|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
170-797 |
7.42e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 7.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 170 ELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAekrtvvQKELLE--STIARLQGElKASLQEKKSLLEKNewfQREVNK 247
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEEL------QKELYAlaNEISRLEQQ-KQILRERLANLERQ---LEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 248 TEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKAtsDYQGKVEKALEKITDSKNMLAYEKGK 327
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE--ELEEQLETLRSKVAQLELQIASLNNE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 328 LQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQAnsELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDA 407
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 408 ALKESQKLKGDLKALEDRESKKVGNFQ--KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVqieLGRR---------- 475
Cdd:TIGR02168 480 AERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRlqavvvenln 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 476 --DSEIAGLKKER----------SLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLD----------------- 526
Cdd:TIGR02168 557 aaKKAIAFLKQNElgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnale 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 527 ------------------------ITREDNRKLAMSLEQAlQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEE-S 581
Cdd:TIGR02168 637 lakklrpgyrivtldgdlvrpggvITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELEKALAELRKELEELEEElE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 582 KVEAELHAER--IEALRKQFQTERETAKKASQR-------------EVSELKKALDEANFRSVEVSRANRELRHKATELE 646
Cdd:TIGR02168 716 QLRKELEELSrqISALRKDLARLEAEVEQLEERiaqlskelteleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 647 KVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERM-KQIEMELRQMEIIKDQYQKKNYEQ---SLSIQRFVSEMNTLQKEM 722
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLeRRIAATERRLEDLEEQIEELSEDIeslAAEIEELEELIEELESEL 875
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730358 723 ELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEAHR 797
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
474-748 |
9.15e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 9.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 474 RRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSeiepLQKSLDITREDNRKLAMSLEQALQTNGHLQSKL 553
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 554 DHLQEKLESKERERQSLEAfKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDEANfrsvEVSR 633
Cdd:COG1196 312 RELEERLEELEEELAELEE-ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE----ELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 634 ANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVS 713
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270
....*....|....*....|....*....|....*
gi 1039730358 714 EMNTLQKEMELLTKSQYETSARNKQQELRLVAERK 748
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
223-818 |
3.92e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 3.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 223 ELKASLQEKKSLLEKNEWFQREVNKTEkevakekcnLEKELAESKEDINVLNQNLQTLmeENKHLTNKMASLEHHKATSD 302
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEE---------LEAELEELEAELEELEAELAEL--EAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 303 YQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEA 382
Cdd:COG1196 286 AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 383 HLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDnckvtimlenvLASHSKMQ 462
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL-----------EEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 463 GALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQA 542
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 543 LQTNGHLQSklDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALD 622
Cdd:COG1196 515 LLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 623 EANFRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNY 702
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 703 EQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEAS 782
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
570 580 590
....*....|....*....|....*....|....*.
gi 1039730358 783 VESEQITANLEEAHRwfkcrfdglQLELTKNRLQRL 818
Cdd:COG1196 753 LEELPEPPDLEELER---------ELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
300-648 |
1.15e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 300 TSDYQGKVEKALEKITDSKNMLayekGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKAL-EVKYTQANSELSASKAYLE 378
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENI----ERLDLIIDEKRQQLERLRREREKAERYQALLKEKrEYEGYELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 379 QTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVgnfQKQLAEAKEDNCKVTIMLENVLASH 458
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV---KEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 459 SKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEaqhgSEIEPLQKSLDITREDNRKLAMS 538
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR----AELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 539 LEQALQTNGHLQSKLDHLQEKLESKERERQSLEAfkeqvaeeskveaelHAERIEALRKQFQTERETAK---KASQREVS 615
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNA---------------AIAGIEAKINELEEEKEDKAleiKKQEWKLE 458
|
330 340 350
....*....|....*....|....*....|....*..
