|
Name |
Accession |
Description |
Interval |
E-value |
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1-581 |
0e+00 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 748.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 1 MDLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEE 80
Cdd:pfam05483 186 MDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 81 SRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARA 160
Cdd:pfam05483 266 SRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKA 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 161 AHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENK 240
Cdd:pfam05483 346 AHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 241 QFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELT 320
Cdd:pfam05483 426 QFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELT 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 321 QETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEEN----------- 389
Cdd:pfam05483 506 QEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENarsieyevlkk 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 390 ----------CNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIED 459
Cdd:pfam05483 586 ekqmkilenkCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIED 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 460 KKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLE 539
Cdd:pfam05483 666 KKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALE 745
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 767905786 540 IELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKK 581
Cdd:pfam05483 746 IELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
37-506 |
1.24e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 68.61 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 37 EKIQHLEQEYKKEINDKEKQVSL----LLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKE 112
Cdd:pfam15921 390 EKELSLEKEQNKRLWDRDTGNSItidhLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 113 LEDIKVSLQRSVSTQKALEEDLQIATKTICQLTeekeTQMEESNKARAAHSFVVTEFETTVcsleELLRTEQQRLEKNED 192
Cdd:pfam15921 470 LESTKEMLRKVVEELTAKKMTLESSERTVSDLT----ASLQEKERAIEATNAEITKLRSRV----DLKLQELQHLKNEGD 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 193 QLKiltmelqkksseleemtkltnNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAR----EKEVH 268
Cdd:pfam15921 542 HLR---------------------NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEkaqlEKEIN 600
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 269 DLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERML 348
Cdd:pfam15921 601 DRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLK 680
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 349 KQIENLQE----TETQLRNELEYVREELKQKRDEVKcKLDKSEENCNN----LRKQVENKNKYIEELQQENKALKKKGTA 420
Cdd:pfam15921 681 RNFRNKSEemetTTNKLKMQLKSAQSELEQTRNTLK-SMEGSDGHAMKvamgMQKQITAKRGQIDALQSKIQFLEEAMTN 759
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 421 ESKQLNVYEIKVNKLELELESAKQKFGEITDtyqkEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMV 500
Cdd:pfam15921 760 ANKEKHFLKEEKNKLSQELSTVATEKNKMAG----ELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESV 835
|
....*.
gi 767905786 501 ALMEKH 506
Cdd:pfam15921 836 RLKLQH 841
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
31-571 |
3.14e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.01 E-value: 3.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 31 KLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEkTKLQSENLKQSIEKQHHLT 110
Cdd:PRK03918 176 RRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 111 KELEDIKVSLQRSVSTQKALEEDLQIATKTICQLtEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEkn 190
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 191 edqlkiltmELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKG-TEQELIGLLQAREKEVHD 269
Cdd:PRK03918 332 ---------ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGlTPEKLEKELEELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 270 LEIQLTAITTSEQYYSKEVKDLKTELenEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLK 349
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKAI--EELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 350 QIENLQE---------TETQLRNELEYVREELK----QKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKAL-- 414
Cdd:PRK03918 481 ELRELEKvlkkeseliKLKELAEQLKELEEKLKkynlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLae 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 415 --KKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKiSEENLLEEVEKAKVIADEAVKLQKEIDKRc 492
Cdd:PRK03918 561 leKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKD-AEKELEREEKELKKLEEELDKAFEELAET- 638
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767905786 493 QHKIAEMVALMEKHKHQYDKiiEERDSELGLYKSKEQEQSSLRASLEiELSNLKAELLSVKKQLEIEREEKEKLKREAK 571
Cdd:PRK03918 639 EKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELE-ELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
240-541 |
3.98e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 3.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 240 KQFEKIAEELKGTEQELIGL-LQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKE 318
Cdd:COG1196 213 ERYRELKEELKELEAELLLLkLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 319 LTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELeyvrEELKQKRDEVKCKLDKSEENCNNLRKQVE 398
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 399 NKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQkfgeitdtyqkEIEDKKISEENLLEEVEKAKVIA 478
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE-----------RLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767905786 479 DEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIE 541
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
247-557 |
7.98e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 7.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 247 EELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDM 326
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 327 TLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEV---KCKLDKSEENCNNLRKQVENKNKY 403
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllNEEAANLRERLESLERRIAATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 404 IEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAkqkfgeiTDTYQKEIEDKKISEENLLEEVEKAKVIADEAVK 483
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-------LNERASLEEALALLRSELEELSEELRELESKRSE 912
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767905786 484 LQKEIDkRCQHKIAEMVALMEKHKHQYDKIIEERDSElglYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLE 557
Cdd:TIGR02168 913 LRRELE-ELREKLAQLELRLEGLEVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
44-591 |
2.89e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 2.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 44 QEYKKEIndKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRS 123
Cdd:COG1196 216 RELKEEL--KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 124 VSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETtvcsLEELLRTEQQRLEKNEDQLKILTMELQK 203
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE----LEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 204 KSSELEEmtkltnnkevELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQY 283
Cdd:COG1196 370 AEAELAE----------AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 284 YSKEVKDLKTELENEKLKNTELTshcnKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQET--ETQL 361
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALL----ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 362 RNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAEskqlnvyeikvnklELELES 441
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT--------------FLPLDK 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 442 AKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHK--HQYDKIIEERDS 519
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRevTLEGEGGSAGGS 661
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767905786 520 ELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLE 591
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
8-297 |
4.99e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 4.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 8 EKMITAFEELRVQAENSRLEMHfKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQ 87
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQIS-ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 88 LEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEEsnkaraahsfvvt 167
Cdd:TIGR02168 787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED------------- 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 168 efettVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE-NKQFEKIA 246
Cdd:TIGR02168 854 -----IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEElREKLAQLE 928
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 767905786 247 EELKGTEQELIGLL-QAREKEVHDLEIQLT---AITTSEQYYSKEVKDLKTELEN 297
Cdd:TIGR02168 929 LRLEGLEVRIDNLQeRLSEEYSLTLEEAEAlenKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
6-296 |
7.10e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 7.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 6 NIEKMITAFEELRVQAEnsRLEMHFKLKEDYEKIQHLEQEYK-----KEINDKEKQVSLLLIQITEKENKMKDLTFLLEE 80
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLE--RLRREREKAERYQALLKEKREYEgyellKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 81 SRDKVNQLEEKTKLQSENLKQ-SIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEE---KETQMEESN 156
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEidkLLAEIEELE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 157 KARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEemtKLTNNKEVELEELKKVLGEKETLL 236
Cdd:TIGR02169 343 REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE---KLKREINELKRELDRLQEELQRLS 419
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 237 YENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELE 296
Cdd:TIGR02169 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
31-402 |
9.81e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 9.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 31 KLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLT 110
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 111 KELEDIKvslqrsvSTQKALEEDLQIATKTICQLTEEketqmEESNKARAAHSFV------VTEFETTVCSLEELLRTEQ 184
Cdd:TIGR02169 751 QEIENVK-------SELKELEARIEELEEDLHKLEEA-----LNDLEARLSHSRIpeiqaeLSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 185 QRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETllyenkqfekIAEELKGTEQELIGLLQARE 264
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE----------ELEELEAALRDLESRLGDLK 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 265 KEVHDLEIQLTAIttseqyySKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMtLELKNQQEDINNNKKQE 344
Cdd:TIGR02169 889 KERDELEAQLREL-------ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED-EEIPEEELSLEDVQAEL 960
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 767905786 345 ERMLKQIENLQetETQLRNELEYvrEELKQKRDEVKCKLDKSEENCNNLRKQVENKNK 402
Cdd:TIGR02169 961 QRVEEEIRALE--PVNMLAIQEY--EEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
144-445 |
2.06e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 144 LTEEKETQMEE-SNKARAAHSFVVTEFETTVCSLEELLRteqqRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVEL 222
Cdd:COG1196 194 ILGELERQLEPlERQAEKAERYRELKEELKELEAELLLL----KLRELEAELEELEAELEELEAELEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 223 EELKKVLGEKETLLyenkqfekiaEELKGTEQELI-------GLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTEL 295
Cdd:COG1196 270 EELRLELEELELEL----------EEAQAEEYELLaelarleQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 296 ENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYV---REEL 372
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALlerLERL 419
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767905786 373 KQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQK 445
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
260-580 |
2.21e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 2.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 260 LQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELEneklknteltshcnklslenkELTQETSDMTLELKNQQEDINN 339
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELE---------------------ELEEELEQLRKELEELSRQISA 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 340 NKKQEERMLKQIENLQETETQLRNELeyvrEELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGT 419
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKEL----TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 420 AESKQLNVYEIKVNKLELELESakqkfgeitdtYQKEIEDKKISEENLleeVEKAKVIADEAVKLQKEIDKrCQHKIAEM 499
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLES-----------LERRIAATERRLEDL---EEQIEELSEDIESLAAEIEE-LEELIEEL 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 500 VALMEKHKHQYDKIIEERDselgLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKE 579
Cdd:TIGR02168 872 ESELEALLNERASLEEALA----LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947
|
.
