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Conserved domains on  [gi|1034632288|ref|XP_016861560|]
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inactive N-acetylated-alpha-linked acidic dipeptidase-like protein 2 isoform X3 [Homo sapiens]

Protein Classification

M28_PMSA_TfR_like and TFR_dimer domain-containing protein( domain architecture ID 11978079)

protein containing domains PA, M28_PMSA_TfR_like, and TFR_dimer

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PA super family cl28883
PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction ...
241-393 6.20e-85

PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2.


The actual alignment was detected with superfamily member cd02131:

Pssm-ID: 333703  Cd Length: 153  Bit Score: 266.03  E-value: 6.20e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 241 DLLYSYAAYSAKGTLKAEVIDVSYGMADDLKRIRKIKNVTNQIALLKLGKLPLLYKLSSLEKAGFGGVLLYIDPCDLPKT 320
Cdd:cd02131     1 DLLYSYAAYSAKGTLQAEVVDVQYGSVEDLRRIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKT 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034632288 321 VNPSHDTFMVSLNPGGDPSTPGYPSVDESFRQSRSNLTSLLVQPISAPLVAKLISSPKARTKNEACSSLELPN 393
Cdd:cd02131    81 RHTWHQAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPPSRRKEGSCVPLALPS 153
M28_PMSA_TfR_like cd03874
M28 Zn-peptidase Transferrin Receptor-like family; Peptidase M28 family; Transferrin Receptor ...
410-631 1.26e-80

M28 Zn-peptidase Transferrin Receptor-like family; Peptidase M28 family; Transferrin Receptor (TfR) and prostate-specific membrane antigen (PSMA, also called glutamate carboxypeptidase or GCP-II) subfamily. TfR and PSMA are homodimeric type II transmembrane proteins containing three distinct domains: protease-like, apical or protease-associated (PA) and helical domains. The protease-like domain is a large extracellular portion (ectodomain). In TfR, it contains a binding site for the transferrin molecule and has 28% identity to membrane glutamate carboxypeptidase II (mGCP-II or PSMA). The PA domain is inserted between the first and second strands of the central beta sheet in the protease-like domain. TfR1 is widely expressed, and is a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and the complex is then internalized. TfR1 may also participate in cell growth and proliferation. TfR2 binds Tf but with a significantly lower affinity than TfR1. It is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis; in humans, mutations in TfR2 are associated with a form of hemochromatosis (HFE3). PSMA is over-expressed predominantly in prostate cancer (PCa) as well as in the neovasculature of most solid tumors, but not in the vasculature of normal tissues. PSMA is considered a biomarker for PCa and possibly for use as an imaging and therapeutic target. The extracellular domain of PSMA possesses two unique enzymatic functions: N-acetylated, alpha-linked acidic dipeptidase (NAALADase) which cleaves terminal glutamate from the neurodipeptide N-acetyl-aspartyl-glutamate (NAAG), and folate hydrolase (FOLH) which cleaves the terminal glutamates from gamma-linked polyglutamates (carboxypeptidase). A mutation in this gene may be associated with impaired intestinal absorption of dietary folates, resulting in low blood folate levels and consequent hyperhomocysteinemia. Expression of this protein in the brain may be involved in a number of pathological conditions associated with glutamate excitotoxicity. This gene likely arose from a duplication event of a nearby chromosomal region. Alternative splicing gives rise to multiple transcript variants. While related in sequence to peptidase M28 GCP-II, TfR lacks the metal ion coordination centers and protease activity.


:

Pssm-ID: 349871 [Multi-domain]  Cd Length: 278  Bit Score: 259.54  E-value: 1.26e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 410 KTVTNVVGFVMGLTSPDRYIIVGSHHHTAHsYNGQEWASSTAIITAFIRALMSKVKR-GWRPDRTIVFCSWGGTAFGNIG 488
Cdd:cd03874    55 SPITNVVGKIEGIEQPDRAIIIGAHRDSWG-YGAGYPNSGTAVLLEIARLFQQLKKKfGWKPLRTIYFISWDGSEFGLAG 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 489 SYEWGEDFKKVLQKNVVAYISLHSPIRGNSSLYPVASPSLQQLVVEKNNFNCTRRAQ-----CPETNISSIQIQGDADYF 563
Cdd:cd03874   134 STELGEDRKASLKDEVYAYINIDQLVIGNSELDVDAHPLLQSLFRKASKKVKFPGNEdwwkhSPNAKVSNLHQYGDWTPF 213
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034632288 564 INHLGVPIVQFAYEDIKtleGPSFLSEARFSTRaTKIEEM-DPSFNLHETITKLSGEVILQIANEPVLP 631
Cdd:cd03874   214 LNHLGIPVAVFSFKNDR---NASYPINSSYDTF-EWLEKFlDPDFELHSTLAEFVGLLVLSLAEDPLLP 278
TFR_dimer pfam04253
Transferrin receptor-like dimerization domain; This domain is involved in dimerization of the ...
651-764 3.40e-06

Transferrin receptor-like dimerization domain; This domain is involved in dimerization of the transferrin receptor as shown in its crystal structure.