gi 1039730358 616 ELKKALDEANFR----SVEVSRANRELRHKATELEKV 648
Cdd:TIGR02169 459 QLAADLSKYEQElydlKEEYDRVEKELSKLQRELAEA 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
539-812 |
4.32e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 4.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 539 LEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQF-QTERETAKKasQREVSEL 617
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKeAIERQLASL--EEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 618 KKALDEANFRSVEVSR----ANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNME-RMKQIEMELRQMEI 692
Cdd:TIGR02169 257 TEEISELEKRLEEIEQlleeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEeRLAKLEAEIDKLLA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 693 IKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKmrlELENRCKELEETIRHLKRCKE 772
Cdd:TIGR02169 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---KLEKLKREINELKRELDRLQE 413
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1039730358 773 ATEnKLKEASVESEQITANLEEAHRWFKCRFDGLQLELTK 812
Cdd:TIGR02169 414 ELQ-RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-679 |
1.14e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 2 LLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQIS 81
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 82 LKKEHEENIYLKSEILSLQDvsgKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMIT-----ETFQEQ 156
Cdd:TIGR02168 311 LANLERQLEELEAQLEELES---KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEleeqlETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 157 NLLLDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQK-ELLESTIARLQGELKASLQEKKSLL 235
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 236 EKNEWFQREVNKTEKEVA--KEKCNLEKELAESKEDinvLNQNLQTLMEENKHLTNKMASL-EHHKATSDYQGKVEKALE 312
Cdd:TIGR02168 468 EELEEAEQALDAAERELAqlQARLDSLERLQENLEG---FSEGVKALLKNQSGLSGILGVLsELISVDEGYEAAIEAALG 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 313 KI-------TDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAY--------- 376
Cdd:TIGR02168 545 GRlqavvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllgg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 377 ------LEQTEAHLKEMKS----------------ILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQ 434
Cdd:TIGR02168 625 vlvvddLDNALELAKKLRPgyrivtldgdlvrpggVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELR 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 435 KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQH 514
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 515 GSEIEPLQKSLDITREDNRKLAmSLEQALQTnghLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAElHAERIEA 594
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALD-ELRAELTL---LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE-DIESLAA 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 595 LRKQFQTERETAKKASQR---EVSELKKALDEANFRSVEVSRANRELRHKATELEKvvnsNKEKLKNQRAQIKLHLS-AK 670
Cdd:TIGR02168 860 EIEELEELIEELESELEAllnERASLEEALALLRSELEELSEELRELESKRSELRR----ELEELREKLAQLELRLEgLE 935
|
....*....
gi 1039730358 671 ANNAQNMER 679
Cdd:TIGR02168 936 VRIDNLQER 944
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
556-829 |
1.90e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 556 LQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQtERETAKKASQREVSELKKALDEANFRSVEVSRAN 635
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELE-ELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 636 RELRHKATELEKVVNSNKEKLKNQRAQIKLHlsakannaqnMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEM 715
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQIL----------RERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 716 NTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIrhlkrckEATENKLKEASVESEQITANLEEA 795
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI-------ASLNNEIERLEARLERLEDRRERL 419
|
250 260 270
....*....|....*....|....*....|....
gi 1039730358 796 HRWFKCRFDGLQLELTKNRLQRLPREDRWLEENQ 829
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
259-790 |
3.94e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.97 E-value: 3.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 259 LEKELAESKEDINVLNQNLQTLME--------ENKHLTNKMASLEHHkaTSDYQGKVEKALEKITDSKNMLAYEKGKLQT 330
Cdd:pfam15921 247 LEALKSESQNKIELLLQQHQDRIEqlisehevEITGLTEKASSARSQ--ANSIQSQLEIIQEQARNQNSMYMRQLSDLES 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 331 KVKQLEAQLHTFAETMlqKDHLHKLNKALEVkytqANSELSASKAYLEQ-------TEAHLKEMKSILGKNEEELAqavk 403
Cdd:pfam15921 325 TVSQLRSELREAKRMY--EDKIEELEKQLVL----ANSELTEARTERDQfsqesgnLDDQLQKLLADLHKREKELS---- 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 404 crdaaLKESQKlkgdlKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLK 483
Cdd:pfam15921 395 -----LEKEQN-----KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 484 KERSLNQQRVQKLEAEVDQWQARMLIVEAQH------GSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQ 557
Cdd:pfam15921 465 SLTAQLESTKEMLRKVVEELTAKKMTLESSErtvsdlTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 558 EKleskereRQSLEAFKEQVAEESKVeaelhaerIEALRKQFQTERETAKKASQrevselkkaldEANFRSVEVSRANRE 637
Cdd:pfam15921 545 NV-------QTECEALKLQMAEKDKV--------IEILRQQIENMTQLVGQHGR-----------TAGAMQVEKAQLEKE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 638 LRHKATELEKVvnsnkEKLKNQRAQIKLHLSAKANNAQnMERMKQIEMELRQMEIIKDQYQKKNYEQSlSIQRFVSEMNT 717
Cdd:pfam15921 599 INDRRLELQEF-----KILKDKKDAKIRELEARVSDLE-LEKVKLVNAGSERLRAVKDIKQERDQLLN-EVKTSRNELNS 671
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039730358 718 LQKEMELLTKSqyetsARNKQQELRLVAErKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITA 790
Cdd:pfam15921 672 LSEDYEVLKRN-----FRNKSEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
327-623 |
4.01e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 4.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 327 KLQTKVKQLEAQLHTfaetmlqkdhLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRD 406
Cdd:TIGR02168 681 ELEEKIEELEEKIAE----------LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 407 AALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLAS---HSKMQGALEKVQIELGRRDSEIAGLK 483
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 484 KERSLNQQRVQKLEAEVDQWQARMLIVEAQHGS-----------------EIEPLQKSLDITREDNRKLAMSLEQALQTN 546
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEEleelieeleseleallnERASLEEALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 547 GHLQSKLDHLQEKLESKERERQSLEA----FKEQVAEESKVEAELHAERIEalrkqfqtERETAKKASQREVSELKKALD 622
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVridnLQERLSEEYSLTLEEAEALEN--------KIEDDEEEARRRLKRLENKIK 982
|
.
