPDLAQLYY 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1028 KRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNnwvalYYRAclfrksspy 1107
Cdd:COG4785     78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD-----YAYA--------- 143

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039741880 1108 ralqdysvsvlindgydnlncFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLE 1172
Cdd:COG4785    144 ---------------------YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERK 187
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 975-1090 2.94e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 70.81  E-value: 2.94e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  975 AILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLD 1053
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYdEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1039741880 1054 PYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 957-1090 4.86e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 4.86e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  957 AEAYLSKAEI-FREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYF 1034
Cdd:COG4783      4 AEALYALAQAlLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLdEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741880 1035 ENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 989-1103 2.24e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.90  E-value: 2.24e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  989 DADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAY 1067
Cdd:COG4783      3 CAEALYALAQALLLAGDYdEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1039741880 1068 FKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRK 1103
Cdd:COG4783     83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 889-1016 1.80e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.21  E-value: 1.80e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  889 AFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI-F 967
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAlL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039741880  968 REKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCI 1016
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPdEAIAALEKAL 133
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1008-1113 9.01e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.09  E-value: 9.01e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1008 AIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLD 1087
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100
                   ....*....|....*....|....*..
gi 1039741880 1088 PNNWVALYYRA-CLFRKSSPYRALQDY 1113
Cdd:COG4235     82 PDNPEALYLLGlAAFQQGDYAEAIAAW 108
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 879-1016 9.44e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 9.44e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  879 QEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAE 958
Cdd:COG3914     68 AAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  959 AYLSKAEIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCI 1016
Cdd:COG3914    148 AYLNLGEALRRlGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLeEAIAAYRRAL 207
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1059-1227 1.07e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 1.07e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1059 ARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRaclfrksspyralqdysvsvlindgydnlncflhrGILYTQ 1138
Cdd:COG4783      6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALL-----------------------------------GEILLQ 50

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1139 LKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIEL 1218
Cdd:COG4783     51 LGDLDEAIVLLHEALELDPDEPEARLNLGLALLK-AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129


                   ....*....
gi 1039741880 1219 TRAIHLQPD 1227
Cdd:COG4783    130 EKALELDPD 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 905-1113 1.19e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 1.19e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  905 LQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI----------FREKDITL 974
Cdd:COG3914     17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAallelaalllQALGRYEE 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  975 AILNYSQAIKCRPKDADLYFKRGEMYEKTNKVL-AIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLD 1053
Cdd:COG3914     97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEeALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741880 1054 PYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPN------NWVALYYRACLFRKSSPYRALQDY 1113
Cdd:COG3914    177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDnadahsNLLFALRQACDWEVYDRFEELLAA 242
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
992-1091 1.36e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 56.33  E-value: 1.36e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  992 LYFKRGEmYEKtnkvlAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVyDFTSLLKLDPYNSKARTYRGRAYFKRN 1071
Cdd:COG3063      1 LYLKLGD-LEE-----AEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELG 73

                           90       100
                   ....*....|....*....|
gi 1039741880 1072 LYKQATQDFSAAIHLDPNNW 1091
Cdd:COG3063     74 DYDEALAYLERALELDPSAL 93
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 941-1065 2.01e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.94  E-value: 2.01e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  941 DALDDLNFITKYNKNHAEAYLSKAEI-FREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYY 1018
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAyLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTeEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1039741880 1019 NRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGR 1065
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 988-1113 4.46e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 56.51  E-value: 4.46e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  988 KDADLYFKRGEMYEKTNKVLAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAY 1067
Cdd:COG5010     19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLY 98

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1039741880 1068 FKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY-RALQDY 1113
Cdd:COG5010     99 SRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDdEAKAAL 145
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 873-989 6.78e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 6.78e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  873 EVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKY 952
Cdd:COG4783     22 EAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL 101

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1039741880  953 NKNHAEAYLSKAEIFRE-KDITLAILNYSQAIKCRPKD 989
Cdd:COG4783    102 DPEHPEAYLRLARAYRAlGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1153-1235 1.11e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.32  E-value: 1.11e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1153 VSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLY 1232
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRR-LGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79