:

Pssm-ID: 461238  Cd Length: 116  Bit Score: 46.42  E-value: 3.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 651 NTHQLLAMALRLRESAELFQSDEMRpANDPKERAPIRIRMLNDILQDMEKSFLVKQAPPG--FYRNILY----HLDEKTS 724
Cdd:pfam04253   2 SLEPLRKAIEKFKKAAKEFDAWAKK-WEDIKEPDLLAVRAVNDKLMLFERAFLDPEGLPGrpWFKHVVFapglWTGYAGA 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1034632288 725 RF-----SILIEAWehckplasnETLQEALSEVLNSINSAQVYFK 764
Cdd:pfam04253  81 TFpgirdAIEAGDW---------ELAQKQISIVAKAIQSAAETLK 116
 
Name Accession Description Interval E-value
PA_hNAALADL2_like cd02131
PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated ...
241-393 6.20e-85

PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239046  Cd Length: 153  Bit Score: 266.03  E-value: 6.20e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 241 DLLYSYAAYSAKGTLKAEVIDVSYGMADDLKRIRKIKNVTNQIALLKLGKLPLLYKLSSLEKAGFGGVLLYIDPCDLPKT 320
Cdd:cd02131     1 DLLYSYAAYSAKGTLQAEVVDVQYGSVEDLRRIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKT 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034632288 321 VNPSHDTFMVSLNPGGDPSTPGYPSVDESFRQSRSNLTSLLVQPISAPLVAKLISSPKARTKNEACSSLELPN 393
Cdd:cd02131    81 RHTWHQAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPPSRRKEGSCVPLALPS 153
M28_PMSA_TfR_like cd03874
M28 Zn-peptidase Transferrin Receptor-like family; Peptidase M28 family; Transferrin Receptor ...
410-631 1.26e-80

M28 Zn-peptidase Transferrin Receptor-like family; Peptidase M28 family; Transferrin Receptor (TfR) and prostate-specific membrane antigen (PSMA, also called glutamate carboxypeptidase or GCP-II) subfamily. TfR and PSMA are homodimeric type II transmembrane proteins containing three distinct domains: protease-like, apical or protease-associated (PA) and helical domains. The protease-like domain is a large extracellular portion (ectodomain). In TfR, it contains a binding site for the transferrin molecule and has 28% identity to membrane glutamate carboxypeptidase II (mGCP-II or PSMA). The PA domain is inserted between the first and second strands of the central beta sheet in the protease-like domain. TfR1 is widely expressed, and is a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and the complex is then internalized. TfR1 may also participate in cell growth and proliferation. TfR2 binds Tf but with a significantly lower affinity than TfR1. It is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis; in humans, mutations in TfR2 are associated with a form of hemochromatosis (HFE3). PSMA is over-expressed predominantly in prostate cancer (PCa) as well as in the neovasculature of most solid tumors, but not in the vasculature of normal tissues. PSMA is considered a biomarker for PCa and possibly for use as an imaging and therapeutic target. The extracellular domain of PSMA possesses two unique enzymatic functions: N-acetylated, alpha-linked acidic dipeptidase (NAALADase) which cleaves terminal glutamate from the neurodipeptide N-acetyl-aspartyl-glutamate (NAAG), and folate hydrolase (FOLH) which cleaves the terminal glutamates from gamma-linked polyglutamates (carboxypeptidase). A mutation in this gene may be associated with impaired intestinal absorption of dietary folates, resulting in low blood folate levels and consequent hyperhomocysteinemia. Expression of this protein in the brain may be involved in a number of pathological conditions associated with glutamate excitotoxicity. This gene likely arose from a duplication event of a nearby chromosomal region. Alternative splicing gives rise to multiple transcript variants. While related in sequence to peptidase M28 GCP-II, TfR lacks the metal ion coordination centers and protease activity.


