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Conserved domains on  [gi|578838890|ref|XP_006724895|]
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protein FAM3A isoform X2 [Homo sapiens]

Protein Classification

FAM3C domain-containing protein( domain architecture ID 10195373)

FAM3C (FAM3 Metabolism Regulating Signaling Molecule C) domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ILEI_FAM3C cd13940
Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) ...
 55-232 5.01e-116

Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) has been identifed as a protein involved in the epithelial-mesenchymal transition (EMT) and in processes associated with metastasis formation and the progression of cancer. The protein had initially been predicted to be a member of the four-helical cytokine family, hence the FAM3C designation. ILEI has been found to be widely expressed, and to be involved in retinal development.


:

Pssm-ID: 260114  Cd Length: 171  Bit Score: 328.46  E-value: 5.01e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890  55 RKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNagplppdtGVSGELIEARAFDMW 134
Cdd:cd13940    2 PKYKCGLSKPCPEDHFAFRIISGAANVVGPKICFEGKIIMSSVLNNVGRGLNIALVN--------GETGEVLKTGFFDMY 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890 135 AGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFRDSWVFVGAKGVQNKSPFEQHVKNSKH 214
Cdd:cd13940   74 SGDVKPLLEFLKSIKPGSIVLVASFDDPATKLNDEARKLFAELGSSSIKSLGFRDNWVFVGGKGIKTKSPFEKHIKNDKD 153

                        170
                 ....*....|....*...
gi 578838890 215 SNKYEGWPEALEMEGCIP 232
Cdd:cd13940  154 TNKYEGWPEMIEMEGCIP 171
 
Name Accession Description Interval E-value
ILEI_FAM3C cd13940
Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) ...
 55-232 5.01e-116

Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) has been identifed as a protein involved in the epithelial-mesenchymal transition (EMT) and in processes associated with metastasis formation and the progression of cancer. The protein had initially been predicted to be a member of the four-helical cytokine family, hence the FAM3C designation. ILEI has been found to be widely expressed, and to be involved in retinal development.


Pssm-ID: 260114  Cd Length: 171  Bit Score: 328.46  E-value: 5.01e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890  55 RKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNagplppdtGVSGELIEARAFDMW 134
Cdd:cd13940    2 PKYKCGLSKPCPEDHFAFRIISGAANVVGPKICFEGKIIMSSVLNNVGRGLNIALVN--------GETGEVLKTGFFDMY 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890 135 AGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFRDSWVFVGAKGVQNKSPFEQHVKNSKH 214
Cdd:cd13940   74 SGDVKPLLEFLKSIKPGSIVLVASFDDPATKLNDEARKLFAELGSSSIKSLGFRDNWVFVGGKGIKTKSPFEKHIKNDKD 153

                        170
                 ....*....|....*...
gi 578838890 215 SNKYEGWPEALEMEGCIP 232
Cdd:cd13940  154 TNKYEGWPEMIEMEGCIP 171
ILEI pfam15711
Interleukin-like EMT inducer; ILEI is a family of proteins found in vertebrates. It is heavily ...
 103-198 1.51e-31

Interleukin-like EMT inducer; ILEI is a family of proteins found in vertebrates. It is heavily involved in the process of the transition from epithelial to mesenchymal tissue - EMT - during all of embryonic development, cancer progression, metastasis, and chronic inflammation/fibrosis. ILEI is upregulated exclusively at the level of translation, and abnormal ILEI expression, ie cytoplasmic over-expression instead of vesicular localization, is associated with EMT in human cancerous tissue. In order to induce and maintain the EMT of hepatocytes in a TGF-beta-independent fashion ILEI needs the cooperation of oncogenic Ras.


Pssm-ID: 464817  Cd Length: 89  Bit Score: 111.20  E-value: 1.51e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890  103 RGLNIALVNAgplppdtgVSGELIEARAFDMW-AGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRN 181
Cdd:pfam15711   1 RGINVVVVDA--------CTGKVLDSKSFDTYsYSDSSRLANFLKSIPDGSIVLIATKDEASSKLSDEARKALESLGSSK 72

                          90
                  ....*....|....*..
gi 578838890  182 AKELAFRDSWVFVGAKG 198
Cdd:pfam15711  73 IDNLGFRDSWAFIGFKG 89
 
Name Accession Description Interval E-value
ILEI_FAM3C cd13940
Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) ...
 55-232 5.01e-116

Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) has been identifed as a protein involved in the epithelial-mesenchymal transition (EMT) and in processes associated with metastasis formation and the progression of cancer. The protein had initially been predicted to be a member of the four-helical cytokine family, hence the FAM3C designation. ILEI has been found to be widely expressed, and to be involved in retinal development.


