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Conserved domains on  [gi|1034595410|ref|XP_016878986|]
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ubiquitin carboxyl-terminal hydrolase 31 isoform X1 [Homo sapiens]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 13432448)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
333-500 3.95e-62

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 210.99  E-value: 3.95e-62
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  333 CTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHV 412
Cdd:cd02674     84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  413 VKRSQsswslpshwspwrrpyglgrdPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQ 492
Cdd:cd02674    164 DTRSF---------------------TGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSS 222

                   ....*...
gi 1034595410  493 TAYILFYQ 500
Cdd:cd02674    223 SAYILFYE 230
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
11-503 1.65e-55

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 207.81  E-value: 1.65e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410   11 CSTFVQeLFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGkcSHCMRIGVAVPLSGTVARLREAV 90
Cdd:COG5560    411 DSIITD-LFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPES--GRRQPLKIELDASSTIRGLKKLV 487
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410   91 S-METKIPTDQIVLTEMYYDGFHRSFCDTDD--LETVHESDCIFAFETPEifrpEGIlsqrgihlnnnlnhlkfgldyhr 167
Cdd:COG5560    488 DaEYGKLGCFEIKVMCIYYGGNYNMLEPADKvlLQDIPQTDFVYLYETND----NGI----------------------- 540
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  168 lssptqtaakqgkmdsptsragsdkIVLLVCNRACTGQQGKR-FGLPFvLHLEKTIA---WDLLQKEILEKMKYFLRPTV 243
Cdd:COG5560    541 -------------------------EVPVVHLRIEKGYKSKRlFGDPF-LQLNVLIKasiYDKLVKEFEELLVLVEMKKT 594
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  244 CIQVCPFSLRVVSV-VGITYLLPQE---EQPLCHPIVERALKScgpggtAHVKLVV--EWDKETRDFLFvntedeyipDA 317
Cdd:COG5560    595 DVDLVSEQVRLLREeSSPSSWLKLEteiDTKREEQVEEEGQMN------FNDAVVIscEWEEKRYLSLF---------SY 659
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  318 ESVRLQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQN 397
Cdd:COG5560    660 DPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDD 739
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  398 MVKFPLTGLDMTPHVVkrsqsswslpshwspwrrPYglgrDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFD 477
Cdd:COG5560    740 LVEYPIDDLDLSGVEY------------------MV----DDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFD 797
                          490       500
                   ....*....|....*....|....*.
gi 1034595410  478 DSDVQQLSEDEVCTQTAYILFYQRRT 503
Cdd:COG5560    798 DSRITEVDPEDSVTSSAYVLFYRRKS 823
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
738-946 1.93e-03

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 1.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  738 SPVKEVKAPSHPGSLAKKPESTTKRSPSSKGTSEPEKSLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSkadSS 817
Cdd:PHA03307   210 SSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGP---AS 286
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  818 SRGSGRHSSPAPAqpkkESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPAtrsPFPPGKSRTSDHSLSREGSR 897
Cdd:PHA03307   287 SSSSPRERSPSPS----PSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGA---AVSPGPSPSRSPSPSRPPPP 359
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1034595410  898 QSLGSDRASATSTSKPNSPRVSQARaGEGRGAGKHVRSSSMASLRSPST 946
Cdd:PHA03307   360 ADPSSPRKRPRPSRAPSSPAASAGR-PTRRRARAAVAGRARRRDATGRF 407
 
Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
333-500 3.95e-62

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 210.99  E-value: 3.95e-62
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  333 CTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHV 412
Cdd:cd02674     84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  413 VKRSQsswslpshwspwrrpyglgrdPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQ 492
Cdd:cd02674    164 DTRSF---------------------TGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSS 222

                   ....*...
gi 1034595410  493 TAYILFYQ 500
Cdd:cd02674    223 SAYILFYE 230
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
11-503 1.65e-55

