|
Name |
Accession |
Description |
Interval |
E-value |
| beta-trefoil_Ricin_CRYBG2 |
cd23465 |
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin ... |
1690-1825 |
3.32e-86 |
|
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin domain-containing protein 2 (CRYBG2) and similar proteins; CRYBG2, also called absent in melanoma 1-like protein (AIM1L), is a beta/gamma-crystallin family protein with a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.
:
Pssm-ID: 467343 Cd Length: 136 Bit Score: 277.14 E-value: 3.32e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1690 QRRAYFRLWNAALGGFLSVPDHVEDMKAGRVVVSEPQAGGSCIWYYEDGLLKNQMAPTMSLQVIGPPSPGSKVVLWAESR 1769
Cdd:cd23465 1 QRRVYFRLRNRELGLYLAVPDGVEDMKAGRVVVTEQQEGMSHVWFYEDGLLKNQMAPTMSLQVIGPPDNGAKVVLWSETR 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 568930994 1770 LPRQTWSINELGHICSQMFEGQILDVKGGRGYDRDHVVLWEPTKDRLSQIWTVHVL 1825
Cdd:cd23465 81 QPRQTWSIQPSGHILSQMFEGMILDVKGGRTYDRDHVVLWEVSEERPSQIWDMEVL 136
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1333-1419 |
2.61e-33 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
:
Pssm-ID: 459639 Cd Length: 82 Bit Score: 123.76 E-value: 2.61e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1333 KAVVYEAPGFQGQSWEVSRDIYNLQQPEDSqspqlTSVGSLRILGGCWVGYEKEGFRGHQYLLEEGEYADWSNWGGYDEL 1412
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFN-----SRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDR 75
|
....*..
gi 568930994 1413 LTSLRVI 1419
Cdd:pfam00030 76 IGSLRPI 82
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1428-1508 |
1.89e-31 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
:
Pssm-ID: 459639 Cd Length: 82 Bit Score: 118.37 E-value: 1.89e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1428 VVLFEDMDFQGHRVEVSSALPDVELAQHGPSTQAIHVLSGVWVAYERVGFSGEQFILEKGVYRNCDDWGSGNCALGSLQP 1507
Cdd:pfam00030 2 IVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLRP 81
|
.
gi 568930994 1508 V 1508
Cdd:pfam00030 82 I 82
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1608-1688 |
4.11e-25 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
:
Pssm-ID: 459639 Cd Length: 82 Bit Score: 100.26 E-value: 4.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1608 SLSLFGLECFEGKEIELTGEVRSLQAEGFNNHVLSVRVKGGVWVVCEHSDFRGRQWLVGSCEITNWLTYSG-TQRVGSLY 1686
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGApNDRIGSLR 80
|
..
gi 568930994 1687 PI 1688
Cdd:pfam00030 81 PI 82
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1238-1319 |
1.00e-22 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
:
Pssm-ID: 459639 Cd Length: 82 Bit Score: 93.71 E-value: 1.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1238 RISLFSEEGLKGKPVTLTGDLKDSQGLERPLQVASATVTAGLWLLYPKPFFEDTPYILEPGEYPTLEAWGTSGPSVGSLK 1317
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLR 80
|
..
gi 568930994 1318 PM 1319
Cdd:pfam00030 81 PI 82
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1521-1600 |
3.28e-20 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
:
Pssm-ID: 459639 Cd Length: 82 Bit Score: 86.39 E-value: 3.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1521 KIQLFSGPNFLGDHISFEDDQASLPASFHP---QSCRVHGGSWVLFEDKNFEADQHIVSEGEFPTLTAMGCLASTVlGSL 1597
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFNsrvNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRI-GSL 79
|
...
gi 568930994 1598 RKV 1600
Cdd:pfam00030 80 RPI 82
|
|
| Crystall super family |
cl02528 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1151-1229 |
4.50e-10 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
The actual alignment was detected with superfamily member smart00247:
Pssm-ID: 470604 Cd Length: 82 Bit Score: 57.52 E-value: 4.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1151 KVILFSEPGCRGRGREVWGDIADASA---WDPVASIRVIRGCWILYEQPEFRGQKLSLPEGDVeLRALACAWSLQGFGSL 1227
Cdd:smart00247 1 KITLYEDENFQGRSYELSDDCPSLQDygsRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEY-PDYQEWGGFNDQISSI 79
|
..