gi 1039730358 623 E 623
Cdd:TIGR02168 983 E 983
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
451-646 |
5.42e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 5.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 451 LENVLASHSKMQGALEKVQ-IELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQhgseieplqkslditR 529
Cdd:COG4913 254 LEPIRELAERYAAARERLAeLEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR---------------L 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 530 EDNRKLAMSLEQALQTNG-----HLQSKLDHLQEKLESKERERQSLEAFKEQVaeesKVEAELHAERIEALRKQFQTERE 604
Cdd:COG4913 319 DALREELDELEAQIRGNGgdrleQLEREIERLERELEERERRRARLEALLAAL----GLPLPASAEEFAALRAEAAALLE 394
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039730358 605 TAKkasqREVSELKKALDEAnfrSVEVSRANRELRHKATELE 646
Cdd:COG4913 395 ALE----EELEALEEALAEA---EAALRDLRRELRELEAEIA 429
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
469-788 |
5.65e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 5.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 469 QIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGH 548
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 549 LQSKLDHLQEKLESKERERQSLEAFKEqvAEESKVEAELHAERIEALRKQFQTERETaKKASQREVSELKKALDEANFRS 628
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAAKKK--AEEAKKAAEAAKAEAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKA 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 629 VEVSRANrELRHKATELEK----VVNSNKEKLKNQRAQIKLHLSAKANNAQNM--ERMKQIEMELRQMEIIKDQYQKKNY 702
Cdd:PTZ00121 1388 EEKKKAD-EAKKKAEEDKKkadeLKKAAAAKKKADEAKKKAEEKKKADEAKKKaeEAKKADEAKKKAEEAKKAEEAKKKA 1466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 703 EQSLSIQRFVSEMNTLQKEMELLTKSQyetSARNKQQELRLVAERKMRLELENRCKELE--ETIRHLKRCKEATENKLKE 780
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKKAE---EAKKKADEAKKAAEAKKKADEAKKAEEAKkaDEAKKAEEAKKADEAKKAE 1543
|
....*...
gi 1039730358 781 ASVESEQI 788
Cdd:PTZ00121 1544 EKKKADEL 1551
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
160-795 |
5.67e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 5.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 160 LDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKR---------TVVQKEL--LESTIARLQGELKASL 228
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikdlgeeeqLRVKEKIgeLEAEIASLERSIAEKE 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 229 QEKKSLLEKNEWFQREVNKTEKEVAkekcNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLE-HHKATSDYQGKV 307
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIE----ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDkEFAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 308 EKALEKITDSKNMLAYEKGKLQTKVKQLEAQLhtfaetmlqkdhlhklnkalevkyTQANSELSASKAYLEQTEAHLKEM 387
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEEL------------------------ADLNAAIAGIEAKINELEEEKEDK 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 388 KSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEK 467
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGT 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 468 VQiELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHG-------SEIEPLQKSLDITRED--------- 531
Cdd:TIGR02169 527 VA-QLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGratflplNKMRDERRDLSILSEDgvigfavdl 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 532 ---NRKLAMSLEQALQTNG---HLQSKLDHLQE----KLESKERERQSL-------EAFKEQVAEESKVEAELHAERIEA 594
Cdd:TIGR02169 606 vefDPKYEPAFKYVFGDTLvveDIEAARRLMGKyrmvTLEGELFEKSGAmtggsraPRGGILFSRSEPAELQRLRERLEG 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 595 LRKQfqteretaKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNA 674
Cdd:TIGR02169 686 LKRE--------LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 675 QNMERMKQiEMELRQMEIIKDQYQKKNYEQSLS---IQRFVSEMNTLQKEM----------------ELLTKSQYETSAR 735
Cdd:TIGR02169 758 SELKELEA-RIEELEEDLHKLEEALNDLEARLShsrIPEIQAELSKLEEEVsriearlreieqklnrLTLEKEYLEKEIQ 836
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730358 736 NKQQELRLVAERKMRL-------------------ELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEA 795
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIekeienlngkkeeleeeleELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
92-647 |
1.30e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 92 LKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNllldaAHASITGEL 171
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-----DIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 172 QAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEwfqrevnkTEKE 251
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE--------ELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 252 VAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEhhKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTK 331
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE--EALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 332 VKQLEAQLHTFAETMLQKDHLH-KLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALK 410
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLeELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 411 ESQKLKGDLKALEDRES-KKVGNFQKQLAEAkedncKVTIMLENVLASHSKMQGALEKVQIELGRRdsEIAGLKKERSLN 489