Pssm-ID: 260114  Cd Length: 171  Bit Score: 328.46  E-value: 5.01e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890  55 RKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNagplppdtGVSGELIEARAFDMW 134
Cdd:cd13940    2 PKYKCGLSKPCPEDHFAFRIISGAANVVGPKICFEGKIIMSSVLNNVGRGLNIALVN--------GETGEVLKTGFFDMY 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890 135 AGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFRDSWVFVGAKGVQNKSPFEQHVKNSKH 214
Cdd:cd13940   74 SGDVKPLLEFLKSIKPGSIVLVASFDDPATKLNDEARKLFAELGSSSIKSLGFRDNWVFVGGKGIKTKSPFEKHIKNDKD 153

                        170
                 ....*....|....*...
gi 578838890 215 SNKYEGWPEALEMEGCIP 232
Cdd:cd13940  154 TNKYEGWPEMIEMEGCIP 171
PANDER_FAM3B cd13939
Pancreatic derived factor; FAM3B or PANDER (PANcreatic DERived factor) has been identifed as a ...
 55-233 4.48e-54

Pancreatic derived factor; FAM3B or PANDER (PANcreatic DERived factor) has been identifed as a regulator of glucose homeostasis and beta cell function. The protein is expressed in the endocrine pancreas and co-secreted with insulin in response to glucose, particularly under conditions of insulin resistance. The protein had initially been predicted to be a member of the four-helical cytokine family, hence the FAM3B designation. PANDER induces apoptosis of insulin-secreting beta-cells when over-expressed in vitro. It has been associated with the progression of type 2 diabetes by downregulating beta cell function as well as insulin sensitivity in the liver.


Pssm-ID: 260113  Cd Length: 175  Bit Score: 171.64  E-value: 4.48e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890  55 RKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNAGplppdtgvSGELIEARAFDMW 134
Cdd:cd13939    1 KRQKCDHWSPCAPNQYAYRIRSGGGKDIMPEICFEDNMLITGKEGNSNRGINIAVVSYE--------TGKVVATKYFDMY 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890 135 AGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFRDSWVFVGAKGVQNKSPFEQ----HV 209
Cdd:cd13939   73 EGDFSGpMIEFINKIPKKSLVFVVTHDDGSTKLKDPAKKAIEDLGSKEIRNLKFRSAWVFIAAKGFQLPDNIEKekinHS 152

                        170       180
                 ....*....|....*....|....
gi 578838890 210 KNSKhsNKYEGWPEALEMEGCIPR 233
Cdd:cd13939  153 DGSK--NRYSGWPAEIQIEGCIPK 174
PANDER_like cd13936
Domains similar to the Pancreatic-derived factor; FAM3B or PANDER (PANcreatic DERived factor) ...
 70-231 7.51e-36

Domains similar to the Pancreatic-derived factor; FAM3B or PANDER (PANcreatic DERived factor) has been identifed as a regulator of glucose homeostasis and beta cell function. The protein is expressed in the endocrine pancreas and co-secreted with insulin in response to glucose, particularly under conditions of insulin resistance. The protein had initially been predicted to be a member of the four-helical cytokine family, hence the FAM3B designation. This wider family contains FAM3B and FAM4C, N-terminal domains of N-acetylglucosaminyltransferases, and domains in poorly characterized proteins that have been associated with deafness and the progression of cancer.


Pssm-ID: 260110  Cd Length: 149  Bit Score: 123.99  E-value: 7.51e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890  70 LAFRVVSGAANViGPKICLEDKMLMSsvKDNVGRGLNIALVNagplpPDTGvsgELIEARAFDMW-AGDVNDLLKFIRPL 148
Cdd:cd13936    1 LEVKIASGGGGN-YAKICVNGGVLFD--GDKSGRGINVVVIN-----GDTG---KVIATKTFDTYgAGASNDMIDFLNSV 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890 149 HEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFRDSWVFVGAKGvqNKSP-FEQHVKNskHSNKYEGWPEALEM 227
Cdd:cd13936   70 PPGSIVLIATKDDASKSLKDEARRALESLGSSLIQNLGFRDSWAFVGQKG--IKRPsTEQHEIS--PKNSSWGGPALIQT 145


