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Conserved domains on  [gi|767950108|ref|XP_011533033|]
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glutamate-rich protein 1 isoform X7 [Homo sapiens]

Protein Classification

ICP22 family protein( domain architecture ID 708738)

ICP22 family protein similar to Herpesvirus saimiri transcriptional regulator ICP22 homolog (also known as immediate-early protein) that regulates the transcription of alphaherpesviruses and their host genes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03169 super family cl27451
hypothetical protein; Provisional
 191-335 5.53e-06

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PHA03169:

Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 48.81  E-value: 5.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 191 QPEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEdltrARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PHA03169  47 APPAPTTSGPQVRAVAEQGHRQTESDT---ETAEESRHGEKEERGQGGPS----GSGSESVGSPTPSPSGSAEELASGLS 119

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767950108 271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PHA03169 120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
 
Name Accession Description Interval E-value
PHA03169 PHA03169
hypothetical protein; Provisional
 191-335 5.53e-06

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 48.81  E-value: 5.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 191 QPEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEdltrARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PHA03169  47 APPAPTTSGPQVRAVAEQGHRQTESDT---ETAEESRHGEKEERGQGGPS----GSGSESVGSPTPSPSGSAEELASGLS 119

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767950108 271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PHA03169 120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 132-330 4.76e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 46.14  E-value: 4.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108   132 EQAELEKQQSLLQEKSQRQHTDGTTISKNKKRKLKKKQQIKRKKAAGLAAKAAGVSFMYQPEDSSNEGEGVGEAcEEDGV 211
Cdd:TIGR00927  661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIET-GEEGE 739

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108   212 DTSEEDPTLA---GEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGVDTIEEDL------ 282
Cdd:TIGR00927  740 EVEDEGEGEAegkHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDehegqs 819

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 767950108   283 -TRAGEEDGKDTREEDGADASEEDPTWAGEE--------EGADSGEEDGADASEEDD 330
Cdd:TIGR00927  820 eTQADDTEVKDETGEQELNAENQGEAKQDEKgvdggggsDGGDSEEEEEEEEEEEEE 876
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 251-331 3.02e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 43.24  E-value: 3.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 251 ADASEEDPTPAGEEDVKDAREEDGvdtiEEDLTRAGEEDGKDTREEDGADASEEDPTwAGEEEGADSGEEDGADASEEDD 330
Cdd:COG4547  208 AEELGEDEDEEDEDDEDDSGEQEE----DEEDGEDEDEESDEGAEAEDAEASGDDAE-EGESEAAEAESDEMAEEAEGED 282


                 .
gi 767950108 331 T 331
Cdd:COG4547  283 S 283
TFIIF_alpha pfam05793
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation ...
 193-336 8.56e-03

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II.


Pssm-ID: 310411 [Multi-domain]  Cd Length: 528  Bit Score: 38.78  E-value: 8.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108  193 EDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDltRARQEEGADASEEDPTPAGEEDVKDAREE 272
Cdd:pfam05793 197 EETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKKKKKKK--KLAKNKKKLDDDKKKKRGGDDDAFEYDSD 274

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767950108  273 DGVD-TIEEDLTRAGEEDGKDTREEDGADASEEDPtwAGEEEGADSGEEDGADASEEDDTITNEK 336
Cdd:pfam05793 275 DGDDeGREEDYISDSSASGNDPEEREDKLSPEEPA--KGEIEQSDDSEESEEEKNEEEGKLSKKG 337
 
Name Accession Description Interval E-value
PHA03169 PHA03169
hypothetical protein; Provisional
 191-335 5.53e-06

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 48.81  E-value: 5.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 191 QPEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEdltrARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PHA03169  47 APPAPTTSGPQVRAVAEQGHRQTESDT---ETAEESRHGEKEERGQGGPS----GSGSESVGSPTPSPSGSAEELASGLS 119

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767950108 271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PHA03169 120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
PHA03169 PHA03169
hypothetical protein; Provisional
 192-365 2.26e-05

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 46.89  E-value: 2.26e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 192 PEDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDltraRQEEGADASEEDPTPAGEEDVKDARE 271
Cdd:PHA03169 105 PSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPES----HNPSPNQQPSSFLQPSHEDSPEEPEP 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 272 EDGVDtiEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGeeDGADASEEDDTITNEKAHSIlNFLKSTQEMY 351
Cdd:PHA03169 181 PTSEP--EPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSP--NTQQAVEHEDEPTEPEREGP-PFPGHRSHSY 255

