|
Name |
Accession |
Description |
Interval |
E-value |
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1-1066 |
0e+00 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 1777.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 1 MESKAWESNNEDLLSSSGVTSNGGSSSSFFVSSIRGTIIENTSSAGTLTQVPFFPKYEVELDSPRKIIPSPGKEHFERVL 80
Cdd:pfam15921 1 MEPKPCESNNEDLLSSSGITSNRGSSSPFFVSSIRGTIIENTSSTGTFTQIPIFPKYEVELDSPRKIIAYPGKEHIERVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL 160
Cdd:pfam15921 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 161 KEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTLHFRSLGSAISKILRELDTEISYLKGRI 240
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 241 FPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLS 320
Cdd:pfam15921 241 FPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 321 DLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
Cdd:pfam15921 321 DLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 401 KRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKV 480
Cdd:pfam15921 401 KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 481 VEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEK 560
Cdd:pfam15921 481 VEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEK 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 561 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNA 640
Cdd:pfam15921 561 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNA 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 641 GSERLRAVKDIKQERDQLLNEVKTSRSELNNLS----------------------------------------------- 673
Cdd:pfam15921 641 GSERLRAVKDIKQERDQLLNEVKTSRNELNSLSedyevlkrnfrnkseemetttnklkmqlksaqseleqtrntlksmeg 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 674 ----AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQER 749
Cdd:pfam15921 721 sdghAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQER 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 750 RLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDIKELQGPGYTSNSSLKPRLLQPASVTRSHSNVPSSQ 829
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQ 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 830 STASFLSHHSTKANTLKEDPTRDLKQLLQELRSVINEEPAVSLSKTEEDGRT-SLGALyvavEDRVRDCITESSLRSDMC 908
Cdd:pfam15921 881 STASFLSHHSRKTNALKEDPTRDLKQLLQELRSVINEEPTVQLSKAEDKGRApSLGAL----DDRVRDCIIESSLRSDIC 956
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 909 HRSNNSLRdsTEGSKSSETLSREPVTLHAGDREDPSGCFTFTSAASPSVKNSASRSFNSSPKKSPVHSLLTSSVEGSIGS 988
Cdd:pfam15921 957 HSSSNSLQ--TEGSKSSETCSREPVLLHAGELEDPSSCFTFPSTASPSVKNSASRSFHSSPKKSPVHSLLTSSAEGSIGS 1034
|
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767931831 989 TSQYRSAKPIHSSDSVKDSQSPPIETTGKTCRKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK 1066
Cdd:pfam15921 1035 SSQYRSAKTIHSPDSVKDSQSLPIETTGKTCRKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK 1112
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-793 |
6.58e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.26 E-value: 6.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 77 ERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMAD----IRRRESQSQEDLrNQLQNTVH 152
Cdd:TIGR02168 199 ERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEeleeLTAELQELEEKL-EELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 153 ELEAAKCLKEDMLKDSNTQIEQLRKMmlshEGVLQEIRSILVDFEEASGKKICEHDSMSTLhfrslgsaISKILRELDTE 232
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQ----KQILRERLANLERQLEELEAQLEELESKLDE--------LAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 233 ISYLKGRIFPVEDQLEALKSESQNkIELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIQSQMEI-IQEQA 308
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEE-LESRLEELEEQLETLrskVAQLELQIASLNNEIERLEARLERLEDRRERlQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 309 RNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELE---KQLVLANSELTEARTERDQFSQESGNLDDQLQKLLaD 385
Cdd:TIGR02168 425 ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEelrEELEEAEQALDAAERELAQLQARLDSLERLQENLE-G 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 386 LHKREKELSLEKEQNK----RLWDR---DTGNSITIDHLRRELDNrNMEVQRLEALLKALKSECQGQMERQM-------- 450
Cdd:TIGR02168 504 FSEGVKALLKNQSGLSgilgVLSELisvDEGYEAAIEAALGGRLQ-AVVVENLNAAKKAIAFLKQNELGRVTflpldsik 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 451 -AAIQGKN----ESLEKVSSLTAQLESTKEMLRKVVEEL-------------TAKKMTLESSERTIS------------- 499
Cdd:TIGR02168 583 gTEIQGNDreilKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddldnaLELAKKLRPGYRIVTldgdlvrpggvit 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 500 ----DLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN----VQTECEALKLQMTEKDKVIEILRQQI 571
Cdd:TIGR02168 663 ggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEeleqLRKELEELSRQISALRKDLARLEAEV 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 572 ENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKilkdkkdAKIRELEARVSDLELEkvklVNAGSERLRAVKDI 651
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE-------AEIEELEAQIEQLKEE----LKALREALDELRAE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 652 KQERDQLLNEVKTSRSELnnlsamkvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVA 731
Cdd:TIGR02168 812 LTLLNEEAANLRERLESL------------ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767931831 732 TEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQ--RQEQESVRLKLQHTLD 793
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAqlELRLEGLEVRIDNLQE 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
263-789 |
3.72e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 3.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 263 QQHQDRIEQLISEHEVEITGLTEKASSARsQANSIQSQMEIIQEQARnqnsmyMRQLSDLESTVSQLRSELREAkrmyED 342
Cdd:COG1196 185 EENLERLEDILGELERQLEPLERQAEKAE-RYRELKEELKELEAELL------LLKLRELEAELEELEAELEEL----EA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 343 KTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELD 422
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 423 NRNMEVQRLEALLKALKSECQgqmERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLT 502
Cdd:COG1196 334 ELEEELEELEEELEEAEEELE---EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 503 TSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHG 582
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 583 RTAGAMQVEKAQLE---------KEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKV-KLVNAGSERLRAVKDIK 652
Cdd:COG1196 491 ARLLLLLEAEADYEgflegvkaaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVvEDDEVAAAAIEYLKAAK 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 653 QERDQLLNEVKTSRSELNNLSAMKVAMG-----------MQKQITAKRGQIDALQSKIQFLEEA----MTNANKEKHFLK 717
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAALARGAIGaavdlvasdlrEADARYYVLGDTLLGRTLVAARLEAalrrAVTLAGRLREVT 650
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767931831 718 EEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 789
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
330-669 |
6.05e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 6.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 330 RSELREAkrmyEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTG 409
Cdd:TIGR02168 676 RREIEEL----EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 410 NSITIDHLRRELDNRNMEVQRLEALLKALKSEcQGQMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLRKVVEELTAKK 488
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAE-IEELEAQIEQLKEELKALREaLDELRAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 489 MTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGD----HLRNVQTECEALKLQMTEKDKVI 564
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleeALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 565 EILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR-RMELKELKILKDKKDAKIRELEARVSDLELEKVKL--VNAG 641
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpVNLA 990
|
330 340
....*....|....*....|....*....
gi 767931831 642 S-ERLRAVKDIKQERDQLLNEVKTSRSEL 669
Cdd:TIGR02168 991 AiEEYEELKERYDFLTAQKEDLTEAKETL 1019
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
109-703 |
2.67e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 74.31 E-value: 2.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 109 RQSVID--LQTKLQEMQMER--DAMADIRRRESQSQEDLRnQLQNTVHELEAAKCLK-----EDMLKDSNTQIEQLRKMM 179
Cdd:PRK02224 151 RQDMIDdlLQLGKLEEYRERasDARLGVERVLSDQRGSLD-QLKAQIEEKEEKDLHErlnglESELAELDEEIERYEEQR 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 180 LSHEGVLQEIRSILVDFEEasgkkicEHDSMSTLH--FRSLGSAISKILRELDT---EISYLKGRIFPVEDQLEALKSE- 253
Cdd:PRK02224 230 EQARETRDEADEVLEEHEE-------RREELETLEaeIEDLRETIAETEREREElaeEVRDLRERLEELEEERDDLLAEa 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 254 -----SQNKIELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQArnqnsmymrqlSDLEST 325
Cdd:PRK02224 303 glddaDAEAVEARREELEDRDEELrdrLEECRVAAQAHNEEAESLREDADDLEERAEELREEA-----------AELESE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 326 VSQLRSELREAkrmyEDKTEELEKQLVLANSELTEARTERDqfsqESGNLDDQLQKLLADLHKREKELSLE-------KE 398
Cdd:PRK02224 372 LEEAREAVEDR----REEIEELEEEIEELRERFGDAPVDLG----NAEDFLEELREERDELREREAELEATlrtarerVE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 399 QNKRLWDR----DTGNSITIDHLRRELDNRNMEVQRLEALLKALKSEcqgqmerqMAAIQGKNESLEKVSSLTAQLESTK 474
Cdd:PRK02224 444 EAEALLEAgkcpECGQPVEGSPHVETIEEDRERVEELEAELEDLEEE--------VEEVEERLERAEDLVEAEDRIERLE 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 475 EMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQE-------LQHLKNEGDHLRNVQ 547
Cdd:PRK02224 516 ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEvaelnskLAELKERIESLERIR 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 548 TECEALklqmTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMElkELKILKDKKDAKIRELEARV 627
Cdd:PRK02224 596 TLLAAI----ADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE--EAREDKERAEEYLEQVEEKL 669
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767931831 628 SDLElekvklvnagserlravkdikQERDQLLNEVKTSRSELNNLSAMkvamgmqkqitakRGQIDALQSKIQFLE 703
Cdd:PRK02224 670 DELR---------------------EERDDLQAEIGAVENELEELEEL-------------RERREALENRVEALE 711
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
224-764 |
5.26e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 73.52 E-value: 5.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 224 KILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQqhqdrIEQLISEHEVEITGLTEKASSARSQANSIQSQMEI 303
Cdd:TIGR04523 131 KQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEE-----LENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSN 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 304 IQEQARNQNSMyMRQLSDLESTVSQLRSELREAKRMYEDKTEEL---EKQLVLANSELTEARTERDQFSQESGNLDDQLQ 380
Cdd:TIGR04523 206 LKKKIQKNKSL-ESQISELKKQNNQLKDNIEKKQQEINEKTTEIsntQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 381 KLLADLHKREKELSLEKEQNKRLWDRDTGNSIT-----IDHLRRELDNRNMEVQRLEALLKALKSEcqgqmerqmaaiqg 455
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEQDWNKELKSELKnqekkLEEIQNQISQNNKIISQLNEQISQLKKE-------------- 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 456 KNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQH 535
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 536 LKNE----GDHLRNVQTECEALKLQMTEKDKVIEILRQQIEnmtqlvgqhgrtagamqvekaQLEKEINDRRMELKELKI 611
Cdd:TIGR04523 431 LKETiiknNSEIKDLTNQDSVKELIIKNLDNTRESLETQLK---------------------VLSRSINKIKQNLEQKQK 489
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 612 LKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMKVAMGMQKQITAKRGQ 691
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKE 569
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767931831 692 IDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDK 764
Cdd:TIGR04523 570 IEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNK 642
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
418-800 |
3.90e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 3.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 418 RRELDNRNMEVQRLEALLKALksecqgqmERQMAAIQGKNESLEKVSSLTAQLE------STKEMLRKVvEELTAKKMTL 491
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNEL--------ERQLKSLERQAEKAERYKELKAELRelelalLVLRLEELR-EELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 492 ESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnvqteCEALKLQMTEKDKVIEILRQQI 571
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE----------ISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 572 ENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLElekvklvnAGSERLRAvkdi 651
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE--------EQLETLRS---- 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 652 kqERDQLLNEVKTSRSELNNLSAmkvamgmqkQITAKRGQIDALQSKIQFLEEAMTNANKEKhfLKEEKSKLSQELSTVA 731
Cdd:TIGR02168 387 --KVAQLELQIASLNNEIERLEA---------RLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQ 453
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767931831 732 TEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQE--QESVRLKLQHTLDIKELQGP 800
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfSEGVKALLKNQSGLSGILGV 524
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
261-787 |
4.16e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 4.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 261 LLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRmY 340
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE-L 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 341 EDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELsLEKEQNKRLWDRDtgnsitIDHLRRE 420
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL-LEAEAELAEAEEE------LEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 421 LDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISD 500
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 501 LTTSLQEKERAIEATNAEITKLRSRVDLKLQ--ELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLV 578
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEaeADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 579 GQHGRTAGAMQVEKA-QLEKEINDRR--------MELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGS------- 642
Cdd:COG1196 548 LQNIVVEDDEVAAAAiEYLKAAKAGRatflpldkIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDtllgrtl 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 643 --ERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMKVAMGMQKQITAKRGQIDALQSKIQfLEEAMTNANKEKHFLKEEK 720
Cdd:COG1196 628 vaARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER-LAEEELELEEALLAEEEEE 706
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767931831 721 SKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLK 787
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-798 |
8.66e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 8.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 251 KSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSA------RSQANSIQSQMEIIQEQARNQNsmyMRQLSDLES 324
Cdd:TIGR02168 174 RKETERKLERT-RENLDRLEDILNELERQLKSLERQAEKAerykelKAELRELELALLVLRLEELREE---LEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 325 TVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL---LADLHKREKELS--LEKEQ 399
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILrerLANLERQLEELEaqLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 400 NKRLWDRDTGNSIT--IDHLRRELDNRNMEVQRLEALLKALKS---ECQGQMERQMAAIQGKNESLE----KVSSLTAQL 470
Cdd:TIGR02168 330 SKLDELAEELAELEekLEELKEELESLEAELEELEAELEELESrleELEEQLETLRSKVAQLELQIAslnnEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 471 ESTKEMLRKVVEELTAKKMTLESSE-----RTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN 545
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAElkelqAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 546 vqtECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEK---AQLEKEINDRRmelkeLKILKDKKDAKIRE 622
Cdd:TIGR02168 490 ---RLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEgyeAAIEAALGGRL-----QAVVVENLNAAKKA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 623 LEA-------RVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSAM----------KVAMGMQKQI 685
Cdd:TIGR02168 562 IAFlkqnelgRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddlDNALELAKKL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 686 TA-------------KRGQI----DALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQE 748
Cdd:TIGR02168 642 RPgyrivtldgdlvrPGGVItggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL 721
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 767931831 749 RRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDIKELQ 798
Cdd:TIGR02168 722 EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
219-509 |
1.19e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 1.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 219 GSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQ------NKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARS 292
Cdd:TIGR02169 225 GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISelekrlEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 293 QANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEkqlvlanseltEARTERDQFSQES 372
Cdd:TIGR02169 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA-----------ELKEELEDLRAEL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 373 GNLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAA 452
Cdd:TIGR02169 374 EEVDKEFAETRDELKDYREKLEKLKRE--------------INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 767931831 453 IQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKE 509
Cdd:TIGR02169 440 EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
389-749 |
1.57e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.47 E-value: 1.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 389 REKELSLEK-EQNKRLWDRdtgNSITIDHLRRELDNrnMEVQRLEAL-LKALKSECQgqmERQMAAIQGKNESLEK-VSS 465
Cdd:TIGR02169 170 RKKEKALEElEEVEENIER---LDLIIDEKRQQLER--LRREREKAErYQALLKEKR---EYEGYELLKEKEALERqKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 466 LTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEK--------ERAIEATNAEITKLRSRVDLKLQELQHLK 537
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 538 NEgdhLRNVQTECEALKLQMTEKDKVIEilrqqienmtqlvgqhgrtagAMQVEKAQLEKEINDRRMELKELKILKDKKD 617
Cdd:TIGR02169 322 ER---LAKLEAEIDKLLAEIEELEREIE---------------------EERKRRDKLTEEYAELKEELEDLRAELEEVD 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 618 AKIRELEARVSDLELEKVKLVnagserlRAVKDIKQERDQLLNEVKTSRSELNNLSA-MKVAMGMQKQI----TAKRGQI 692
Cdd:TIGR02169 378 KEFAETRDELKDYREKLEKLK-------REINELKRELDRLQEELQRLSEELADLNAaIAGIEAKINELeeekEDKALEI 450
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 767931831 693 DALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQER 749
Cdd:TIGR02169 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR 507
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
444-744 |
2.24e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 2.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 444 GQMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKL 522
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENrLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 523 RSRVDLKLQELQHLKNE---------GDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQlvgqhgrtagamqvEKA 593
Cdd:TIGR02169 764 EARIEELEEDLHKLEEAlndlearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL--------------EKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 594 QLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLS 673
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767931831 674 AmkvamgmqkQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSqELSTVATEKNKMAGELEVL 744
Cdd:TIGR02169 910 A---------QIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL-SLEDVQAELQRVEEEIRAL 970
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
77-762 |
3.34e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 3.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 77 ERVLEEYSHQVKDLQRRLNES----NELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIeqllEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 153 ELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKkicehdsmstlhFRSLGSAISKILRELDTe 232
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE------------FAETRDELKDYREKLEK- 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 233 isyLKGRIFPVEDQLEALKSESQNKIELLLQQHQD--RIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARN 310
Cdd:TIGR02169 397 ---LKREINELKRELDRLQEELQRLSEELADLNAAiaGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 311 QNSMY----------MRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLAnSELTEARtERDQFSQES--GNL--- 375
Cdd:TIGR02169 474 LKEEYdrvekelsklQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTV-AQLGSVG-ERYATAIEVaaGNRlnn 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 376 ----DDQLQKLLADLHKREKE-----LSLEKEQNKRLWD------------------------------RDTGNSITIDH 416
Cdd:TIGR02169 552 vvveDDAVAKEAIELLKRRKAgratfLPLNKMRDERRDLsilsedgvigfavdlvefdpkyepafkyvfGDTLVVEDIEA 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 417 LRRELDNRNMEVqrLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSER 496
Cdd:TIGR02169 632 ARRLMGKYRMVT--LEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQ 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 497 TISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQ 576
Cdd:TIGR02169 710 ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE---IENVKSELKELEARIEELEEDLHKLEEALNDLEA 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 577 LVGQH-----GRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKvklvnagSERLRAVKDI 651
Cdd:TIGR02169 787 RLSHSripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI-------KSIEKEIENL 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 652 KQERDQLLNEVKTSRSELNNLSAMKVamGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVA 731
Cdd:TIGR02169 860 NGKKEELEEELEELEAALRDLESRLG--DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE 937
|
730 740 750
....*....|....*....|....*....|.