gi 767905786 580 K 580
Cdd:TIGR02168 948 E 948
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
3-515 |
2.65e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.34 E-value: 2.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 3 LNNNIEKMITAFEELRVQAENSRLEMHfKLKEDYEKIQHLEQEYKKEINDKEkqvsLLLIQITEKENKMKDLTFLLEESR 82
Cdd:TIGR04523 150 KEKELEKLNNKYNDLKKQKEELENELN-LLEKEKLNIQKNIDKIKNKLLKLE----LLLSNLKKKIQKNKSLESQISELK 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 83 DKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEE-KETQMEESNKARAA 161
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQlNQLKSEISDLNNQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 162 HSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEE----LKKVLGEKETLLY 237
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEkqneIEKLKKENQSYKQ 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 238 ENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENK 317
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 318 ELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVRE-------------------ELKQKRDE 378
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKkisslkekieklesekkekESKISDLE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 379 VKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYqKEIE 458
Cdd:TIGR04523 545 DELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKEL-EKAK 623
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 767905786 459 DKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIE 515
Cdd:TIGR04523 624 KENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIE 680
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
89-586 |
2.96e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 2.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 89 EEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTE 168
Cdd:PTZ00121 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE 1252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 169 FETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVEleELKKVLGEK---ETLLYENKQFEKI 245
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD--EAKKKAEEAkkaDEAKKKAEEAKKK 1330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 246 AEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTEL--TSHCNKLSLENKELTQET 323
Cdd:PTZ00121 1331 ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkADEAKKKAEEDKKKADEL 1410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 324 SDMTLELKNQQE---DINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLRKQVENK 400
Cdd:PTZ00121 1411 KKAAAAKKKADEakkKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK-KADEAKKKAEEAKKADEAK 1489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 401 NKyIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKfgEITDTYQKEIEDKKISEENLLEEVEKAKVIADE 480
Cdd:PTZ00121 1490 KK-AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA--KKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 481 AVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIER 560
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
|
490 500
....*....|....*....|....*.
gi 767905786 561 EEKEKLKREAKENTATLKEKKDKKTQ 586
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEE 1672
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
18-374 |
3.21e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 3.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 18 RVQAENSRLEMHFKLKEDYEKIQHLEQEykkeINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSE 97
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEEKIEELEEK----IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 98 NLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSfvvtEFETTVCSLE 177
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD----ELRAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 178 ELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMtkltnnkEVELEELKKVLGEKETLLyenkqfEKIAEELKGTEQEli 257
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEEL-------SEDIESLAAEIEELEELI------EELESELEALLNE-- 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 258 glLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLslenkeltqetsdmTLELKNQQEDI 337
Cdd:TIGR02168 882 --RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL--------------EVRIDNLQERL 945
|
330 340 350
....*....|....*....|....*....|....*...
gi 767905786 338 NNNKKQEERMLKQIENLQETETQ-LRNELEYVREELKQ 374
Cdd:TIGR02168 946 SEEYSLTLEEAEALENKIEDDEEeARRRLKRLENKIKE 983
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-626 |
4.30e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 4.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 15 EELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQvsllliqiTEKENKMKDLTFLLEESR--DKVNQLEEKT 92
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK--------EEAKKKADAAKKKAEEKKkaDEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 93 KLQSENLKQSIE---KQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSfvvtef 169
Cdd:PTZ00121 1404 KKKADELKKAAAakkKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK------ 1477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 170 ettvcSLEELLRTEQqrLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEV-ELEELKKVLGEKETLLYENKQFEKIAEE 248
Cdd:PTZ00121 1478 -----KAEEAKKADE--AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAkKADEAKKAEEAKKADEAKKAEEKKKADE 1550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 249 LKGTEQ----ELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETs 324
Cdd:PTZ00121 1551 LKKAEElkkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE- 1629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 325 dmtlELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKyI 404
Cdd:PTZ00121 1630 ----EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-A 1704
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 405 EELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITdtyQKEIEDKKISEENLLEEVEKAKVIADEAVKL 484
Cdd:PTZ00121 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK---KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 485 QKEIDKRCQHKIAEMVALMEKHKHQYDKIIE-ERDSELGLYKSKEQEQSSLRasleiELSNLKAELLSVKKQLEIEREEK 563
Cdd:PTZ00121 1782 EEELDEEDEKRRMEVDKKIKDIFDNFANIIEgGKEGNLVINDSKEMEDSAIK-----EVADSKNMQLEEADAFEKHKFNK 1856
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767905786 564 EKLKREAKENTATLKEKKDKKTQTF--LLETPEIYwKLDSKAVPSQTVSRNFTSVDHGISKDKRD 626
Cdd:PTZ00121 1857 NNENGEDGNKEADFNKEKDLKEDDEeeIEEADEIE-KIDKDDIEREIPNNNMAGKNNDIIDDKLD 1920
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
240-575 |
4.80e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 4.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 240 KQFEKIAEELKGTEQELIGL-LQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELtshcnklsleNKE 318
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLrLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL----------EEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 319 LTQETSDMtLELKNQQEDINNNKKQEERMLKQIENLQEtetqlrnELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVE 398
Cdd:TIGR02168 283 IEELQKEL-YALANEISRLEQQKQILRERLANLERQLE-------ELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 399 NKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEItdtyQKEIEDKKISEENLLEEVEKAKVIA 478
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL----EARLERLEDRRERLQQEIEELLKKL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 479 DEAVKlqkeidKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLeielsnlkAELLSVKKQLEI 558
Cdd:TIGR02168 431 EEAEL------KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL--------AQLQARLDSLER 496
|
330
....*....|....*..
gi 767905786 559 EREEKEKLKREAKENTA 575
Cdd:TIGR02168 497 LQENLEGFSEGVKALLK 513
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
44-583 |
5.18e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 5.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 44 QEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRS 123
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 124 VSTQKALEEDLQ-------IATKTICQLTEEKETQMEESNKARAAHS---FVVTEFETTVCSLEELLRTEQQ-------- 185
Cdd:TIGR02168 315 ERQLEELEAQLEeleskldELAEELAELEEKLEELKEELESLEAELEeleAELEELESRLEELEEQLETLRSkvaqlelq 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 186 ------RLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVEL--EELKKVLGEKETLLYENKQFEKIAEELKGTEQELI 257
Cdd:TIGR02168 395 iaslnnEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 258 GLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELEN---------------------EKLKNTELTSHCNKLSLEN 316
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNqsglsgilgvlselisvdegyEAAIEAALGGRLQAVVVEN 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 317 KE--------LTQETSD--MTLELKNQ-----QEDINNNKKQEERMLKQIENLQETETQLRNELEY-------------- 367
Cdd:TIGR02168 555 LNaakkaiafLKQNELGrvTFLPLDSIkgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllggvlvvddldna 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 368 ------------------------------------VREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQEN 411
Cdd:TIGR02168 635 lelakklrpgyrivtldgdlvrpggvitggsaktnsSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 412 KALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKr 491
Cdd:TIGR02168 715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ- 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 492 cqhkiaemvalMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAK 571
Cdd:TIGR02168 794 -----------LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
650
....*....|..
gi 767905786 572 ENTATLKEKKDK 583
Cdd:TIGR02168 863 ELEELIEELESE 874
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
176-490 |
7.64e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 7.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 176 LEELLRTEQqRLEKNEDQLKILTMELQKKSSELEEMTKLTN-NKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQ 254
Cdd:TIGR02169 176 LEELEEVEE-NIERLDLIIDEKRQQLERLRREREKAERYQAlLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 255 ELIGLLQAREKEVHDLEIQLTAIT------TSEQY--YSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDM 326
Cdd:TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNkkikdlGEEEQlrVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 327 TLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKckldKSEENCNNLRKQVENKNKYIEE 406
Cdd:TIGR02169 335 LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK----DYREKLEKLKREINELKRELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 407 LQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQK 486
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
....
gi 767905786 487 EIDK 490
Cdd:TIGR02169 491 ELAE 494
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
78-399 |
1.37e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 78 LEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNK 157
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 158 araahsfvvtefettvcsLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLY 237
Cdd:TIGR02168 759 ------------------LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 238 ENKQ-FEKIAEELKGTEQELIGLLQAREKEVHDLEI---QLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLS 313
Cdd:TIGR02168 821 NLRErLESLERRIAATERRLEDLEEQIEELSEDIESlaaEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 314 LENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQEtetQLRNELEYVREELKQKRDEVKCKLDKSEENCNNL 393
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
....*.