Cdd:COG1196 542 AALAAALQNIVVEDDEVaAAAIEYLKAAKAG-----RATFLPLDKIRARAALAAALARGAIGAAVD--LVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 490 QQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQS 569
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 570 LEAFKEQVAEESKVEAELHAERI-EALRKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRE-LRHKATELEK 647
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLeEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEeLERELERLER 774
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
16-776 |
2.62e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 16 RQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQISLKK---EHEENIY- 91
Cdd:pfam15921 109 RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKmmlSHEGVLQe 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 92 LKSEILSLQDVSGKAQVLNDQLSKKC--SELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNLLldaahasitg 169
Cdd:pfam15921 189 IRSILVDFEEASGKKIYEHDSMSTMHfrSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKI---------- 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 170 ELQAVQNekaqlQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQGELKaslqekksllEKNEWFQREVNKTE 249
Cdd:pfam15921 259 ELLLQQH-----QDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQAR----------NQNSMYMRQLSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 250 KEVAKekcnLEKELAESKedinvlnqnlqtlmeenKHLTNKMASLEHHKATSDYQgkvekaLEKITDSKNMLAYEKGKLQ 329
Cdd:pfam15921 324 STVSQ----LRSELREAK-----------------RMYEDKIEELEKQLVLANSE------LTEARTERDQFSQESGNLD 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 330 TKVKQLEAQLHTF-AETMLQKDHLHKL---NKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCR 405
Cdd:pfam15921 377 DQLQKLLADLHKReKELSLEKEQNKRLwdrDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGK 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 406 DAALKESQKLKGDLKALEDRESKKVgnfqkqlaeakEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKE 485
Cdd:pfam15921 457 NESLEKVSSLTAQLESTKEMLRKVV-----------EELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSR 525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 486 RSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPlQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKER 565
Cdd:pfam15921 526 VDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEK-DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRL 604
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 566 ERQSLEAFKE----QVAEESKVEAELHAERIEALRKQFQTERETAKKASQRE--VSELKKALDEANFRSVEVSRANRELR 639
Cdd:pfam15921 605 ELQEFKILKDkkdaKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDqlLNEVKTSRNELNSLSEDYEVLKRNFR 684
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 640 HKATELEKVVNSNKEKLKNQRAQiklhLSAKANNAQNMERMKQIEMELrQMEIIKDQYQKKNYEQSLS--IQRFVSEMNT 717
Cdd:pfam15921 685 NKSEEMETTTNKLKMQLKSAQSE----LEQTRNTLKSMEGSDGHAMKV-AMGMQKQITAKRGQIDALQskIQFLEEAMTN 759
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730358 718 LQKEMELLTKSQYETSarnkqQELRLVAERKMRLelenrCKELEETIRHLKRCKEATEN 776
Cdd:pfam15921 760 ANKEKHFLKEEKNKLS-----QELSTVATEKNKM-----AGELEVLRSQERRLKEKVAN 808
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
197-787 |
3.52e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 3.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 197 QKSQEAEKRTVVQK--ELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLN 274
Cdd:PTZ00121 1176 KKAEAARKAEEVRKaeELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR 1255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 275 QNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETmlQKDHLHK 354
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE--AKKKADA 1333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 355 LNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAvkcRDAALKESQKLKGDLKALEDRESKKVGNFQ 434
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA---DAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 435 KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAglKKERSLNQQRVQKLEAEvdqwQARMLIVEAQH 514
Cdd:PTZ00121 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA--KKAEEAKKKAEEAKKAD----EAKKKAEEAKK 1484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 515 GSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAEL------- 587
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaeekk 1564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 588 ---HAERIEALRKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKvvnsnKEKLKNQRAQIk 664
Cdd:PTZ00121 1565 kaeEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK-----AEEEKKKVEQL- 1638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 665 lhlsaKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYEtsaRNKQQELRLV 744
Cdd:PTZ00121 1639 -----KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE---AKKAEELKKK 1710
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1039730358 745 AERKMRLELENRCKELEETIR--HLKRCKEATENKLKEASVESEQ 787
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKaeEAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
247-794 |
4.08e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 4.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 247 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHK----ATSDYQGKVEKALEKITDSKNMLA 322