gi 767931831 732 TEKNKMAGELEVLRSqERRLKEKVTNMEVAL 762
Cdd:TIGR02169 938 DPKGEDEEIPEEELS-LEDVQAELQRVEEEI 967
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
121-789 |
1.12e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 121 EMQMER-DAMADIRRRESQSQEDLRNQ------LQNTVHELEAAKCLKEdmLKDSNTQIEQLRKMMLSHEGVLQEIRSIL 193
Cdd:TIGR02169 183 EENIERlDLIIDEKRQQLERLRREREKaeryqaLLKEKREYEGYELLKE--KEALERQKEAIERQLASLEEELEKLTEEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 194 VDFEEASGKKICEHDSMSTlHFRSLGS----AISKILRELDTEISYLKGRIFPVEDQLEALKSESQnKIELLLQQHQDRI 269
Cdd:TIGR02169 261 SELEKRLEEIEQLLEELNK-KIKDLGEeeqlRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-KLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 270 EQL---ISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQA---RNQNSMYMRQLSDLESTVSQLRSELR---EAKRMY 340
Cdd:TIGR02169 339 EELereIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFaetRDELKDYREKLEKLKREINELKRELDrlqEELQRL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 341 EDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEqnkrlwdrdtgnsiTIDHLRRE 420
Cdd:TIGR02169 419 SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE--------------EYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 421 LDNRNMEVQRLEALLKALKSECQGQMerqmAAIQGKNESLEKVSSLTAQLESTKEMLRKVVE--------------ELTA 486
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVRGGR----AVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagnrlnnvvvedDAVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 487 K--------------------KMTLESSERTIS----------DLTTSLQEKERA-------------IEATNAEITKLR 523
Cdd:TIGR02169 561 KeaiellkrrkagratflplnKMRDERRDLSILsedgvigfavDLVEFDPKYEPAfkyvfgdtlvvedIEAARRLMGKYR 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 524 -----------------------SRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQ 580
Cdd:TIGR02169 641 mvtlegelfeksgamtggsraprGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 581 HGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIK-QERDQLL 659
Cdd:TIGR02169 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAEL 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 660 NEVKTSRSELnnlsamkvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAG 739
Cdd:TIGR02169 801 SKLEEEVSRI------------EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE 868
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 767931831 740 ELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 789
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
202-672 |
1.59e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.96 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 202 KKICEHDSMST--LHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRIEQ-------- 271
Cdd:TIGR04523 208 KKIQKNKSLESqiSELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE-QNKIKKQLSEKQKELEQnnkkikel 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 272 --LISEHEVEITGLTEKASS-----ARSQANSIQSQMEIIQEQARNQN---SMYMRQLSDLESTVSQLRSELREAKRMYE 341
Cdd:TIGR04523 287 ekQLNQLKSEISDLNNQKEQdwnkeLKSELKNQEKKLEEIQNQISQNNkiiSQLNEQISQLKKELTNSESENSEKQRELE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 342 DKTEELEK----------QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNkrlwdrdTGNS 411
Cdd:TIGR04523 367 EKQNEIEKlkkenqsykqEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI-------IKNN 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 412 ITIDHLRRELDNRNMEVQRLEALLKALKsecqgqmerqmaaiqgkneslEKVSSLTAQLESTKEMLRKVVEELTAKKMTL 491
Cdd:TIGR04523 440 SEIKDLTNQDSVKELIIKNLDNTRESLE---------------------TQLKVLSRSINKIKQNLEQKQKELKSKEKEL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 492 ESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEcEALKLQMTEKDKVIEILRQQI 571
Cdd:TIGR04523 499 KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK-ENLEKEIDEKNKEIEELKQTQ 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 572 ENMTqlvgqhgRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSErlravkdI 651
Cdd:TIGR04523 578 KSLK-------KKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNK-------L 643
|
490 500
....*....|....*....|.
gi 767931831 652 KQERDQLLNEVKTSRSELNNL 672
Cdd:TIGR04523 644 KQEVKQIKETIKEIRNKWPEI 664
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
285-754 |
5.91e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.44 E-value: 5.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 285 EKASSARSQANSIQSQMEIIQEQARNQ-----NSMYMRQLSDLESTVSQLRSELREakrmYEDKTEELEKQLVLANSELT 359
Cdd:PRK02224 169 ERASDARLGVERVLSDQRGSLDQLKAQieekeEKDLHERLNGLESELAELDEEIER----YEEQREQARETRDEADEVLE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 360 EARTERDQFSQESGNLDDQLQKLLADLHKRE---KELSLEKEQNKRLWDRdtgnsitIDHLRRELDNRNMEVQRLEALLK 436
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIAETEREREelaEEVRDLRERLEELEEE-------RDDLLAEAGLDDADAEAVEARRE 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 437 AL---KSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSERTISDlttslqeKERAIE 513
Cdd:PRK02224 318 ELedrDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE---LEEAREAVED-------RREEIE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 514 ATNAEITKLRSRVDLKLQELQHLKnegDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKA 593
Cdd:PRK02224 388 ELEEEIEELRERFGDAPVDLGNAE---DFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGS 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 594 QLEKEINDRRmelkelkilkdkkdAKIRELEARVSDLELEkvklVNAGSERLRAVKDIKQERDQlLNEVKTSRSELNNLS 673
Cdd:PRK02224 465 PHVETIEEDR--------------ERVEELEAELEDLEEE----VEEVEERLERAEDLVEAEDR-IERLEERREDLEELI 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 674 AMKVAMGMQK--QITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMA------GELEVLR 745
Cdd:PRK02224 526 AERRETIEEKreRAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLErirtllAAIADAE 605
|
....*....
gi 767931831 746 SQERRLKEK 754
Cdd:PRK02224 606 DEIERLREK 614
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
467-689 |
1.04e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 1.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 467 TAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV 546
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 547 QTECEAL------KLQMTEKDKVIEILRQQiENMTQLVgqhgRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKI 620
Cdd:COG4942 99 LEAQKEElaellrALYRLGRQPPLALLLSP-EDFLDAV----RRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767931831 621 RELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMKVAMGMQKQITAKR 689
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
226-759 |
1.52e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 226 LRELDTEISYLKGRIFPVEDQLEALKSEsqnkiELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQ 305
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAE-----EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 306 EQARNQNSMYMRQLSDLESTVSQLrSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAEL-AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 386 LHKREKELSLEKEQNKRLwdrdtgnSITIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSS 465
Cdd:COG1196 416 LERLEEELEELEEALAEL-------EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 466 LTAQLESTKEMLRKVVEEL-TAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 544
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLeGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 545 NVQTECEALKLQMTEKDKVIEILRQQIENMTQLVG----QHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKI 620
Cdd:COG1196 569 AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvasdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 621 RELEARVsdLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMKVAMGMQKQITAKRGQIDALQSKIQ 700
Cdd:COG1196 649 VTLEGEG--GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 767931831 701 FLEEAMTNANKEKHFLKEEksklsQELSTVATEKNKMAGELEVLRSQERRLKEKVTNME 759
Cdd:COG1196 727 EEQLEAEREELLEELLEEE-----ELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
567-766 |
3.69e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 3.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 567 LRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR 646
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 647 AV-KDIKQERDQLLNEVKTSRSELNNLSAMK-VAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLS 724
Cdd:COG4942 112 ALyRLGRQPPLALLLSPEDFLDAVRRLQYLKyLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALE 191
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 767931831 725 QE-------LSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKAS 766
Cdd:COG4942 192 ALkaerqklLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
314-782 |
5.45e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.08 E-value: 5.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 314 MYMRQLSDLESTVSQLRSELREAKRMYEDKtEELEKQLVLANSELTEARTERDQFSQEsgnldDQLQKLLADLHKREKEL 393
Cdd:COG4717 68 LNLKELKELEEELKEAEEKEEEYAELQEEL-EELEEELEELEAELEELREELEKLEKL-----LQLLPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 394 SLEKEQNKRLWDRDTgnsiTIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMaaiqgkNESLEKVSSLTAQLESt 473
Cdd:COG4717 142 AELPERLEELEERLE----ELRELEEELEELEAELAELQEELEELLEQLSLATEEEL------QDLAEELEELQQRLAE- 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 474 kemLRKVVEELTAKKMTLESSERTISDLTTSLQEKERaIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEAL 553
Cdd:COG4717 211 ---LEEELEEAQEELEELEEELEQLENELEAAALEER-LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 554 KLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELE 633
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 634 KV--------KLVNAGS-ERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMKVAMgmqkqitAKRGQIDALQSKIQFLEE 704
Cdd:COG4717 367 ELeqeiaallAEAGVEDeEELRAALEQAEEYQELKEELEELEEQLEELLGELEEL-------LEALDEEELEEELEELEE 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 705 AMTNANKEKHFLKEEKSKLSQELSTVATEknkmaGELEVLRSQERRLKEKVTnmEVALDKASLQFAEC--QDIIQRQEQE 782
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEQLEED-----GELAELLQELEELKAELR--ELAEEWAALKLALEllEEAREEYREE 512
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
223-759 |
9.45e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 9.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 223 SKILRELDTEISYLKG----------RIFPVEDQLEALKSESqNKIELLLQQHQDRIEQLISEHEvEITGLTEKASSARS 292
Cdd:PRK03918 168 GEVIKEIKRRIERLEKfikrtenieeLIKEKEKELEEVLREI-NEISSELPELREELEKLEKEVK-ELEELKEEIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 293 QANSIQSQMEIIQEQARNQNSMymrqLSDLESTVSQLRSELREAKRMYEDKTE--ELEKQLVLANSELTEARTERDQFSQ 370
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEER----IEELKKEIEELEEKVKELKELKEKAEEyiKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 371 ESGNLDDQLQKLlADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNrnmevqrLEALLKALKSECQGQMERQM 450
Cdd:PRK03918 322 EINGIEERIKEL-EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE-------LERLKKRLTGLTPEKLEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 451 AAIQGKNESLE----KVSSLTAQLESTKEMLRKVVEELTAKK---------MTLESSERTISDLTTSLQEKERAIEATNA 517
Cdd:PRK03918 394 EELEKAKEEIEeeisKITARIGELKKEIKELKKAIEELKKAKgkcpvcgreLTEEHRKELLEEYTAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 518 EITKLRSR------VDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKviEILRQQIENMTQLVGqhgrtagamqvE 591
Cdd:PRK03918 474 KERKLRKElrelekVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKA--EEYEKLKEKLIKLKG-----------E 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 592 KAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNN 671
Cdd:PRK03918 541 IKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 672 LSAMKVAMGM-QKQITAKRGQIDALQSKiqfLEEAMTNANKEKHF-LKEEKSKLSQELSTVATEKNKMAGELEVLRSQER 749
Cdd:PRK03918 621 LKKLEEELDKaFEELAETEKRLEELRKE---LEELEKKYSEEEYEeLREEYLELSRELAGLRAELEELEKRREEIKKTLE 697
|
570
....*....|
gi 767931831 750 RLKEKVTNME 759
Cdd:PRK03918 698 KLKEELEERE 707
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
108-675 |
1.32e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 108 LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEaakclkedmlkdsntqieqlrkmmlshegvlq 187
Cdd:PRK02224 256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG-------------------------------- 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 188 eirsilvdfeeasgkkicehdsmstlhfrslgsaiskiLRELDTEIsylkgrifpVEDQLEALKSESQNKIELLLQQHQD 267
Cdd:PRK02224 304 --------------------------------------LDDADAEA---------VEARREELEDRDEELRDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 268 rieqlISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSmymrQLSDLESTVSQLRSELREAKRMYEDKTEEL 347
Cdd:PRK02224 337 -----AQAHNEEAESLREDADDLEERAEELREEAAELESELEEARE----AVEDRREEIEELEEEIEELRERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 348 EKqlvlANSELTEARTERDqfsqesgNLDDQLQKLLADLHKREKELslekEQNKRLWDR----DTGNSITIDHLRRELDN 423
Cdd:PRK02224 408 GN----AEDFLEELREERD-------ELREREAELEATLRTARERV----EEAEALLEAgkcpECGQPVEGSPHVETIEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 424 RNMEVQRLEALLKALKSEcqgqmerqMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTT 503
Cdd:PRK02224 473 DRERVEELEAELEDLEEE--------VEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 504 SLQEKERAIEATNAEITKLRSRVDLKLQE-------LQHLKNEGDHLRNVQTECEALklqmTEKDKVIEILRQQIENMTQ 576
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEEEAEEAREEvaelnskLAELKERIESLERIRTLLAAI----ADAEDEIERLREKREALAE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 577 LVGQHGRTAGAMQVEKAQLEKEINDRRME-----LKELKILKDKKDAKIRELEARVSDLeLEKVKLVNAGSERLRAVKDi 651
Cdd:PRK02224 621 LNDERRERLAEKRERKRELEAEFDEARIEearedKERAEEYLEQVEEKLDELREERDDL-QAEIGAVENELEELEELRE- 698
|
570 580
....*....|....*....|....*..