gi 767905786 394 RKQVEN 399
Cdd:TIGR02168 978 ENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
236-589 |
2.00e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 2.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 236 LYENKQFEKIAEELKGTEQELIGLLQAR---EKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKL 312
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELrriENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 313 SLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIenLQETETQLRNELEYVREELKQKR---DEVKCKLDKSEEN 389
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEEVSRIEarlREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 390 CNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEItdtyQKEIEDKKISEENLLE 469
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL----KKERDELEAQLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 470 EVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKhqydKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKA-- 547
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG----EDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAiq 979
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 767905786 548 ELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFL 589
Cdd:TIGR02169 980 EYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFM 1021
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
146-446 |
2.54e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 146 EEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNED----QLKILTMELQKKSSELEEMTKLTNNKEVE 221
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAElrelELALLVLRLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 222 LEELKKVLGEKETLLyenKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLK 301
Cdd:TIGR02168 255 LEELTAELQELEEKL---EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 302 NTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIEN-------LQETETQLRNELEYVREELKQ 374
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETlrskvaqLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 375 ------KRDEVKCKLDK--SEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKF 446
Cdd:TIGR02168 412 ledrreRLQQEIEELLKklEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
11-538 |
2.66e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 11 ITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEqEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEE 90
Cdd:PRK02224 222 IERYEEQREQARETRDEADEVLEEHEERREELE-TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 91 KTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTE---EKETQMEESNKARAAHSFVVT 167
Cdd:PRK02224 301 EAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEEraeELREEAAELESELEEAREAVE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 168 EFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEkIAE 247
Cdd:PRK02224 381 DRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE-CGQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 248 ELKGTEQelIGLLQAREKEVHDLEIQLTAITTseqyyskEVKDLKTELEN-EKLKNTEltSHCNKLSLENKELTQETSDM 326
Cdd:PRK02224 460 PVEGSPH--VETIEEDRERVEELEAELEDLEE-------EVEEVEERLERaEDLVEAE--DRIERLEERREDLEELIAER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 327 TLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELK---QKRDEVKCKLDkSEENCNNLRKQVENKNKY 403
Cdd:PRK02224 529 RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAelnSKLAELKERIE-SLERIRTLLAAIADAEDE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 404 IEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKqkfgeitdtYQKEIEDKKISEENLLEEVEKAKVIADEAVK 483
Cdd:PRK02224 608 IERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR---------IEEAREDKERAEEYLEQVEEKLDELREERDD 678
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 767905786 484 LQKEIDKrCQHKIAEMVALMEKHKHqydkiIEERDSEL-GLYKSKEQEQSS---LRASL 538
Cdd:PRK02224 679 LQAEIGA-VENELEELEELRERREA-----LENRVEALeALYDEAEELESMygdLRAEL 731
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
184-422 |
2.66e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 184 QQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE-NKQFEKIAEELKGTEQELIGLLQA 262
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAlEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 263 REKEVHDLEIQLTAITTSEQYYSKEVKdLKTELENEKLKNTELTshcnklslenKELTQETSDMTLELKNQQEDINNNKK 342
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALL-LSPEDFLDAVRRLQYL----------KYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 343 QEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAES 422
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
76-421 |
3.27e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.07 E-value: 3.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 76 FLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQiatkticQLTEEKETQMEES 155
Cdd:pfam12128 597 ASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLR-------RLFDEKQSEKDKK 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 156 NKARAAH-SFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKltnnkeVELEELKKVLGEKET 234
Cdd:pfam12128 670 NKALAERkDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALD------AQLALLKAAIAARRS 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 235 LLyenkqfekiAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSL 314
Cdd:pfam12128 744 GA---------KAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLAT 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 315 ENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQ----ETETQLRNELEYVRE-----ELKQKRDEVKCKLDK 385
Cdd:pfam12128 815 QLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQvrlsENLRGLRCEMSKLATlkedaNSEQAQGSIGERLAQ 894
|
330 340 350
....*....|....*....|....*....|....*.
gi 767905786 386 SEENCNNLRKQVENKNKYIEELQQENKALKKKGTAE 421
Cdd:pfam12128 895 LEDLKLKRDYLSESVKKYVEHFKNVIADHSGSGLAE 930
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
404-587 |
5.28e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 5.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 404 IEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQkEIEDKKISEENLLEEVEKakviadEAVK 483
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELAELEK------EIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 484 LQKEIDKRcQHKIAEMVALMEKH-KHQYDKIIEERDSELGLYKSKE--QEQSSLRASLEIELSNLKAELLSVKKQLEIER 560
Cdd:COG4942 95 LRAELEAQ-KEELAELLRALYRLgRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180
....*....|....*....|....*..
gi 767905786 561 EEKEKLKREAKENTATLKEKKDKKTQT 587
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKL 200
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
359-572 |
5.76e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 5.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 359 TQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELE 438
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 439 LESAKQKFGEITDTYQKEIEDKKI----SEENLLEEVEKAKVIADEAVKLQKEID--KRCQHKIAEMVALMEKHKHQYDK 512
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPARREQAEelRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 513 IIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKE 572
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
7-473 |
2.13e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 7 IEKMITAFEELRVQAEnsRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLL----------LIQITEKENKMKDLTF 76
Cdd:PRK03918 268 IEELKKEIEELEEKVK--ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLeeeingieerIKELEEKEERLEELKK 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 77 LLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTK----ELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQM 152
Cdd:PRK03918 346 KLKELEKRLEELEERHELYEEAKAKKEELERLKKRltglTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELK 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 153 EESNKARAAHSFV-VTEFETTVCSLEELLRTE-------QQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEV--EL 222
Cdd:PRK03918 426 KAIEELKKAKGKCpVCGRELTEEHRKELLEEYtaelkriEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELaeQL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 223 EELKKVLGE--KETLLYENKQFEKIAEELKGTEQELIGLLQaREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKL 300
Cdd:PRK03918 506 KELEEKLKKynLEELEKKAEEYEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGF 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 301 KNTEltshcnKLSLENKELtQETSDMTLELKNQQEDInnnkkqeERMLKQIENLQETETQLRNELEYVREELKQKRDEVK 380
Cdd:PRK03918 585 ESVE------ELEERLKEL-EPFYNEYLELKDAEKEL-------EREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 381 CKLDK-SEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLE---LELESAKQKFGEITDTYQKE 456
Cdd:PRK03918 651 ELEKKySEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREkakKELEKLEKALERVEELREKV 730
|
490
....*....|....*..
gi 767905786 457 IEDKKISEENLLEEVEK 473
Cdd:PRK03918 731 KKYKALLKERALSKVGE 747
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
30-572 |
2.37e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 2.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 30 FKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMkdltflleesrDKVNQLEEKTKLQSENLKQSIEKQHHL 109
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI-----------DKIKNKLLKLELLLSNLKKKIQKNKSL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 110 TKELEDIKvslqrsvSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEfettvcsleelLRTEQQRLEK 189
Cdd:TIGR04523 217 ESQISELK-------KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQ-----------LSEKQKELEQ 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 190 NEDQLKILTMELQKKSSELEEMTKLTN---NKEVElEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKE 266
Cdd:TIGR04523 279 NNKKIKELEKQLNQLKSEISDLNNQKEqdwNKELK-SELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 267 VHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEER 346
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 347 MLKQIENLQETETQLR---NELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESK 423
Cdd:TIGR04523 438 NNSEIKDLTNQDSVKEliiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTK 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 424 QLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISE-----ENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAE 498
Cdd:TIGR04523 518 KISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENlekeiDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKE 597
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767905786 499 MVALMeKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKE 572
Cdd:TIGR04523 598 KKDLI-KEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKE 670
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2-414 |
3.48e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 2 DLNNNIEKMITAFEELRVQAENsrlEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTfllEES 81
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEQ---DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSE---SEN 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 82 RDKVNQLEEKTKlQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAA 161
Cdd:TIGR04523 359 SEKQRELEEKQN-EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 162 HSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKvlgEKETLLYENKQ 241
Cdd:TIGR04523 438 NNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNE---EKKELEEKVKD 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 242 FEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQY--YSKEVKDLKTELENEKLKNTELTSHCNKLSLENKEL 319
Cdd:TIGR04523 515 LTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKenLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQK 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 320 TQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVEN 399
Cdd:TIGR04523 595 EKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTK 674
|
410
....*....|....*
gi 767905786 400 KNKYIEELQQENKAL 414
Cdd:TIGR04523 675 IDDIIELMKDWLKEL 689
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
16-583 |
6.68e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 6.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 16 ELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQ 95
Cdd:pfam02463 303 LKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 96 SENLKQSIEKqhhLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETT--- 172
Cdd:pfam02463 383 SERLSSAAKL---KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQelk 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 173 ------VCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIA 246
Cdd:pfam02463 460 llkdelELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVE 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 247 EELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDM 326
Cdd:pfam02463 540 NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDD 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 327 TLELKNQ-QEDINNNKKQEERMLKQIENLQETETQLRNELEYVR-----EELKQKRDEVKCKLDKSEENCNNLRKQVENK 400
Cdd:pfam02463 620 KRAKVVEgILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEvkaslSELTKELLEIQELQEKAESELAKEEILRRQL 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 401 NKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADE 480
Cdd:pfam02463 700 EIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEE 779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 481 AVKLQK---EIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLE 557
Cdd:pfam02463 780 REKTEKlkvEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL 859
|
570 580
....*....|....*....|....*.