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKeeieELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 323 YEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEvKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAV 402
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 403 KCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGL 482
Cdd:PRK03918 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 483 KKE---------------RSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQK---SLDITREDNRKLaMSLEQALQ 544
Cdd:PRK03918 425 KKAieelkkakgkcpvcgRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKelrELEKVLKKESEL-IKLKELAE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 545 TNGHLQSKLD-HLQEKLESKERERQSL-EAFKEQVAEESKVEAELhaERIEALRKQfQTERETAKKASQREVSELKKALD 622
Cdd:PRK03918 504 QLKELEEKLKkYNLEELEKKAEEYEKLkEKLIKLKGEIKSLKKEL--EKLEELKKK-LAELEKKLDELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 623 EANFRSV-EVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKN 701
Cdd:PRK03918 581 ELGFESVeELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 702 YEQ-SLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELEN------RCKELEETIRHLKrcKEAT 774
Cdd:PRK03918 661 YEElREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKlekaleRVEELREKVKKYK--ALLK 738
|
570 580
....*....|....*....|
gi 1039730358 775 ENKLKEASVESEQITANLEE 794
Cdd:PRK03918 739 ERALSKVGEIASEIFEELTE 758
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
247-761 |
6.14e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 6.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 247 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEEnkhLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKG 326
Cdd:PRK02224 199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARET---RDEADEVLEEHEERREELETLEAEIEDLRETIAETERERE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 327 KLQTKVKQLEAQLHTfaetmlqkdhlhklnkaLEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRD 406
Cdd:PRK02224 276 ELAEEVRDLRERLEE-----------------LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 407 AALKESQKLKGDLKALEDRESKK---VGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLK 483
Cdd:PRK02224 339 AHNEEAESLREDADDLEERAEELreeAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 484 KERSLNQQRVQKLEAEVDQwqARMLIVEAQH----------GSEIE--PLQKSLDITREDNRKLAMSLEQALQTNGHLQS 551
Cdd:PRK02224 419 EERDELREREAELEATLRT--ARERVEEAEAlleagkcpecGQPVEgsPHVETIEEDRERVEELEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 552 KLDHLqEKLESKERERQSLEAFKEQVAE---ESKVEAELHAERIEALRKQ-------FQTERETAKKASQR------EVS 615
Cdd:PRK02224 497 RLERA-EDLVEAEDRIERLEERREDLEEliaERRETIEEKRERAEELRERaaeleaeAEEKREAAAEAEEEaeeareEVA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 616 ELKKALDEANFRsVEVSRANRELRHKATELEKVVNSNKEKLKNQRA---QIKLHLSAKAnnaqnmERMKQIEMELRQMEI 692
Cdd:PRK02224 576 ELNSKLAELKER-IESLERIRTLLAAIADAEDEIERLREKREALAElndERRERLAEKR------ERKRELEAEFDEARI 648
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730358 693 IKDQYQKKNYEQSLS-----IQRFVSEMNTLQKEMelltksqyeTSARNKQQELRLVAERkmRLELENRCKELE 761
Cdd:PRK02224 649 EEAREDKERAEEYLEqveekLDELREERDDLQAEI---------GAVENELEELEELRER--REALENRVEALE 711
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
184-703 |
1.08e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 184 HLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQgELKASLQEKKSLLEKNEWFQREVNKTEKEVA---KEKCNLE 260
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREIN-EISSELPELREELEKLEKEVKELEELKEEIEeleKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 261 KELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLH 340
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 341 TFAETMLQKDHLHKLNKALEVKYTQANS---ELSASKAYLEQTEAHLKEMKSI-LGKNEEELAQAVKCRDAALKESQKLK 416
Cdd:PRK03918 332 ELEEKEERLEELKKKLKELEKRLEELEErheLYEEAKAKKEELERLKKRLTGLtPEKLEKELEELEKAKEEIEEEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 417 GDLKALEDRESKKVGNFQK-QLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERS------LN 489
Cdd:PRK03918 412 ARIGELKKEIKELKKAIEElKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRelekvlKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 490 QQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLA---MSLEQALQTNGHLQSKLDHLQEKLESKERE 566
Cdd:PRK03918 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKgeiKSLKKELEKLEELKKKLAELEKKLDELEEE 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 567 RQSLEAFKEQVAEESKVEAELHAERIEALRKQFqTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELE 646
Cdd:PRK03918 572 LAELLKELEELGFESVEELEERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039730358 647 KV-VNSNKEKLKNQRAQI----KLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYE 703
Cdd:PRK03918 651 ELeKKYSEEEYEELREEYlelsRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
489-676 |
1.35e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 489 NQQRVQKLEAEVDQWQARMLIVEAQhGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGhLQSKLDHLQEKLESKERERQ 568
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEER-LEALEAELDALQERREALQRLAEYSWDEIDVAS-AEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 569 SLEAFKEQVAEESKVEAELHAERIEALRKQFQTEREtaKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKV 648
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKE--LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAV 763
|
170 180
....*....|....*....|....*...