gi 767931831 652 kqERDQLLNEV---KTSRSELNNLSAM 675
Cdd:PRK02224 699 --RREALENRVealEALYDEAEELESM 723
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
80-488 |
1.33e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 80 LEEYSHQVKDLQRRLN----ESNELhEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELE 155
Cdd:TIGR02169 676 LQRLRERLEGLKRELSslqsELRRI-ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 156 AAKclkeDMLKDSNTQIEQLrkmmlshEGVLQEIRSILVDFEeasgkkicEHDSMSTLhfrslgSAISKILRELDTEISY 235
Cdd:TIGR02169 755 NVK----SELKELEARIEEL-------EEDLHKLEEALNDLE--------ARLSHSRI------PEIQAELSKLEEEVSR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 236 LKGRIFPVEDQLealksesqNKIELLLQQHQDRIEQLisehEVEITGLTEKASSARSQANSIQSQMEIIQEQ---ARNQN 312
Cdd:TIGR02169 810 IEARLREIEQKL--------NRLTLEKEYLEKEIQEL----QEQRIDLKEQIKSIEKEIENLNGKKEELEEEleeLEAAL 877
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 313 SMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLAnSELTEARterdqfSQESGNLDDQLQKLLADLHKREKE 392
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL-SELKAKL------EALEEELSEIEDPKGEDEEIPEEE 950
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 393 LSLEKEQnkrlwdrdtgnsitidhlrreldnrnMEVQRLEALLKALKsecqgqmERQMAAIQGKNESLEKVSSLTAQ--- 469
Cdd:TIGR02169 951 LSLEDVQ--------------------------AELQRVEEEIRALE-------PVNMLAIQEYEEVLKRLDELKEKrak 997
|
410
....*....|....*....
gi 767931831 470 LESTKEMLRKVVEELTAKK 488
Cdd:TIGR02169 998 LEEERKAILERIEEYEKKK 1016
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
266-544 |
1.54e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 266 QDRIEQLisehEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMymRQLSDLESTVSQLRSELREAKRMYE---- 341
Cdd:COG4913 609 RAKLAAL----EAELAELEEELAEAEERLEALEAELDALQERREALQRL--AEYSWDEIDVASAEREIAELEAELErlda 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 342 --DKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLaDLHKREKELSLEKEQNKRLWDRDtgnsiTIDHLRR 419
Cdd:COG4913 683 ssDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE-EELDELQDRLEAAEDLARLELRA-----LLEERFA 756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 420 ELDNRNME---VQRLEALLKALKSE---CQGQMERQMAAIqgKNESLEKVSSLTAQLESTKE---MLRKVVE----ELTA 486
Cdd:COG4913 757 AALGDAVErelRENLEERIDALRARlnrAEEELERAMRAF--NREWPAETADLDADLESLPEylaLLDRLEEdglpEYEE 834
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767931831 487 K--KMTLESSERTISDLTTSLQEKERAIeatnaeitklRSRVDLKLQELQHLK-NEGDHLR 544
Cdd:COG4913 835 RfkELLNENSIEFVADLLSKLRRAIREI----------KERIDPLNDSLKRIPfGPGRYLR 885
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
226-606 |
1.90e-07 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 54.69 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 226 LRELDTEISYLKGRIFPVEDQLEALKSESQNKIEL--LLQQHQDRIEQLISEHEveitGLTEKASSARSQANSIQSQMEI 303
Cdd:pfam19220 19 LEDLRSLKADFSQLIEPIEAILRELPQAKSRLLELeaLLAQERAAYGKLRRELA----GLTRRLSAAEGELEELVARLAK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 304 IQEQARNQnsmymrqlsdlESTVSQLRSELREAkrmyEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
Cdd:pfam19220 95 LEAALREA-----------EAAKEELRIELRDK----TAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 384 ADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDN----RNMEVQRLEALLKALKSEcQGQMERQMAAIQGKNES 459
Cdd:pfam19220 160 GELATARERLALLEQENRRLQALSEEQAAELAELTRRLAEletqLDATRARLRALEGQLAAE-QAERERAEAQLEEAVEA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 460 LE--------KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRvdlkLQ 531
Cdd:pfam19220 239 HRaeraslrmKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQ----FQ 314
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767931831 532 ELQHLKNEGDHlrnvqtECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRtagAMQVEKAQLEKEINDRRMEL 606
Cdd:pfam19220 315 EMQRARAELEE------RAEMLTKALAAKDAALERAEERIASLSDRIAELTK---RFEVERAALEQANRRLKEEL 380
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
118-729 |
1.95e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 1.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 118 KLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKclkedmlkdsntqiEQLRKMMLSHEGVLQEIRSILVDFE 197
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELR--------------LELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 198 EASGKKIcehdsmstlHFRSLGSAISKILRELDTEISYLKGRIfpveDQLEALKSESQNKIELLLQQHQDRIEQLISEHE 277
Cdd:COG1196 299 RLEQDIA---------RLEERRRELEERLEELEEELAELEEEL----EELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 278 VEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSmyMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSE 357
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ--LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 358 LTEARTERDQFSQESgnldDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKA 437
Cdd:COG1196 444 LEEAAEEEAELEEEE----EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 438 LKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKmtleSSERTISDLTTSLQEKERAIEATNA 517
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK----AGRATFLPLDKIRARAALAAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 518 EITKLRSRVDLKLQELQH-LKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
Cdd:COG1196 596 AIGAAVDLVASDLREADArYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 597 KEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELnnLSAMK 676
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL--EEEAL 753
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 677 VAMGMQKQITAKRGQIDALQSKIQFL-------EEAMTNANKEKHFLKEEKSKLSQELST 729
Cdd:COG1196 754 EELPEPPDLEELERELERLEREIEALgpvnllaIEEYEELEERYDFLSEQREDLEEARET 813
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-522 |
2.27e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 93 RLNESNELHEkqkfyLRQSVIDLQTKLQEMQMERDAmadirrresqsqedLRNQLQNTVHELEAAKCLKEDMLKDSNTQI 172
Cdd:TIGR02168 672 ILERRREIEE-----LEEKIEELEEKIAELEKALAE--------------LRKELEELEEELEQLRKELEELSRQISALR 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 173 EQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTLhfrslgsaiSKILRELDTEISYLKGRIFPVEDQLEALKS 252
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA---------EEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 253 EsqnkielllqqhQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSmymrQLSDLESTVSQLRSE 332
Cdd:TIGR02168 804 A------------LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE----DIESLAAEIEELEEL 867
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 333 LREAkrmyEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSlekeqnkrlwdrdtgnsi 412
Cdd:TIGR02168 868 IEEL----ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA------------------ 925
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 413 tidHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTL 491
Cdd:TIGR02168 926 ---QLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARrRLKRLENKIKELGPVNLAAIEEYEELKERY 1002
|
410 420 430
....*....|....*....|....*....|.
gi 767931831 492 ESSERTISDLTTSLQEKERAIEATNAEITKL 522
Cdd:TIGR02168 1003 DFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
224-663 |
2.29e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 224 KILRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRIEQLisEHEVEITGLTEKASSARSQANSIQSQMEI 303
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEE-LEELEAELEELREELEKL--EKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 304 IQEQARNQNSMyMRQLSDLESTVSQLRSELREAKRmyeDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
Cdd:COG4717 151 LEERLEELREL-EEELEELEAELAELQEELEELLE---QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 384 ADLHKREKELSLEKEQNKRLWDRDTGNSIT----IDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQgknES 459
Cdd:COG4717 227 EELEQLENELEAAALEERLKEARLLLLIAAallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG---KE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 460 LEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEitklrsrvdLKLQELQHLKNE 539
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE---------LQLEELEQEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 540 GDHLRNVQTEcEALKLQMTEKDKVIEiLRQQIENMTQLVGQH--GRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKD 617
Cdd:COG4717 375 LLAEAGVEDE-EELRAALEQAEEYQE-LKEELEELEEQLEELlgELEELLEALDEEELEEELEELEEELEELEEELEELR 452
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 767931831 618 AKIRELEARVSDLElekvklvnaGSERLRavkDIKQERDQLLNEVK 663
Cdd:COG4717 453 EELAELEAELEQLE---------EDGELA---ELLQELEELKAELR 486
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
342-545 |
2.64e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 2.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 342 DKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREL 421
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 422 DNRNMEV-QRLEALLKA---------LKSECQGQMERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAKKMTL 491
Cdd:COG4942 100 EAQKEELaELLRALYRLgrqpplallLSPEDFLDAVRRLQYLKYLAPARRE---QAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 767931831 492 essERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN 545
Cdd:COG4942 177 ---EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
326-792 |
2.74e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 2.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 326 VSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLdDQLQKLLADLHKREKELSLEkeqnkrlwd 405
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEEL-EELEEELEELEAELEELREE--------- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 406 rdtgnsitIDHLRRELDNRNMEVQRLEalLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELT 485
Cdd:COG4717 118 --------LEKLEKLLQLLPLYQELEA--LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 486 AKKmtlessERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQT--ECEALKLQMTEKDKV 563
Cdd:COG4717 188 LAT------EEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlkEARLLLLIAAALLAL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 564 IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSE 643
Cdd:COG4717 262 LGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 644 RLRAVKDIKQERDQL--------LNEVKTSRSELNNLSAMKVAMGMQKQITAKRgQIDALQSKIQFLEEAMTNANKEKHF 715
Cdd:COG4717 342 LLDRIEELQELLREAeeleeelqLEELEQEIAALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGELEE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 716 L--KEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNME--VALDKASLQFAECQDIIQRQEQESVRLKLQHT 791
Cdd:COG4717 421 LleALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEedGELAELLQELEELKAELRELAEEWAALKLALE 500
|
.
gi 767931831 792 L 792
Cdd:COG4717 501 L 501
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
543-769 |
6.44e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 6.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 543 LRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRE 622
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 623 L------EARVSDLELekvkLVNAGS-----ERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMKvamgmQKQITAKRGQ 691
Cdd:COG4942 109 LlralyrLGRQPPLAL----LLSPEDfldavRRLQYLKYLAPARREQAEELRADLAELAALRAEL-----EAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767931831 692 IDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQF 769
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
297-519 |
6.54e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.48 E-value: 6.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 297 IQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKR------------MYEDKTEELEKQLVLANSELTEARTE 364
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQknglvdlseeakLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 365 RDQFSQESGNLDDQLQKLLAD-----LHKREKELSLEKEQnkrlwdrdtgnsitidhLRRELDNRNMEVQRLEALLKALK 439
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSpviqqLRAQLAELEAELAE-----------------LSARYTPNHPDVIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 440 SECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVE---ELTAKKMTLESSERTISDLTTSLQEK--ERAIE 513
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQaREASLQAQLAQLEARLAELPEleaELRRLEREVEVARELYESLLQRLEEArlAEALT 384
|
....*.
gi 767931831 514 ATNAEI 519
Cdd:COG3206 385 VGNVRV 390
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
226-574 |
6.96e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 6.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 226 LRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL--LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEI 303
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELeqLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 304 IQEQARNQNSMymrqlsdlestvsqlRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
Cdd:TIGR02168 759 LEAEIEELEER---------------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 384 ADLHKREKELSLEKEQNKRlwdrdtgnsitidhLRRELDNRNMEVQRLEALLKALKSECqgqmerqmaaiqgkNESLEKV 463
Cdd:TIGR02168 824 ERLESLERRIAATERRLED--------------LEEQIEELSEDIESLAAEIEELEELI--------------EELESEL 875
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 464 SSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELqhLKNEGDHL 543
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL--SEEYSLTL 953
|
330 340 350
....*....|....*....|....*....|.
gi 767931831 544 RNVQTECEALKLQMTEKDKVIEILRQQIENM 574
Cdd:TIGR02168 954 EEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
342-784 |
8.99e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 8.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 342 DKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEkeqnkrlwdrdtgnSITIDHLRREL 421
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEI--------------SSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 422 DNRNMEVQRLEALLKALKsecqgQMERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAKKMTLESSE------ 495
Cdd:PRK03918 224 EKLEKEVKELEELKEEIE-----ELEKELESLEGSKRKLEE---KIRELEERIEELKKEIEELEEKVKELKELKekaeey 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 496 RTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMT 575
Cdd:PRK03918 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 576 QLVGQH-GRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSE-----RLRAVK 649
Cdd:PRK03918 376 RLKKRLtGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRElteehRKELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 650 DIKQERDQLLNEVKTSRSELNNLSAMKVAMGMqkqITAKRGQIDALQSKIQFLEEAmtnANKEKHFLKEEKSKLSQELST 729
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRELEK---VLKKESELIKLKELAEQLKEL---EEKLKKYNLEELEKKAEEYEK 529
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 767931831 730 VATEKNKMAGELEVLRSQERRLKE---KVTNMEVALDKASLQFAECQDIIQRQEQESV 784
Cdd:PRK03918 530 LKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKELEELGFESV 587
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
120-742 |
1.02e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.30 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 120 QEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEA 199
Cdd:pfam12128 290 QLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGK 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 200 SGKKICEHDSMSTLHFRSLGSAISKILRELDT---EISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEH 276
Cdd:pfam12128 370 HQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKireARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGEL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 277 EVEITGLT----------------EKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMY 340
Cdd:pfam12128 450 KLRLNQATatpelllqlenfderiERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQL 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 341 EDKTEELEKQLvlanselteaRTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKrlwdrdtgNSITIDHLRRE 420
Cdd:pfam12128 530 FPQAGTLLHFL----------RKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNL--------YGVKLDLKRID 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 421 LDNRNMEVQRLEALLKALKSECQGQMERQMAAiqgknesLEKVSSLTAQLESTKemlrkvvEELTAKKMTLESSERTISD 500
Cdd:pfam12128 592 VPEWAASEEELRERLDKAEEALQSAREKQAAA-------EEQLVQANGELEKAS-------REETFARTALKNARLDLRR 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 501 LTTSLQ-EKERAIEATNAEITKL-RSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEilrqqienmTQLV 578
Cdd:pfam12128 658 LFDEKQsEKDKKNKALAERKDSAnERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVE---------GALD 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 579 GQHGRTAGAMQVEKAQLEKEIN----DRRMELKELKILKD---KKDAKIRELEARVSDLE------------------LE 633
Cdd:pfam12128 729 AQLALLKAAIAARRSGAKAELKaletWYKRDLASLGVDPDviaKLKREIRTLERKIERIAvrrqevlryfdwyqetwlQR 808
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 634 KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNnlSAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAmTNANKEK 713
Cdd:pfam12128 809 RPRLATQLSNIERAISELQQQLARLIADTKLRRAKLE--MERKASEKQQVRLSENLRGLRCEMSKLATLKED-ANSEQAQ 885
|
650 660
....*....|....*....|....*....