Pssm-ID: 349871 [Multi-domain]  Cd Length: 278  Bit Score: 259.54  E-value: 1.26e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 410 KTVTNVVGFVMGLTSPDRYIIVGSHHHTAHsYNGQEWASSTAIITAFIRALMSKVKR-GWRPDRTIVFCSWGGTAFGNIG 488
Cdd:cd03874    55 SPITNVVGKIEGIEQPDRAIIIGAHRDSWG-YGAGYPNSGTAVLLEIARLFQQLKKKfGWKPLRTIYFISWDGSEFGLAG 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 489 SYEWGEDFKKVLQKNVVAYISLHSPIRGNSSLYPVASPSLQQLVVEKNNFNCTRRAQ-----CPETNISSIQIQGDADYF 563
Cdd:cd03874   134 STELGEDRKASLKDEVYAYINIDQLVIGNSELDVDAHPLLQSLFRKASKKVKFPGNEdwwkhSPNAKVSNLHQYGDWTPF 213
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034632288 564 INHLGVPIVQFAYEDIKtleGPSFLSEARFSTRaTKIEEM-DPSFNLHETITKLSGEVILQIANEPVLP 631
Cdd:cd03874   214 LNHLGIPVAVFSFKNDR---NASYPINSSYDTF-EWLEKFlDPDFELHSTLAEFVGLLVLSLAEDPLLP 278
Iap COG2234
Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein ...
395-578 5.74e-15

Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein turnover, chaperones, Amino acid transport and metabolism];


Pssm-ID: 441835 [Multi-domain]  Cd Length: 257  Bit Score: 75.55  E-value: 5.74e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 395 EIRVVSMQVQTVTKLKTVTNVVGFVMGLTSPDRYIIVGSHH-HTAHSYNGqewA----SSTAIITAFIRALMskvKRGWR 469
Cdd:COG2234    29 LALLKLKGLLLEAAGGDSRNVIAEIPGTDPPDEVVVLGAHYdSVGSIGPG---AddnaSGVAALLELARALA---ALGPK 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 470 PDRTIVFCSWGGTAFGNIGSYEWGEDFkKVLQKNVVAYISLHSPIRGNSSLY-----PVASPSLQQLvVEKNNFNCTRRA 544
Cdd:COG2234   103 PKRTIRFVAFGAEEQGLLGSRYYAENL-KAPLEKIVAVLNLDMIGRGGPRNYlyvdgDGGSPELADL-LEAAAKAYLPGL 180
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1034632288 545 QCPETNISSIQIQGDADYFINHlGVPIVQFAYED 578
Cdd:COG2234   181 GVDPPEETGGYGRSDHAPFAKA-GIPALFLFTGA 213
Peptidase_M28 pfam04389
Peptidase family M28;
414-578 8.19e-08

Peptidase family M28;


Pssm-ID: 461288 [Multi-domain]  Cd Length: 192  Bit Score: 53.06  E-value: 8.19e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 414 NVVGFVMGlTSPDRYIIVGSHH-HTAHSY----NgqewASSTAIITAFIRALmskvKRGWRPDRTIVFCSWGGTAFGNIG 488
Cdd:pfam04389   1 NVIAKLPG-KAPDEVVLLSAHYdSVGTGPgaddN----ASGVAALLELARVL----AAGQRPKRSVRFLFFDAEEAGLLG 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 489 SYEWGEdfKKVLQKNVVAYISLHSPIRGNSSLYPVASP----SLQQLVVEKNNFNCTRRAQCPETNISsiqIQGDADYFI 564
Cdd:pfam04389  72 SHHFAK--SHPPLKKIRAVINLDMIGSGGPALLFQSGPkgssLLEKYLKAAAKPYGVTLAEDPFQERG---GPGRSDHAP 146
                         170
                  ....*....|....*
gi 1034632288 565 -NHLGVPIVQFAYED 578
Cdd:pfam04389 147 fIKAGIPGLDLAFTD 161
TFR_dimer pfam04253
Transferrin receptor-like dimerization domain; This domain is involved in dimerization of the ...
651-764 3.40e-06

Transferrin receptor-like dimerization domain; This domain is involved in dimerization of the transferrin receptor as shown in its crystal structure.