                 ....
gi 578838890 228 EGCI 231
Cdd:cd13936  146 CFPL 149
ILEI pfam15711
Interleukin-like EMT inducer; ILEI is a family of proteins found in vertebrates. It is heavily ...
 103-198 1.51e-31

Interleukin-like EMT inducer; ILEI is a family of proteins found in vertebrates. It is heavily involved in the process of the transition from epithelial to mesenchymal tissue - EMT - during all of embryonic development, cancer progression, metastasis, and chronic inflammation/fibrosis. ILEI is upregulated exclusively at the level of translation, and abnormal ILEI expression, ie cytoplasmic over-expression instead of vesicular localization, is associated with EMT in human cancerous tissue. In order to induce and maintain the EMT of hepatocytes in a TGF-beta-independent fashion ILEI needs the cooperation of oncogenic Ras.


Pssm-ID: 464817  Cd Length: 89  Bit Score: 111.20  E-value: 1.51e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890  103 RGLNIALVNAgplppdtgVSGELIEARAFDMW-AGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRN 181
Cdd:pfam15711   1 RGINVVVVDA--------CTGKVLDSKSFDTYsYSDSSRLANFLKSIPDGSIVLIATKDEASSKLSDEARKALESLGSSK 72

                          90
                  ....*....|....*..
gi 578838890  182 AKELAFRDSWVFVGAKG 198
Cdd:pfam15711  73 IDNLGFRDSWAFIGFKG 89
PANDER_GnT-1_2_like cd13937
PANDER-like domain of N-acetylglucosaminyltransferases; O-linked-mannose beta-1, ...
 70-233 8.79e-15

PANDER-like domain of N-acetylglucosaminyltransferases; O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 participates in O-mannosyl glycosylation and may be responsible for creating GlcNAc(beta1-2)Man(alpha1-)O-Ser/Thr moieties on alpha dystroglycan and other O-mannosylated proteins. The domain characterized by this model lies N-terminal to the catalytic domain. Its function has not been determined.


Pssm-ID: 260111  Cd Length: 148  Bit Score: 69.25  E-value: 8.79e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890  70 LAFRVVSGAANVigpKICLEDKMLMSSVKDNVGRGLNIALVNagplppdtGVSGELIEARAFDMWA-GDVNDLLKFIRPL 148
Cdd:cd13937    1 LDIEVYSSKSKV---SVSVDGTTVLEDEEAEAGRGIHVVVLN--------QATGSVMAQRVFDTYSpGEDEAMILFLNMV 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890 149 HEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFRDSWVFVGAKGVQNKSpfEQHVKNSKHSnkyeGWPEALEME 228
Cdd:cd13937   70 SDGRILIFTIKDEGSFHLKDEARSLLKKLGSQKVSKLGWRDMWAMVTRKGGPVYG--EKHSKSPDLS----SWGEPVLLK 143


                 ....*
gi 578838890 229 GCIPR 233
Cdd:cd13937  144 AEVPL 148
PANDER_like_TMEM2 cd13938
PANDER-like domain of the transmembrane protein TMEM2; TMEM2 has been characterized as a ...
 95-208 3.11e-12

PANDER-like domain of the transmembrane protein TMEM2; TMEM2 has been characterized as a transmembrane protein that maps to the DFNB7-DFNB11 deafness locus on human chromosome 9. It contains a domain similar to the Pancreatic-derived factor PANDER, C-terminal to a glycine rich G8-domain. The function of the PANDER-like domain in TMEM2 has not been characterized.


Pssm-ID: 260112  Cd Length: 168  Bit Score: 62.73  E-value: 3.11e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578838890  95 SSVKDNVGRGLNIALVNagplpPDTGvsgELIEARAFDMW--AGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRK 172
Cdd:cd13938   40 SFERSWGSRGINVRVID-----EDTG---EVLESDRFDTYesEDESKRLAEFLDQIPPGRIVALAVGDEASKNLEDSARK 111

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 578838890 173 LFSELGSRNAKELAFRDSWVFVGAKG-----VQNKSPFEQH 208
Cdd:cd13938  112 KIRELGSKEIDHLGYRQPWAFVGVKGgpssaVEDRREYEGH 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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