gi 767931831 714 HFLKEEKSKLSQELSTVATEKNKMAGELE 742
Cdd:pfam12128 886 GSIGERLAQLEDLKLKRDYLSESVKKYVE 914
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
70-507 |
1.70e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 70 SPGKEHFERVLEEYSHQVKDLQRRLNE---SNELHEKQKFYLRQSVIDLQTKLQEMQMER--------DAMADIRRRESQ 138
Cdd:PRK02224 306 DADAEAVEARREELEDRDEELRDRLEEcrvAAQAHNEEAESLREDADDLEERAEELREEAaeleseleEAREAVEDRREE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 139 SQE------DLRNQLQNTVHELEAAKCLKEDMLKDSNtqieQLRKMMLSHEGVLQEIRSILVDFEE--ASGK-KICEHDS 209
Cdd:PRK02224 386 IEEleeeieELRERFGDAPVDLGNAEDFLEELREERD----ELREREAELEATLRTARERVEEAEAllEAGKcPECGQPV 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 210 MSTLHFRSLGSAISKIlRELDTEISYLKGRIFPVEDQLEALKS--ESQNKIELLLQQhQDRIEQLISEHEVEITGLTEKA 287
Cdd:PRK02224 462 EGSPHVETIEEDRERV-EELEAELEDLEEEVEEVEERLERAEDlvEAEDRIERLEER-REDLEELIAERRETIEEKRERA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 288 SSARSQANSIQSQMEIIQEQARNQnsmyMRQLSDLESTVSQLRSELREAKRMYE--DKTEELEKQLVLANSELTEARTER 365
Cdd:PRK02224 540 EELRERAAELEAEAEEKREAAAEA----EEEAEEAREEVAELNSKLAELKERIEslERIRTLLAAIADAEDEIERLREKR 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 366 DQFSQesgnLDDQLQKLLADLHKREKELSLEKEQNKrlwdrdtgnsitIDHLRRELDNRNMEVQRLEALLKALKSEcQGQ 445
Cdd:PRK02224 616 EALAE----LNDERRERLAEKRERKRELEAEFDEAR------------IEEAREDKERAEEYLEQVEEKLDELREE-RDD 678
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767931831 446 MERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKV---VEELTAKKMTL--ESSERTISDLTTSLQE 507
Cdd:PRK02224 679 LQAEIGAVENELEELEELRERREALENRVEALEALydeAEELESMYGDLraELRQRNVETLERMLNE 745
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
427-649 |
1.81e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 427 EVQRLEALLKALKSECQgQMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSL 505
Cdd:COG4942 21 AAAEAEAELEQLQQEIA-ELEKELAALKKEEKALLKqLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 506 QEKERAIEATNAEITKLRSRVDLKLqeLQHLKNEGDHLRN---VQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHG 582
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLAL--LLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767931831 583 RTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVK 649
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
80-660 |
2.11e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 80 LEEYSHQVKDLQRRLNESNELHEKqkfyLRQSVIDLQTKLQEmqmERDAMADIRRRESQSQEDLRnQLQNTVHELEAAKC 159
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEE----LEAELAELEAELEE---LRLELEELELELEEAQAEEY-ELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 160 LKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDfEEASGKKICEHDSMSTLHFRSLGSAISKILRELDTEISYLKGR 239
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEE-LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 240 ifpVEDQLEALKSESQNKIELL-LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNsmymRQ 318
Cdd:COG1196 385 ---AEELLEALRAAAELAAQLEeLEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE----EE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 319 LSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSeLTEARTERDQFSQESGNLDDQLQK-----LLADLHKREKEL 393
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLL-LLEAEADYEGFLEGVKAALLLAGLrglagAVAVLIGVEAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 394 ------SLEKEQNKRLWDRDTGNSITIDHLRRELDNR-------NMEVQRLEALLKALKSECQGQMERQMAAIQGKN--- 457
Cdd:COG1196 537 eaaleaALAAALQNIVVEDDEVAAAAIEYLKAAKAGRatflpldKIRARAALAAALARGAIGAAVDLVASDLREADAryy 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 458 ---ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQ 534
Cdd:COG1196 617 vlgDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 535 HLKNEGDHLRNVQtecEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKElkilkd 614
Cdd:COG1196 697 EALLAEEEEEREL---AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER------ 767
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 767931831 615 kkdaKIRELEARVSDL---------ELEKVKlvnagsERLRA----VKDIKQERDQLLN 660
Cdd:COG1196 768 ----ELERLEREIEALgpvnllaieEYEELE------ERYDFlseqREDLEEARETLEE 816
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
450-665 |
2.13e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 450 MAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLK 529
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 530 LQELQHLKNE-GDHLRNVQT--ECEALKLQMTEKD------------KVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ 594
Cdd:COG4942 96 RAELEAQKEElAELLRALYRlgRQPPLALLLSPEDfldavrrlqylkYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767931831 595 LEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTS 665
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
310-742 |
3.03e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.26 E-value: 3.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 310 NQNSMYMRQLSDLESTVSQLRSELREAKrmyeDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKR 389
Cdd:pfam05483 240 KQVSLLLIQITEKENKMKDLTFLLEESR----DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKAL 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 390 EKELSLekeQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEA----LLKALKSECQ------GQMERQMAAIQGKNES 459
Cdd:pfam05483 316 EEDLQI---ATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEAttcsLEELLRTEQQrlekneDQLKIITMELQKKSSE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 460 LEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE 539
Cdd:pfam05483 393 LEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 540 gdhLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQlvgqhgrTAGAMQVE-KAQLEKEINDRRMELKELKILKDkkda 618
Cdd:pfam05483 473 ---VEDLKTELEKEKLKNIELTAHCDKLLLENKELTQ-------EASDMTLElKKHQEDIINCKKQEERMLKQIEN---- 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 619 kIRELEARVSDlELEKVKlvnagserlravKDIKQERDQLlnEVKTSRSELNNLSAMKVAMGMQKQITAKRGQIDALQSK 698
Cdd:pfam05483 539 -LEEKEMNLRD-ELESVR------------EEFIQKGDEV--KCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQ 602
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 767931831 699 IQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELE 742
Cdd:pfam05483 603 IENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELA 646
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
315-793 |
4.39e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 315 YMRQLSDLESTVSQLR------SELREAKRMYEDKTEELEK-QLVLANSELTEARTERDQFSQESGNLDDQLQKL---LA 384
Cdd:COG4913 233 HFDDLERAHEALEDAReqiellEPIRELAERYAAARERLAElEYLRAALRLWFAQRRLELLEAELEELRAELARLeaeLE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 385 DLHKREKELSLEKEQNKRLWDRDTGNSIT-----IDHLRRELDNRNMEVQRLEALLKALKsecqgqmerqMAAIQGKNES 459
Cdd:COG4913 313 RLEARLDALREELDELEAQIRGNGGDRLEqlereIERLERELEERERRRARLEALLAALG----------LPLPASAEEF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 460 LEKVSSLTAQLESTKEMLRKVVEELTakkmtlessertisDLTTSLQEKERAIEATNAEITKLRSR---VDLKLQEL--- 533
Cdd:COG4913 383 AALRAEAAALLEALEEELEALEEALA--------------EAEAALRDLRRELRELEAEIASLERRksnIPARLLALrda 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 534 --QHLKNEGDHLRNVqteCEALKLQMTEK------------------------DKVIEILRqQIENMTQLVGQH------ 581
Cdd:COG4913 449 laEALGLDEAELPFV---GELIEVRPEEErwrgaiervlggfaltllvppehyAAALRWVN-RLHLRGRLVYERvrtglp 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 582 -------------------------------GRTAGAMQVEKA-QLEK------------------EINDRRMELKELkI 611
Cdd:COG4913 525 dperprldpdslagkldfkphpfrawleaelGRRFDYVCVDSPeELRRhpraitragqvkgngtrhEKDDRRRIRSRY-V 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 612 LKDKKDAKIRELEARVSDLELEKVKLvNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSAmkvamgMQKQITAKRGQ 691
Cdd:COG4913 604 LGFDNRAKLAALEAELAELEEELAEA-EERLEALEAELDALQERREALQRLAEYSWDEIDVAS------AEREIAELEAE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 692 IDALQSKIQFLEEamtnANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAE 771
Cdd:COG4913 677 LERLDASSDDLAA----LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE 752
|
570 580
....*....|....*....|....
gi 767931831 772 --CQDIIQRQEQESVRLKLQHTLD 793
Cdd:COG4913 753 erFAAALGDAVERELRENLEERID 776
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
262-759 |
6.58e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 6.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQansIQSQMEIIQEQARN--QNSMYMRQLSDLESTVSQLRSELREAKRm 339
Cdd:pfam01576 438 LQSELESVSSLLNEAEGKNIKLSKDVSSLESQ---LQDTQELLQEETRQklNLSTRLRQLEDERNSLQEQLEEEEEAKR- 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 340 yedkteELEKQLVLANSELTEARTERDQFSQESGNLDD---QLQKLLADLHKREKELSLEKE----QNKRLWDRDTGNSI 412
Cdd:pfam01576 514 ------NVERQLSTLQAQLSDMKKKLEEDAGTLEALEEgkkRLQRELEALTQQLEEKAAAYDklekTKNRLQQELDDLLV 587
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 413 TIDHLRRELDNRNMEVQRLEALLKALKS-ECQGQMERQMAAIQGKNE---------SLEKVSSLTAQLESTKEMLRKVVE 482
Cdd:pfam01576 588 DLDHQRQLVSNLEKKQKKFDQMLAEEKAiSARYAEERDRAEAEAREKetralslarALEEALEAKEELERTNKQLRAEME 667
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 483 ELTAKK-------MTLESSERT----ISDLTTSLQEKERAIEATnaEITKLRSRVDLKL------QELQHLKNEGD---- 541
Cdd:pfam01576 668 DLVSSKddvgknvHELERSKRAleqqVEEMKTQLEELEDELQAT--EDAKLRLEVNMQAlkaqfeRDLQARDEQGEekrr 745
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 542 ----HLRNVQTECEALKLQMTE---KDKVIEILRQQIENMTQLVGQhGRTAGAMQVEKAQleKEINDRRMELKELKILKD 614
Cdd:pfam01576 746 qlvkQVRELEAELEDERKQRAQavaAKKKLELDLKELEAQIDAANK-GREEAVKQLKKLQ--AQMKDLQRELEEARASRD 822
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 615 KKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMKvaMGMQKQITAKRGQIDA 694
Cdd:pfam01576 823 EILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEK--RRLEARIAQLEEELEE 900
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767931831 695 LQSKIQFLEEAMTNANkekhflkEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNME 759
Cdd:pfam01576 901 EQSNTELLNDRLRKST-------LQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEME 958
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
591-769 |
7.79e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.38 E-value: 7.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 591 EKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEkvklvnagserlraVKDIKQERDQLLNEVKTSRSELN 670
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKE--------------IKRLELEIEEVEARIKKYEEQLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 671 NLSAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELstvATEKNKMAGELEVLRSQERR 750
Cdd:COG1579 84 NVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAEL---EEKKAELDEELAELEAELEE 160
|
170
....*....|....*....
gi 767931831 751 LKEKVTNMEVALDKASLQF 769
Cdd:COG1579 161 LEAEREELAAKIPPELLAL 179
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
115-669 |
8.77e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 8.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 115 LQTKLQEMQMERDAMADIRRRESQSQEDLRNQlqntvhELEAAKCLKEdmLKDSNTQIEQLRKMMLSHEGVLQEIRSILV 194
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEK------EKELEEVLRE--INEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 195 DFEEASGKKICEHDSMSTLHFRslgsaiskiLRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLlqqhqdRIEQLIS 274
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEK---------IRELEERIEELKKEIEELEEKVKELKELKEKAEEYI------KLSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 275 EHEVEITGLTEKASSARSQANSIQSQMEIIQ------EQARNQNSMYMRQLSDLE------STVSQLRSELREAKRMYED 342
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKELEekeerlEELKKKLKELEKRLEELEerhelyEEAKAKKEELERLKKRLTG 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 343 KT-EELEKQLVLANSELTEARTERDQFSQESGNLDD---QLQKLLADLHKREKEL-----SLEKEQNKRLWDRDTGNSIT 413
Cdd:PRK03918 384 LTpEKLEKELEELEKAKEEIEEEISKITARIGELKKeikELKKAIEELKKAKGKCpvcgrELTEEHRKELLEEYTAELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 414 IDHLRRELDNRNMEVQ-RLEALLKALKSECQGQMERQMA----AIQGKNES--LEKVSSLTAQLESTKEMLRKVVEELTA 486
Cdd:PRK03918 464 IEKELKEIEEKERKLRkELRELEKVLKKESELIKLKELAeqlkELEEKLKKynLEELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 487 KKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSR-------VDLKLQELQHLKNEGDHLRNVQTECEALK----- 554
Cdd:PRK03918 544 LKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesveeLEERLKELEPFYNEYLELKDAEKELEREEkelkk 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 555 ---------LQMTEKDKVIEILRQQIENMTQLVGQhgRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEA 625
Cdd:PRK03918 624 leeeldkafEELAETEKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 767931831 626 RVSDL-----ELEKVKLVNAGSERLR-AVKDIKQE-RDQLLNEVKTSRSEL 669
Cdd:PRK03918 702 ELEERekakkELEKLEKALERVEELReKVKKYKALlKERALSKVGEIASEI 752
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
72-581 |
9.28e-06 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 49.75 E-value: 9.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 72 GKEHFERVLEEYSH----QVKDL-QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ 146
Cdd:pfam07111 126 GAEMVRKNLEEGSQreleEIQRLhQEQLSSLTQAHEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQ 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 147 LQNTVHELEAAKCLKEDMLKDSNTQI---------EQLRKMMLSHEGVLQEIRS------------------ILVDFEEA 199
Cdd:pfam07111 206 LSKTQEELEAQVTLVESLRKYVGEQVppevhsqtwELERQELLDTMQHLQEDRAdlqatvellqvrvqslthMLALQEEE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 200 SGKKICEHDSMSTLHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSE---------SQNKIELLLQQH-QDRI 269
Cdd:pfam07111 286 LTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQvaelqeqvtSQSQEQAILQRAlQDKA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 270 EQLISEH------EVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSelREAKRMYEDK 343
Cdd:pfam07111 366 AEVEVERmsakglQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPS--LSNRLSYAVR 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 344 TEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREldN 423
Cdd:pfam07111 444 KVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQ--Q 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 424 RNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtISDLTT 503
Cdd:pfam07111 522 LSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQ--LSDTKR 599
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767931831 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQH 581
Cdd:pfam07111 600 RLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQ 677
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
283-736 |
9.40e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 9.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 283 LTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEAR 362
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 363 TERDQFSQESGNLDDQLQKllADLHKREKELSLEKEQNKrlwdrdtgnsitIDHLRRELDNRNMEVQRLEALLKALKSEC 442
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKK--ADELKKAEELKKAEEKKK------------AEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 443 QGQMERQMAAIQGKNESLEKVSSLTAQLESTK--EMLRKVVEELTAK----KMTLESSERTISDLTTSLQEKERAIEATN 516
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKkaEEEKKKVEQLKKKeaeeKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 517 AEITKLRSRVDLKLQELQHLKNEGDHLRNVqtecEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKA----EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 597 KEINDRRmELKELKILKDKKDAKIRELEARVSDLELEKvKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMK 676
Cdd:PTZ00121 1751 KDEEEKK-KIAHLKKEEEKKAEEIRKEKEAVIEEELDE-EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEME 1828
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767931831 677 VAMGMQKQITA--KRGQIDALQS-KIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNK 736
Cdd:PTZ00121 1829 DSAIKEVADSKnmQLEEADAFEKhKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIE 1891
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
96-752 |
1.35e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.33 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 96 ESNELHEKQKFYLRQSVIDLQTK-LQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHeleAAKCLKEDMLKDSntqiEQ 174
Cdd:pfam05483 98 EAELKQKENKLQENRKIIEAQRKaIQELQFENEKVSLKLEEEIQENKDLIKENNATRH---LCNLLKETCARSA----EK 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 175 LRKmmlsHEGVLQEIRSILVDFEEASGKKIcehdsmstLHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSES 254
Cdd:pfam05483 171 TKK----YEYEREETRQVYMDLNNNIEKMI--------LAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDK 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 255 QNKIELLLQQhqdrieqlISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLE----------S 324
Cdd:pfam05483 239 EKQVSLLLIQ--------ITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEdikmslqrsmS 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 325 TVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlw 404
Cdd:pfam05483 311 TQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK-- 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 405 drdtgNSITIDHLRRELDNRNMEVQRLEALL-------------KALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLE 471
Cdd:pfam05483 389 -----KSSELEEMTKFKNNKEVELEELKKILaedeklldekkqfEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIK 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 472 STKEMLRKVVEELTAK--KMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDL---KLQE---LQHLKNEGDHL 543
Cdd:pfam05483 464 TSEEHYLKEVEDLKTEleKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIincKKQEermLKQIENLEEKE 543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 544 RNVQTECEALKLQMTEK-DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ---LEKEINDRRMELKEL----KILKDK 615
Cdd:pfam05483 544 MNLRDELESVREEFIQKgDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKcnnLKKQIENKNKNIEELhqenKALKKK 623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 616 KDAKIREL---EARVSDLELE----KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNnlSAMKVAMGMQKQITAK 688
Cdd:pfam05483 624 GSAENKQLnayEIKVNKLELElasaKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIAD--EAVKLQKEIDKRCQHK 701
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767931831 689 RGQIDALQSK-----IQFLEEAMTNANKEKHFLKEEKS---KLSQELSTVATEKNKMAGELEVLRSQERRLK 752
Cdd:pfam05483 702 IAEMVALMEKhkhqyDKIIEERDSELGLYKNKEQEQSSakaALEIELSNIKAELLSLKKQLEIEKEEKEKLK 773
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
74-609 |
1.71e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 74 EHFERVLEEYSHQVKDLQRRLNESN---ELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNT 150
Cdd:COG1196 270 EELRLELEELELELEEAQAEEYELLaelARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 151 VHELEAAkclkEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASgkkicehdsmstlhfrslgSAISKILRELD 230
Cdd:COG1196 350 EEELEEA----EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA-------------------AELAAQLEELE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 231 TEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQL--ISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQA 308
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAeeEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 309 RNQNSMY-----MRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELT-EARTERDQFSQESGNLDDQLQKL 382
Cdd:COG1196 487 AEAAARLlllleAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAaLAAALQNIVVEDDEVAAAAIEYL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 383 LADLHKREKELSLEKEQNKRLwdrdtgnsitidhlrRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEK 462
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAA---------------LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 463 VSSLTAQLESTKEMLRKVVEELT----AKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN 538
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEggsaGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767931831 539 EGDHLRNVQTECEALKLQmteKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKEL 609
Cdd:COG1196 712 AEEERLEEELEEEALEEQ---LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
287-526 |
1.87e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 287 ASSARSQANSIQSQMEIIQEQARNQNsmymRQLSDLESTVSQLRSELREAKRMYEDKTE---ELEKQLVLANSELTEART 363
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELE----KELAALKKEEKALLKQLAALERRIAALARrirALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 364 ERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKSECQ 443
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 444 GQMERQMAAIQGKNESLekvssltAQLESTKEMLRKVVEELTAKKmtlESSERTISDLTTSLQEKERAIEATNAEITKLR 523
Cdd:COG4942 171 AERAELEALLAELEEER-------AALEALKAERQKLLARLEKEL---AELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
...