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 207.81  E-value: 1.65e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410   11 CSTFVQeLFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGkcSHCMRIGVAVPLSGTVARLREAV 90
Cdd:COG5560    411 DSIITD-LFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPES--GRRQPLKIELDASSTIRGLKKLV 487
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410   91 S-METKIPTDQIVLTEMYYDGFHRSFCDTDD--LETVHESDCIFAFETPEifrpEGIlsqrgihlnnnlnhlkfgldyhr 167
Cdd:COG5560    488 DaEYGKLGCFEIKVMCIYYGGNYNMLEPADKvlLQDIPQTDFVYLYETND----NGI----------------------- 540
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  168 lssptqtaakqgkmdsptsragsdkIVLLVCNRACTGQQGKR-FGLPFvLHLEKTIA---WDLLQKEILEKMKYFLRPTV 243
Cdd:COG5560    541 -------------------------EVPVVHLRIEKGYKSKRlFGDPF-LQLNVLIKasiYDKLVKEFEELLVLVEMKKT 594
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  244 CIQVCPFSLRVVSV-VGITYLLPQE---EQPLCHPIVERALKScgpggtAHVKLVV--EWDKETRDFLFvntedeyipDA 317
Cdd:COG5560    595 DVDLVSEQVRLLREeSSPSSWLKLEteiDTKREEQVEEEGQMN------FNDAVVIscEWEEKRYLSLF---------SY 659
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  318 ESVRLQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQN 397
Cdd:COG5560    660 DPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDD 739
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  398 MVKFPLTGLDMTPHVVkrsqsswslpshwspwrrPYglgrDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFD 477
Cdd:COG5560    740 LVEYPIDDLDLSGVEY------------------MV----DDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFD 797
                          490       500
                   ....*....|....*....|....*.
gi 1034595410  478 DSDVQQLSEDEVCTQTAYILFYQRRT 503
Cdd:COG5560    798 DSRITEVDPEDSVTSSAYVLFYRRKS 823
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
314-499 1.78e-41

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 154.91  E-value: 1.78e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  314 IPDAESVRLQRERHHQpqtctlsQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 393
Cdd:pfam00443  150 LPIPGDSAELKTASLQ-------ICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWE 222
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  394 KLQNMVKFPLTgLDMTPHVVKRSQSswslpshwspwrrpyglgRDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLW 473
Cdd:pfam00443  223 KLNTEVEFPLE-LDLSRYLAEELKP------------------KTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRW 283
                          170       180
                   ....*....|....*....|....*..
gi 1034595410  474 YCFDDSDVQQLSED-EVCTQTAYILFY 499
Cdd:pfam00443  284 YKFDDEKVTEVDEEtAVLSSSAYILFY 310
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
359-501 2.48e-17

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 83.70  E-value: 2.48e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  359 CKQLQQGSITlslwTLPDVLIIHLKRFRQEGDRRmKLQNMVKFPLtglDMTphvVKRSQSSWSLPSHwspwrrpyglgrd 438
Cdd:COG5533    168 AKQEYEVSFV----KLPKILTIQLKRFANLGGNQ-KIDTEVDEKF---ELP---VKHDQILNIVKET------------- 223
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034595410  439 pedyIYDLYAVCNHHGTMQGGHYTAYCKnsVDGLWYCFDDSDVQQLSEDEVCT---QTAYILFYQR 501
Cdd:COG5533    224 ----YYDLVGFVLHQGSLEGGHYIAYVK--KGGKWEKANDSDVTPVSEEEAINekaKNAYLYFYER 283
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
14-72 1.39e-13

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 71.55  E-value: 1.39e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1034595410   14 FVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTvvyqgkCSHCMR 72
Cdd:cd02674     39 IIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVT------LEDCLR 91
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
15-50 1.90e-04