Pssm-ID: 461238  Cd Length: 116  Bit Score: 46.42  E-value: 3.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 651 NTHQLLAMALRLRESAELFQSDEMRpANDPKERAPIRIRMLNDILQDMEKSFLVKQAPPG--FYRNILY----HLDEKTS 724
Cdd:pfam04253   2 SLEPLRKAIEKFKKAAKEFDAWAKK-WEDIKEPDLLAVRAVNDKLMLFERAFLDPEGLPGrpWFKHVVFapglWTGYAGA 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1034632288 725 RF-----SILIEAWehckplasnETLQEALSEVLNSINSAQVYFK 764
Cdd:pfam04253  81 TFpgirdAIEAGDW---------ELAQKQISIVAKAIQSAAETLK 116
 
Name Accession Description Interval E-value
PA_hNAALADL2_like cd02131
PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated ...
241-393 6.20e-85

PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239046  Cd Length: 153  Bit Score: 266.03  E-value: 6.20e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 241 DLLYSYAAYSAKGTLKAEVIDVSYGMADDLKRIRKIKNVTNQIALLKLGKLPLLYKLSSLEKAGFGGVLLYIDPCDLPKT 320
Cdd:cd02131     1 DLLYSYAAYSAKGTLQAEVVDVQYGSVEDLRRIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKT 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034632288 321 VNPSHDTFMVSLNPGGDPSTPGYPSVDESFRQSRSNLTSLLVQPISAPLVAKLISSPKARTKNEACSSLELPN 393
Cdd:cd02131    81 RHTWHQAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPPSRRKEGSCVPLALPS 153
M28_PMSA_TfR_like cd03874
M28 Zn-peptidase Transferrin Receptor-like family; Peptidase M28 family; Transferrin Receptor ...
410-631 1.26e-80

M28 Zn-peptidase Transferrin Receptor-like family; Peptidase M28 family; Transferrin Receptor (TfR) and prostate-specific membrane antigen (PSMA, also called glutamate carboxypeptidase or GCP-II) subfamily. TfR and PSMA are homodimeric type II transmembrane proteins containing three distinct domains: protease-like, apical or protease-associated (PA) and helical domains. The protease-like domain is a large extracellular portion (ectodomain). In TfR, it contains a binding site for the transferrin molecule and has 28% identity to membrane glutamate carboxypeptidase II (mGCP-II or PSMA). The PA domain is inserted between the first and second strands of the central beta sheet in the protease-like domain. TfR1 is widely expressed, and is a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and the complex is then internalized. TfR1 may also participate in cell growth and proliferation. TfR2 binds Tf but with a significantly lower affinity than TfR1. It is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis; in humans, mutations in TfR2 are associated with a form of hemochromatosis (HFE3). PSMA is over-expressed predominantly in prostate cancer (PCa) as well as in the neovasculature of most solid tumors, but not in the vasculature of normal tissues. PSMA is considered a biomarker for PCa and possibly for use as an imaging and therapeutic target. The extracellular domain of PSMA possesses two unique enzymatic functions: N-acetylated, alpha-linked acidic dipeptidase (NAALADase) which cleaves terminal glutamate from the neurodipeptide N-acetyl-aspartyl-glutamate (NAAG), and folate hydrolase (FOLH) which cleaves the terminal glutamates from gamma-linked polyglutamates (carboxypeptidase). A mutation in this gene may be associated with impaired intestinal absorption of dietary folates, resulting in low blood folate levels and consequent hyperhomocysteinemia. Expression of this protein in the brain may be involved in a number of pathological conditions associated with glutamate excitotoxicity. This gene likely arose from a duplication event of a nearby chromosomal region. Alternative splicing gives rise to multiple transcript variants. While related in sequence to peptidase M28 GCP-II, TfR lacks the metal ion coordination centers and protease activity.


Pssm-ID: 349871 [Multi-domain]  Cd Length: 278  Bit Score: 259.54  E-value: 1.26e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 410 KTVTNVVGFVMGLTSPDRYIIVGSHHHTAHsYNGQEWASSTAIITAFIRALMSKVKR-GWRPDRTIVFCSWGGTAFGNIG 488
Cdd:cd03874    55 SPITNVVGKIEGIEQPDRAIIIGAHRDSWG-YGAGYPNSGTAVLLEIARLFQQLKKKfGWKPLRTIYFISWDGSEFGLAG 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 489 SYEWGEDFKKVLQKNVVAYISLHSPIRGNSSLYPVASPSLQQLVVEKNNFNCTRRAQ-----CPETNISSIQIQGDADYF 563
Cdd:cd03874   134 STELGEDRKASLKDEVYAYINIDQLVIGNSELDVDAHPLLQSLFRKASKKVKFPGNEdwwkhSPNAKVSNLHQYGDWTPF 213
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034632288 564 INHLGVPIVQFAYEDIKtleGPSFLSEARFSTRaTKIEEM-DPSFNLHETITKLSGEVILQIANEPVLP 631
Cdd:cd03874   214 LNHLGIPVAVFSFKNDR---NASYPINSSYDTF-EWLEKFlDPDFELHSTLAEFVGLLVLSLAEDPLLP 278
M28_PSMA_like cd08022
M28 Zn-peptidase prostate-specific membrane antigen; Peptidase M28 family; prostate-specific ...
411-632 1.93e-43