gi 767931831 524 SRV 526
Cdd:COG4942 241 ERT 243
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
341-797 |
2.26e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 341 EDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRE 420
Cdd:TIGR04523 74 NNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 421 LDNRNMEVQRLEALLKALKSEcQGQMERQmaaIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISD 500
Cdd:TIGR04523 154 LEKLNNKYNDLKKQKEELENE-LNLLEKE---KLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQ 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 501 LTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQlvgq 580
Cdd:TIGR04523 230 LKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQ---LSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN---- 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 581 hgrtaGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLN 660
Cdd:TIGR04523 303 -----QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKK 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 661 EVKTSRSELNNLSAmkvamgmqkqitakrgQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGE 740
Cdd:TIGR04523 378 ENQSYKQEIKNLES----------------QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSE 441
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 767931831 741 LEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDIKEL 797
Cdd:TIGR04523 442 IKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL 498
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
357-768 |
2.73e-05 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 48.15 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 357 ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT---IDHLRRELDNRNMEVQRLEA 433
Cdd:pfam05622 1 DLSEAQEEKDELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPGgkkYLLLQKQLEQLQEENFRLET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 434 LLKALKSECQgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLtTSLQEKERAIE 513
Cdd:pfam05622 81 ARDDYRIKCE-ELEKEVLELQHRNEELTSLAEEAQALKDEMDILRESSDKVKKLEATVETYKKKLEDL-GDLRRQVKLLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 514 ATNAEITK--------------LRSRVDL---KLQELQHlKNEGDHLRNVQTECEALKLQ------MTEKDKVIE---IL 567
Cdd:pfam05622 159 ERNAEYMQrtlqleeelkkanaLRGQLETykrQVQELHG-KLSEESKKADKLEFEYKKLEeklealQKEKERLIIerdTL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 568 RQQIENM--TQLVGQHGRTAGAMQVEKAQ---------LEKEINDRRMELK-ELKILKDKKDAKIRELEARVSDLELEKV 635
Cdd:pfam05622 238 RETNEELrcAQLQQAELSQADALLSPSSDpgdnlaaeiMPAEIREKLIRLQhENKMLRLGQEGSYRERLTELQQLLEDAN 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 636 KLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSA------------MKVAMGMQKQITAKRGQIDALQS------ 697
Cdd:pfam05622 318 RRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAEdssllkqkleehLEKLHEAQSELQKKKEQIEELEPkqdsnl 397
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767931831 698 --KIQFLEEAMTNANKEKHFLKEEKSKLSQELSTV-----ATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQ 768
Cdd:pfam05622 398 aqKIDELQEALRKKDEDMKAMEERYKKYVEKAKSViktldPKQNPASPPEIQALKNQLLEKDKKIEHLERDFEKSKLQ 475
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
287-700 |
2.83e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.37 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 287 ASSARSQANSIQSQMEIIQEQARNQNSMYMRQlSDLESTVSQLrselrEAKRMYEDKTEELEKQLVLANSELTEARTERD 366
Cdd:PRK11281 31 SNGDLPTEADVQAQLDALNKQKLLEAEDKLVQ-QDLEQTLALL-----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 367 QFSQEsgnLDDQLQKLLADLHKREkelsLEKEQNKRL-----WDRD--TGNSITI------DHLRRELDNRNMEVQRLEA 433
Cdd:PRK11281 105 ALKDD---NDEETRETLSTLSLRQ----LESRLAQTLdqlqnAQNDlaEYNSQLVslqtqpERAQAALYANSQRLQQIRN 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 434 LLK-------ALKSECQGQMERQMAAIQGKNE----SLEKVSSLTaqlestkEMLRKVVEELTAKKMTLessERTISDLT 502
Cdd:PRK11281 178 LLKggkvggkALRPSQRVLLQAEQALLNAQNDlqrkSLEGNTQLQ-------DLLQKQRDYLTARIQRL---EHQLQLLQ 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 503 TSLQEKERAI-EATnaeitklrsrvdlkLQELQHLKNEGDHLRN--VQTECEAlKLQMTEKdkvieiLRQQIENMTQLVG 579
Cdd:PRK11281 248 EAINSKRLTLsEKT--------------VQEAQSQDEAARIQANplVAQELEI-NLQLSQR------LLKATEKLNTLTQ 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 580 QHGRTA----GAMQVEKAqLEKEINDRRMELKELKILKDKK-----DAKIRELEARVSDLELE-------KVKLVNAGS- 642
Cdd:PRK11281 307 QNLRVKnwldRLTQSERN-IKEQISVLKGSLLLSRILYQQQqalpsADLIEGLADRIADLRLEqfeinqqRDALFQPDAy 385
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 643 ----ERLRAVKDIKQERDQLLNEVKTSR-------SELNNLSAMKVAMGM-QKQITAKRgqiDALQSKIQ 700
Cdd:PRK11281 386 idklEAGHKSEVTDEVRDALLQLLDERRelldqlnKQLNNQLNLAINLQLnQQQLLSVS---DSLQSTLT 452
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
462-698 |
3.95e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 3.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 462 KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELqhlkneGD 541
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL------GE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 542 HLRNVQTECEAL-KLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKI 620
Cdd:COG3883 91 RARALYRSGGSVsYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767931831 621 RELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMKVAMGMQKQITAKRGQIDALQSK 698
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAG 248
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
327-491 |
4.09e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 327 SQLRSELREAKRMYEDKTEELE---KQLVL-ANSELTEARTErdqFSQESGNLDDQLQKLLADLHKREKELSLEKEqnkr 402
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAEaikKEALLeAKEEIHKLRNE---FEKELRERRNELQKLEKRLLQKEENLDRKLE---- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 403 lwdrdtgnsiTIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQmaaiqgkNESLEKVSSLTAQlESTKEMLRKVVE 482
Cdd:PRK12704 104 ----------LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ-------LQELERISGLTAE-EAKEILLEKVEE 165
|
....*....
gi 767931831 483 ELTAKKMTL 491
Cdd:PRK12704 166 EARHEAAVL 174
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
172-763 |
8.03e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 8.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 172 IEQLRKMMLSHEGVLQEIRSILVdfeeasgkKICEHDSMSTLHFRSLGSAISKILRELDTEISYLKGRifpvedqlealk 251
Cdd:pfam12128 181 IDKIAKAMHSKEGKFRDVKSMIV--------AILEDDGVVPPKSRLNRQQVEHWIRDIQAIAGIMKIR------------ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 252 sesqNKIELLlqqhQDRIEQLISEHeVEITGLTEKASSARSQansIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRS 331
Cdd:pfam12128 241 ----PEFTKL----QQEFNTLESAE-LRLSHLHFGYKSDETL---IASRQEERQETSAELNQLLRTLDDQWKEKRDELNG 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 332 ELREAKRMYEDKTEELE------KQLVLANSELTEARTER-DQFSQESGNLDDQLQKLLadlhkrEKELSLEKEQNKRLW 404
Cdd:pfam12128 309 ELSAADAAVAKDRSELEaledqhGAFLDADIETAAADQEQlPSWQSELENLEERLKALT------GKHQDVTAKYNRRRS 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 405 DRDTGNSITIDHLRRELDNRNMEVQRL----EALLKALKSECQGQMErqmaaiQGKNESLEKVSSLTAQLESTKEMLRKV 480
Cdd:pfam12128 383 KIKEQNNRDIAGIKDKLAKIREARDRQlavaEDDLQALESELREQLE------AGKLEFNEEEYRLKSRLGELKLRLNQA 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 481 V---EELTAKKMTLESSERTISDLTTSLQEKERAieatNAEITKLRSRVDlklQELQHLKNEGDHLRNVQTECEALKLQM 557
Cdd:pfam12128 457 TatpELLLQLENFDERIERAREEQEAANAEVERL----QSELRQARKRRD---QASEALRQASRRLEERQSALDELELQL 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 558 TEKD-KVIEILRQQIENMTQLVG------QHGRTAGAMQVEKAQLEKEIN--DRRMELKELKILK--DKKDAKIRELEAR 626
Cdd:pfam12128 530 FPQAgTLLHFLRKEAPDWEQSIGkvispeLLHRTDLDPEVWDGSVGGELNlyGVKLDLKRIDVPEwaASEEELRERLDKA 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 627 VSDLELEKVKLVNAGSERLRAVKDI---KQERDQLLNEVKTSRSELNNLSAMKVAMGMQKQITAKRGQIDALQSKIQFLE 703
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELekaSREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEA 689
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767931831 704 EAMTNANKEKHFLKEEKsklsQELSTVATEKNKMAGELEVLRS-QERRLKEKVTNMEVALD 763
Cdd:pfam12128 690 QLKQLDKKHQAWLEEQK----EQKREARTEKQAYWQVVEGALDaQLALLKAAIAARRSGAK 746
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
553-742 |
1.05e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 553 LKLQmtEKDKVIEILRQQIENMTQLVGqhgrtagAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLEl 632
Cdd:COG1579 10 LDLQ--ELDSELDRLEHRLKELPAELA-------ELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 633 ekvklvnagsERLRAVKDIKqERDQLLNEVKTSRSELNNLSamKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKE 712
Cdd:COG1579 80 ----------EQLGNVRNNK-EYEALQKEIESLKRRISDLE--DEILELMERIEELEEELAELEAELAELEAELEEKKAE 146
|
170 180 190
....*....|....*....|....*....|
gi 767931831 713 khfLKEEKSKLSQELSTVATEKNKMAGELE 742
Cdd:COG1579 147 ---LDEELAELEAELEELEAEREELAAKIP 173
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
141-658 |
1.19e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.43 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 141 EDLRNQLQNTVHELEaakclkedmlkDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKICEHDSMSTLhfrslgS 220
Cdd:PRK01156 186 DYLEEKLKSSNLELE-----------NIKKQIADDEK---SHSITLKEIERLSIEYNNAMDDYNNLKSALNEL------S 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 221 AISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL----------LQQHQDRIEQLISEHEV------------ 278
Cdd:PRK01156 246 SLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIIndpvyknrnyINDYFKYKNDIENKKQIlsnidaeinkyh 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 279 EITGLTEKASSARSQANSIQSQMEIIQEQA---RNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLA- 354
Cdd:PRK01156 326 AIIKKLSVLQKDYNDYIKKKSRYDDLNNQIlelEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPd 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 355 --NSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNK----RLWDRDTGNSITIDHLRRELDNRNMEV 428
Cdd:PRK01156 406 aiKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcGTTLGEEKSNHIINHYNEKKSRLEEKI 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 429 QRLEALLKALKSECQGQMERQMAAIQGKNESLE----KVSSLTAQLESTKEMLRKVVE-ELTAKKMTLESSERTISDLTT 503
Cdd:PRK01156 486 REIEIEVKDIDEKIVDLKKRKEYLESEEINKSIneynKIESARADLEDIKIKINELKDkHDKYEEIKNRYKSLKLEDLDS 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 504 SLQEKERAIEA-TNAEITKLRSRVDLKLQELQHL-------------------------KNEGDHLRNVQTECEALKLQM 557
Cdd:PRK01156 566 KRTSWLNALAViSLIDIETNRSRSNEIKKQLNDLesrlqeieigfpddksyidksireiENEANNLNNKYNEIQENKILI 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 558 TEKDKVIEILRQQIENMTQLV-GQHGRTAGAMQVEK--AQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLE--L 632
Cdd:PRK01156 646 EKLRGKIDNYKKQIAEIDSIIpDLKEITSRINDIEDnlKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINetL 725
|
570 580
....*....|....*....|....*.