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 44.74  E-value: 1.90e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1034595410   15 VQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIP 50
Cdd:pfam00443  118 ITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIP 153
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
738-946 1.93e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 1.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  738 SPVKEVKAPSHPGSLAKKPESTTKRSPSSKGTSEPEKSLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSkadSS 817
Cdd:PHA03307   210 SSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGP---AS 286
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  818 SRGSGRHSSPAPAqpkkESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPAtrsPFPPGKSRTSDHSLSREGSR 897
Cdd:PHA03307   287 SSSSPRERSPSPS----PSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGA---AVSPGPSPSRSPSPSRPPPP 359
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1034595410  898 QSLGSDRASATSTSKPNSPRVSQARaGEGRGAGKHVRSSSMASLRSPST 946
Cdd:PHA03307   360 ADPSSPRKRPRPSRAPSSPAASAGR-PTRRRARAAVAGRARRRDATGRF 407
 
Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
333-500 3.95e-62

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 210.99  E-value: 3.95e-62
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  333 CTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHV 412
Cdd:cd02674     84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  413 VKRSQsswslpshwspwrrpyglgrdPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQ 492
Cdd:cd02674    164 DTRSF---------------------TGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSS 222

                   ....*...
gi 1034595410  493 TAYILFYQ 500
Cdd:cd02674    223 SAYILFYE 230
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
11-503 1.65e-55

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 207.81  E-value: 1.65e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410   11 CSTFVQeLFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGkcSHCMRIGVAVPLSGTVARLREAV 90
Cdd:COG5560    411 DSIITD-LFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPES--GRRQPLKIELDASSTIRGLKKLV 487
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410   91 S-METKIPTDQIVLTEMYYDGFHRSFCDTDD--LETVHESDCIFAFETPEifrpEGIlsqrgihlnnnlnhlkfgldyhr 167
Cdd:COG5560    488 DaEYGKLGCFEIKVMCIYYGGNYNMLEPADKvlLQDIPQTDFVYLYETND----NGI----------------------- 540
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  168 lssptqtaakqgkmdsptsragsdkIVLLVCNRACTGQQGKR-FGLPFvLHLEKTIA---WDLLQKEILEKMKYFLRPTV 243
Cdd:COG5560    541 -------------------------EVPVVHLRIEKGYKSKRlFGDPF-LQLNVLIKasiYDKLVKEFEELLVLVEMKKT 594
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  244 CIQVCPFSLRVVSV-VGITYLLPQE---EQPLCHPIVERALKScgpggtAHVKLVV--EWDKETRDFLFvntedeyipDA 317
Cdd:COG5560    595 DVDLVSEQVRLLREeSSPSSWLKLEteiDTKREEQVEEEGQMN------FNDAVVIscEWEEKRYLSLF---------SY 659
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  318 ESVRLQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQN 397
Cdd:COG5560    660 DPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDD 739
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  398 MVKFPLTGLDMTPHVVkrsqsswslpshwspwrrPYglgrDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFD 477
Cdd:COG5560    740 LVEYPIDDLDLSGVEY------------------MV----DDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFD 797
                          490       500
                   ....*....|....*....|....*.
gi 1034595410  478 DSDVQQLSEDEVCTQTAYILFYQRRT 503
Cdd:COG5560    798 DSRITEVDPEDSVTSSAYVLFYRRKS 823
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
332-500 1.23e-41

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 153.41  E-value: 1.23e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  332 TCTLSQCFQLYTKEERLAPDDAWRCPHCKqLQQGSITLSLWTLPDVLIIHLKRFRQEGD-RRMKLQNMVKFPLTgLDMTP 410
Cdd:cd02257     98 QVSLEDCLEKFFKEEILEGDNCYKCEKKK-KQEATKRLKIKKLPPVLIIHLKRFSFNEDgTKEKLNTKVSFPLE-LDLSP 175
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  411 HVVKRSQSSWSlpshwspwrrpyglgrDPEDYIYDLYAVCNHHGT-MQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEV 489
Cdd:cd02257    176 YLSEGEKDSDS----------------DNGSYKYELVAVVVHSGTsADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEV 239
                          170
                   ....*....|....*.
gi 1034595410  490 -----CTQTAYILFYQ 500
Cdd:cd02257    240 lefgsLSSSAYILFYE 255
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
314-499 1.78e-41