                   ...
gi 1039741880 1233 IMR 1235
Cdd:COG0457     80 NNL 82
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 931-1088 1.99e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.97  E-value: 1.99e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  931 FIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIFREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEktnkvlAID 1010
Cdd:COG5010      2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEE------SLA 75

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741880 1011 DYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDP 1088
Cdd:COG5010     76 LLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 896-1227 2.62e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 58.56  E-value: 2.62e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  896 GAIYRKLGKLQSAMNDLQEAIFQ--EPFFLNAYWHRhfIYLFQDKVNDALDDLnfiTKY----NKNHAE--AYLSKAEiF 967
Cdd:TIGR02917   63 GKIYLALGDYAAAEKELRKALSLgyPKNQVLPLLAR--AYLLQGKFQQVLDEL---PGKtlldDEGAAEllALRGLAY-L 136

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  968 REKDITLAILNYSQAIKCRPKDADL----------YFKRGEMYEKTNKVLAIDDyskciyynrKRSDALWKRGMFYFENG 1037
Cdd:TIGR02917  137 GLGQLELAQKSYEQALAIDPRSLYAklglaqlalaENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLG 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1038 NWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACL-FRKSSPYRALQDYSVS 1116
Cdd:TIGR02917  208 NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKKNYEDARETLQDA 287

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1117 VLINDGYdnLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIK---VDPL 1193
Cdd:TIGR02917  288 LKSAPEY--LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR-LGRVDEAIATLSPALGldpDDPA 364

                          330       340       350
                   ....*....|....*....|....*....|....
gi 1039741880 1194 YLQSYicrAETYSKLHKLKRAVIELTRAIHLQPD 1227
Cdd:TIGR02917  365 ALSLL---GEAYLALGDFEKAAEYLAKATELDPE 395
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 887-1035 4.97e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 4.97e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG3914    110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  967 FRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKVLAIDDYSKCIYYNRKRSDALWKRGMFYFE 1035
Cdd:COG3914    190 LQDlGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLP 259
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1132-1235 5.33e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.89  E-value: 5.33e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1132 RGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLeHLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKL 1211
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILL-QLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88

                           90       100
                   ....*....|....*....|....
gi 1039741880 1212 KRAVIELTRAIHLQPDAIHLYIMR 1235
Cdd:COG4783     89 DEALALLEKALKLDPEHPEAYLRL 112
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 791-1110 2.21e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.47  E-value: 2.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  791 SVPTILNFDKFAESRGGIPKNTDPWTWVLELFAKDKprQTHTAVAS--SAQEDVPEPVIELSKLELSDHVKCNLPPEVIK 868
Cdd:TIGR02917  498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL--RAILALAGlyLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ 575

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  869 YYES-----EVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDAL 943
Cdd:TIGR02917  576 YYLGkgqlkKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  944 DDLNFITKYNKNHAEAYLSKAEIFREKDITLAILNYSQAI-KCRPKDADLYFKRGEMY-EKTNKVLAIDDYSKcIYYNRK 1021
Cdd:TIGR02917  656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLqKQHPKAALGFELEGDLYlRQKDYPAAIQAYRK-ALKRAP 734

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1022 RSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLF 1101
Cdd:TIGR02917  735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY 814


                   ....*....
gi 1039741880 1102 RKSSPYRAL 1110
Cdd:TIGR02917  815 LELKDPRAL 823
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 892-1224 2.24e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 55.38  E-value: 2.24e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  892 YCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLN---FITKYNKNHAEAYL------- 961
Cdd:TIGR00990  163 YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTascIIDGFRNEQSAQAVerllkkf 242

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  962 --SKA-EIFREKDITL----AILNYSQAIKCRPK----------DADLYFKRGEMYEKTNKVLAIDDYSKCIYYNRKRSD 1024
Cdd:TIGR00990  243 aeSKAkEILETKPENLpsvtFVGNYLQSFRPKPRpagledsnelDEETGNGQLQLGLKSPESKADESYEEAARAFEKALD 322

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1025 ----------ALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVAL 1094
Cdd:TIGR00990  323 lgklgekeaiALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY 402