gi 1039730358 649 VNSNKEKLKNQRAQiklhLSAKANNAQN 676
Cdd:COG4913 764 ERELRENLEERIDA----LRARLNRAEE 787
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
119-794 |
2.46e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 119 ELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHL--ILEHNQCL 196
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLtqKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 197 QKSQEAEKRTVVQKELLESTIARLQ----------------GELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLE 260
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEetqerinrarkaaplaAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 261 KELaeSKEDINVLNQNLQTLMEENKHLTNKMASLEHH--KATSDYQG--KVEKALEKITDSKNMLAYEKGKLQTKVKQLE 336
Cdd:TIGR00618 336 QQS--SIEEQRRLLQTLHSQEIHIRDAHEVATSIREIscQQHTLTQHihTLQQQKTTLTQKLQSLCKELDILQREQATID 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 337 AQLHTFAETMLQKDHLHKLNKA-------LEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAAL 409
Cdd:TIGR00618 414 TRTSAFRDLQGQLAHAKKQQELqqryaelCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 410 KESQKLKGDLKALEDRESKKvgNFQKQLAEAKEDNCKVTIMLENvlaSHSKMQGALEKVQIELGRRDSEIAGLKKERSLN 489
Cdd:TIGR00618 494 ARLLELQEEPCPLCGSCIHP--NPARQDIDNPGPLTRRMQRGEQ---TYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 490 QQRVQKLEAEVDQWQARMLIVEaQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQS 569
Cdd:TIGR00618 569 QQSFSILTQCDNRSKEDIPNLQ-NITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTA 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 570 LEAFKEQVAEEskvEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDeanfrsvevsranrELRHKATELEKVV 649
Cdd:TIGR00618 648 LHALQLTLTQE---RVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE--------------MLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 650 NSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELrqMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQ 729
Cdd:TIGR00618 711 THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL--MHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQ 788
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730358 730 YETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEE 794
Cdd:TIGR00618 789 FFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
154-691 |
1.50e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 154 QEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRtvvQKELLESTIARLQGELKASLQEKKS 233
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 234 LLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQN-------LQTLMEENKHLTNKMASLEHHKatSDYQGK 306
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAlaeaeaaLRDLRRELRELEAEIASLERRK--SNIPAR 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 307 VEKALEKITDSknmLAYEKGKLQ-----TKVKQLEAQ--------LHTFAETML-QKDHLHKLNKALE------------ 360
Cdd:COG4913 442 LLALRDALAEA---LGLDEAELPfvgelIEVRPEEERwrgaiervLGGFALTLLvPPEHYAAALRWVNrlhlrgrlvyer 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 361 VKYTQANSELSASKA--YLEQTEAHLKEMKSILgknEEELAQ---AVKCRDA-ALKESQ---------KLKGDLKALEDR 425
Cdd:COG4913 519 VRTGLPDPERPRLDPdsLAGKLDFKPHPFRAWL---EAELGRrfdYVCVDSPeELRRHPraitragqvKGNGTRHEKDDR 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 426 ES------------KKVGNFQKQLAEAKEDnckvtimlenvLASHSKMQGALEKVQIELGRRDSEIAGLkKERSLNQQRV 493
Cdd:COG4913 596 RRirsryvlgfdnrAKLAALEAELAELEEE-----------LAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDV 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 494 QKLEAEVDQWQARMLIVEAQHgSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAF 573
Cdd:COG4913 664 ASAEREIAELEAELERLDASS-DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 574 KEQVAE---ESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDEAN----FRSVEVSRANRELRHKATELE 646
Cdd:COG4913 743 ARLELRallEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYLALLD 822
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1039730358 647 KVVNSN----KEKLKNQRA----QIKLHLSAKANNAQNM--ERMKQIEMELRQME 691
Cdd:COG4913 823 RLEEDGlpeyEERFKELLNensiEFVADLLSKLRRAIREikERIDPLNDSLKRIP 877
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
220-415 |
1.86e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.89 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 220 LQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKmaslehhka 299
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEK--------- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 300 tsdyQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQK----DHLHKLNKALEVKYTQANSELSASKA 375
Cdd:pfam07888 103 ----YKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERetelERMKERAKKAGAQRKEEEAERKQLQA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1039730358 376 YLEQTEAHL----KEMKSILGKNEEELAQAVKCRDAALKESQKL 415
Cdd:pfam07888 179 KLQQTEEELrslsKEFQELRNSLAQRDTQVLQLQDTITTLTQKL 222
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
491-796 |
2.25e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 2.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 491 QRVQKLEAEVDQWQARMLIVEAQHgSEIEPLQKSLditREDNRKLAMSLEQALQTNGHLQSKLDHLQEKL-ESKERERQS 569