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 154.91  E-value: 1.78e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  314 IPDAESVRLQRERHHQpqtctlsQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 393
Cdd:pfam00443  150 LPIPGDSAELKTASLQ-------ICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWE 222
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  394 KLQNMVKFPLTgLDMTPHVVKRSQSswslpshwspwrrpyglgRDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLW 473
Cdd:pfam00443  223 KLNTEVEFPLE-LDLSRYLAEELKP------------------KTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRW 283
                          170       180
                   ....*....|....*....|....*..
gi 1034595410  474 YCFDDSDVQQLSED-EVCTQTAYILFY 499
Cdd:pfam00443  284 YKFDDEKVTEVDEEtAVLSSSAYILFY 310
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
328-499 2.87e-37

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 143.28  E-value: 2.87e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  328 HQPQTCTLSQCFQLYTKEERLApDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQE-GDRRMKLQNMVKFPLTgL 406
Cdd:cd02660    171 GVSGTPTLSDCLDRFTRPEKLG-DFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSlNKTSRKIDTYVQFPLE-L 248
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  407 DMTPHVVKRSQSSWSLPShwspwrrpyglgrDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSvDGLWYCFDDSDVQQLSE 486
Cdd:cd02660    249 NMTPYTSSSIGDTQDSNS-------------LDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG-DGQWFKFDDAMITRVSE 314
                          170
                   ....*....|...
gi 1034595410  487 DEVCTQTAYILFY 499
Cdd:cd02660    315 EEVLKSQAYLLFY 327
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
334-499 3.77e-33

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 130.47  E-value: 3.77e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  334 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFrqEGDRRMKLQNMVKFPLTgLDMTPHVV 413
Cdd:cd02661    163 SLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRF--SNFRGGKINKQISFPET-LDLSPYMS 239
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  414 KRSQSSwslpshwspwrrpyglgrdpedYIYDLYAVCNHHGTMQ-GGHYTAYCKNSvDGLWYCFDDSDVQQLSEDEVCTQ 492
Cdd:cd02661    240 QPNDGP----------------------LKYKLYAVLVHSGFSPhSGHYYCYVKSS-NGKWYNMDDSKVSPVSIETVLSQ 296