gi 767931831 633 EKVKLVNAgserlrAVKDIKQERDQL 658
Cdd:PRK01156 726 ESMKKIKK------AIGDLKRLREAF 745
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
507-786 |
1.26e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 507 EKERA---IEATNAEITKLRSRVDLKLQELQHLKNEGDH-LRNVQTECEALKLQMTEKDKVIEILRQQIENMTqlvgqhg 582
Cdd:TIGR02169 171 KKEKAleeLEEVEENIERLDLIIDEKRQQLERLRREREKaERYQALLKEKREYEGYELLKEKEALERQKEAIE------- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 583 RTAGAMQVEKAQLEKEINDRRMELKELKILkdkkdakIRELEARVSDLelekvklvnaGSERLRAVK----DIKQERDQL 658
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQL-------LEELNKKIKDL----------GEEEQLRVKekigELEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 659 LNEVKTSRSELNNlsamkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKhflkeekSKLSQELSTVATEKNKMA 738
Cdd:TIGR02169 307 ERSIAEKERELED---------AEERLAKLEAEIDKLLAEIEELEREIEEERKRR-------DKLTEEYAELKEELEDLR 370
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 767931831 739 GELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRL 786
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL 418
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
224-397 |
1.43e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.20 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 224 KILRELDTEISYLKGRIFPVEDQL-------EALKSESQnKIEL--LLQQHQDRIEQlISEhevEITGLTEKASSARSQA 294
Cdd:PRK10929 79 KLSAELRQQLNNERDEPRSVPPNMstdaleqEILQVSSQ-LLEKsrQAQQEQDRARE-ISD---SLSQLPQQQTEARRQL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 295 NSIQSQmeiIQEQARNQNSMYMRQLSDLESTVSQLRSelreakrmyedKTEELEKQLVLANSELTEARTERDQFSQESGN 374
Cdd:PRK10929 154 NEIERR---LQTLGTPNTPLAQAQLTALQAESAALKA-----------LVDELELAQLSANNRQELARLRSELAKKRSQQ 219
|
170 180
....*....|....*....|....*.
gi 767931831 375 LDDQLQKL---LADLHKREKELSLEK 397
Cdd:PRK10929 220 LDAYLQALrnqLNSQRQREAERALES 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
226-709 |
1.51e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 226 LRELDTEISYLKGRIfpveDQLEALKSESQNKIELLLQQHQ----DRIEQLisehEVEITGLTEKASSARSQANSIQSQM 301
Cdd:COG4913 297 LEELRAELARLEAEL----ERLEARLDALREELDELEAQIRgnggDRLEQL----EREIERLERELEERERRRARLEALL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 302 EIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAkrmyEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK 381
Cdd:COG4913 369 AALGLPLPASAEEFAALRAEAAALLEALEEELEAL----EEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 382 LLADLhkrEKELSLEKEQ------------------------------------------NKRLWDRDTGNSITIDHLRR 419
Cdd:COG4913 445 LRDAL---AEALGLDEAElpfvgelievrpeeerwrgaiervlggfaltllvppehyaaaLRWVNRLHLRGRLVYERVRT 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 420 ELDNRNMEV---QRLEALLKALKSECQGQMERQMaaiqGKNESLEKVSSLTAqlestkemLRKVVEELTAKKMTLESSER 496
Cdd:COG4913 522 GLPDPERPRldpDSLAGKLDFKPHPFRAWLEAEL----GRRFDYVCVDSPEE--------LRRHPRAITRAGQVKGNGTR 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 497 TISDLTTSLQEK-------ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEAL-KLQMTEKD-----KV 563
Cdd:COG4913 590 HEKDDRRRIRSRyvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLaEYSWDEIDvasaeRE 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 564 IEILRQQIENMtqlvgqhgrTAGAMQVEkaQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLElekvklvnagsE 643
Cdd:COG4913 670 IAELEAELERL---------DASSDDLA--ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE-----------E 727
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767931831 644 RLRAVKDIKQERDQLLNEVKTSRSE--LNNLSAMKVAMGMQKQITAkrgQIDALQSKIQFLEEAMTNA 709
Cdd:COG4913 728 ELDELQDRLEAAEDLARLELRALLEerFAAALGDAVERELRENLEE---RIDALRARLNRAEEELERA 792
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
77-518 |
1.63e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 77 ERVLEEYSHQVKDLQRRLNESNELHE------KQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNT 150
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEErleelkKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 151 VHELEAAKCLKEDMLKDSNTQIEQLRKmmlshegVLQEIRSILVDFEEASGK------KICEHDSmstlhfrslgsaiSK 224
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKK-------EIKELKKAIEELKKAKGKcpvcgrELTEEHR-------------KE 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 225 ILRELDTEISYLKGRIFPVEDQLEALKSESQnKIELLLQqhqdRIEQLISEHEV--EITGLTEKASSARSQansiqsQME 302
Cdd:PRK03918 453 LLEEYTAELKRIEKELKEIEEKERKLRKELR-ELEKVLK----KESELIKLKELaeQLKELEEKLKKYNLE------ELE 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 303 IIQEQARNQNsmymRQLSDLESTVSQLRSELREAKRmYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL 382
Cdd:PRK03918 522 KKAEEYEKLK----EKLIKLKGEIKSLKKELEKLEE-LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 383 LADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKS--------ECQGQMERQMAAIQ 454
Cdd:PRK03918 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKkyseeeyeELREEYLELSRELA 676
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767931831 455 GKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLtTSLQEKERAIEATNAE 518
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV-EELREKVKKYKALLKE 739
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
593-786 |
1.81e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 593 AQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLvnagsERLRAVKDIKQERDQ--LLNEVKTSRSELN 670
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA-----ERYQALLKEKREYEGyeLLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 671 NLsamkvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKL-SQELSTVATEKNKMAGELEVLRSQER 749
Cdd:TIGR02169 241 AI---------ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIA 311
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 767931831 750 RLKEKVTNMEVALDKASLQF----AECQDIIQRQEQESVRL 786
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIdkllAEIEELEREIEEERKRR 352
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
77-635 |
1.85e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 77 ERVLEEYSHQVKDLQRRLNESNELhEKQKFYLRQSVIDLQTKLQEMQmERDAMADIRRRESQSQEDLRNQLQNTVHELEA 156
Cdd:PRK03918 220 REELEKLEKEVKELEELKEEIEEL-EKELESLEGSKRKLEEKIRELE-ERIEELKKEIEELEEKVKELKELKEKAEEYIK 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 157 AKCLKEDMLKDSNtqieQLRKMMLSHEGVLQEIRSILVDFEEASGKKicehdsmstlhfrslgSAISKILRELDTEISYL 236
Cdd:PRK03918 298 LSEFYEEYLDELR----EIEKRLSRLEEEINGIEERIKELEEKEERL----------------EELKKKLKELEKRLEEL 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 237 KGR------IFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQM--------- 301
Cdd:PRK03918 358 EERhelyeeAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIeelkkakgk 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 302 ------EIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRmyedKTEELEKQLvLANSELTEARTERDQFSqesgNL 375
Cdd:PRK03918 438 cpvcgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK----ELRELEKVL-KKESELIKLKELAEQLK----EL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 376 DDQLQKL-LADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDNRNMEVQRLEALLKALKSecqgqMERQMAAIQ 454
Cdd:PRK03918 509 EEKLKKYnLEELEKKAEEYEKLKEKLIKLKGE-------IKSLKKELEKLEELKKKLAELEKKLDE-----LEEELAELL 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 455 GK-----NESLEKVSSLTAQLESTKE---MLRKVVEELTAKKMTLESSERTISdlttslqEKERAIEATNAEITKLRSRv 526
Cdd:PRK03918 577 KEleelgFESVEELEERLKELEPFYNeylELKDAEKELEREEKELKKLEEELD-------KAFEELAETEKRLEELRKE- 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 527 dlkLQELQHLKNEGDHlrnvqtecEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKeindRRMEL 606
Cdd:PRK03918 649 ---LEELEKKYSEEEY--------EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK----AKKEL 713
|
570 580 590
....*....|....*....|....*....|..
gi 767931831 607 KELKILKDKKDA---KIRELEARVSDLELEKV 635
Cdd:PRK03918 714 EKLEKALERVEElreKVKKYKALLKERALSKV 745
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
454-726 |
1.92e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.30 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEEL-----TAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDL 528
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALDKLRSYLPKLnplreEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 529 KLQELQHLKNEGD---------HLRNVQTECEALKLQMTEKDKVIEILRQQIEnmtqlVGQHGRTAGAMQVEKAQLEKEI 599
Cdd:PRK05771 119 LEQEIERLEPWGNfdldlslllGFKYVSVFVGTVPEDKLEELKLESDVENVEY-----ISTDKGYVYVVVVVLKELSDEV 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 600 ND--RRMELKELKILKDKK-DAKIRELEARVSDLELEKVKLVnagsERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMk 676
Cdd:PRK05771 194 EEelKKLGFERLELEEEGTpSELIREIKEELEEIEKERESLL----EELKELAKKYLEELLALYEYLEIELERAEALSK- 268
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 767931831 677 vamgmqkqiTAKRGQIDALQ-----SKIQFLEEAMTNANKEKHFLKEEKSKLSQE 726
Cdd:PRK05771 269 ---------FLKTDKTFAIEgwvpeDRVKKLKELIDKATGGSAYVEFVEPDEEEE 314
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
454-798 |
1.97e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLttslqekeraieatNAEITKLRSRVDLKLQEL 533
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDL--------------KKQKEELENELNLLEKEK 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 534 QHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRmelKELKILK 613
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ---TQLNQLK 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 614 DKKDAKIRELEARVSDLElekvklvnagserlRAVKDIKQERDQLlNEVKTSRSELNNLSAMKVAMGMQKQITAKRGQID 693
Cdd:TIGR04523 260 DEQNKIKKQLSEKQKELE--------------QNNKKIKELEKQL-NQLKSEISDLNNQKEQDWNKELKSELKNQEKKLE 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 694 ALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQ 773
Cdd:TIGR04523 325 EIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE 404
|
330 340
....*....|....*....|....*
gi 767931831 774 DIIQRQEQESVRLKLQHTLDIKELQ 798
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIE 429
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
121-540 |
2.03e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 2.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 121 EMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSN---TQIEQLRKMMLSHEGVLQEIRSILVDFE 197
Cdd:pfam05483 353 EFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNnkeVELEELKKILAEDEKLLDEKKQFEKIAE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 198 EASGKkicEHDSMSTLHFRslgsaiSKILRELDTEISYLKGRIFPVEDQLEALKSESQNK--IELLLQQHQDRIeqlise 275
Cdd:pfam05483 433 ELKGK---EQELIFLLQAR------EKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEklKNIELTAHCDKL------ 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 276 hEVEITGLTEKASSARSQansIQSQMEIIQEQARNQNSMyMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLAN 355
Cdd:pfam05483 498 -LLENKELTQEASDMTLE---LKKHQEDIINCKKQEERM-LKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSE 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 356 SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALL 435
Cdd:pfam05483 573 ENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKF 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 436 KALKSECQGQMERQMAAIQGKNESLE----------------------KVSSLTAQLESTKEMLRKVVEELTAKKMTLES 493
Cdd:pfam05483 653 EEIIDNYQKEIEDKKISEEKLLEEVEkakaiadeavklqkeidkrcqhKIAEMVALMEKHKHQYDKIIEERDSELGLYKN 732
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 767931831 494 SERTISDLTTSLqekERAIEATNAEITKLRSRVDLKLQELQHLKNEG 540
Cdd:pfam05483 733 KEQEQSSAKAAL---EIELSNIKAELLSLKKQLEIEKEEKEKLKMEA 776
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
415-685 |
3.23e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 3.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 415 DHLRRELDNRNMEVQRLEALLKALKSEcQGQMERQmAAIQGKNE--SLEKVSSLT-AQLESTKEMLRKVVEELTAKKMtl 491
Cdd:pfam17380 299 ERLRQEKEEKAREVERRRKLEEAEKAR-QAEMDRQ-AAIYAEQErmAMERERELErIRQEERKRELERIRQEEIAMEI-- 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 492 eSSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILR--- 568
Cdd:pfam17380 375 -SRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERvrl 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 569 ------QQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKelKILKDKKDAKIRELEAR-VSDLELEKVKLVNAG 641
Cdd:pfam17380 454 eeqerqQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILE--KELEERKQAMIEEERKRkLLEKEMEERQKAIYE 531
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 767931831 642 SERLRAVKDIK------QERDQLLNEVKTSRSELNNLSAMKVAMGMQKQI 685
Cdd:pfam17380 532 EERRREAEEERrkqqemEERRRIQEQMRKATEERSRLEAMEREREMMRQI 581
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
318-519 |
3.75e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 318 QLSDLESTVSQLRSELREAkrmyEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELsleK 397
Cdd:COG3883 17 QIQAKQKELSELQAELEAA----QAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL---G 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 398 EQNKRLWDrdtgNSITIDHLRRELDNRNME--VQRLEALLKAlksecqgqMERQMAAIQGKNESLEKVSSLTAQLESTKE 475
Cdd:COG3883 90 ERARALYR----SGGSVSYLDVLLGSESFSdfLDRLSALSKI--------ADADADLLEELKADKAELEAKKAELEAKLA 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 767931831 476 MLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEI 519
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
317-670 |
4.07e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 317 RQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKR-EKELSL 395
Cdd:pfam02463 155 RLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLyLDYLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 396 EKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKE 475
Cdd:pfam02463 235 NEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 476 MLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQ-HLKNEGDHLRNVQTECEALK 554
Cdd:pfam02463 315 KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEeLLAKKKLESERLSSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 555 LQMTEKDKVIEI--LRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLEL 632
Cdd:pfam02463 395 EELELKSEEEKEaqLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL 474
|
330 340 350
....*....|....*....|....*....|....*...
gi 767931831 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELN 670
Cdd:pfam02463 475 KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVL 512
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
133-576 |
4.25e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 4.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 133 RRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMM--LSHEGVLQEIRSILVDFEEAsgkkicehdsm 210
Cdd:COG4717 79 ELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLqlLPLYQELEALEAELAELPER----------- 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 211 stlhFRSLGSAISKIlRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQL---ISEHEVEITGLTEKA 287
Cdd:COG4717 148 ----LEELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELqqrLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 288 SSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQ 367
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 368 FSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELD--NRNMEVQRLEALLKALKSECQGQ 445
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEelEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 446 MERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAkkmtlESSERTISDLTTSLQEKERAIEATNAEITKLRSR 525
Cdd:COG4717 383 DEEELRAALEQAEEYQE---LKEELEELEEQLEELLGELEE-----LLEALDEEELEEELEELEEELEELEEELEELREE 454
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 767931831 526 VDLKLQELQHLKNEGDhLRNVQTECEALKLQMTEKDK---VIEILRQQIENMTQ 576
Cdd:COG4717 455 LAELEAELEQLEEDGE-LAELLQELEELKAELRELAEewaALKLALELLEEARE 507
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
443-726 |
5.00e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 443 QGQMErqmaAIQGKNESLEKVSSLTAQL---ESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEI 519
Cdd:PRK03918 134 QGEID----AILESDESREKVVRQILGLddyENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 520 TKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQvEKAQLEKEI 599
Cdd:PRK03918 210 NEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-EKVKELKEL 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 600 NDRRMELKELKILKDKKDAKIRELEARVSDLE------LEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLS 673
Cdd:PRK03918 289 KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEeeingiEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK 368
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 767931831 674 AMKVAMgmqKQITAKRG--QIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQE 726
Cdd:PRK03918 369 AKKEEL---ERLKKRLTglTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE 420
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
458-629 |
5.33e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 458 ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDlKLQELQHLK 537
Cdd:COG1579 7 RALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK-KYEEQLGNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 538 NEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQhgrTAGAMQVEKAQLEKEINDRRMELKELKILKDKKD 617
Cdd:COG1579 86 RNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAE---LEAELAELEAELEEKKAELDEELAELEAELEELE 162
|
170
....*....|..