M28 Zn-peptidase prostate-specific membrane antigen; Peptidase M28 family; prostate-specific membrane antigen (PSMA, also called glutamate carboxypeptidase II or GCP-II)-like subfamily. PSMA is a homodimeric type II transmembrane protein containing three distinct domains: protease-like, apical or protease-associated (PA) and helical domains. The protease-like domain is a large extracellular portion (ectodomain). PSMA is over-expressed predominantly in prostate cancer (PCa) as well as in the neovasculature of most solid tumors, but not in the vasculature of the normal tissues. PSMA is considered a biomarker for PCa and possibly for use as an imaging and therapeutic target. The extracellular domain of PSMA possesses two unique enzymatic functions: N-acetylated, alpha-linked acidic dipeptidase (NAALADase) which cleaves terminal glutamate from the neurodipeptide N-acetyl-aspartyl-glutamate (NAAG), and folate hydrolase (FOLH) which cleaves the terminal glutamates from gamma-linked polyglutamates (carboxypeptidase). A mutation in this gene may be associated with impaired intestinal absorption of dietary folates, resulting in low blood folate levels and consequent hyperhomocysteinemia. Expression of this protein in the brain may be involved in a number of pathological conditions associated with glutamate excitotoxicity. Inhibition of GCP-II has been shown to be effective in preclinical models of neurological disorders associated with excessive activation of glutamatergic systems. This gene likely arose from a duplication event of a nearby chromosomal region. Alternative splicing gives rise to multiple transcript variants.


Pssm-ID: 349942 [Multi-domain]  Cd Length: 287  Bit Score: 158.93  E-value: 1.93e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 411 TVTNVVGFVMGLTSPDRYIIVGSHHhTAHSYNGQEWASSTAIITAFIRALMSKVKRGWRPDRTIVFCSWGGTAFGNIGSY 490
Cdd:cd08022    59 PIWNVIGTIRGSEEPDEYIILGNHR-DAWVFGAGDPNSGTAVLLEVARALGTLLKKGWRPRRTIIFASWDAEEYGLIGST 137
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 491 EWGEDFKKVLQKNVVAYISLHSPIRGnSSLYPVASPSLQQLVveknnFNCTRRAQCPETNISSI-----------QIQG- 558
Cdd:cd08022   138 EWVEENADWLQERAVAYLNVDVAVSG-STLRAAGSPLLQNLL-----REAAKEVQDPDEGATLKylpswwddtggEIGNl 211
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 559 --DADY--FINHLGVPIVQFAYEDIKTLEGP-------SFLSEARFstratkieeMDPSFNLHETITKLSGEVILQIANE 627
Cdd:cd08022   212 gsGSDYtpFLDHLGIASIDFGFSGGPTDPYPhyhsnydSFEWMEKF---------GDPGFKYHVAIAQVWGLLALRLADD 282

                  ....*
gi 1034632288 628 PVLPF 632
Cdd:cd08022   283 PILPF 287
M28_TfR cd09848
M28 Zn-peptidase Transferrin Receptor family; Peptidase M28 family; Transferrin Receptor (TfR) ...
414-633 1.46e-22

M28 Zn-peptidase Transferrin Receptor family; Peptidase M28 family; Transferrin Receptor (TfR) subfamily. TfRs are homodimeric type II transmembrane proteins containing three distinct domains: protease-like, apical or protease-associated (PA), and helical domains. The protease-like domain is a large extracellular portion (ectodomain). In TfR, it contains a binding site for the transferrin molecule and has 28% identity to membrane glutamate carboxypeptidase II (mGCP-II or PSMA). The PA domain is inserted between the first and second strands of the central beta sheet in the protease-like domain. TfR1 is widely expressed, and is a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and the complex is then internalized. TfR1 may also participate in cell growth and proliferation. TfR2 binds Tf but with a significantly lower affinity than TfR1. It is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis; in humans, mutations in TfR2 are associated with a form of hemochromatosis (HFE3). While related in sequence to peptidase M28 glutamate carboxypeptidase II (also called prostate-specific membrane antigen or PSMA), TfR lacks the metal ion coordination centers and protease activity of that group.