                   ....*..
gi 1034595410  493 TAYILFY 499
Cdd:cd02661    297 KAYILFY 303
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
339-501 9.55e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 109.65  E-value: 9.55e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  339 FQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFR--QEGDRRMKLQNMVKFPLTgLDMTPHVVKrs 416
Cdd:cd02659    157 LDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEfdFETMMRIKINDRFEFPLE-LDMEPYTEK-- 233
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  417 qsswslpshwSPWRRPYGLGRDP-EDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEV------ 489
Cdd:cd02659    234 ----------GLAKKEGDSEKKDsESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAeeecfg 303
                          170       180
                   ....*....|....*....|....*...
gi 1034595410  490 CTQT----------------AYILFYQR 501
Cdd:cd02659    304 GEETqktydsgprafkrttnAYMLFYER 331
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
333-500 1.43e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 104.78  E-value: 1.43e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  333 CTLSQCFQLYTKEERLAPDDAWRCPHCkqlQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM-KLQNMVKFPLTgLDMTPH 411
Cdd:cd02667    111 CSIESCLKQFTEVEILEGNNKFACENC---TKAKKQYLISKLPPVLVIHLKRFQQPRSANLrKVSRHVSFPEI-LDLAPF 186
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  412 VVKRSQSSwslpshwspwrrpyglgRDPEDYIYDLYAVCNHHGTMQGGHYTAYCK---------------------NSVD 470
Cdd:cd02667    187 CDPKCNSS-----------------EDKSSVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrlsdltkskpaadeaGPGS 249
                          170       180       190
                   ....*....|....*....|....*....|
gi 1034595410  471 GLWYCFDDSDVQQLSEDEVCTQTAYILFYQ 500
Cdd:cd02667    250 GQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
334-499 3.02e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 95.95  E-value: 3.02e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  334 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRF---RQEGDRRmKLQNMVKFPLTgLDMTp 410
Cdd:cd02668    157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFvfdRKTGAKK-KLNASISFPEI-LDMG- 233
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  411 hvvkrsqsswslpshwspwrrPYGLGRDPEDYIYDLYAVCNHHGT-MQGGHYTAYCKNSVDGLWYCFDDSDVQQL----- 484
Cdd:cd02668    234 ---------------------EYLAESDEGSYVYELSGVLIHQGVsAYSGHYIAHIKDEQTGEWYKFNDEDVEEMpgkpl 292
                          170       180       190
                   ....*....|....*....|....*....|.
gi 1034595410  485 ----SEDE------------VCTQTAYILFY 499
Cdd:cd02668    293 klgnSEDPakprkseikkgtHSSRTAYMLVY 323
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
330-500 1.57e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 90.45  E-value: 1.57e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  330 PQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGD--RRMKLQNMVKFPLTgld 407
Cdd:cd02663    144 EQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQlnRYIKLFYRVVFPLE--- 220
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  408 mtphvvkrsqsswslpshwspwRRPYGLGRDPE--DYIYDLYAVCNHHGtmQG---GHYTAYCKnsVDGLWYCFDD---- 478
Cdd:cd02663    221 ----------------------LRLFNTTDDAEnpDRLYELVAVVVHIG--GGpnhGHYVSIVK--SHGGWLLFDDetve 274
                          170       180
                   ....*....|....*....|....*.
gi 1034595410  479 ----SDVQQLSEDEVCTQTAYILFYQ 500
Cdd:cd02663    275 kideNAVEEFFGDSPNQATAYVLFYQ 300
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
359-501 2.48e-17

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 83.70  E-value: 2.48e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  359 CKQLQQGSITlslwTLPDVLIIHLKRFRQEGDRRmKLQNMVKFPLtglDMTphvVKRSQSSWSLPSHwspwrrpyglgrd 438
Cdd:COG5533    168 AKQEYEVSFV----KLPKILTIQLKRFANLGGNQ-KIDTEVDEKF---ELP---VKHDQILNIVKET------------- 223
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034595410  439 pedyIYDLYAVCNHHGTMQGGHYTAYCKnsVDGLWYCFDDSDVQQLSEDEVCT---QTAYILFYQR 501
Cdd:COG5533    224 ----YYDLVGFVLHQGSLEGGHYIAYVK--KGGKWEKANDSDVTPVSEEEAINekaKNAYLYFYER 283
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
310-499 5.59e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 77.63  E-value: 5.59e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  310 EDEYIPDAESVRLQRERhhQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEG 389
Cdd:cd02671    159 ESELSKSEESSEISPDP--KTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANG 236
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  390 DRRMKLQNMVKF--PLtgldMTPHVvkrsqsswsLPSHwspwrrpyGLGRDPEDYIYDLYAVCNHHG-TMQGGHYTAYCK 466
Cdd:cd02671    237 SEFDCYGGLSKVntPL----LTPLK---------LSLE--------EWSTKPKNDVYRLFAVVMHSGaTISSGHYTAYVR 295
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1034595410  467 nsvdglWYCFDDSDVQQLSEDEV---------CTQTAYILFY 499
Cdd:cd02671    296 ------WLLFDDSEVKVTEEKDFlealspntsSTSTPYLLFY 331
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
334-489 1.21e-14

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 79.14  E-value: 1.21e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  334 TLSQCFQLYTKEERLAPDDAWRCP-HCKQLQQGSITLSlwTLPDVLIIHLKRFRQEGDRRM--KLQNMVKFPLTgLDMTP 410
Cdd:COG5077    339 NLQESFRRYIQVETLDGDNRYNAEkHGLQDAKKGVIFE--SLPPVLHLQLKRFEYDFERDMmvKINDRYEFPLE-IDLLP 415
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  411 HV---VKRSQSSwslpshwspwrrpyglgrdpeDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSED 487
Cdd:COG5077    416 FLdrdADKSENS---------------------DAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEK 474