gi 767931831 618 AKIRELEARVSD 629
Cdd:COG1579 163 AEREELAAKIPP 174
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
457-722 |
5.54e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 43.36 E-value: 5.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 457 NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIeatNAEITKLRSRVDLKLQELQHL 536
Cdd:COG1340 14 EEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDEL---NEKVKELKEERDELNEKLNEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 537 KNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENmTQLVGQHGRTAgamqVEK-AQLEKEINDRRMELKELKILKDK 615
Cdd:COG1340 91 REELDELRKELAELNKAGGSIDKLRKEIERLEWRQQT-EVLSPEEEKEL----VEKiKELEKELEKAKKALEKNEKLKEL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 616 KdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLsamkvamgmQKQITAKRGQIDAL 695
Cdd:COG1340 166 R-AELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEA---------QEKADELHEEIIEL 235
|
250 260
....*....|....*....|....*..
gi 767931831 696 QSKIQFLEEAMTNANKEKHFLKEEKSK 722
Cdd:COG1340 236 QKELRELRKELKKLRKKQRALKREKEK 262
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
602-766 |
6.13e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 6.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 602 RRMELKELKilkdkkdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMKVAM-- 679
Cdd:PRK02224 249 RREELETLE-------AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELed 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 680 ---GMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVT 756
Cdd:PRK02224 322 rdeELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401
|
170
....*....|
gi 767931831 757 NMEVALDKAS 766
Cdd:PRK02224 402 DAPVDLGNAE 411
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
589-706 |
6.86e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.69 E-value: 6.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 589 QVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEkvklvnagSERLRAVKDIKQERDqllNEVKTSRSE 668
Cdd:COG2433 405 ERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERE--------LSEARSEERREIRKD---REISRLDRE 473
|
90 100 110
....*....|....*....|....*....|....*...
gi 767931831 669 LNNLsamkvamgmQKQITAKRGQIDALQSKIQFLEEAM 706
Cdd:COG2433 474 IERL---------ERELEEERERIEELKRKLERLKELW 502
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
116-759 |
1.01e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 116 QTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMML-----SHEGVLQEIR 190
Cdd:TIGR00606 425 QEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKaeknsLTETLKKEVK 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 191 SILVDFEEASGKKICEHDSMSTL-HFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRI 269
Cdd:TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQLnHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSK 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 270 EqlISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQ--ARNQNSMYMRQLSDLESTVSQLRSELREAKR--------- 338
Cdd:TIGR00606 585 E--INQTRDRLAKLNKELASLEQNKNHINNELESKEEQlsSYEDKLFDVCGSQDEESDLERLKEEIEKSSKqramlagat 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 339 -MYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHL 417
Cdd:TIGR00606 663 aVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 418 RRELD---NRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEEltAKKMTLESS 494
Cdd:TIGR00606 743 EKEIPelrNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQ--AAKLQGSDL 820
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 495 ERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEC-------EALKLQMTEKDKVIEIL 567
Cdd:TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIgtnlqrrQQFEEQLVELSTEVQSL 900
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 568 RQQIENMTQLVGQHGRTAGAMQVEKAQL-----------EKEINDRRMELKEL-----KILKDKKDAKIRELEARVSDLE 631
Cdd:TIGR00606 901 IREIKDAKEQDSPLETFLEKDQQEKEELissketsnkkaQDKVNDIKEKVKNIhgymkDIENKIQDGKDDYLKQKETELN 980
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 632 LEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMKVAMGMqKQITAKRGQIDALQSKIQFLEeamtnank 711
Cdd:TIGR00606 981 TVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENEL-KEVEEELKQHLKEMGQMQVLQ-------- 1051
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 767931831 712 ekhfLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNME 759
Cdd:TIGR00606 1052 ----MKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
251-639 |
1.07e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 43.13 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 251 KSESQNKIElllqqhqdRIEQLISEHEVEITGLTEKASSARSQansIQSQMEIIQEQArnQNSMYMRQLSDLESTVSQLR 330
Cdd:pfam13166 91 SIEIQEKIA--------KLKKEIKDHEEKLDAAEANLQKLDKE---KEKLEADFLDEC--WKKIKRKKNSALSEALNGFK 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 331 SELREAKRMYEdkteELEKQLVLANSELTEarterDQFSQESGNLDDQLQKLLADLHKREKEL-SLEKEQnkrLWDRD-T 408
Cdd:pfam13166 158 YEANFKSRLLR----EIEKDNFNAGVLLSD-----EDRKAALATVFSDNKPEIAPLTFNVIDFdALEKAE---ILIQKvI 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 409 GNSITIDHLRRELDNRNMeVQRLEALLKALKSEC---QGQMERQMAAIQGK---NESLEKVSSLTAQLESTKEMLRKVVE 482
Cdd:pfam13166 226 GKSSAIEELIKNPDLADW-VEQGLELHKAHLDTCpfcGQPLPAERKAALEAhfdDEFTEFQNRLQKLIEKVESAISSLLA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 483 ELTAkkMTLESSERTISDLTTslQEKERAIEATNAEITKLRSRVDLKLQELQHLKNegdhLRNVQTECEALKLQMTEKDK 562
Cdd:pfam13166 305 QLPA--VSDLASLLSAFELDV--EDIESEAEVLNSQLDGLRRALEAKRKDPFKSIE----LDSVDAKIESINDLVASINE 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 563 VIEILRQQIENMTQLVgQHGRTA-------------GAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSD 629
Cdd:pfam13166 377 LIAKHNEITDNFEEEK-NKAKKKlrlhlveefkseiDEYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKELEAQLRD 455
|
410
....*....|
gi 767931831 630 lELEKVKLVN 639
Cdd:pfam13166 456 -HKPGADEIN 464
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
114-309 |
1.08e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 114 DLQTKLQEMQMERDAMADIRRRESQSQEDLR------NQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQ 187
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAalerriAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 188 EIRSILVDFEEASGKKICEHDSMSTLHFRSLgSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL--LQQH 265
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRL-QYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLaeLEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 767931831 266 QDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQAR 309
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
445-661 |
1.16e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 42.21 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 445 QMERQMAAIQGKNESLE-----KVSSLTAQLESTKEMLRKVVEELTAKKMTLESS----ERTISDLTTSLQEKERAIEAT 515
Cdd:pfam00038 22 FLEQQNKLLETKISELRqkkgaEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLEldnlRLAAEDFRQKYEDELNLRTSA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 516 NAEITKLR--------SRVDLKLQeLQHLKNEGDHLRNV-QTECEALKLQMTEKDKVIEI--------------LRQQ-- 570
Cdd:pfam00038 102 ENDLVGLRkdldeatlARVDLEAK-IESLKEELAFLKKNhEEEVRELQAQVSDTQVNVEMdaarkldltsalaeIRAQye 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 571 -----------------IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARvsdLELE 633
Cdd:pfam00038 181 eiaaknreeaeewyqskLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKASLERQLAETEER---YELQ 257
|
250 260
....*....|....*....|....*...
gi 767931831 634 KVKLVNAGSERLRAVKDIKQERDQLLNE 661
Cdd:pfam00038 258 LADYQELISELEAELQETRQEMARQLRE 285
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
609-755 |
1.54e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 609 LKILKDKKDAKIRELEARVSDLELEKVKLVN----AGSERLRAVKD----IKQERDQLLNEVKTSRSELNNLSAMKvamg 680
Cdd:COG0542 402 VRMEIDSKPEELDELERRLEQLEIEKEALKKeqdeASFERLAELRDelaeLEEELEALKARWEAEKELIEEIQELK---- 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 681 mqKQITAKRGQIDALQSKIQFLEEAMtnaNKEKHFLKEEKSKlsQELSTVATEK-----NKM-AGELEVLRSQERRLKEK 754
Cdd:COG0542 478 --EELEQRYGKIPELEKELAELEEEL---AELAPLLREEVTE--EDIAEVVSRWtgipvGKLlEGEREKLLNLEEELHER 550
|
.
gi 767931831 755 V 755
Cdd:COG0542 551 V 551
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
319-786 |
1.69e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 319 LSDLESTVSQLrSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGN-----------------LDDQLQK 381
Cdd:PRK01156 175 IDMLRAEISNI-DYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNamddynnlksalnelssLEDMKNR 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 382 LLADLHKREKELSLEKEQNKRL------WDRDTGNSITIDHLR-RELDNRNMEVQRLEALLKALKSECQGQME--RQMAA 452
Cdd:PRK01156 254 YESEIKTAESDLSMELEKNNYYkeleerHMKIINDPVYKNRNYiNDYFKYKNDIENKKQILSNIDAEINKYHAiiKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 453 IQG-------KNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSR 525
Cdd:PRK01156 334 LQKdyndyikKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 526 VDLKLQELQhlknegDHLRNVQTECEALKLQMTEKDKVIEILRQQ-----------IENMTQLVGQHGRTAGAMQVEKAQ 594
Cdd:PRK01156 414 INVKLQDIS------SKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcgttlgEEKSNHIINHYNEKKSRLEEKIRE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 595 LEKEINDRRMELKELKILKD--------KKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSR 666
Cdd:PRK01156 488 IEIEVKDIDEKIVDLKKRKEyleseeinKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKR 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 667 SELNNLSAMKVAM---GMQKQITAKRGQIDALQSKIQfleEAMTNANKEKHFLKEEKSKLSQELSTVATEKNkmagELEV 743
Cdd:PRK01156 568 TSWLNALAVISLIdieTNRSRSNEIKKQLNDLESRLQ---EIEIGFPDDKSYIDKSIREIENEANNLNNKYN----EIQE 640
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 767931831 744 LRSQERRLKEKVTNMEValdkaslQFAECQDIIQRQEQESVRL 786
Cdd:PRK01156 641 NKILIEKLRGKIDNYKK-------QIAEIDSIIPDLKEITSRI 676
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
222-371 |
1.78e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 222 ISKILRELDTEISYLKGRIFPVEDQLEALKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEKASSARS--QANSIQS 299
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELED-----LEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYEALQK 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767931831 300 QMEIIQEQARNQNSMY---MRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQE 371
Cdd:COG1579 97 EIESLKRRISDLEDEIlelMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
414-572 |
1.87e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 414 IDHLRRELDNRNMEVQRLEALLKALKSECQgQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKV--VEELTAKKMT 490
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLE-AAKTELEDLEKEIKRLElEIEEVEARIKKYEEQLGNVrnNKEYEALQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 491 LESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnVQTECEALKLQMTEKDKVIEILRQQ 570
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE------LDEELAELEAELEELEAEREELAAK 171
|
..
gi 767931831 571 IE 572
Cdd:COG1579 172 IP 173
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
499-710 |
2.06e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 499 SDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE-------------GDHLRNVQTECEALKLQMTEKDKVIE 565
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdlseeakllLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 566 ILRQQIENMTQLVGQHGRTAGAmqvekAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERL 645
Cdd:COG3206 244 ALRAQLGSGPDALPELLQSPVI-----QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASL 318
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767931831 646 RA-VKDIKQERDQLLNEVKTSRSELNNLSAMKVAM-GMQKQITAKRGQIDALQSKIQF--LEEAMTNAN 710
Cdd:COG3206 319 EAeLEALQAREASLQAQLAQLEARLAELPELEAELrRLEREVEVARELYESLLQRLEEarLAEALTVGN 387
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
295-663 |
2.54e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 295 NSIQSQMEIIQEQARNQNsmymRQLSDLESTVSQLRSE----------LREAKRMYEDKTEELEKQLVLANSELTEartE 364
Cdd:pfam10174 397 NVLQKKIENLQEQLRDKD----KQLAGLKERVKSLQTDssntdtalttLEEALSEKERIIERLKEQREREDRERLE---E 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 365 RDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKalKSECQG 444
Cdd:pfam10174 470 LESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLK--KAHNAE 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 445 QMERQMAAIQGKNESLEKVSSLTAQlESTKEM--LRKVVEELTAKKMTLESSERTISDL--TTSLQEKERAIEATNAEIT 520
Cdd:pfam10174 548 EAVRTNPEINDRIRLLEQEVARYKE-ESGKAQaeVERLLGILREVENEKNDKDKKIAELesLTLRQMKEQNKKVANIKHG 626
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 521 KLRSRVDLKLQELQHLKNEGDHLRNVQtecealKLQMTEKDKVIEILRQQIENMTQLVGQhgrTAGAMQVEKAQLEKEIN 600
Cdd:pfam10174 627 QQEMKKKGAQLLEEARRREDNLADNSQ------QLQLEELMGALEKTRQELDATKARLSS---TQQSLAEKDGHLTNLRA 697
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767931831 601 DRRMELKElkILKDKKD---AKIRELEARVSDLELEKVKLVNAGSErlraVKDIKQERDQLLNEVK 663
Cdd:pfam10174 698 ERRKQLEE--ILEMKQEallAAISEKDANIALLELSSSKKKKTQEE----VMALKREKDRLVHQLK 757
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
80-384 |
2.89e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 80 LEEYSHQVKDLQRRLNESNELHEKQkfylRQSVIDLQTKLQEMQMERDA----MADIRRReSQSQEDLRNQLQNTVHELE 155
Cdd:PRK04863 350 IERYQADLEELEERLEEQNEVVEEA----DEQQEENEARAEAAEEEVDElksqLADYQQA-LDVQQTRAIQYQQAVQALE 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 156 AAKCL----------KEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEA--SGKKICEHDSMSTLH--FRSLgsa 221
Cdd:PRK04863 425 RAKQLcglpdltadnAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAyqLVRKIAGEVSRSEAWdvAREL--- 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 222 iskiLRELDTEiSYLKGRIFPVEDQLEALK--SESQNKIELLLQQHQDR----------IEQLISEHEVEITGLTEKASS 289
Cdd:PRK04863 502 ----LRRLREQ-RHLAEQLQQLRMRLSELEqrLRQQQRAERLLAEFCKRlgknlddedeLEQLQEELEARLESLSESVSE 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 290 ARSQANSIQSQMEIIQEQaRNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVlansELTEARTERDQFS 369
Cdd:PRK04863 577 ARERRMALRQQLEQLQAR-IQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLE----RERELTVERDELA 651
|
330
....*....|....*
gi 767931831 370 QESGNLDDQLQKLLA 384
Cdd:PRK04863 652 ARKQALDEEIERLSQ 666
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
367-505 |
2.93e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 367 QF--SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDNRNMEVQRLEALLKALkSECQG 444
Cdd:PRK09039 41 QFflSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDS-------VANLRASLSAAEAERSRLQALLAEL-AGAGA 112
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767931831 445 QMERQMAAIQGKNESLEKVSS--------LTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSL 505
Cdd:PRK09039 113 AAEGRAGELAQELDSEKQVSAralaqvelLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
277-519 |
3.28e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 277 EVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMR---QLSDLESTVSQLRSELREAKRMYEDKTEELEKQLvl 353
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNElqaELEALQAEIDKLQAEIAEAEAEIEERREELGERA-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 354 anseltearterdQFSQESGNLDDQLQKLL-----ADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEV 428
Cdd:COG3883 93 -------------RALYRSGGSVSYLDVLLgsesfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 429 QRLEALLKALKSEcqgqMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQE 507
Cdd:COG3883 160 EALKAELEAAKAE----LEAQQAEQEALLAQLSaEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
250
....*....|..