                        170
                 ....*....|....
gi 767950108 352 FYDAWGRPTVMPGV 365
Cdd:PHA03169 256 TVVGWKPSTRPGGV 269
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 132-330 4.76e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 46.14  E-value: 4.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108   132 EQAELEKQQSLLQEKSQRQHTDGTTISKNKKRKLKKKQQIKRKKAAGLAAKAAGVSFMYQPEDSSNEGEGVGEAcEEDGV 211
Cdd:TIGR00927  661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIET-GEEGE 739

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108   212 DTSEEDPTLA---GEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGVDTIEEDL------ 282
Cdd:TIGR00927  740 EVEDEGEGEAegkHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDehegqs 819

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 767950108   283 -TRAGEEDGKDTREEDGADASEEDPTWAGEE--------EGADSGEEDGADASEEDD 330
Cdd:TIGR00927  820 eTQADDTEVKDETGEQELNAENQGEAKQDEKgvdggggsDGGDSEEEEEEEEEEEEE 876
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 197-336 9.84e-05

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 45.16  E-value: 9.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108  197 NEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGVD 276
Cdd:PTZ00341  930 NQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEE 1009

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767950108  277 TIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGE-EEGADSG-EEDGADASEEDDTITNEK 336
Cdd:PTZ00341 1010 NVEENIEENVEEYDEENVEEVEENVEEYDEENVEEiEENAEENvEENIEENIEEYDEENVEE 1071
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 251-331 3.02e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 43.24  E-value: 3.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 251 ADASEEDPTPAGEEDVKDAREEDGvdtiEEDLTRAGEEDGKDTREEDGADASEEDPTwAGEEEGADSGEEDGADASEEDD 330
Cdd:COG4547  208 AEELGEDEDEEDEDDEDDSGEQEE----DEEDGEDEDEESDEGAEAEDAEASGDDAE-EGESEAAEAESDEMAEEAEGED 282


                 .
gi 767950108 331 T 331
Cdd:COG4547  283 S 283
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 193-335 3.46e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 43.45  E-value: 3.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108   193 EDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVkDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREE 272
Cdd:TIGR00927  756 ETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDG-EMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGE 834

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767950108   273 DGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:TIGR00927  835 QELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 207-316 4.34e-04

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 42.86  E-value: 4.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 207 EEDGVDTSEEDPtlaGEEDVKDTREEDGADASEEDltrarQEEGADASEEDPTPAGEEDvkDAREEDGVDTIEEDLtrag 286
Cdd:COG4547  209 EELGEDEDEEDE---DDEDDSGEQEEDEEDGEDED-----EESDEGAEAEDAEASGDDA--EEGESEAAEAESDEM---- 274

                         90       100       110
                 ....*....|....*....|....*....|
gi 767950108 287 EEDGKDTREEDGADASEEDPTWAGEEEGAD 316
Cdd:COG4547  275 AEEAEGEDSEEPGEPWRPNAPPPDDPADPD 304
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 209-357 6.43e-04

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 42.47  E-value: 6.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108  209 DGVDTSEEdptlageEDVKDTREEDGADASEEDLTRAR--QEEGADASEE---DPTPAGEEDVKDAREEDGVDTIEEDLT 283
Cdd:PTZ00341  426 DMLDGSED-------ESVEDNEEEHSGDANEEELSVDEhvEEHNADDSGEqqsDDESGEHQSVNEIVEEQSVNEHVEEPT 498

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108  284 RAgeedgkDTREEDGADASEEDPT--WAGEEEGADSG-EEDGADAS--EEDDTITNEKAHSILNFLKSTQEM-------- 350
Cdd:PTZ00341  499 VA------DIVEQETVDEHVEEPAvdENEEQQTADEHvEEPTIAEEhvEEEISTAEEHIEEPASDVQQDSEAaptieipd 572


                  ....*...
gi 767950108  351 -YFYDAWG 357
Cdd:PTZ00341  573 tLFYDILG 580
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 192-337 7.74e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.29  E-value: 7.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108   192 PEDSSNEGEGVGEACEEDGVDTSEEDptlAGEEDVKDTREEDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDARE 271
Cdd:TIGR00927  686 PAERKGEQEGEGEIEAKEADHKGETE---AEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRK 762

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767950108   272 EDGVDTIEEDLTRAGEEDGKDTREEDGADASEEdptwaGEEEGADSGEEDGADASEEDDTITNEKA 337
Cdd:TIGR00927  763 ETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE-----GAEGKVEHEGETEAGEKDEHEGQSETQA 823
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 204-312 8.99e-04