Pssm-ID: 349946 [Multi-domain]  Cd Length: 285  Bit Score: 98.60  E-value: 1.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 414 NVVGFVMGLTSPDRYIIVGSHHHT-----AHSYNGqewassTAIITAFIRALMSKVK-RGWRPDRTIVFCSWGGTAFGNI 487
Cdd:cd09848    58 NIFGVIKGFVEPDRYVVIGAQRDAwgpgaAKSGVG------TALLLELARTFSDMVKnDGFKPRRSIVFASWSAGDFGSV 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 488 GSYEWGEDFKKVLQKNVVAYISLHSPIRGNSSLYPVASPSLQQLV----------VEKNNFNCTRRAQCPETNISSIQIQ 557
Cdd:cd09848   132 GATEWLEGYLSSLHLKAFTYISLDGAVLGDDSFKASASPLLYTLIestmkqvkspVHSGQSYYETRSSWWASIVEPLGLD 211
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 558 GDADYFINHLGVPIVQFAYEDiktlegpsflSEARFSTRATKieeMDPSFNLHE-----------TITKLSGEVILQIAN 626
Cdd:cd09848   212 SAAYPFLAFSGIPSVSFHFTE----------DDEDYPFLGTK---EDTKENLDKftngelwevaaAAAEVAGQMALRLVH 278

                  ....*..
gi 1034632288 627 EPVLPFN 633
Cdd:cd09848   279 DHLLPLD 285
Iap COG2234
Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein ...
395-578 5.74e-15

Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein turnover, chaperones, Amino acid transport and metabolism];


Pssm-ID: 441835 [Multi-domain]  Cd Length: 257  Bit Score: 75.55  E-value: 5.74e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 395 EIRVVSMQVQTVTKLKTVTNVVGFVMGLTSPDRYIIVGSHH-HTAHSYNGqewA----SSTAIITAFIRALMskvKRGWR 469
Cdd:COG2234    29 LALLKLKGLLLEAAGGDSRNVIAEIPGTDPPDEVVVLGAHYdSVGSIGPG---AddnaSGVAALLELARALA---ALGPK 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 470 PDRTIVFCSWGGTAFGNIGSYEWGEDFkKVLQKNVVAYISLHSPIRGNSSLY-----PVASPSLQQLvVEKNNFNCTRRA 544
Cdd:COG2234   103 PKRTIRFVAFGAEEQGLLGSRYYAENL-KAPLEKIVAVLNLDMIGRGGPRNYlyvdgDGGSPELADL-LEAAAKAYLPGL 180
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1034632288 545 QCPETNISSIQIQGDADYFINHlGVPIVQFAYED 578
Cdd:COG2234   181 GVDPPEETGGYGRSDHAPFAKA-GIPALFLFTGA 213
PA_TfR cd02128
PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This ...
246-375 2.35e-14

PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membrane; at increased Tf, Tf competes with HFE for binding of TfR1, resulting in HFE disassociating from TfR1 and associating with TfR2 . The TfR1-TfR2 association might initiate a signal cascade leading to the induction of hepcidin (a small peptide hormone that controls systemic iron levels). Human mutations in TfR2 are associated with a form of hemochromatosis (HFE3). The significance of the PA domain to TfRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239043 [Multi-domain]  Cd Length: 183  Bit Score: 72.05  E-value: 2.35e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 246 YAAYSAKGTLKAEVIDVSYGMADDLKRIRKIK-NVTNQIALLKLGKLPLLYKLSSLEKAGFGGVLLYIDPCDLPKTvnPS 324
Cdd:cd02128    20 YVAYSAAGTVTGKLVYANYGRKKDFEDLQSVGvSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPID--PS 97
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1034632288 325 HDTFMVSLNPG-GDPSTPGYPSVDES-FRQSRSN-LTSLLVQPISAPLVAKLIS 375
Cdd:cd02128    98 ETALFGHVHLGtGDPYTPGFPSFNHTqFPPSQSSgLPNIPAQTISAAAAAKLLS 151
PA_GCPII_like cd02121
PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II ...
209-366 9.27e-14

PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower efficiency than does GCPII; NAALADase L is not able to hydrolyze alpha-NAAG. The GCPII PA domain (referred to as the apical domain) participates in substrate binding and may act as a protein-protein interaction domain.