                   ..
gi 1034595410  488 EV 489
Cdd:COG5077    475 EV 476
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
316-500 2.15e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 75.61  E-value: 2.15e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  316 DAESVRLQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFR--QEGDRRM 393
Cdd:cd02664    117 NSTSARTERFRDLDLSFPSVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSydQKTHVRE 196
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  394 KLQNMVKFPltgLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDpEDYIYDLYAVCNHHGT-MQGGHYTAYCKNSVD-- 470
Cdd:cd02664    197 KIMDNVSIN---EVLSLPVRVESKSSESPLEKKEEESGDDGELVT-RQVHYRLYAVVVHSGYsSESGHYFTYARDQTDad 272
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1034595410  471 ------------------GLWYCFDDSDVQQLSEDEV-------CTQTAYILFYQ 500
Cdd:cd02664    273 stgqecpepkdaeendesKNWYLFNDSRVTFSSFESVqnvtsrfPKDTPYILFYE 327
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
14-72 1.39e-13

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 71.55  E-value: 1.39e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1034595410   14 FVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTvvyqgkCSHCMR 72
Cdd:cd02674     39 IIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVT------LEDCLR 91
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
286-500 6.15e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 65.04  E-value: 6.15e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  286 GGTAHVKLVVEWDketrDFLFVNTEDEYIPDAESVRLQRERHHqpqtctLSQCFQLYTKEERLapDDawRCPHCKQLQQG 365
Cdd:cd02658    141 LSCKKVKYTSELS----EILSLPVPKDEATEKEEGELVYEPVP------LEDCLKAYFAPETI--ED--FCSTCKEKTTA 206
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  366 SITLSLWTLPDVLIIHLKRFR-QEGDRRMKLQNMVKFPltglDMtphvvkrsqsswslpshwspwrrpyglgRDPEDYiy 444
Cdd:cd02658    207 TKTTGFKTFPDYLVINMKRFQlLENWVPKKLDVPIDVP----EE----------------------------LGPGKY-- 252
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1034595410  445 DLYAVCNHHGT-MQGGHYTAYCKNSVD--GLWYCFDDSDVQQLSEDEVCTQTAYILFYQ 500
Cdd:cd02658    253 ELIAFISHKGTsVHSGHYVAHIKKEIDgeGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
327-500 1.57e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 62.77  E-value: 1.57e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  327 HHQPQTCTLSQCFQLYTKEERLapDDAwRCPHCKQLqqgsitlsLWTLPDVLIIHLKRFrqEGDRRM---KLQNMVKFPL 403
Cdd:cd02662     90 QSSGSGTTLEHCLDDFLSTEII--DDY-KCDRCQTV--------IVRLPQILCIHLSRS--VFDGRGtstKNSCKVSFPE 156
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  404 TgldmtphvvkrsqsswsLPshwspwrrpyglgrdpeDYIYDLYAVCNHHGTMQGGHYTAY------------------- 464
Cdd:cd02662    157 R-----------------LP-----------------KVLYRLRAVVVHYGSHSSGHYVCYrrkplfskdkepgsfvrmr 202
                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1034595410  465 -CKNSVDGLWYCFDDSDVQQLSEDEVCTQT-AYILFYQ 500
Cdd:cd02662    203 eGPSSTSHPWWRISDTTVKEVSESEVLEQKsAYMLFYE 240
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
374-499 1.12e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 60.81  E-value: 1.12e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  374 LPDVLIIHLKRF--RQEGDRRMKLQNMVKFPLTgLDMTPHVvkrSQSSwslpshwspwrrpyglgrdpedyIYDLYAVCN 451
Cdd:cd02657    196 LPKYLTVQFVRFfwKRDIQKKAKILRKVKFPFE-LDLYELC---TPSG-----------------------YYELVAVIT 248
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034595410  452 HHG-TMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCT-------QTAYILFY 499
Cdd:cd02657    249 HQGrSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKlsgggdwHIAYILLY 304
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
357-500 8.42e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 52.71  E-value: 8.42e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  357 PHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHVVKRSQSSwSLPSHwspwrrpyglg 436
Cdd:cd02669    315 KTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSL-NLSTK----------- 382
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034595410  437 rdpedyiYDLYAVCNHHGTMQG-GHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQ 500
Cdd:cd02669    383 -------YNLVANIVHEGTPQEdGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
11-55 1.10e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 51.99  E-value: 1.10e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1034595410   11 CSTFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTR 55
Cdd:cd02660    119 CNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTP 163
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
374-500 1.81e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 47.52  E-value: 1.81e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  374 LPDVLIIHLKRFRQEGDRRMKLQNMVkFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDL-YAVCNH 452
Cdd:cd02670     98 APSCLIICLKRYGKTEGKAQKMFKKI-LIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLcSAVCHR 176
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034595410  453 HGTMQGGHYTAYCKNSVDGL-----------WYCFDDSD----VQQLS--EDEVCTQTAYILFYQ 500
Cdd:cd02670    177 GTSLETGHYVAFVRYGSYSLtetdneaynaqWVFFDDMAdrdgVSNGFniPAARLLEDPYMLFYQ 241
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
12-50 5.49e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 46.50  E-value: 5.49e-05
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1034595410   12 STFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIP 50
Cdd:cd02661    121 TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIK 159
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
15-50 1.90e-04