gi 767905786 558 IEREEKEKLKREAKENTATLKEKKDK 583
Cdd:pfam02463 860 EEEITKEELLQELLLKEEELEEQKLK 885
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
212-445 |
1.56e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 212 TKLTNNKEVELEELKKVLGEKETLLYEN-KQFEKIAEELKGTEQELIgllqAREKEVHDLEIQLTAITTSEQYYSKEVKD 290
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALkKEEKALLKQLAALERRIA----ALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 291 LKTELENEKLKNTELTSHCNKLSLENKeltqetsdmtLELKNQQEDINNNKKQEERMLKQIENLQETETQLR---NELEY 367
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPP----------LALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRadlAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767905786 368 VREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQK 445
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
175-519 |
2.58e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 175 SLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKvlgEKETLLYENKQFEKIAEELKGTEQ 254
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK---EIEQLEQEEEKLKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 255 ELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKN-----TELTSHCNKLSLENKELTQETSDMTLE 329
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEiqaelSKLEEEVSRIEARLREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 330 LKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKckldKSEENCNNLRKQVENKNKYIEELQQ 409
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR----DLESRLGDLKKERDELEAQLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 410 enkalkKKGTAESkQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKkiSEENLLEEVEKAKVIADEAVKLQKEID 489
Cdd:TIGR02169 904 ------KIEELEA-QIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIP--EEELSLEDVQAELQRVEEEIRALEPVN 974
|
330 340 350
....*....|....*....|....*....|
gi 767905786 490 KRCQHKIAEMVALMEKHKHQYDKIIEERDS 519
Cdd:TIGR02169 975 MLAIQEYEEVLKRLDELKEKRAKLEEERKA 1004
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
79-597 |
2.88e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 79 EESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQK---ALEEDLQIATKTICQLTEEKETQMEES 155
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQqktTLTQKLQSLCKELDILQREQATIDTRT 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 156 NKARAAHSFVVTEFETTVCSLEELlRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVlgeketl 235
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYA-ELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRK------- 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 236 lyeNKQFEKIAEELKGTEQELIGllQAREKEVHDLEIQLTAITTSE-QYYSKEVKDLKTELENEKLKNTELTSHCNKLSL 314
Cdd:TIGR00618 489 ---KAVVLARLLELQEEPCPLCG--SCIHPNPARQDIDNPGPLTRRmQRGEQTYAQLETSEEDVYHQLTSERKQRASLKE 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 315 ENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKL----------- 383
Cdd:TIGR00618 564 QMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLhlqqcsqelal 643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 384 --------------DKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEI 449
Cdd:TIGR00618 644 kltalhalqltltqERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEI 723
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 450 TDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKH------QYDKIIEERDSELGL 523
Cdd:TIGR00618 724 ENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHlaaeiqFFNRLREEDTHLLKT 803
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767905786 524 YKSK-EQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLETPEIYW 597
Cdd:TIGR00618 804 LEAEiGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
47-584 |
3.50e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 47 KKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVST 126
Cdd:TIGR04523 46 KNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVE 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 127 QKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFEtTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSS 206
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE-ELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLS 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 207 ELEEMTKLTNNKEVELEELKKVLGE-KETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYS 285
Cdd:TIGR04523 205 NLKKKIQKNKSLESQISELKKQNNQlKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 286 ---KEVKDLKTELENEKLKNTELTSHCNKLSLENKEltQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLR 362
Cdd:TIGR04523 285 eleKQLNQLKSEISDLNNQKEQDWNKELKSELKNQE--KKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 363 NELEYVREELKQKRDEVKCKLDKS---EENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELEL 439
Cdd:TIGR04523 363 RELEEKQNEIEKLKKENQSYKQEIknlESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEI 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 440 ESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQhkiaeMVALMEKHKHQYDKIIEERDS 519
Cdd:TIGR04523 443 KDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEK-----ELKKLNEEKKELEEKVKDLTK 517
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 520 ELGLYKSKEQEQSSLRASLEIELSNLKAELLSV-----KKQLEIEREEKEKLKREAKENTATLKEKKDKK 584
Cdd:TIGR04523 518 KISSLKEKIEKLESEKKEKESKISDLEDELNKDdfelkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEK 587
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
78-414 |
4.64e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.81 E-value: 4.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 78 LEESRDKVNQLEEKTKLQSENLKQSIEKQH-HLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEEsn 156
Cdd:pfam07888 46 LLQAQEAANRQREKEKERYKRDREQWERQRrELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQ-- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 157 kaRAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLL 236
Cdd:pfam07888 124 --RAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 237 YENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLEN 316
Cdd:pfam07888 202 AQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQA 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 317 KELTQETSDMTLEL--------KNQQEDINNNKKQEERMLKQIENLQETETQL---RNELEYVREELKQKRDEVKCKLDK 385
Cdd:pfam07888 282 AQLTLQLADASLALregrarwaQERETLQQSAEADKDRIEKLSAELQRLEERLqeeRMEREKLEVELGREKDCNRVQLSE 361
|
330 340
....*....|....*....|....*....
gi 767905786 386 SEENCNNLRKQVENKNKYIEELQQENKAL 414
Cdd:pfam07888 362 SRRELQELKASLRVAQKEKEQLQAEKQEL 390
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
355-583 |
4.78e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 4.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 355 QETETQLRNELEYVREELKQKRDEvkckLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNK 434
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKE----LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 435 LELELESAKQKFGEITDTYQKeiedkkISEENLLEEVEKAKVIADEAVKLQ--KEIDKRCQHKIAEMVALMEKHKHQYDK 512
Cdd:COG4942 95 LRAELEAQKEELAELLRALYR------LGRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767905786 513 IIEERDSELGLYKSKEQEQSSLRAsleielsnLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDK 583
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEA--------LKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-549 |
6.12e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 6.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 15 EELRVQAENSRLemhFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKL 94
Cdd:COG1196 279 LELELEEAQAEE---YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 95 QSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVvtefettvc 174
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL--------- 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 175 sLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQ 254
Cdd:COG1196 427 -EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 255 ELIGLLQAREKEVHDLEIQLTA--ITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQEtsdmTLELKN 332
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAvlIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT----FLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 333 QQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVkckldkseencnnlRKQVENKNKYIEELQQENK 412
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV--------------AARLEAALRRAVTLAGRLR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 413 ALKKKGTAESKQLNVYEIKVNKLELELESAKQKfgeitdtyQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRC 492
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE--------LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 767905786 493 QHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAEL 549
Cdd:COG1196 720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
175-569 |
7.75e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 7.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 175 SLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTkltNNKEVELEELKKVLGEKETLL---------YENKQFEKI 245
Cdd:pfam15921 128 AMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDML---EDSNTQIEQLRKMMLSHEGVLqeirsilvdFEEASGKKI 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 246 AEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEklknTELTshcnkLSLENKELTQETSD 325
Cdd:pfam15921 205 YEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNK----IELL-----LQQHQDRIEQLISE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 326 MTLELKNQQEDINNNKKQEERMLKQIENLQEtetQLRNE-------LEYVREELKQKRDEVKCKLDKSEENCNNLRKQVE 398
Cdd:pfam15921 276 HEVEITGLTEKASSARSQANSIQSQLEIIQE---QARNQnsmymrqLSDLESTVSQLRSELREAKRMYEDKIEELEKQLV 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 399 NKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDtyqkEIEDKKISEENLLEEVEKAKVIA 478
Cdd:pfam15921 353 LANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWD----RDTGNSITIDHLRRELDDRNMEV 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 479 DEAVKLQKEIDKRCQ-----------------HKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLE-- 539
Cdd:pfam15921 429 QRLEALLKAMKSECQgqmerqmaaiqgkneslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQek 508
|
410 420 430
....*....|....*....|....*....|...