Pssm-ID: 239036  Cd Length: 220  Bit Score: 71.17  E-value: 9.27e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 209 PSPSTVTLSSsgqcfhPNGQPCSE-EARKDSSQDLLYS---YAAYSAKGTLKAEVIDVSYGMADDLKRIRKIK-NVTNQI 283
Cdd:cd02121     1 PVKRSLILTK------PDGATGKLiEDTVLEEPPSPDVvppFHAYSASGNVTAELVYANYGSPEDFEYLEDLGiDVKGKI 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 284 ALLKLGKLPLLYKLSSLEKAGFGGVLLYIDPCD-----------LPKT--VNPSH---DTFMVSLNPGGDPSTPGYPSVD 347
Cdd:cd02121    75 VIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADdgyitgengktYPDGpaRPPSGvqrGSVLFMSIGPGDPLTPGYPSKP 154
                         170       180
                  ....*....|....*....|..
gi 1034632288 348 ESFRQSRS---NLTSLLVQPIS 366
Cdd:cd02121   155 GAERRDKEeskGLPKIPSLPIS 176
M28 cd02690
M28 Zn-peptidases include aminopeptidases and carboxypeptidases; Peptidase M28 family (also ...
413-623 3.50e-12

M28 Zn-peptidases include aminopeptidases and carboxypeptidases; Peptidase M28 family (also called aminopeptidase Y family) contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Plasma glutamate carboxypeptidase (PGCP) and glutamate carboxypeptidase II (NAALADase) hydrolyze dipeptides. Several members of the M28 peptidase family have PA domain inserts which may participate in substrate binding and/or in promoting conformational changes, which influence the stability and accessibility of the site to substrate. These include prostate-specific membrane antigen (PSMA), yeast aminopeptidase S (SGAP), human transferrin receptors (TfR1 and TfR2), plasma glutamate carboxypeptidase (PGCP) and several predicted aminopeptidases where relatively little is known about them. Also included in the M28 family are glutaminyl cyclases (QC), which are involved in N-terminal glutamine cyclization of many endocrine peptides. Nicastrin and nicalin belong to this family but lack the amino-acid conservation required for catalytically active aminopeptidases.


Pssm-ID: 349868 [Multi-domain]  Cd Length: 202  Bit Score: 66.21  E-value: 3.50e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 413 TNVVGFVMGLTSPDRYIIVGSHH-HTAHSYNGQEWASSTAIITAFIRALmSKVKRgwRPDRTIVFCSWGGTAFGNIGSYE 491
Cdd:cd02690     2 YNVIATIKGSDKPDEVILIGAHYdSVPLSPGANDNASGVAVLLELARVL-SKLQL--KPKRSIRFAFWDAEELGLLGSKY 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 492 WGEDFkKVLQKNVVAYISLHSPIRGNSSLY----PVASPSLQQLVVEKNNF--NCTRRAQCPETNISsiqiqGDADYFIN 565
Cdd:cd02690    79 YAEQL-LSSLKNIRAALNLDMIGGAGPDLYlqtaPGNDALVEKLLRALAHEleNVVYTVVYKEDGGT-----GGSDHRPF 152
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1034632288 566 H-LGVPIVQFayediktlegpSFLSEARFSTRATkieEMDPSFNLHETITKLSGEVILQ 623
Cdd:cd02690   153 LaRGIPAASL-----------IQSESYNFPYYHT---TQDTLENIDKDTLKRAGDILAS 197
Peptidase_M28 pfam04389
Peptidase family M28;
414-578 8.19e-08

Peptidase family M28;


Pssm-ID: 461288 [Multi-domain]  Cd Length: 192  Bit Score: 53.06  E-value: 8.19e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 414 NVVGFVMGlTSPDRYIIVGSHH-HTAHSY----NgqewASSTAIITAFIRALmskvKRGWRPDRTIVFCSWGGTAFGNIG 488
Cdd:pfam04389   1 NVIAKLPG-KAPDEVVLLSAHYdSVGTGPgaddN----ASGVAALLELARVL----AAGQRPKRSVRFLFFDAEEAGLLG 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 489 SYEWGEdfKKVLQKNVVAYISLHSPIRGNSSLYPVASP----SLQQLVVEKNNFNCTRRAQCPETNISsiqIQGDADYFI 564
Cdd:pfam04389  72 SHHFAK--SHPPLKKIRAVINLDMIGSGGPALLFQSGPkgssLLEKYLKAAAKPYGVTLAEDPFQERG---GPGRSDHAP 146
                         170
                  ....*....|....*
gi 1034632288 565 -NHLGVPIVQFAYED 578
Cdd:pfam04389 147 fIKAGIPGLDLAFTD 161
TFR_dimer pfam04253
Transferrin receptor-like dimerization domain; This domain is involved in dimerization of the ...
651-764 3.40e-06

Transferrin receptor-like dimerization domain; This domain is involved in dimerization of the transferrin receptor as shown in its crystal structure.