Cdd:pfam12128 234 AGIMKIRPEFTKLQQEFNTLESAE-LRLSHLHFGY---KSDETLIASRQEERQETSAELNQLLRTLDDQWkEKRDELNGE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 570 LEAFKEQVAEeskveAELHAERIEALRKQFQTERETAKKASQR-------EVSELKKALDEANFRSVEVSRANRELRHKA 642
Cdd:pfam12128 310 LSAADAAVAK-----DRSELEALEDQHGAFLDADIETAAADQEqlpswqsELENLEERLKALTGKHQDVTAKYNRRRSKI 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 643 TE-LEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQrfvseMNTLQKE 721
Cdd:pfam12128 385 KEqNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLR-----LNQATAT 459
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039730358 722 MELLTksqyetsarnkQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATEN---KLKEASVESEQITANLEEAH 796
Cdd:pfam12128 460 PELLL-----------QLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQaseALRQASRRLEERQSALDELE 526
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
462-725 |
2.55e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 462 QGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLiveaQHGSEIEPLQKSLDITREDNRKLAMSLEQ 541
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY----ALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 542 ALQTNGHLQSKLDHLQEKLESKERERQSL----EAFKEQVAEESKVEAELHaERIEALRKQFQTERetakkasqREVSEL 617
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELkeelESLEAELEELEAELEELE-SRLEELEEQLETLR--------SKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 618 KKALDEANfrsVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEME--LRQMEIIKD 695
Cdd:TIGR02168 392 ELQIASLN---NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELErlEEALEELRE 468
|
250 260 270
....*....|....*....|....*....|
gi 1039730358 696 QYQKKNYEqslsIQRFVSEMNTLQKEMELL 725
Cdd:TIGR02168 469 ELEEAEQA----LDAAERELAQLQARLDSL 494
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
266-630 |
5.07e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.74 E-value: 5.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 266 SKEDINVLNQNLQTLMEENKHLTNKMA---SLEHHKATS---DYQGKVEKALEKITDSKNmlayekgKLQTKVKQLEA-- 337
Cdd:PLN02939 54 IAPKQRSSNSKLQSNTDENGQLENTSLrtvMELPQKSTSsddDHNRASMQRDEAIAAIDN-------EQQTNSKDGEQls 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 338 --QLHTFAEtMLQ--KDHLHKLNKALEVKYTQANSELSASKAYleQTEAHLKEMKsiLGKNEEELAQAVKCR-DAALKES 412
Cdd:PLN02939 127 dfQLEDLVG-MIQnaEKNILLLNQARLQALEDLEKILTEKEAL--QGKINILEMR--LSETDARIKLAAQEKiHVEILEE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 413 Q--KLKGDLKALEDRESKKVGNFQKQLAEAKEDNckvtIMLENVLAshskmqgALEKVQIELGRRDSEIAGLKKERSLNQ 490
Cdd:PLN02939 202 QleKLRNELLIRGATEGLCVHSLSKELDVLKEEN----MLLKDDIQ-------FLKAELIEVAETEERVFKLEKERSLLD 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 491 QRVQKLE-----AEVDQWQARMLIVEAQHgSEIEPLQKSLDITREDNRKLAMSLEQalqtNGHLQSKLDHLQEKLEsker 565
Cdd:PLN02939 271 ASLRELEskfivAQEDVSKLSPLQYDCWW-EKVENLQDLLDRATNQVEKAALVLDQ----NQDLRDKVDKLEASLK---- 341
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039730358 566 erqsleafKEQVAEESKVEAELHAERIEALRKQFQT---ERETAKKASQREVSE----LKKALDEANFRSVE 630
Cdd:PLN02939 342 --------EANVSKFSSYKVELLQQKLKLLEERLQAsdhEIHSYIQLYQESIKEfqdtLSKLKEESKKRSLE 405
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
209-500 |
6.15e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 6.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 209 QKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKcnleKELAESKEDINVLNQNLQTLMEENKHLT 288
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK----ERLEELEEDLSSLEQEIENVKSELKELE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 289 NKMASLEHHKAtsdyqgKVEKALEKITDSKNMlayekGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANS 368
Cdd:TIGR02169 765 ARIEELEEDLH------KLEEALNDLEARLSH-----SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 369 ELSASKAYLEQTEAHLKEMKS---ILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNC 445
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIEKeieNLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1039730358 446 KVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLnQQRVQKLEAEV 500
Cdd:TIGR02169 914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV-QAELQRVEEEI 967
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
457-787 |
2.04e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 457 SHSKMQGALEKVQIELGRRDseiaglKKERSLNQQRVQKLEAEVDQWQA---RMLIVEAQHGSEIEPLQKSLDITREDNR 533
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQE------KEEKAREVERRRKLEEAEKARQAemdRQAAIYAEQERMAMERERELERIRQEER 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 534 KLAMSL--EQALQTNGHLQSKLDHLQ-EKLESKERERQSLEAfkeqvAEESKVEAELHAERIEALRKQFQTERETAKKAS 610
Cdd:pfam17380 359 KRELERirQEEIAMEISRMRELERLQmERQQKNERVRQELEA-----ARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 611 QREVSELKKAldeanfRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQiEMELRQM 690
Cdd:pfam17380 434 QREVRRLEEE------RAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK-ELEERKQ 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 691 EIIKDQYQKKnyeqslsiqrfvsemnTLQKEMELLTKSQYETSARNKQQELRlvaerkmrleleNRCKELEETIRHLKRC 770
Cdd:pfam17380 507 AMIEEERKRK----------------LLEKEMEERQKAIYEEERRREAEEER------------RKQQEMEERRRIQEQM 558
|
330
....*....|....*..