gi 767905786 540 ---IELSNlkAELLSVKKQLEIEREEKEKLKRE 569
Cdd:pfam15921 509 eraIEATN--AEITKLRSRVDLKLQELQHLKNE 539
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
317-490 |
8.69e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 8.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 317 KELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEEN------- 389
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSggsvsyl 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 390 ---------------CNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQ 454
Cdd:COG3883 106 dvllgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLA 185
|
170 180 190
....*....|....*....|....*....|....*.
gi 767905786 455 kEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDK 490
Cdd:COG3883 186 -QLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
165-406 |
1.08e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 165 VVTEFETTVCSLEELLRTEQQrLEKNEDQLKILTmELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQfEK 244
Cdd:COG4913 223 TFEAADALVEHFDDLERAHEA-LEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAEL-EE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 245 IAEELKGTEQElIGLLQAREKEVHDLEIQLTAittseQYYS---KEVKDLKTELENeklknteLTSHCNKLSLENKELTQ 321
Cdd:COG4913 300 LRAELARLEAE-LERLEARLDALREELDELEA-----QIRGnggDRLEQLEREIER-------LERELEERERRRARLEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 322 ETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKN 401
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR 446
|
....*
gi 767905786 402 KYIEE 406
Cdd:COG4913 447 DALAE 451
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-299 |
1.19e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 2 DLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDkekqvsllliqitekenkmkdltflLEES 81
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE-------------------------LKAL 801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 82 RDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTIcqltEEKETQMEESNKARAA 161
Cdd:TIGR02168 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI----EELEELIEELESELEA 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 162 HSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYEN-- 239
Cdd:TIGR02168 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEae 957
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767905786 240 KQFEKIAEELKGTEQELIGLlqarEKEVHDL-EIQLTAIttsEQYysKEVKDLKTELENEK 299
Cdd:TIGR02168 958 ALENKIEDDEEEARRRLKRL----ENKIKELgPVNLAAI---EEY--EELKERYDFLTAQK 1009
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
81-557 |
2.00e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 81 SRDKVNQLEEKTKLQSENLKQSIEKQHhLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARA 160
Cdd:TIGR00618 183 LMEFAKKKSLHGKAELLTLRSQLLTLC-TPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 161 AHSFV--VTEFETTVCSLEEL------------LRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELK 226
Cdd:TIGR00618 262 LKQLRarIEELRAQEAVLEETqerinrarkaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 227 KVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKeVHDLEIQLTAITTSEQYYSKEVKDLKTE--------LENE 298
Cdd:TIGR00618 342 EQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQH-IHTLQQQKTTLTQKLQSLCKELDILQREqatidtrtSAFR 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 299 KLKNTELTSHCN-KLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRD 377
Cdd:TIGR00618 421 DLQGQLAHAKKQqELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQ 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 378 EVKCKLDKSEENCNNLRKQ----------VENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKL---ELELESAKQ 444
Cdd:TIGR00618 501 EEPCPLCGSCIHPNPARQDidnpgpltrrMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIqqsFSILTQCDN 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 445 KFGEITDTYQKEIED-KKISEENLLEEVEKAKVIADEAVKLQKEIDKR----CQHKIAEMVALMEKHKHQYDKIIEERDS 519
Cdd:TIGR00618 581 RSKEDIPNLQNITVRlQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQdvrlHLQQCSQELALKLTALHALQLTLTQERV 660
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 767905786 520 ELGLYKSKEQEQSSL--RASLEIELSNLKAELLSVKKQLE 557
Cdd:TIGR00618 661 REHALSIRVLPKELLasRQLALQKMQSEKEQLTYWKEMLA 700
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
424-586 |
2.10e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 424 QLNVYEIKVNKLELELESAKQKfgeiTDTYQKEIEDKKISEENLLEEVEKAKviaDEAVKLQKEIDKRcQHKIAEMVALM 503
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAE----LDALQAELEELNEEYNELQAELEALQ---AEIDKLQAEIAEA-EAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 504 EKH-KHQY----------------------------DKIIEERDSELGLYKSKEQEQSSLRASLEI---ELSNLKAELLS 551
Cdd:COG3883 89 GERaRALYrsggsvsyldvllgsesfsdfldrlsalSKIADADADLLEELKADKAELEAKKAELEAklaELEALKAELEA 168
|
170 180 190
....*....|....*....|....*....|....*
gi 767905786 552 VKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQ 586
Cdd:COG3883 169 AKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEA 203
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
239-546 |
2.12e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.51 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 239 NKQFEKIAEELKGTEQELIGL---LQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLE 315
Cdd:COG4372 44 QEELEQLREELEQAREELEQLeeeLEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 316 NKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEY-----VREELKQKRDEVKCKLDKSEENC 390
Cdd:COG4372 124 RQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAlseaeAEQALDELLKEANRNAEKEEELA 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 391 NNLRKQV-ENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLE 469
Cdd:COG4372 204 EAEKLIEsLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAAL 283
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767905786 470 EVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLK 546
Cdd:COG4372 284 ELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLS 360
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
165-584 |
2.83e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 165 VVTEFETTVCSLEELLRTE---QQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQ 241
Cdd:PRK03918 170 VIKEIKRRIERLEKFIKRTeniEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 242 FEKIAEELKGTEQELIGLLQAREKEVHDLEiqltaittseqyysKEVKDLKtELENEKLKNTELTSHCNKLSLENKELTQ 321
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELE--------------EKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 322 ETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKqVENKN 401
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK-LEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 402 KYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKF----GEITDTYQKEIEDKKISEenlLEEVEKAKVI 477
Cdd:PRK03918 394 EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAE---LKRIEKELKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 478 ADEAVKLQKEIDKRCQHKIAEMVALMEKHKhqYDKIIEERDSELGLYKSKEQEQSSLrasleiELSNLKAELLSVKKQLE 557
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESELIKLKE--LAEQLKELEEKLKKYNLEELEKKAE------EYEKLKEKLIKLKGEIK 542
|
410 420
....*....|....*....|....*..
gi 767905786 558 IEREEKEKLKREAKENTATLKEKKDKK 584
Cdd:PRK03918 543 SLKKELEKLEELKKKLAELEKKLDELE 569
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
65-580 |
2.92e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 65 TEKENKMKDLTFLLEESRDKVNQLE-EKTKLQS--ENLKQSIEKQHHLTKELEDIKVSLQRSVstqKALEEDLQIATKTI 141
Cdd:pfam01576 71 QELEEILHELESRLEEEEERSQQLQnEKKKMQQhiQDLEEQLDEEEAARQKLQLEKVTTEAKI---KKLEEDILLLEDQN 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 142 CQLTEEKEtQMEESnkaraahsfvVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVE 221
Cdd:pfam01576 148 SKLSKERK-LLEER----------ISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 222 LEELKKVLGEKETllyenkQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSkevkDLKTELENEKLK 301
Cdd:pfam01576 217 STDLQEQIAELQA------QIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQIS----ELQEDLESERAA 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 302 NTELTSHCNKLSLENKELTQETSDmTLELKNQQEDINNNKKQEERMLKQieNLQETETQLRNELEYVREELKQKRDEVKC 381
Cdd:pfam01576 287 RNKAEKQRRDLGEELEALKTELED-TLDTTAAQQELRSKREQEVTELKK--ALEEETRSHEAQLQEMRQKHTQALEELTE 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 382 KLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLEL---ELESAKQKFGEITDTYQKEIE 458
Cdd:pfam01576 364 QLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQArlsESERQRAELAEKLSKLQSELE 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 459 dkkiSEENLLEEVEKakviadEAVKLQKEIDKRCQ--HKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRA 536
Cdd:pfam01576 444 ----SVSSLLNEAEG------KNIKLSKDVSSLESqlQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKR 513
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 767905786 537 SLEIELSNLKAELLSVKKQLEIE-------REEKEKLKREAKENTATLKEK 580
Cdd:pfam01576 514 NVERQLSTLQAQLSDMKKKLEEDagtlealEEGKKRLQRELEALTQQLEEK 564
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
22-600 |
3.04e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 22 ENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQ 101
Cdd:TIGR00606 523 EMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELAS 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 102 SIEKQHHLTKELEDIKVSLQR------SVSTQKALEEDLQIATKTICQLTEEK----------ETQMEESNKARAAHSFV 165
Cdd:TIGR00606 603 LEQNKNHINNELESKEEQLSSyedklfDVCGSQDEESDLERLKEEIEKSSKQRamlagatavySQFITQLTDENQSCCPV 682
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 166 VTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEketLLYENKQFEKI 245
Cdd:TIGR00606 683 CQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPE---LRNKLQKVNRD 759
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 246 AEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYsKEVKDLKTELENEKLKnteltSHCNKLSLENKELTQETSD 325
Cdd:TIGR00606 760 IQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQ-MELKDVERKIAQQAAK-----LQGSDLDRTVQQVNQEKQE 833