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1095 YYRACL-FRKSSPYRALQDYSVSVLIND----GYDNLNCFLHR-----------------------------GILYTQLK 1140
Cdd:TIGR00990  403 YHRAQLhFIKGEFAQAGKDYQKSIDLDPdfifSHIQLGVTQYKegsiassmatfrrckknfpeapdvynyygELLLDQNK 482

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1141 FwMLAICDFETVVSLERNATLAYINI------GIIYLEHLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRA 1214
Cdd:TIGR00990  483 F-DEAIEKFDTAIELEKETKPMYMNVlplinkALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561

                          410
                   ....*....|
gi 1039741880 1215 VIELTRAIHL 1224
Cdd:TIGR00990  562 LKLFERAAEL 571
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 895-1233 2.31e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.47  E-value: 2.31e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  895 RGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI-FREKDIT 973
Cdd:TIGR02917  199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKKNYE 278

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  974 LAILNYSQAIKCRPK--DADLY-----FKRGEM---YEKTNKVLAIDDYSkciyYNRKRSDAlwkrgMFYFENGNWIGAV 1043
Cdd:TIGR02917  279 DARETLQDALKSAPEylPALLLagaseYQLGNLeqaYQYLNQILKYAPNS----HQARRLLA-----SIQLRLGRVDEAI 349

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1044 YDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNwVALYYRACLF-----RKSSPYRALQDYS---- 1114
Cdd:TIGR02917  350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN-AAARTQLGISklsqgDPSEAIADLETAAqldp 428

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1115 ----VSVLINDGY---------------------DNLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGII 1169
Cdd:TIGR02917  429 elgrADLLLILSYlrsgqfdkalaaakklekkqpDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039741880 1170 YLEHlDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYI 1233
Cdd:TIGR02917  509 DIQE-GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1059-1232 8.68e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.46  E-value: 8.68e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1059 ARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNW-VALYYRACLFRKSSPYRALQDYSVSVLINDGYDNLNCFLHRGILYT 1137
Cdd:COG3914      3 AAALLALAALAAAALLAAAAAAELALAAELEAAaLAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1138 QLKFWMLAICDFETVVSLERNA-------TLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHK 1210
Cdd:COG3914     83 LAALLLQALGRYEEALALYRRAlalnpdnAEALFNLGNLLLA-LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161

                          170       180
                   ....*....|....*....|..
gi 1039741880 1211 LKRAVIELTRAIHLQPDAIHLY 1232
Cdd:COG3914    162 LEEAIAALRRALELDPDNAEAL 183
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 868-1234 1.35e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.70  E-value: 1.35e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  868 KYYESEVEKLTQEIKSEKRNLAFVYCRrGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLN 947
Cdd:TIGR02917  275 KNYEDARETLQDALKSAPEYLPALLLA-GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLS 353

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  948 FITKYNKNHAEAYLSKAEIFREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDA 1025
Cdd:TIGR02917  354 PALGLDPDDPAALSLLGEAYLALgDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPsEAIADLETAAQLDPELGRA 433

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1026 LWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACL-FRKS 1104
Cdd:TIGR02917  434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIdIQEG 513

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1105 SPYRALQDYSVSVLINDGydNLNCflhrgilytqlkfwMLAICDFEtvvslERNAtlayinigiiylehldNYTEAFWWF 1184
Cdd:TIGR02917  514 NPDDAIQRFEKVLTIDPK--NLRA--------------ILALAGLY-----LRTG----------------NEEEAVAWL 556

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1185 TEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIM 1234
Cdd:TIGR02917  557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1135-1228 2.66e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 2.66e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1135 LYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWwFTEAIKVDPLYLQSYICRAETYSKLHKLKRA 1214
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLE-QGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78

                           90
                   ....*....|....
gi 1039741880 1215 VIELTRAIHLQPDA 1228
Cdd:COG3063     79 LAYLERALELDPSA 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1134-1226 5.67e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 5.67e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1134 ILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKR 1213
Cdd:COG5010     62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR-SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140

                           90
                   ....*....|...
gi 1039741880 1214 AVIELTRAIHLQP 1226
Cdd:COG5010    141 AKAALQRALGTSP 153
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 990-1110 7.45e-05