gi 568930994 1228 RR 1229
Cdd:smart00247 80 RR 81
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
663-916 |
3.45e-07 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 3.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 663 SSSPKPQTCAASLTQSPEQPVVPAHLEAQSTPhVLPAvkekftGLSTVPVPPTAKGEVTVPEPPPSPSSPRRKAAPSSQS 742
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAPAPPAVPAGP-ATPG------GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 743 PCAPASPKSKFVPDPENVPSSALTQKEVYPCPSVPAHSHIPKEVLQAHGAPKTSSSRPTTVVQN---AEGGPSIKKEVGQ 819
Cdd:PHA03247 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsvAPGGDVRRRPPSR 2869
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 820 YPQNSPSPCSVP-----CKETVESPTFPAPLPPKQDEVVRDSPgnflsSPTPKGSFQSPPFAPSSSEAKESLSLEGSP-A 893
Cdd:PHA03247 2870 SPAAKPAAPARPpvrrlARPAVSRSTESFALPPDQPERPPQPQ-----APPPPQPQPQPPPPPQPQPPPPPPPRPQPPlA 2944
|
250 260
....*....|....*....|...
gi 568930994 894 SKPMGAEVSTGSQTIPDSTEGKV 916
Cdd:PHA03247 2945 PTTDPAGAGEPSGAVPQPWLGAL 2967
|
|
| PHA03378 super family |
cl33729 |
EBNA-3B; Provisional |
1035-1167 |
4.82e-04 |
|
EBNA-3B; Provisional
The actual alignment was detected with superfamily member PHA03378:
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 45.06 E-value: 4.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1035 PTPAKVTCSPMEMMKKLIAGQGPEPQPSNRPTSRLGgsllfgnlvPANKDAPALEPLGTKLSALPPHGAPGVKKVPGQLP 1114
Cdd:PHA03378 701 PTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARP---------PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAP 771
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568930994 1115 LLCSGRPPPE-KPAPIEPPEGwSPAPKTQGKLNTRPGKVILFSEPGCRGRGREV 1167
Cdd:PHA03378 772 GAPTPQPPPQaPPAPQQRPRG-APTPQPPPQAGPTSMQLMPRAAPGQQGPTKQI 824
|
|
| PRK11901 super family |
cl36081 |
hypothetical protein; Reviewed |
571-748 |
7.00e-03 |
|
hypothetical protein; Reviewed
The actual alignment was detected with superfamily member PRK11901:
Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 40.82 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 571 TSRGSGPGGTVGTTLGQPLEISTTELKNSISALAPvgvPAVDSPAQNIDIPvahpirdqGGVSDARTEESSRLQGASSVL 650
Cdd:PRK11901 99 NNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAP---PQTPNGQQRIELP--------GNISDALSQQQGQVNAASQNA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 651 LLNQTSQSQVPASSSPKPQTCAASLTQSPEQPVVPAhleAQSTPHVLPAVKekftglSTVPVPPTAKGEVTvpepppsps 730
Cdd:PRK11901 168 QGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKP---ATKKPAVNHHKT------ATVAVPPATSGKPK--------- 229
|
170
....*....|....*...
gi 568930994 731 sPRRKAAPSSQSpcAPAS 748
Cdd:PRK11901 230 -SGAASARALSS--APAS 244
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| beta-trefoil_Ricin_CRYBG2 |
cd23465 |
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin ... |
1690-1825 |
3.32e-86 |
|
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin domain-containing protein 2 (CRYBG2) and similar proteins; CRYBG2, also called absent in melanoma 1-like protein (AIM1L), is a beta/gamma-crystallin family protein with a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.
Pssm-ID: 467343 Cd Length: 136 Bit Score: 277.14 E-value: 3.32e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1690 QRRAYFRLWNAALGGFLSVPDHVEDMKAGRVVVSEPQAGGSCIWYYEDGLLKNQMAPTMSLQVIGPPSPGSKVVLWAESR 1769
Cdd:cd23465 1 QRRVYFRLRNRELGLYLAVPDGVEDMKAGRVVVTEQQEGMSHVWFYEDGLLKNQMAPTMSLQVIGPPDNGAKVVLWSETR 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 568930994 1770 LPRQTWSINELGHICSQMFEGQILDVKGGRGYDRDHVVLWEPTKDRLSQIWTVHVL 1825
Cdd:cd23465 81 QPRQTWSIQPSGHILSQMFEGMILDVKGGRTYDRDHVVLWEVSEERPSQIWDMEVL 136
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1333-1419 |
2.61e-33 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
Pssm-ID: 459639 Cd Length: 82 Bit Score: 123.76 E-value: 2.61e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1333 KAVVYEAPGFQGQSWEVSRDIYNLQQPEDSqspqlTSVGSLRILGGCWVGYEKEGFRGHQYLLEEGEYADWSNWGGYDEL 1412
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFN-----SRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDR 75
|
....*..