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 326 MTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKR--DEVKCKLDKSEENCNNLRKQVENKN-- 401
Cdd:TIGR00606 834 KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQqfEEQLVELSTEVQSLIREIKDAKEQDsp 913
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 402 --KYIEELQQENKALKKKGTAESK----QLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAK 475
Cdd:TIGR00606 914 leTFLEKDQQEKEELISSKETSNKkaqdKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQ 993
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 476 VIADEAVKLQKEI--DKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG-LYKSKEQEQSSLRASLEIELSNLKAELLSV 552
Cdd:TIGR00606 994 EKINEDMRLMRQDidTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKeMGQMQVLQMKQEHQKLEENIDLIKRNHVLA 1073
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 767905786 553 KKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLETPEIYWKLD 600
Cdd:TIGR00606 1074 LGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLD 1121
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
47-592 |
3.04e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 47 KKEINDKEKQVSLLLIQITEKENKMKDLtflLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVST 126
Cdd:TIGR00606 400 IERQEDEAKTAAQLCADLQSKERLKQEQ---ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILEL 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 127 QKALeedlqiaTKTICQLTEEKETQMEESNKARaahsfvVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSS 206
Cdd:TIGR00606 477 DQEL-------RKAERELSKAEKNSLTETLKKE------VKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKD 543
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 207 ELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGL---LQAREKEVHDLEIQLTAITTSEQY 283
Cdd:TIGR00606 544 KMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLnkeLASLEQNKNHINNELESKEEQLSS 623
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 284 YSKEVKDLkTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRN 363
Cdd:TIGR00606 624 YEDKLFDV-CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQS 702
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 364 ELEYVREELKQKRDEVKCKLDKSEENCNNLRKQ---VENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELE 440
Cdd:TIGR00606 703 KLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRqsiIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEE 782
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 441 SAKQKFGEITDTYQKEIEdkkiseenlLEEVEKAkvIADEAVKLQKEIDKRCQHKIAEMValmEKHKHQYDKIIeerdSE 520
Cdd:TIGR00606 783 SAKVCLTDVTIMERFQME---------LKDVERK--IAQQAAKLQGSDLDRTVQQVNQEK---QEKQHELDTVV----SK 844
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767905786 521 LGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLET 592
Cdd:TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLET 916
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
271-521 |
3.05e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.66 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 271 EIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTlELKNQ---QEDINNNKKQEERM 347
Cdd:TIGR01612 733 ELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKIS-EIKNHyndQINIDNIKDEDAKQ 811
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 348 -LKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQenkalKKKGTAESKQLN 426
Cdd:TIGR01612 812 nYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTN-----KIKAEISDDKLN 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 427 VYEIKVNkleleleSAKQKFGEITDTYQKEIED----KKISE-----ENLLEEVEKAKviaDEAVKLQKEIDKRCQhKIA 497
Cdd:TIGR01612 887 DYEKKFN-------DSKSLINEINKSIEEEYQNintlKKVDEyikicENTKESIEKFH---NKQNILKEILNKNID-TIK 955
|
250 260
....*....|....*....|....
gi 767905786 498 EMVALMEKHKHQYDKIIEERDSEL 521
Cdd:TIGR01612 956 ESNLIEKSYKDKFDNTLIDKINEL 979
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
78-299 |
3.43e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 78 LEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNK 157
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 158 ARAAHSFVVTEFETT--VCSLEELLRTEQ-QRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKvlgEKET 234
Cdd:COG4942 102 QKEELAELLRALYRLgrQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA---ELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767905786 235 LLYENKQFEKIAEELKGTEQELIGLLQAREKEvhdLEIQLTAITTSEQYYSKEVKDLKTELENEK 299
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAE---LAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
44-376 |
3.61e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 44 QEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVN-QLEEKTKLQSENLKQSIEKQHHLTK-----ELEDIK 117
Cdd:TIGR00618 559 ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEkLSEAEDMLACEQHALLRKLQPEQDLqdvrlHLQQCS 638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 118 VSLQRSVSTQKALEEDL-----QIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNED 192
Cdd:TIGR00618 639 QELALKLTALHALQLTLtqervREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDR 718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 193 QLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTE-QELIGLLQAREKEVHDLE 271
Cdd:TIGR00618 719 EFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAElSHLAAEIQFFNRLREEDT 798
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 272 IQLTAITTSEQYYSKEVKDLKTeLENEKLKNTELTSHcnklslenkELTQETSDMTLELKNQQEDINNNKKQEERMLKQI 351
Cdd:TIGR00618 799 HLLKTLEAEIGQEIPSDEDILN-LQCETLVQEEEQFL---------SRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQ 868
|
330 340
....*....|....*....|....*
gi 767905786 352 ENLqeteTQLRNELEYVREELKQKR 376
Cdd:TIGR00618 869 AKI----IQLSDKLNGINQIKIQFD 889
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
347-591 |
4.83e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 4.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 347 MLKQIENLQETETQLRNELEYVR-EELKQKrdevkckldkSEENCNNLRKQVENKNKYIEELQQENKALKKkgtaESKQL 425
Cdd:PRK05771 61 KLRSYLPKLNPLREEKKKVSVKSlEELIKD----------VEEELEKIEKEIKELEEEISELENEIKELEQ----EIERL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 426 NVYE-IKVN-KLELELESAKQKFGEItdtyqkeiedKKISEENLLEEVEKAKVIADEAVKlqkeidkrcqhkiAEMVALM 503
Cdd:PRK05771 127 EPWGnFDLDlSLLLGFKYVSVFVGTV----------PEDKLEELKLESDVENVEYISTDK-------------GYVYVVV 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 504 EKHKHQYDKIIEE-RDSELGLYKSKEQEQSS-LRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEK- 580
Cdd:PRK05771 184 VVLKELSDEVEEElKKLGFERLELEEEGTPSeLIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERa 263
|
250
....*....|....*.
gi 767905786 581 ----KDKKT-QTFLLE 591
Cdd:PRK05771 264 ealsKFLKTdKTFAIE 279
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
284-487 |
5.27e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.53 E-value: 5.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 284 YSKEVKDLKTELENEKLKNTELtshcNKLSLENKELTQETSDMTlelKNQQED-INNNKKQEERMLKQIENLQETETQLR 362
Cdd:COG5022 873 SAQRVELAERQLQELKIDVKSI----SSLKLVNLELESEIIELK---KSLSSDlIENLEFKTELIARLKKLLNNIDLEEG 945
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 363 NELEYVREELKQKRDEVKCKLDKSEENCNNLRKQ----VENKNKYIEELQQENKAL------KKKGTAESKQLNVYEIKV 432
Cdd:COG5022 946 PSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKstilVREGNKANSELKNFKKELaelskqYGALQESTKQLKELPVEV 1025
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767905786 433 nkleLELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKviADEAVKLQKE 487
Cdd:COG5022 1026 ----AELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQA--RYKALKLRRE 1074
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
31-233 |
5.68e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 5.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 31 KLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLT 110
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 111 KELEDIKVSLQRSvSTQKALE--------EDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELL-- 180
Cdd:COG4942 104 EELAELLRALYRL-GRQPPLAlllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLae 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 767905786 181 -RTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKE 233
Cdd:COG4942 183 lEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
48-266 |
9.40e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 9.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 48 KEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQsiekqhhLTKELEDIKVSLQRSVSTQ 127
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA-------LEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 128 KALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSE 207
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767905786 208 LEEMTKLTNNKEVELEELKKVLGEKETLLY----ENKQFEKIAEELKGTEQELIGLLQAREKE 266
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLArlekELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
366-572 |
1.09e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 366 EYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENK--ALKKKGTAESKQLNVYEIKVNKLELELESAK 443
Cdd:COG3206 160 AYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 444 QKFgeitDTYQKEIEDKKISEENLLEEVEKAKVIADEAvKLQKEIDKrcqhkiaemvaLMEKHKHQYDKIIEERDSELGL 523
Cdd:COG3206 240 ARL----AALRAQLGSGPDALPELLQSPVIQQLRAQLA-ELEAELAE-----------LSARYTPNHPDVIALRAQIAAL 303
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 767905786 524 YKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKE 572
Cdd:COG3206 304 RAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAE 352
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
314-416 |
1.18e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 314 LENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELE-------YVREELKQKRDEVKCKLDKS 386
Cdd:COG2433 385 LIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEekderieRLERELSEARSEERREIRKD 464
|
90 100 110
....*....|....*....|....*....|....*.