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 46.04  E-value: 7.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  990 ADLYFKRGEMYEKTN-KVLAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAvYD-FTSLLKLDPYNSKARTYRGRAY 1067
Cdd:PRK11189    64 AQLHYERGVLYDSLGlRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA-YEaFDSVLELDPTYNYAYLNRGIAL 142

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1039741880 1068 FKRNLYKQATQDFSAAIHLDPNNwvalyyraclfrkssPYRAL 1110
Cdd:PRK11189   143 YYGGRYELAQDDLLAFYQDDPND---------------PYRAL 170
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 967-1066 8.09e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.06  E-value: 8.09e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  967 FREKDITLAILNYSQAIKCRPKD---ADLYFKRGEMYEKTNK-VLAIDDYSKCIYY---NRKRSDALWKRGMFYFENGNW 1039
Cdd:COG1729      4 LKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDyDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDY 83

                           90       100
                   ....*....|....*....|....*..
gi 1039741880 1040 IGAVYDFTSLLKLDPYNSKARTYRGRA 1066
Cdd:COG1729     84 DKARATLEELIKKYPDSEAAKEARARL 110
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 881-1237 9.21e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 9.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  881 IKSEKRNlAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAY 960
Cdd:TIGR02917  458 EKKQPDN-ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  961 LSKAEIFREKDITLAILN-YSQAIKCRPKDADLYFKRGEMYEKTN---KVLAI-DDYSKciyyNRKRSDALWK-RGMFYF 1034
Cdd:TIGR02917  537 LALAGLYLRTGNEEEAVAwLEKAAELNPQEIEPALALAQYYLGKGqlkKALAIlNEAAD----AAPDSPEAWLmLGRAQL 612

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1035 ENGNWIGAVYDFTSLLKLDPYN-----------------SKARTY----------------------------------- 1062
Cdd:TIGR02917  613 AAGDLNKAVSSFKKLLALQPDSalalllladayavmknyAKAITSlkralelkpdnteaqiglaqlllaakrtesakkia 692

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1063 ----------------RGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPYRALQDYSVSvlINDGYDNL 1126
Cdd:TIGR02917  693 kslqkqhpkaalgfelEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAW--LKTHPNDA 770

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1127 NCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEHLDnyTEAFWWFTEAIKVDPLYLQSyicrAETYS 1206
Cdd:TIGR02917  771 VLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD--PRALEYAERALKLAPNIPAI----LDTLG 844

                          410       420       430
                   ....*....|....*....|....*....|....*
gi 1039741880 1207 KL--HK--LKRAVIELTRAIHLQPDAIHLyimRYH 1237
Cdd:TIGR02917  845 WLlvEKgeADRALPLLRKAVNIAPEAAAI---RYH 876
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
898-988 1.03e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.46  E-value: 1.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  898 IYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALdDLNFITKYNKNHAEAYLSKAEI-FREKDITLAI 976
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELlLELGDYDEAL 79

                           90
                   ....*....|..
gi 1039741880  977 LNYSQAIKCRPK 988
Cdd:COG3063     80 AYLERALELDPS 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1066-1196 1.82e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 1.82e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1066 AYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLfrksspYRALQDYSvsvlindgydnlncflhrgilytqlkfwmLA 1145
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLL------LLEQGRYD-----------------------------EA 45

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1039741880 1146 IcDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQ 1196
Cdd:COG3063     46 I-ALEKALKLDPNNAEALLNLAELLLE-LGDYDEALAYLERALELDPSALR 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1059-1193 2.54e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 2.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1059 ARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRaclfrksspyralqdysvsvlindgydnlncflhrGILYTQ 1138
Cdd:COG5010     56 IESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL-----------------------------------ALLYSR 100

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1039741880 1139 LKFWMLAICDFETVVSLERNATLAYINIGIIYLeHLDNYTEAFWWFTEAIKVDPL 1193
Cdd:COG5010    101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLL-SLGQDDEAKAALQRALGTSPL 154
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 862-987 5.07e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 5.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880  862 LPPEVIKYYESEVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVND 941
Cdd:COG5010     27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE 106

