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Conserved domains on  [gi|755519340|ref|XP_011248800|]
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zinc finger, imprinted 1 isoform X2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
148-349 2.39e-08

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 56.24  E-value: 2.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 148 TTTPQSAPSEKPTSGKDVEGKPQTMRSSSTNPKRKPARQGKNHFKCKECGKTFNQTLHLVEHER--IHTGE--KPHKCD- 222
Cdd:COG5048  247 SLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPy 326

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 223 -TCGKSFRHLSYFLTHYRIHTGVRPYKCK--ECGKAFNSSSTLNNHCRIH-----SGEKPFKCD--ECGKTFKQSTKLTR 292
Cdd:COG5048  327 sLCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLLNNEPPQSLQqykdlKNDKKSETLsnSCIRNFKRDSNLSL 406

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 755519340 293 HQRIHTGEKP--YKCGECNKCFGRSSSLREHKRIHTGEKPYCCQVCGKtFRVNSHLSEH 349
Cdd:COG5048  407 HIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS-FRRDLDLSNH 464
KRAB super family cl42959
krueppel associated box;
1-27 4.87e-06

krueppel associated box;


The actual alignment was detected with superfamily member smart00349:

Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 44.12  E-value: 4.87e-06
                           10        20
                   ....*....|....*....|....*..
gi 755519340     1 MLENYENLISVEYYIFKPKLITRLEQG 27
Cdd:smart00349  30 MLENYSNLVSLGFQVPKPDLISQLEQG 56
PRK13335 super family cl31400
superantigen-like protein SSL3; Reviewed;
59-191 3.81e-05

superantigen-like protein SSL3; Reviewed;


The actual alignment was detected with superfamily member PRK13335:

Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 45.89  E-value: 3.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340  59 TGDNSTKAEIRKPDNSKTTSLEKQKAADQGRGSQSLrAEKTSKsddrPSQNKEKCASTSTTEASKTSIPgNKENESAIPG 138
Cdd:PRK13335  56 AGANSATTQAANTRQERTPKLEKAPNTNEEKTSASK-IEKISQ----PKQEEQKSLNISATPAPKQEQS-QTTTESTTPK 129

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755519340 139 TS-SGQTSAATTTP-QSAPSEKPTS------GKDVEGKPQTMRSSSTnpkrKPARQGKNHF 191
Cdd:PRK13335 130 TKvTTPPSTNTPQPmQSTKSDTPQSptikqaQTDMTPKYEDLRAYYT----KPSFEFEKQF 186
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
148-349 2.39e-08

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 56.24  E-value: 2.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 148 TTTPQSAPSEKPTSGKDVEGKPQTMRSSSTNPKRKPARQGKNHFKCKECGKTFNQTLHLVEHER--IHTGE--KPHKCD- 222
Cdd:COG5048  247 SLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPy 326

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 223 -TCGKSFRHLSYFLTHYRIHTGVRPYKCK--ECGKAFNSSSTLNNHCRIH-----SGEKPFKCD--ECGKTFKQSTKLTR 292
Cdd:COG5048  327 sLCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLLNNEPPQSLQqykdlKNDKKSETLsnSCIRNFKRDSNLSL 406

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 755519340 293 HQRIHTGEKP--YKCGECNKCFGRSSSLREHKRIHTGEKPYCCQVCGKtFRVNSHLSEH 349
Cdd:COG5048  407 HIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS-FRRDLDLSNH 464
KRAB smart00349
krueppel associated box;
1-27 4.87e-06

krueppel associated box;


Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 44.12  E-value: 4.87e-06
                           10        20
                   ....*....|....*....|....*..
gi 755519340     1 MLENYENLISVEYYIFKPKLITRLEQG 27
Cdd:smart00349  30 MLENYSNLVSLGFQVPKPDLISQLEQG 56
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
59-191 3.81e-05

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 45.89  E-value: 3.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340  59 TGDNSTKAEIRKPDNSKTTSLEKQKAADQGRGSQSLrAEKTSKsddrPSQNKEKCASTSTTEASKTSIPgNKENESAIPG 138
Cdd:PRK13335  56 AGANSATTQAANTRQERTPKLEKAPNTNEEKTSASK-IEKISQ----PKQEEQKSLNISATPAPKQEQS-QTTTESTTPK 129

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755519340 139 TS-SGQTSAATTTP-QSAPSEKPTS------GKDVEGKPQTMRSSSTnpkrKPARQGKNHF 191
Cdd:PRK13335 130 TKvTTPPSTNTPQPmQSTKSDTPQSptikqaQTDMTPKYEDLRAYYT----KPSFEFEKQF 186
zf-H2C2_2 pfam13465
Zinc-finger double domain;
205-230 9.57e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 39.28  E-value: 9.57e-05
                          10        20
                  ....*....|....*....|....*.
gi 755519340  205 HLVEHERIHTGEKPHKCDTCGKSFRH 230
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
148-349 2.39e-08