gi 767905786 387 EE------NCNNLRKQVENKNKYIEELQQENKALKK 416
Cdd:COG2433 465 REisrldrEIERLERELEEERERIEELKRKLERLKE 500
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
108-581 |
1.20e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 108 HLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLtEEKETQMEESNKARAAHSFVVTEFETTVCSLEELlRTEQQRL 187
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI-NEISSELPELREELEKLEKEVKELEELKEEIEEL-EKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 188 EKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIA---EELKGTEQELIGLLQARE 264
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELreiEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 265 KEVHDLEIQLTAITTSEQYYSKEVKDLKT---ELENEKLKNTELTSHCNKLSLEN--------KELTQETSDMTLELKNQ 333
Cdd:PRK03918 331 KELEEKEERLEELKKKLKELEKRLEELEErheLYEEAKAKKEELERLKKRLTGLTpeklekelEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 334 QEDINNNKKQEERMLKQIENLQE------------TETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLRKQVENKN 401
Cdd:PRK03918 411 TARIGELKKEIKELKKAIEELKKakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELK-EIEEKERKLRKELRELEKVL 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 402 KYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEIT---DTYQKEIEDKKISEENLLEEVEKAKVIA 478
Cdd:PRK03918 490 KKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKgeiKSLKKELEKLEELKKKLAELEKKLDELE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 479 DEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSElglykSKEQEQSSLRASLEIELSNLKAELLSVKKQLEI 558
Cdd:PRK03918 570 EELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAE-----KELEREEKELKKLEEELDKAFEELAETEKRLEE 644
|
490 500
....*....|....*....|...
gi 767905786 559 EREEKEKLKREAKENTATLKEKK 581
Cdd:PRK03918 645 LRKELEELEKKYSEEEYEELREE 667
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
39-472 |
1.28e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 39 IQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLtkELEDIKV 118
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL--EKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 119 SLQRSVSTQKALEEDLQIatktICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRteqQRLEKNEDQLKILT 198
Cdd:COG4717 126 QLLPLYQELEALEAELAE----LPERLEELEERLEELRELEEELEELEAELAELQEELEELLE---QLSLATEEELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 199 MELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQE-LIGLLQAREKEVHDLEIQLTAI 277
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaALLALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 278 TT---------------SEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKK 342
Cdd:COG4717 279 LFlvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 343 QEERMlkQIENLQETETQLRNELE-------YVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALK 415
Cdd:COG4717 359 LEEEL--QLEELEQEIAALLAEAGvedeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEE 436
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 767905786 416 KKgtaesKQLNVYEIKVNKLELELESAKQKFGEITDtyQKEIEDKKISEENLLEEVE 472
Cdd:COG4717 437 LE-----EELEELEEELEELREELAELEAELEQLEE--DGELAELLQELEELKAELR 486
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
456-572 |
1.32e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 456 EIEDKKISEENLLEEVEKAKVIADEAVKLQKEiDKRCQhKIAEMVALMEKHKHQYDKIIEERDSELG-----LYKSKEQE 530
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREKEHEERELTEE-EEEIR-RLEEQVERLEAEVEELEAELEEKDERIErlereLSEARSEE 457
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 767905786 531 QSSLRAslEIELSNLKAELLSVKKQLEIEREEKEKLKREAKE 572
Cdd:COG2433 458 RREIRK--DREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
196-579 |
1.93e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 196 ILTMELQKKSSELEemTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREK---EVHDLEI 272
Cdd:COG4717 46 MLLERLEKEADELF--KPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEElreELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 273 QLTAITTSEQYYS--KEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDinnNKKQEERMLKQ 350
Cdd:COG4717 124 LLQLLPLYQELEAleAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA---TEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 351 IENLQETETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLRKQVENKNKYI----------EELQQENKALKKKGTA 420
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELE-QLENELEAAALEERLKEARLLLLiaaallallgLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 421 ----------------ESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKL 484
Cdd:COG4717 280 flvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 485 QKEIDKRCQHKiaEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLE------------IELSNLKAELLSV 552
Cdd:COG4717 360 EEELQLEELEQ--EIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEellgeleelleaLDEEELEEELEEL 437
|
410 420
....*....|....*....|....*..
gi 767905786 553 KKQLEIEREEKEKLKREAKENTATLKE 579
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQ 464
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
349-490 |
2.07e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 349 KQIENLQETETQLRNELEyvreELKQKRDEVKCKLDKSEENCNNLRKQV-ENKNKYIEELQQENKALKKKGTAESKQLNV 427
Cdd:COG4913 288 RRLELLEAELEELRAELA----RLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767905786 428 YEIKVNKLELELESAKQKFGEItdtyQKEIEDKKISEENLLEEVEKAKV-IADEAVKLQKEIDK 490
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAAL----RAEAAALLEALEEELEALEEALAeAEAALRDLRRELRE 423
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
315-602 |
2.19e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 315 ENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLR 394
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 395 KQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKA 474
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 475 KVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQydkiiEERDSELGLYKSKEQEQSSLRASlEIELSNLKAELLSVKK 554
Cdd:pfam02463 334 KEEIEELEKELKELEIKREAEEEEEEELEKLQEKL-----EQLEEELLAKKKLESERLSSAAK-LKEEELELKSEEEKEA 407
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 767905786 555 QLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLETPEIYWKLDSK 602
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEK 455
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
398-587 |
2.26e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 398 ENKNKYIEELQQENKALKKKgtaeSKQLNVYEIKVNKLELELESAKQKFgeitdtyqKEIEDKKISEenLLEEVEKAKVI 477
Cdd:PRK00409 516 EKLNELIASLEELERELEQK----AEEAEALLKEAEKLKEELEEKKEKL--------QEEEDKLLEE--AEKEAQQAIKE 581
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 478 A-DEAVKLQKEIDKRCQHKIAEMVA--LMEKHKHqYDKIIEERDSELglyKSKEQEQSSLRASLEIELSNL--KAELLSV 552
Cdd:PRK00409 582 AkKEADEIIKELRQLQKGGYASVKAheLIEARKR-LNKANEKKEKKK---KKQKEKQEELKVGDEVKYLSLgqKGEVLSI 657
|
170 180 190
....*....|....*....|....*....|....*...
gi 767905786 553 KKQLEIEREE---KEKLKREAKENTATLKEKKDKKTQT 587
Cdd:PRK00409 658 PDDKEAIVQAgimKMKVPLSDLEKIQKPKKKKKKKPKT 695
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
348-518 |
2.41e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 348 LKQIENLQETETQLRnELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNv 427
Cdd:COG1579 6 LRALLDLQELDSELD-RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 428 yEIKVNK----LELELESAKqkfgeitdtyqKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALM 503
Cdd:COG1579 84 -NVRNNKeyeaLQKEIESLK-----------RRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL 151
|
170
....*....|....*
gi 767905786 504 EKHKHQYDKIIEERD 518
Cdd:COG1579 152 AELEAELEELEAERE 166
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
402-576 |
2.70e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 402 KYIEELQQENKALKKKGTAESKQlnvyEIKVNKLELELESaKQKFGEITDTyQKEIEDKKISEENLLEEVEKAKviaDEA 481
Cdd:PRK12704 42 RILEEAKKEAEAIKKEALLEAKE----EIHKLRNEFEKEL-RERRNELQKL-EKRLLQKEENLDRKLELLEKRE---EEL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 482 VKLQKEIDKRCQHkiaemvalMEKHKHQYDKIIEERDSEL----GLykSKEQEQSSLRASLEIELSNLKAELLSvkkqlE 557
Cdd:PRK12704 113 EKKEKELEQKQQE--------LEKKEEELEELIEEQLQELerisGL--TAEEAKEILLEKVEEEARHEAAVLIK-----E 177
|
170
....*....|....*....