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1039741880  942 ALDDLNFITKYNKNHAEAYLSKAEIF-REKDITLAILNYSQAIKCRP 987
Cdd:COG5010    107 AKEYYEKALALSPDNPNAYSNLAALLlSLGQDDEAKAALQRALGTSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1033-1113 5.35e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 5.35e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1033 YFENGNWIGAVYDFTSLLKLDP---YNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWV---ALYYRA-CLFRKSS 1105
Cdd:COG1729      3 LLKAGDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGlSYLELGD 82


                   ....*...
gi 1039741880 1106 PYRALQDY 1113
Cdd:COG1729     83 YDKARATL 90
TPR_11 pfam13414
TPR repeat;
966-1002 6.07e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.61  E-value: 6.07e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1039741880  966 IFREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEK 1002
Cdd:pfam13414    3 AYYEQgKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1125-1233 8.36e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.44  E-value: 8.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1125 NLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIG-IIYLEHLDNYTEAFWWFTEAIKVDPLYLQSYICRAE 1203
Cdd:COG3914     41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELaALLLQALGRYEEALALYRRALALNPDNAEALFNLGN 120

                           90       100       110
                   ....*....|....*....|....*....|
gi 1039741880 1204 TYSKLHKLKRAVIELTRAIHLQPDAIHLYI 1233
Cdd:COG3914    121 LLLALGRLEEALAALRRALALNPDFAEAYL 150
TPR_1 pfam00515
Tetratricopeptide repeat;
1057-1090 1.19e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 1.19e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1039741880 1057 SKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1057-1090 1.53e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 1.53e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1039741880  1057 SKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1124-1235 2.72e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 2.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1124 DNLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLeHLDNYTEAFWWFTEAIKVDPLYLQSYICRAE 1203
Cdd:COG4235     15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALL-AAGDTEEAEELLERALALDPDNPEALYLLGL 93

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1039741880 1204 TYSKLHKLKRAVIELTRAIHLQPDAIHLYIMR 1235
Cdd:COG4235     94 AAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
TPR_1 pfam00515
Tetratricopeptide repeat;
889-916 4.13e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 4.13e-03
                           10        20
                   ....*....|....*....|....*...
gi 1039741880  889 AFVYCRRGAIYRKLGKLQSAMNDLQEAI 916
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 889-922 6.44e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 6.44e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1039741880   889 AFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFF 922
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1024-1235 6.44e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 6.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1024 DALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRK 1103
Cdd:TIGR02917   23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLL 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880 1104 SSPYRALQDYSVSVLINDGYDNLNCFLHRGILYTQLKFWMLAICDFETvvSLERNATLAYINIGIIYLEHLDN-YTEAFW 1182
Cdd:TIGR02917  103 QGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQ--ALAIDPRSLYAKLGLAQLALAENrFDEARA 180

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1039741880 1183 WFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMR 1235
Cdd:TIGR02917  181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLAL 233
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1159-1227 8.96e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 8.96e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039741880 1159 ATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPD 1227
Cdd:COG5010     53 AFAIESPSDNLYNK-LGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD 120
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 13-178 9.37e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 39.93  E-value: 9.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880   13 REESYMFKELEKIRQKTKKDyEQLRQRLAAR-------------PTLKARYEDQEKEERPGTAGGSGEKKGHVSWAAKPS 79
Cdd:PTZ00436   133 RNKRNLMEHIHKVKNEKKKE-RQLAEQLAAKrlkdeqhrhkarkQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAP 211

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741880   80 SGAQSGERPAAADLQGAPHSARGSPGKPQrfSPRDFYMRSSAFRRHPPYKEA-----PAIAPQVGTTRPVILLRPRSRRK 154
Cdd:PTZ00436   212 SGKKSAKAAAPAKAAAAPAKAAAPPAKAA--AAPAKAAAAPAKAAAPPAKAAappakAAAPPAKAAAPPAKAAAPPAKAA 289

                          170       180
                   ....*....|....*....|....
gi 1039741880  155 RLREKGRGAPVTTRVSKGRAQESP 178
Cdd:PTZ00436   290 APPAKAAAAPAKAAAAPAKAAAAP 313
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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