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 56.24  E-value: 2.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 148 TTTPQSAPSEKPTSGKDVEGKPQTMRSSSTNPKRKPARQGKNHFKCKECGKTFNQTLHLVEHER--IHTGE--KPHKCD- 222
Cdd:COG5048  247 SLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPy 326

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 223 -TCGKSFRHLSYFLTHYRIHTGVRPYKCK--ECGKAFNSSSTLNNHCRIH-----SGEKPFKCD--ECGKTFKQSTKLTR 292
Cdd:COG5048  327 sLCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLLNNEPPQSLQqykdlKNDKKSETLsnSCIRNFKRDSNLSL 406

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 755519340 293 HQRIHTGEKP--YKCGECNKCFGRSSSLREHKRIHTGEKPYCCQVCGKtFRVNSHLSEH 349
Cdd:COG5048  407 HIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS-FRRDLDLSNH 464
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
246-398 3.25e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 49.69  E-value: 3.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 246 PYKCKECGKAFNSSSTLNNH--CRIHSGE--KPFKCDE--CGKTFKQSTKLTRHQRIHTGEKPYKC--GECNKCFGRSS- 316
Cdd:COG5048  289 PIKSKQCNISFSRSSPLTRHlrSVNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLLn 368

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 317 ----SLREHKRIHTGEKPYCCQV--CGKTFRVNSHLSEHQRLHLKVKP--YKCDKCGKHFRNSSYLTEHKQIHVPGARVD 388
Cdd:COG5048  369 neppQSLQQYKDLKNDKKSETLSnsCIRNFKRDSNLSLHIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLL 448

                        170
                 ....*....|
gi 755519340 389 CPECGKVFAC 398
Cdd:COG5048  449 CSILKSFRRD 458
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
159-473 3.64e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 49.31  E-value: 3.64e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 159 PTSGKDVEGKPQTMRSSStNPKRKPARQGKNHFKCKECGKTFNQTLHLVEHERIHTGEKPHKC--DTCGKSF-RHLSYFL 235
Cdd:COG5048    3 LTSSQSSSSNNSVLSSTP-KSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFsRPLELSR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 236 THYRIHTGVRPYKCKECGKAFNSSSTLNNHCRIHSGEKPFKCDECGKTFKQSTKLTRHQRIHTGEKPYKCGECNKCFGRS 315
Cdd:COG5048   82 HLRTHHNNPSDLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNT 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 316 S----------------------SLREHKRIHTGEKPYCCQVCGKTFRVNSHLSEHQRLHLKVKPYKCDKCG----KHFR 369
Cdd:COG5048  162 PqsnslhpplpanslskdpssnlSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSqlspKSLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 370 NSSYLTEHKQIHVPGARVDCPECGKVFACKVALLKH---QKRHEANSRYRCKGCGKTFRCKSSIQRHER--LHAGE--KP 442
Cdd:COG5048  242 SQSPSSLSSSDSSSSASESPRSSLPTASSQSSSPNEsdsSSEKGFSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKP 321

                        330       340       350
                 ....*....|....*....|....*....|...
gi 755519340 443 FVC--HKCDKGFTDKTTLNNHLKIHSGDRPDPC 473
Cdd:COG5048  322 FSCpySLCGKLFSRNDALKRHILLHTSISPAKE 354
KRAB smart00349
krueppel associated box;
1-27 4.87e-06

krueppel associated box;


Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 44.12  E-value: 4.87e-06
                           10        20
                   ....*....|....*....|....*..
gi 755519340     1 MLENYENLISVEYYIFKPKLITRLEQG 27
Cdd:smart00349  30 MLENYSNLVSLGFQVPKPDLISQLEQG 56
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
105-446 1.78e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.00  E-value: 1.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 105 RPSQNKEKCASTSTTEASKTSIPGNKENeSAIPGTSSGQTSAATTTPQSAPSEKPTSGKDVEGKPQTMRSSSTNPKRKPA 184
Cdd:COG5048   89 NPSDLNSKSLPLSNSKASSSSLSSSSSN-SNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSL 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 185 RQGKNHFkCKECGKTFNQTLHLveHERIHTGEKPHKCDTCGKSFRHLSYFLTHYRIHTGVRPYKCKECGKAFNSSSTLNN 264
Cdd:COG5048  168 HPPLPAN-SLSKDPSSNLSLLI--SSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQS 244

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 265 HCRIHSGEKPFKCDECGKTFKQSTKLTRHQRIHTGE-------KPYKCGECNKCFGRSSSLREHKR--IHTGE--KPYCC 333
Cdd:COG5048  245 PSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSC 324