gi 568930994 1413 LTSLRVI 1419
Cdd:pfam00030 76 IGSLRPI 82
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1428-1508 |
1.89e-31 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
Pssm-ID: 459639 Cd Length: 82 Bit Score: 118.37 E-value: 1.89e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1428 VVLFEDMDFQGHRVEVSSALPDVELAQHGPSTQAIHVLSGVWVAYERVGFSGEQFILEKGVYRNCDDWGSGNCALGSLQP 1507
Cdd:pfam00030 2 IVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLRP 81
|
.
gi 568930994 1508 V 1508
Cdd:pfam00030 82 I 82
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1333-1419 |
1.28e-25 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 101.82 E-value: 1.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1333 KAVVYEAPGFQGQSWEVSRDIYNLQqPEDSQSpqltSVGSLRILGGCWVGYEKEGFRGHQYLLEEGEYADWSNWGGYDEL 1412
Cdd:smart00247 1 KITLYEDENFQGRSYELSDDCPSLQ-DYGSRD----NVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQ 75
|
....*..
gi 568930994 1413 LTSLRVI 1419
Cdd:smart00247 76 ISSIRRI 82
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1608-1688 |
4.11e-25 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
Pssm-ID: 459639 Cd Length: 82 Bit Score: 100.26 E-value: 4.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1608 SLSLFGLECFEGKEIELTGEVRSLQAEGFNNHVLSVRVKGGVWVVCEHSDFRGRQWLVGSCEITNWLTYSG-TQRVGSLY 1686
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGApNDRIGSLR 80
|
..
gi 568930994 1687 PI 1688
Cdd:pfam00030 81 PI 82
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1238-1319 |
1.00e-22 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
Pssm-ID: 459639 Cd Length: 82 Bit Score: 93.71 E-value: 1.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1238 RISLFSEEGLKGKPVTLTGDLKDSQGLERPLQVASATVTAGLWLLYPKPFFEDTPYILEPGEYPTLEAWGTSGPSVGSLK 1317
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLR 80
|
..
gi 568930994 1318 PM 1319
Cdd:pfam00030 81 PI 82
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1521-1600 |
3.28e-20 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
Pssm-ID: 459639 Cd Length: 82 Bit Score: 86.39 E-value: 3.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1521 KIQLFSGPNFLGDHISFEDDQASLPASFHP---QSCRVHGGSWVLFEDKNFEADQHIVSEGEFPTLTAMGCLASTVlGSL 1597
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFNsrvNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRI-GSL 79
|
...
gi 568930994 1598 RKV 1600
Cdd:pfam00030 80 RPI 82
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1428-1508 |
1.47e-19 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 84.48 E-value: 1.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1428 VVLFEDMDFQGHRVEVSSALPDVELAQHGPSTQAIHVLSGVWVAYERVGFSGEQFILEKGVYRNCDDWGSGNCALGSLQP 1507
Cdd:smart00247 2 ITLYEDENFQGRSYELSDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIRR 81
|
.
gi 568930994 1508 V 1508
Cdd:smart00247 82 I 82
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1617-1688 |
1.53e-17 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 78.70 E-value: 1.53e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568930994 1617 FEGKEIELTGEVRSLQAEGFNNHVLSVRVKGGVWVVCEHSDFRGRQWLVGSCEITNWLTYSGTQ-RVGSLYPI 1688
Cdd:smart00247 10 FQGRSYELSDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNdQISSIRRI 82
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1521-1598 |
3.51e-15 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 72.16 E-value: 3.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1521 KIQLFSGPNFLGDHISFEDDQASLPASFHP---QSCRVHGGSWVLFEDKNFEADQHIVSEGEFPTLTAMGCLASTVlGSL 1597
Cdd:smart00247 1 KITLYEDENFQGRSYELSDDCPSLQDYGSRdnvSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQI-SSI 79
|
.