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 44.74  E-value: 1.90e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1034595410   15 VQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIP 50
Cdd:pfam00443  118 ITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIP 153
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
738-946 1.93e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 1.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  738 SPVKEVKAPSHPGSLAKKPESTTKRSPSSKGTSEPEKSLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSkadSS 817
Cdd:PHA03307   210 SSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGP---AS 286
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  818 SRGSGRHSSPAPAqpkkESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPAtrsPFPPGKSRTSDHSLSREGSR 897
Cdd:PHA03307   287 SSSSPRERSPSPS----PSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGA---AVSPGPSPSRSPSPSRPPPP 359
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1034595410  898 QSLGSDRASATSTSKPNSPRVSQARaGEGRGAGKHVRSSSMASLRSPST 946
Cdd:PHA03307   360 ADPSSPRKRPRPSRAPSSPAASAGR-PTRRRARAAVAGRARRRDATGRF 407
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
617-917 3.82e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.31  E-value: 3.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  617 PSRFSGDSPIHSSASTLEKIGEAADDKVSiscFGSLRNLSSSYQEPSDSHSRREHKAVGRAPLAVMEGvfkdesDTRRLN 696
Cdd:PHA03307   140 PVGSPGPPPAASPPAAGASPAAVASDAAS---SRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASP------RPPRRS 210
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  697 SSVVDTQSKHSAQGDRLPPLSGPFDNNNQIAYVDQSdsVDSSPVKEVKAPSHPGSLAKKPE---STTKRSPSSKGTSEPE 773
Cdd:PHA03307   211 SPISASASSPAPAPGRSAADDAGASSSDSSSSESSG--CGWGPENECPLPRPAPITLPTRIweaSGWNGPSSRPGPASSS 288
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595410  774 KSLRKGRPAlASQESSLSSTSPSSPLPVKvSLKPSRSRSKADSSSRGSGRHSSPAPAQPKKESSPKSQD--SVSSPSPQK 851
Cdd:PHA03307   289 SSPRERSPS-PSPSSPGSGPAPSSPRASS-SSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRppPPADPSSPR 366
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034595410  852 QKSASALTYTASSTSAKKASGPATRSPfPPGKSRTSDHSLSREGSRQSLGSDRASATSTSKPNSPR 917
Cdd:PHA03307   367 KRPRPSRAPSSPAASAGRPTRRRARAA-VAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYP 431
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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