gi 767931831 508 KERAIEATNAEI 519
Cdd:COG3883 236 AAAAAAAAASAA 247
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
217-403 |
3.50e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 217 SLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRI---EQLISEHEVEITGLTEKASSARSQ 293
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKE-EKALLKQLAALERRIaalARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 294 ANSIQSQMEIIQEQARNQ-NSMYM--------------------RQLSDLESTVSQLRS---ELREAKRMYEDKTEELEK 349
Cdd:COG4942 92 IAELRAELEAQKEELAELlRALYRlgrqpplalllspedfldavRRLQYLKYLAPARREqaeELRADLAELAALRAELEA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 767931831 350 QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRL 403
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
80-488 |
3.58e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 80 LEEYSHQVKDLQRRLNESNELHEKqkfyLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKc 159
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEE----EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA- 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 160 LKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEhDSMSTLHFRSLGSAISKILRELDTEISYLKGR 239
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE-AALEAALAAALQNIVVEDDEVAAAAIEYLKAA 569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 240 I-----FPVEDQLEALKSESQNKIELL----------LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEII 304
Cdd:COG1196 570 KagratFLPLDKIRARAALAAALARGAigaavdlvasDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV 649
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 305 ---QEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK 381
Cdd:COG1196 650 tleGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 382 LLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALlkalksecqgqmerQMAAIQGKNESLE 461
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPV--------------NLLAIEEYEELEE 795
|
410 420 430
....*....|....*....|....*....|
gi 767931831 462 KVSSLTAQ---LESTKEMLRKVVEELTAKK 488
Cdd:COG1196 796 RYDFLSEQredLEEARETLEEAIEEIDRET 825
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
587-772 |
3.85e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.66 E-value: 3.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 587 AMQVEKAQLEKEINDRRMELKELKilkdkkdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSR 666
Cdd:COG1340 5 ELSSSLEELEEKIEELREEIEELK-------EKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 667 SELNNLSA--------MKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA----NKEKHFLK-----EEKSKLSQELST 729
Cdd:COG1340 78 EERDELNEklnelreeLDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEvlspEEEKELVEkikelEKELEKAKKALE 157
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767931831 730 VATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAEC 772
Cdd:COG1340 158 KNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIEL 200
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
244-787 |
4.49e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 244 EDQLEALKsESQNKIELLLQQHQDRIEQLISEHEV------EITGLTEKASSARSQANSIQSQMEII---------QEQA 308
Cdd:pfam01576 11 EEELQKVK-ERQQKAESELKELEKKHQQLCEEKNAlqeqlqAETELCAEAEEMRARLAARKQELEEIlhelesrleEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 309 RNQNSMYMR-----QLSDLESTVSQ---LRSELREAKRMYEDKTEELEKQLVL---ANSELT-EARTERDQFSQESGNLD 376
Cdd:pfam01576 90 RSQQLQNEKkkmqqHIQDLEEQLDEeeaARQKLQLEKVTTEAKIKKLEEDILLledQNSKLSkERKLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 377 DQ------LQKL----------LADLHKREKELSLEKEQNKRLWDRDTGNsitidhLRRELDNRNMEVQRLEALLKALKS 440
Cdd:pfam01576 170 EEeekaksLSKLknkheamisdLEERLKKEEKGRQELEKAKRKLEGESTD------LQEQIAELQAQIAELRAQLAKKEE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 441 ECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKemlrkvvEELTAKKMTLESSERTISDLTTSLQ----EKERAIEATN 516
Cdd:pfam01576 244 ELQAALARLEEETAQKNNALKKIRELEAQISELQ-------EDLESERAARNKAEKQRRDLGEELEalktELEDTLDTTA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 517 AEiTKLRSRvdlKLQELQHLKNEGDHLRNVQtecEALKLQMTEKDKvieilrQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
Cdd:pfam01576 317 AQ-QELRSK---REQEVTELKKALEEETRSH---EAQLQEMRQKHT------QALEELTEQLEQAKRNKANLEKAKQALE 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 597 KEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSAMK 676
Cdd:pfam01576 384 SENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDV 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 677 VAMGMQKQITAKRGQID-----ALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRL 751
Cdd:pfam01576 464 SSLESQLQDTQELLQEEtrqklNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEAL 543
|
570 580 590
....*....|....*....|....*....|....*.
gi 767931831 752 KEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLK 787
Cdd:pfam01576 544 EEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQ 579
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
482-793 |
5.26e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 482 EELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEA-LKLQMTEK 560
Cdd:PLN02939 114 EQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDArIKLAAQEK 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 561 DKViEILRQQIENMTQLVGQHGRTAGA-----------MQVEKAQLEKEINDRRMELKELK-----ILKDKK-----DAK 619
Cdd:PLN02939 194 IHV-EILEEQLEKLRNELLIRGATEGLcvhslskeldvLKEENMLLKDDIQFLKAELIEVAeteerVFKLEKersllDAS 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 620 IRELEARVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRSElnnlsamKVAMGMQkqitakrgQIDALQSKI 699
Cdd:PLN02939 273 LRELESKFIVAQEDVSKLSPLQYDCWWE----KVENLQDLLDRATNQVE-------KAALVLD--------QNQDLRDKV 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 700 QFLEEAMTNANkekhflkeeKSKLSQELSTVATEKNKMAGELEVLRSQErrlkekvTNMEVALDKASLQfaECQDIIQRQ 779
Cdd:PLN02939 334 DKLEASLKEAN---------VSKFSSYKVELLQQKLKLLEERLQASDHE-------IHSYIQLYQESIK--EFQDTLSKL 395
|
330
....*....|....
gi 767931831 780 EQESVRLKLQHTLD 793
Cdd:PLN02939 396 KEESKKRSLEHPAD 409
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
74-453 |
6.03e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 74 EHFERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDamaDIRRRESQSQEDLRnQLQNTVHE 153
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE---ELQQRLAELEEELE-EAQEELEE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 154 LEAakclKEDMLKDSNTQIEQLRKmmLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTLHFRSLGSAIskILRELDTEI 233
Cdd:COG4717 225 LEE----ELEQLENELEAAALEER--LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLA--LLFLLLARE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 234 SYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLtEKASSARSQANSIQSQMEIIQEQARNQNS 313
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRI-EELQELLREAEELEEELQLEELEQEIAAL 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 314 MYMRQLSDLES---------TVSQLRSELREAKRMYEDKTEELEKQLVLANSEltEARTERDQFSQESGNLDDQLQKLLA 384
Cdd:COG4717 376 LAEAGVEDEEElraaleqaeEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELRE 453
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767931831 385 DLHKREKELSlEKEQNKRLWDRDTgnsiTIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAI 453
Cdd:COG4717 454 ELAELEAELE-QLEEDGELAELLQ----ELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPV 517
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
269-488 |
6.63e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 6.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 269 IEQLISEHEVEITGLTEKASSARSQANSIQSQMEiiqeqarnqnsmyMRQLSDLESTVSQLRSELREAKRMYEDKTEELE 348
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEE-------------EEEIRRLEEQVERLEAEVEELEAELEEKDERIE 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 349 KqlvlANSELTEARTERDQfsqesgnlddqlqklladLHKREKELS-LEKEqnkrlwdrdtgnsitIDHLRRELDNRNME 427
Cdd:COG2433 445 R----LERELSEARSEERR------------------EIRKDREISrLDRE---------------IERLERELEEERER 487
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767931831 428 VQRLEALLKALKsecqgqmerQMAAIQGKNE--SLEKVSSLtaqlesTKEMLRKVVEELTAKK 488
Cdd:COG2433 488 IEELKRKLERLK---------ELWKLEHSGElvPVKVVEKF------TKEAIRRLEEEYGLKE 535
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
480-622 |
6.90e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 480 VVEEltAKKMTLESSERtISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnVQTECEALKLQMTE 559
Cdd:PRK00409 503 IIEE--AKKLIGEDKEK-LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK------LQEEEDKLLEEAEK 573
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767931831 560 K-DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE--KEINDRRMELKELKILKDKKDAKIRE 622
Cdd:PRK00409 574 EaQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEarKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
329-689 |
7.21e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 7.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 329 LRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDT 408
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 409 GNSITIDHLRRELDNRNMEVQRLEALLKAL---KSECQGQMER-----QMAAIQGKNESLEKvSSLTAQLESTKEMLRKV 480
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEEDIKTLtqrVLERETELERmkeraKKAGAQRKEEEAER-KQLQAKLQQTEEELRSL 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 481 VEELTAKK----------MTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnvqtec 550
Cdd:pfam07888 191 SKEFQELRnslaqrdtqvLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEE----------- 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 551 eaLKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQL--EKEINDRRMELKELKILKdkKDAKIRELEARVS 628
Cdd:pfam07888 260 --LSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWaqERETLQQSAEADKDRIEK--LSAELQRLEERLQ 335
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767931831 629 DLELEKVKLVnagserlravKDIKQERDQLLNEVKTSRSELNNL-SAMKVAMGMQKQITAKR 689
Cdd:pfam07888 336 EERMEREKLE----------VELGREKDCNRVQLSESRRELQELkASLRVAQKEKEQLQAEK 387
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
262-768 |
7.47e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.11 E-value: 7.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANsiqsqmeiiQEQARNQN-SMYMRQLSDLESTVSQLRSELREAKRMY 340
Cdd:pfam05557 11 LSQLQNEKKQMELEHKRARIELEKKASALKRQLD---------RESDRNQElQKRIRLLEKREAEAEEALREQAELNRLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 341 EDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRE 420
Cdd:pfam05557 82 KKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 421 LDNRNMEVQRLEALLKALKSECQGQMErqmaaIQGKNESLEKVssltAQLESTKEMLRKVVEELTAKKMTLESSERTISD 500
Cdd:pfam05557 162 QSSLAEAEQRIKELEFEIQSQEQDSEI-----VKNSKSELARI----PELEKELERLREHNKHLNENIENKLLLKEEVED 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 501 LTTSLQEKERAieatNAEITKLRSRVDLKLQELQHLKNEGdhlrnvQTECEALKLQMTEKDKVIEI------LRQQIENM 574
Cdd:pfam05557 233 LKRKLEREEKY----REEAATLELEKEKLEQELQSWVKLA------QDTGLNLRSPEDLSRRIEQLqqreivLKEENSSL 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 575 TQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVS---------DLELEKVKLVNAGSERL 645
Cdd:pfam05557 303 TSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDgyrailesyDKELTMSNYSPQLLERI 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 646 RAVKDIKQERDQLLNEVKTSRSELnnlsamkvamgmQKQITAKRGQIDALQSKIQFLEEamTNANKEKHFLKEEKSKLSQ 725
Cdd:pfam05557 383 EEAEDMTQKMQAHNEEMEAQLSVA------------EEELGGYKQQAQTLERELQALRQ--QESLADPSYSKEEVDSLRR 448
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 767931831 726 ELSTvateknkmagelevLRSQERRLKEKVTNMEVALDKASLQ 768
Cdd:pfam05557 449 KLET--------------LELERQRLREQKNELEMELERRCLQ 477
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
345-441 |
8.14e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 8.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 345 EELEKQLVLANSELTEARTERDQFSQESgnlddqlqklLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNR 424
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQDEASFER----------LAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQR 483
|
90
....*....|....*..
gi 767931831 425 NMEVQRLEALLKALKSE 441
Cdd:COG0542 484 YGKIPELEKELAELEEE 500
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
226-399 |
8.42e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 8.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 226 LRELDTEISYLKGRIFPVEDQLEALksesQNKIELLLQQHQDrIEQLISEHEVEITGLTEKASSARSQansIQSQMEIIQ 305
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDAL----QAELEELNEEYNE-LQAELEALQAEIDKLQAEIAEAEAE---IEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 306 EQARNQ------------------------NSMYMRQLSD----LESTVSQLRSELREAKRMYEDKTEELEKQLVLANSE 357
Cdd:COG3883 90 ERARALyrsggsvsyldvllgsesfsdfldRLSALSKIADadadLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 767931831 358 LTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQ 399
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
354-751 |
8.43e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 40.17 E-value: 8.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 354 ANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELS----LEKEQNKRLwdrDTGNSITIDHLRRELDNRNMEVQ 429
Cdd:PRK10246 168 ERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASgvalLTPEQVQSL---TASLQVLTDEEKQLLTAQQQQQQ 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 430 RLEALLKalKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTK--EMLRKVVEELTAKKMTLESSERTISDLTTSLQE 507
Cdd:PRK10246 245 SLNWLTR--LDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQpaRQLRPHWERIQEQSAALAHTRQQIEEVNTRLQS 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 508 K-----------ERAIEATNAEITKLRS------RVDLKLQEL-------QHLKNEGDHLRNVQTECEALK--------- 554
Cdd:PRK10246 323 TmalrarirhhaAKQSAELQAQQQSLNTwlaehdRFRQWNNELagwraqfSQQTSDREQLRQWQQQLTHAEqklnalpai 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 555 -LQMTEKDKVIEI--------LRQ-------QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKilKDKKDA 618
Cdd:PRK10246 403 tLTLTADEVAAALaqhaeqrpLRQrlvalhgQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKT--QQLADV 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 619 K-IRELEARVSDLELEKVKLVNA------GSERLRAVK--------DIKQERDQLLNEVKTSRSELnnlsamkvamgmqk 683
Cdd:PRK10246 481 KtICEQEARIKDLEAQRAQLQAGqpcplcGSTSHPAVEayqalepgVNQSRLDALEKEVKKLGEEG-------------- 546
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767931831 684 qiTAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRL 751
Cdd:PRK10246 547 --AALRGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHERQL 612
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
432-704 |
8.55e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 8.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 432 EALLKALKSEcQGQMERQMAAIQGKNESL-EKVSSLTAQLEstkeMLRKVVEELTA-KKMTLESSERTISDLTTSLQEKE 509
Cdd:COG3096 835 EAELAALRQR-RSELERELAQHRAQEQQLrQQLDQLKEQLQ----LLNKLLPQANLlADETLADRLEELREELDAAQEAQ 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 510 RAIEATNAEITKLRSRVDLklqelqhlknegdhLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQhgRTAGAMQ 589
Cdd:COG3096 910 AFIQQHGKALAQLEPLVAV--------------LQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQR--RPHFSYE 973
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931831 590 VEKAQLEK--EINDR-RMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQE------------ 654
Cdd:COG3096 974 DAVGLLGEnsDLNEKlRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQEleelgvqadaea 1053
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 767931831 655 -------RDQLLNEVKTSRSELNNLsamkvamgmQKQITAKRGQIDALQSKIQFLEE 704
Cdd:COG3096 1054 eerarirRDELHEELSQNRSRRSQL---------EKQLTRCEAEMDSLQKRLRKAER 1101
|
|
| |