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 42.08  E-value: 8.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108  204 EACEEDGVDTSEEDPTLAGEEDVKDTRE--EDGADASEEDLTRARQEEGADASEEDPTPAGEEDVKDAREEDGV---DTI 278
Cdd:PTZ00341 1020 EEYDEENVEEVEENVEEYDEENVEEIEEnaEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEeieENV 1099

                          90       100       110
                  ....*....|....*....|....*....|....
gi 767950108  279 EEDLTRAGEEDGKDTREEDGADASEEDPTWAGEE 312
Cdd:PTZ00341 1100 EENVEENAEENAEENAEENAEEYDDENPEEHNEE 1133
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 192-331 1.46e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 41.43  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 192 PEDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDlTRARQEEGADASEedptpAGEEDVKDARE 271
Cdd:PRK12678  73 PAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAP-EAAQARERRERGE-----AARRGAARKAG 146

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 272 EDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDT 331
Cdd:PRK12678 147 EGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRR 206
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 231-337 1.52e-03

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 41.32  E-value: 1.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 231 EEDGADASEEdltrarqEEGADASEEDPTPAGEEDVKDAREEDGVDTIEEDLTRAGEEDgkDTREEDGADASEEDptwaG 310
Cdd:COG4547  208 AEELGEDEDE-------EDEDDEDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDA--EEGESEAAEAESDE----M 274

                         90       100
                 ....*....|....*....|....*..
gi 767950108 311 EEEGADSGEEDGADASEEDDTITNEKA 337
Cdd:COG4547  275 AEEAEGEDSEEPGEPWRPNAPPPDDPA 301
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 193-303 2.14e-03

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 40.93  E-value: 2.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108  193 EDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASE--EDLTRARQEEGADASEEDPTPAGEEDVKDAR 270
Cdd:PTZ00341 1024 EENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEeiEENIEENIEENVEENVEENVEEIEENVEENV 1103

                          90       100       110
                  ....*....|....*....|....*....|...
gi 767950108  271 EEDGVDTIEEDLTRAGEEDGKDTREEDGADASE 303
Cdd:PTZ00341 1104 EENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 195-335 2.58e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 40.35  E-value: 2.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 195 SSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGA--DASEEDLTRARQEE-GADASEEDptpagEEDVKDARE 271
Cdd:PRK13108 322 EPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAveETSEADIEREQPGDlAGQAPAAH-----QVDAEAASA 396

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767950108 272 EDGVDTIEEDLTRAGEEDGKDTREEDGADASEEDPTwAGEEEGADSGEEDGADASEEDDTITNE 335
Cdd:PRK13108 397 APEEPAALASEAHDETEPEVPEKAAPIPDPAKPDEL-AVAGPGDDPAEPDGIRRQDDFSSRRRR 459
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 132-345 2.63e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 40.36  E-value: 2.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 132 EQAELEKQQSLLQEKSQRQHTDGTTISKNKKRKLKKKQQIKRKKAAGLAAKAAGVSFMYQPEDSSNEGEGVGEACEEDGV 211
Cdd:PRK05901   9 ELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108 212 DTSEEDPTLAGEEDVKDTREEDGADASEEDLTRARQEEGADA-SEEDPTPAGEEDVKDAREEDGVDTIEEDltragEEDG 290
Cdd:PRK05901  89 KAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQAdDDDDDDDDDDLDDDDIDDDDDDEDDDED-----DDDD 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 767950108 291 KDTREEDGADASEEDPTWAGEEEGADSGEEDGADASEEDDTITNEKAHSILNFLK 345
Cdd:PRK05901 164 DVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATADPVKAYLK 218
TFIIF_alpha pfam05793
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation ...
 193-336 8.56e-03

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II.


Pssm-ID: 310411 [Multi-domain]  Cd Length: 528  Bit Score: 38.78  E-value: 8.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767950108  193 EDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDltRARQEEGADASEEDPTPAGEEDVKDAREE 272
Cdd:pfam05793 197 EETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKKKKKKK--KLAKNKKKLDDDKKKKRGGDDDAFEYDSD 274

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767950108  273 DGVD-TIEEDLTRAGEEDGKDTREEDGADASEEDPtwAGEEEGADSGEEDGADASEEDDTITNEK 336
Cdd:pfam05793 275 DGDDeGREEDYISDSSASGNDPEEREDKLSPEEPA--KGEIEQSDDSEESEEEKNEEEGKLSKKG 337
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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