Pssm-ID: 461238  Cd Length: 116  Bit Score: 46.42  E-value: 3.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 651 NTHQLLAMALRLRESAELFQSDEMRpANDPKERAPIRIRMLNDILQDMEKSFLVKQAPPG--FYRNILY----HLDEKTS 724
Cdd:pfam04253   2 SLEPLRKAIEKFKKAAKEFDAWAKK-WEDIKEPDLLAVRAVNDKLMLFERAFLDPEGLPGrpWFKHVVFapglWTGYAGA 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1034632288 725 RF-----SILIEAWehckplasnETLQEALSEVLNSINSAQVYFK 764
Cdd:pfam04253  81 TFpgirdAIEAGDW---------ELAQKQISIVAKAIQSAAETLK 116
M28_like cd03877
M28 Zn-peptidase, many containing a protease-associated (PA) domain insert; Peptidase family ...
414-539 4.23e-05

M28 Zn-peptidase, many containing a protease-associated (PA) domain insert; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Some proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.


Pssm-ID: 349874 [Multi-domain]  Cd Length: 206  Bit Score: 45.31  E-value: 4.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 414 NVVGFVMGLTSPDRYIIVGSH--HHTAHS-------YNG-QEWASSTAIITAFIRALMSKVKrgwrPDRTIVFCSWGGTA 483
Cdd:cd03877     3 NVVGVLEGSDLPDETIVIGAHydHLGIGGgdsgdkiYNGaDDNASGVAAVLELARYFAKQKT----PKRSIVFAAFTAEE 78
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 484 FGNIGSYEWGEDFKKVLqKNVVAYISLH--SPIRGNSSLYPV--ASPSLQQLVVEKNNFN 539
Cdd:cd03877    79 KGLLGSKYFAENPKFPL-DKIVAMLNLDmiGRLGRSKDVYLIgsGSSELENLLKKANKAA 137
M28_like cd08015
M28 Zn-peptidase-like; uncharacterized subfamily; Peptidase family M28 (also called ...
414-562 1.36e-04

M28 Zn-peptidase-like; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.


Pssm-ID: 349937 [Multi-domain]  Cd Length: 218  Bit Score: 44.12  E-value: 1.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 414 NVVGFVMGLTSPDRYIIVGSHHHTAHSYNGqewASSTAIITAFIRALMSKVKR-GWRPDRTIVFCSWGGTAFGNIGSY-- 490
Cdd:cd08015     3 NVIAEIPGSDKKDEVVILGAHLDSWHGATG---ATDNGAGTAVMMEAMRILKAiGSKPKRTIRVALWGSEEQGLHGSRay 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 491 ------EWGEDFKKVLQKNVVAYISLHS---PIR-----GNSSLYPVAS------PSLQQLVVEKNNFNCTRRAQCPETN 550
Cdd:cd08015    80 vekhfgDPPTMQLQRDHKKISAYFNLDNgtgRIRgiylqGNLAAYPIFSawlypfHDLGATTVIERNTGGTDHAAFDAVG 159
                         170
                  ....*....|...
gi 1034632288 551 ISSIQ-IQGDADY 562
Cdd:cd08015   160 IPAFQfIQDPWDY 172
M28_like_PA cd05660
M28 Zn-peptidase containing a protease-associated (PA) domain insert; Peptidase family M28 ...
403-489 3.05e-04

M28 Zn-peptidase containing a protease-associated (PA) domain insert; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.


Pssm-ID: 349910 [Multi-domain]  Cd Length: 290  Bit Score: 43.50  E-value: 3.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034632288 403 VQTVTKLKTVT--NVVGFVMGLTSPDRYIIVGSH--HHTAHS-------YNGQ-EWASSTAIITAFIRALMSKVKrgwRP 470
Cdd:cd05660    48 VPLVSKIEYSTshNVVAILPGSKLPDEYIVLSAHwdHLGIGPpiggdeiYNGAvDNASGVAAVLELARVFAAQDQ---RP 124
                          90
                  ....*....|....*....
gi 1034632288 471 DRTIVFCSWGGTAFGNIGS 489
Cdd:cd05660   125 KRSIVFLAVTAEEKGLLGS 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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