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 334 --QVCGKTFRVNSHLSEHQRLHLKVKPYKC--DKCGKHFRNSSY-----LTEHKQIHVPGARVDCPECGKVFACK----V 400
Cdd:COG5048  325 pySLCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLLNneppqSLQQYKDLKNDKKSETLSNSCIRNFKrdsnL 404

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 755519340 401 ALLKHQKRHEANSRYRCKGCGKTFRCKSSIQRHERLHAGEKPFVCH 446
Cdd:COG5048  405 SLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCS 450
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
59-191 3.81e-05

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 45.89  E-value: 3.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340  59 TGDNSTKAEIRKPDNSKTTSLEKQKAADQGRGSQSLrAEKTSKsddrPSQNKEKCASTSTTEASKTSIPgNKENESAIPG 138
Cdd:PRK13335  56 AGANSATTQAANTRQERTPKLEKAPNTNEEKTSASK-IEKISQ----PKQEEQKSLNISATPAPKQEQS-QTTTESTTPK 129

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755519340 139 TS-SGQTSAATTTP-QSAPSEKPTS------GKDVEGKPQTMRSSSTnpkrKPARQGKNHF 191
Cdd:PRK13335 130 TKvTTPPSTNTPQPmQSTKSDTPQSptikqaQTDMTPKYEDLRAYYT----KPSFEFEKQF 186
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 271-349 6.71e-05

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 45.09  E-value: 6.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 271 GEKPFKCD--ECGKTFKQSTKLTRHqRIHtgekpykcGECNKCFGRSSSLREHKRIHTGEKPYCCQVCGKTFRVNSHLSE 348
Cdd:COG5189  346 DGKPYKCPveGCNKKYKNQNGLKYH-MLH--------GHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416


                 .
gi 755519340 349 H 349
Cdd:COG5189  417 H 417
zf-H2C2_2 pfam13465
Zinc-finger double domain;
205-230 9.57e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 39.28  E-value: 9.57e-05
                          10        20
                  ....*....|....*....|....*.
gi 755519340  205 HLVEHERIHTGEKPHKCDTCGKSFRH 230
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
262-286 1.12e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 39.28  E-value: 1.12e-04
                          10        20
                  ....*....|....*....|....*
gi 755519340  262 LNNHCRIHSGEKPFKCDECGKTFKQ 286
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
317-340 2.96e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.12  E-value: 2.96e-04
                          10        20
                  ....*....|....*....|....
gi 755519340  317 SLREHKRIHTGEKPYCCQVCGKTF 340
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 299-378 9.43e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 41.63  E-value: 9.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 299 GEKPYKCG--ECNKCFGRSSSLREHKRihtgeKPYCCQVCGKTFRVNSHlsehQRLHLKVKPYKCDKCGKHFRNSSYLTE 376
Cdd:COG5189  346 DGKPYKCPveGCNKKYKNQNGLKYHML-----HGHQNQKLHENPSPEKM----NIFSAKDKPYRCEVCDKRYKNLNGLKY 416


                 ..
gi 755519340 377 HK 378
Cdd:COG5189  417 HR 418
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 275-297 1.04e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 36.51  E-value: 1.04e-03
                          10        20
                  ....*....|....*....|...
gi 755519340  275 FKCDECGKTFKQSTKLTRHQRIH 297
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
290-312 1.45e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.20  E-value: 1.45e-03
                          10        20
                  ....*....|....*....|...
gi 755519340  290 LTRHQRIHTGEKPYKCGECNKCF 312
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSF 24
zf-H2C2_2 pfam13465
Zinc-finger double domain;
237-258 2.49e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 2.49e-03
                          10        20
                  ....*....|....*....|..
gi 755519340  237 HYRIHTGVRPYKCKECGKAFNS 258
Cdd:pfam13465   5 HMRTHTGEKPYKCPECGKSFKS 26
PRK08581 PRK08581
amidase domain-containing protein;
49-192 9.81e-03

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 38.62  E-value: 9.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340  49 SRSDTSAGKKTGDNSTKAEiRKPDNSKTTSLEKQKAADQgrgSQSLRAEKTSKSDDRPSQNKEKCASTSTTEASKTSIPG 128
Cdd:PRK08581 142 SEKSTNDSNKNSDSSIKND-TDTQSSKQDKADNQKAPSS---NNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSS 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755519340 129 NKENE----SAIPGTSSGQTSAATTTPQS--APSEKPTSGKDVEGKPQTMRSSSTNPKRKPARQGKNHFK 192
Cdd:PRK08581 218 SKDNQsmsdSALDSILDQYSEDAKKTQKDyaSQSKKDKTETSNTKNPQLPTQDELKHKSKPAQSFENDVN 287
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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