gi 767905786 558 IEREEKEKLKREAKENTAT 576
Cdd:PRK12704 178 IEEEAKEEADKKAKEILAQ 196
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
32-615 |
3.27e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 32 LKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKE----NKMKDLTFLLEESRDKVNQLEEKTKLQSEnlkqsiekqh 107
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSieynNAMDDYNNLKSALNELSSLEDMKNRYESE---------- 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 108 hltkeledikvslqrsvstQKALEEDLQIATKTICQLTEEKETQME-ESNKARAAHSFVVTEFE--TTVCSLEELLRTEQ 184
Cdd:PRK01156 258 -------------------IKTAESDLSMELEKNNYYKELEERHMKiINDPVYKNRNYINDYFKykNDIENKKQILSNID 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 185 QRLEKNEDQLKILTmELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE----NKQFEKIAEELKGTEQELIGLL 260
Cdd:PRK01156 319 AEINKYHAIIKKLS-VLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSieslKKKIEEYSKNIERMSAFISEIL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 261 QAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENK------ELTQETSDMTL------ 328
Cdd:PRK01156 398 KIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcgtTLGEEKSNHIInhynek 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 329 ---------ELKNQQEDINNNKKQEERMLKQIE----NLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNnlrk 395
Cdd:PRK01156 478 ksrleekirEIEIEVKDIDEKIVDLKKRKEYLEseeiNKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKN---- 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 396 qvENKNKYIEELQQEN---------------KALKKKGTAESKQLNVYEIKVNKLELELESAKQkfgeITDTYQKEIEDK 460
Cdd:PRK01156 554 --RYKSLKLEDLDSKRtswlnalavislidiETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKS----YIDKSIREIENE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 461 KISEENLLEEVEKAKVIADeavKLQKEIDKrCQHKIAEMvalmekhkhqydKIIEERDSELglyKSKEQEQSSLRASLEI 540
Cdd:PRK01156 628 ANNLNNKYNEIQENKILIE---KLRGKIDN-YKKQIAEI------------DSIIPDLKEI---TSRINDIEDNLKKSRK 688
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767905786 541 ELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATL-KEKKDKKTQTFLLETPEIYWKLDSKAVPSQTVSRNFTS 615
Cdd:PRK01156 689 ALDDAKANRARLESTIEILRTRINELSDRINDINETLeSMKKIKKAIGDLKRLREAFDKSGVPAMIRKSASQAMTS 764
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
15-402 |
3.65e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 15 EELRVQAEnSRLEMHFKLKEDYEKIQHLEQEYKKEINdkekqVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKL 94
Cdd:PRK04863 789 EQLRAERE-ELAERYATLSFDVQKLQRLHQAFSRFIG-----SHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQ 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 95 QSENLKQSIEKQHHLTKELEDIKVslqrsvstqkaLEEDlqiatkTICQLTEEKETQMEESNKARAahsfVVTEFETTVC 174
Cdd:PRK04863 863 QRSQLEQAKEGLSALNRLLPRLNL-----------LADE------TLADRVEEIREQLDEAEEAKR----FVQQHGNALA 921
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 175 SLEELLRTEQQRLEKNEdqlkiltmELQKKSSELEEMTKLTNNKEVELEELKKVlgeKETLLYENkqfekiAEELKGTEQ 254
Cdd:PRK04863 922 QLEPIVSVLQSDPEQFE--------QLKQDYQQAQQTQRDAKQQAFALTEVVQR---RAHFSYED------AAEMLAKNS 984
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 255 ELIGLLQAREKEV-HDLEIQLTAITTSEQYYSKEVKDLkteleneklknTELTSHCNKLSLENKELTQETSDMTLelknq 333
Cdd:PRK04863 985 DLNEKLRQRLEQAeQERTRAREQLRQAQAQLAQYNQVL-----------ASLKSSYDAKRQMLQELKQELQDLGV----- 1048
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767905786 334 QEDINNNKKQEERMLKQIENLQETETQlRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNK 402
Cdd:PRK04863 1049 PADSGAEERARARRDELHARLSANRSR-RNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
18-454 |
4.05e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 18 RVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKqvsllliQITEKENKMKDLTFLLEesrdKVNQLEEKTKLQSE 97
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEELEEELEELEA-------ELEELREELEKLEKLLQ----LLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 98 nLKQSIEKQHHLTKELEDIkvslqrsvstqKALEEDLQIATKTICQLTEEKETQMEESNKARAAHsfvVTEFETTVCSLE 177
Cdd:COG4717 141 -LAELPERLEELEERLEEL-----------RELEEELEELEAELAELQEELEELLEQLSLATEEE---LQDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 178 ELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKltNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELI 257
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAAL--EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 258 GLL------QAREKEVHDLEI-QLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLEL 330
Cdd:COG4717 284 GLLallfllLAREKASLGKEAeELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 331 ------KNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEEncNNLRKQVENKNKYI 404
Cdd:COG4717 364 qleeleQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--EELEEELEELEEEL 441
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 767905786 405 EELQQENKALKKKGTAESKQLNVYEI--KVNKLELELESAKQKFGEITDTYQ 454
Cdd:COG4717 442 EELEEELEELREELAELEAELEQLEEdgELAELLQELEELKAELRELAEEWA 493
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
176-592 |
4.21e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 176 LEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNnkevELEELKKVLGEKETLLYENKQFEKIAEELKGTEQE 255
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 256 LIGLLQAREKEVHDLEIQLTAITTSEQYYSK------EVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLE 329
Cdd:PRK03918 267 RIEELKKEIEELEEKVKELKELKEKAEEYIKlsefyeEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 330 LKNQQEDINNNKKQEE------RMLKQIENLQETETQLRNE-LEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNK 402
Cdd:PRK03918 347 LKELEKRLEELEERHElyeeakAKKEELERLKKRLTGLTPEkLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 403 YIEELqqenKALKKKGTAESKQLNVYEIK--VNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVE--KAKVIA 478
Cdd:PRK03918 427 AIEEL----KKAKGKCPVCGRELTEEHRKelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELA 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 479 DEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKI------IEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELL-- 550
Cdd:PRK03918 503 EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLkgeiksLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEel 582
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 767905786 551 --SVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLET 592
Cdd:PRK03918 583 gfESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
181-531 |
5.28e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 5.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 181 RTEQQRLEKNEDQLkiLTMELQKKSSELEEMTKLTNN---KEVELEELKKVLGEKETLLYE-NKQFEKIAEELKGTEQEl 256
Cdd:pfam17380 287 RQQQEKFEKMEQER--LRQEKEEKAREVERRRKLEEAekaRQAEMDRQAAIYAEQERMAMErERELERIRQEERKRELE- 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 257 igllQAREKEVhdleiqltaitTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQed 336
Cdd:pfam17380 364 ----RIRQEEI-----------AMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIR-- 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 337 innnKKQEERMLKQIENLQETETQlrnELEYVREELKQKRDEVKckldkseencnNLRKQVENKNKYIEELQQEnkalkk 416
Cdd:pfam17380 427 ----AEQEEARQREVRRLEEERAR---EMERVRLEEQERQQQVE-----------RLRQQEEERKRKKLELEKE------ 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 417 kgtaESKQLNVYEIKVNKLELELESAKQKFgeITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRcqHKI 496
Cdd:pfam17380 483 ----KRDRKRAEEQRRKILEKELEERKQAM--IEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER--RRI 554
|
330 340 350
....*....|....*....|....*....|....*
gi 767905786 497 AEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQ 531
Cdd:pfam17380 555 QEQMRKATEERSRLEAMEREREMMRQIVESEKARA 589
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
362-586 |
5.84e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 362 RNELEYVREELkqkrDEVKCKLDKSEENCNNLRKQVENKNKYiEELQQENKalKKKGTAESKQLNVYEIKVNKLELELES 441
Cdd:TIGR02169 176 LEELEEVEENI----ERLDLIIDEKRQQLERLRREREKAERY-QALLKEKR--EYEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 442 AKQKFGEITDTYQkEIEDKKISEENLLEEVEK--AKVIADEAVKLQKEIDK------RCQHKIAEMVALMEKHKHQYDKI 513
Cdd:TIGR02169 249 LEEELEKLTEEIS-ELEKRLEEIEQLLEELNKkiKDLGEEEQLRVKEKIGEleaeiaSLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 514 IEERD---SELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIE--------------REEKEKLKREAKENTAT 576
Cdd:TIGR02169 328 EAEIDkllAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkefaetrdelkdyREKLEKLKREINELKRE 407
|
250
....*....|
gi 767905786 577 LKEKKDKKTQ 586
Cdd:TIGR02169 408 LDRLQEELQR 417
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
460-580 |
6.83e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 6.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 460 KKISEENLLEEVEKAKVIADEAvklQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG-LYKSKEQEQSSLRASL 538
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEA---KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQkLEKRLLQKEENLDRKL 102
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 767905786 539 EiELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEK 580
Cdd:PRK12704 103 E-LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
78-266 |
8.57e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.04 E-value: 8.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 78 LEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNK 157
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 158 ARAAHSFV--------VTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVL 229
Cdd:COG3883 98 SGGSVSYLdvllgsesFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190
....*....|....*....|....*....|....*..
gi 767905786 230 GEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKE 266
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
311-497 |
8.91e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 39.47 E-value: 8.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 311 KLSLENKELT-----QETSDMTLELKNQQEDINNNKKQEERMLKQiENLQETETQLRNELEYVREELKQKRDEVKCKLDK 385
Cdd:PRK00106 27 KSAKEAAELTllnaeQEAVNLRGKAERDAEHIKKTAKRESKALKK-ELLLEAKEEARKYREEIEQEFKSERQELKQIESR 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767905786 386 SEENCNNLRKQVENKNKYIEELQQENKALKKKgtaeSKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKiSEE 465
Cdd:PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQSLTDK----SKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAE-TEN 180
|
170 180 190
....*....|....*....|....*....|....*..
gi 767905786 466 NLLEEV-----EKAKVIADEAVKLQKEIDKRCQHKIA 497
Cdd:PRK00106 181 KLTHEIatrirEAEREVKDRSDKMAKDLLAQAMQRLA 217
|
|
| |