gi 1039730358 771 KEATENKLKEASVESEQ 787
Cdd:pfam17380 559 RKATEERSRLEAMERER 575
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
471-780 |
2.29e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 471 ELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSeiepLQKSLDITREDNRKLAMSLEQalqtnghLQ 550
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEE-------LE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 551 SKLDHLQEKLESKERERQSLEAFKEQVaEESKVEAELHAERIEA-LRKQFQTERETAKKASQREVSELKKALDEANFRSV 629
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEEL-EEDLHKLEEALNDLEArLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 630 EVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLhlsAKANNAQNMERMKQIEMELRQMEiikdqyqkknyeqslsiq 709
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN---LNGKKEELEEELEELEAALRDLE------------------ 881
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039730358 710 rfvSEMNTLQKEMELLtKSQYEtSARNKQQELRLVAERKmrlelENRCKELEETIrhlkrckEATENKLKE 780
Cdd:TIGR02169 882 ---SRLGDLKKERDEL-EAQLR-ELERKIEELEAQIEKK-----RKRLSELKAKL-------EALEEELSE 935
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
655-830 |
4.12e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 655 KLKNQRAQIKLHLSAKANNAQNmERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSA 734
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELR-EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 735 R---------------------NKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEA---SVESEQITA 790
Cdd:TIGR02168 296 EisrleqqkqilrerlanlerqLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELeaeLEELESRLE 375
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039730358 791 NLEEAHRWFKCRFDGL--QLELTKNRLQRLPREDRWLEENQD 830
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLelQIASLNNEIERLEARLERLEDRRE 417
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
354-634 |
5.38e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 5.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 354 KLNKALeVKYTQANSELSASKAylEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRES--KKVG 431
Cdd:PRK05771 54 KLSEAL-DKLRSYLPKLNPLRE--EKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIErlEPWG 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 432 NFqkqlaeakednckvTIMLENVLASHSkmqgalekVQIELGRRDSEIAGLKKERSlnQQRVQKLEAEVDQWQARMLIVE 511
Cdd:PRK05771 131 NF--------------DLDLSLLLGFKY--------VSVFVGTVPEDKLEELKLES--DVENVEYISTDKGYVYVVVVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 512 AQHGSEIEPLQKSLDITREDnrklamsleqaLQTNGHLQSKLDHLQEKLESKERERQS----LEAFKEQVAEESKVEAEL 587
Cdd:PRK05771 187 KELSDEVEEELKKLGFERLE-----------LEEEGTPSELIREIKEELEEIEKERESlleeLKELAKKYLEELLALYEY 255
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1039730358 588 ---HAERIEALRKQFQTERETAKKA--SQREVSELKKALDEANFRSVEVSRA 634
Cdd:PRK05771 256 leiELERAEALSKFLKTDKTFAIEGwvPEDRVKKLKELIDKATGGSAYVEFV 307
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
258-617 |
5.96e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 5.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 258 NLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEH-HKATSDYQGKVEKAlekitdsknMLAYEKGK-----LQTK 331
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQdYQAASDHLNLVQTA---------LRQQEKIEryqadLEEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 332 VKQLEAQLHTFAETMLQKDhlhklnkALEVKYTQANSELSASKAYL---------EQTEA--------HLKEMKSILGKN 394
Cdd:PRK04863 361 EERLEEQNEVVEEADEQQE-------ENEARAEAAEEEVDELKSQLadyqqaldvQQTRAiqyqqavqALERAKQLCGLP 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 395 EEELAQAVKCRDAALKESQKLKGDLKALEDRESKKvGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQ--GALEKVQIEL 472
Cdd:PRK04863 434 DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA-QAAHSQFEQAYQLVRKIAGEVSRSEAWDVAREllRRLREQRHLA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 473 GRRDSEIAGLK--KERSLNQQRVQKLEAEVDQWQARMLIVEA---QHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNG 547
Cdd:PRK04863 513 EQLQQLRMRLSelEQRLRQQQRAERLLAEFCKRLGKNLDDEDeleQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 548 --------------HLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKvEAELHAERIEALRKQFQTEREtakKASQRE 613
Cdd:PRK04863 593 ariqrlaarapawlAAQDALARLREQSGEEFEDSQDVTEYMQQLLERER-ELTVERDELAARKQALDEEIE---RLSQPG 668
|
....
gi 1039730358 614 VSEL 617
Cdd:PRK04863 669 GSED 672
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
196-414 |
6.22e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 6.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 196 LQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVLNQ 275
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAE----AEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730358 276 NLQtlmeENKHLTNKMASLEHHKATSDYQGKVEkALEKITDSKNMLAYEKGKLQTKVKQLEAQLhtfaetMLQKDHLHKL 355
Cdd:COG3883 94 ALY----RSGGSVSYLDVLLGSESFSDFLDRLS-ALSKIADADADLLEELKADKAELEAKKAEL------EAKLAELEAL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730358 356 NKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQK 414
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
549-624 |
9.85e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 39.55 E-value: 9.85e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730358 549 LQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAEL---HAERIEALRKQFQTERETAKKASQREVSELKKALDEA 624
Cdd:PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLaaeLEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQA 225
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