gi 568930994 1598 R 1598
Cdd:smart00247 80 R 80
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1238-1319 |
1.55e-11 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 61.76 E-value: 1.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1238 RISLFSEEGLKGKPVTLTGDLKDSQGLERPLQVASATVTAGLWLLYPKPFFEDTPYILEPGEYPTLEAWGTSGPSVGSLK 1317
Cdd:smart00247 1 KITLYEDENFQGRSYELSDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIR 80
|
..
gi 568930994 1318 PM 1319
Cdd:smart00247 81 RI 82
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1151-1229 |
4.50e-10 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 57.52 E-value: 4.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1151 KVILFSEPGCRGRGREVWGDIADASA---WDPVASIRVIRGCWILYEQPEFRGQKLSLPEGDVeLRALACAWSLQGFGSL 1227
Cdd:smart00247 1 KITLYEDENFQGRSYELSDDCPSLQDygsRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEY-PDYQEWGGFNDQISSI 79
|
..
gi 568930994 1228 RR 1229
Cdd:smart00247 80 RR 81
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
663-916 |
3.45e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 3.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 663 SSSPKPQTCAASLTQSPEQPVVPAHLEAQSTPhVLPAvkekftGLSTVPVPPTAKGEVTVPEPPPSPSSPRRKAAPSSQS 742
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAPAPPAVPAGP-ATPG------GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 743 PCAPASPKSKFVPDPENVPSSALTQKEVYPCPSVPAHSHIPKEVLQAHGAPKTSSSRPTTVVQN---AEGGPSIKKEVGQ 819
Cdd:PHA03247 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsvAPGGDVRRRPPSR 2869
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 820 YPQNSPSPCSVP-----CKETVESPTFPAPLPPKQDEVVRDSPgnflsSPTPKGSFQSPPFAPSSSEAKESLSLEGSP-A 893
Cdd:PHA03247 2870 SPAAKPAAPARPpvrrlARPAVSRSTESFALPPDQPERPPQPQ-----APPPPQPQPQPPPPPQPQPPPPPPPRPQPPlA 2944
|
250 260
....*....|....*....|...
gi 568930994 894 SKPMGAEVSTGSQTIPDSTEGKV 916
Cdd:PHA03247 2945 PTTDPAGAGEPSGAVPQPWLGAL 2967
|
|
| Ricin_B_lectin |
pfam00652 |
Ricin-type beta-trefoil lectin domain; |
1693-1820 |
2.65e-05 |
|
Ricin-type beta-trefoil lectin domain;
Pssm-ID: 395527 [Multi-domain] Cd Length: 126 Bit Score: 45.60 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1693 AYFRLWNAALGGFLSVPDHVedmKAGRVVVSEPQAG--GSCIW-YYEDGLLKNqMAPTMSLQVIGPpSPGSKVVLWA-ES 1768
Cdd:pfam00652 1 ATGRIRNRASGKCLDVPGGS---SAGGPVGLYPCHGsnGNQLWtLTGDGTIRS-VASDLCLDVGST-ADGAKVVLWPcHP 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568930994 1769 RLPRQTWSINELGHICSQMFEGQILDVKGGrGYDRDHVVLWEPTKDRLSQIW 1820
Cdd:pfam00652 76 GNGNQRWRYDEDGTQIRNPQSGKCLDVSGA-GTSNGKVILWTCDSGNPNQQW 126
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
561-869 |
3.01e-05 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 48.80 E-value: 3.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 561 ASRIPrltmlTSRGSGPGGTVGTTLGQPLEISTTELKNSISALAPvGVPAVDSPAQnidiPVAHPIRDQGGVSDARTEES 640
Cdd:pfam17823 111 ASRAL-----AAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAAC-RANASAAPRA----AIAAASAPHAASPAPRTAAS 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 641 SrlqgassvlllNQTSQSQVPASSSPKPQTCAASLTQSPEQPVVPAhleAQSTPHvlPAVKekfTGLSTVPVPPTAKGEV 720
Cdd:pfam17823 181 S-----------TTAASSTTAASSAPTTAASSAPATLTPARGISTA---ATATGH--PAAG---TALAAVGNSSPAAGTV 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 721 TVPEPPPSPSSPRRKAA-----PSSQSPCAPASPKSKFVPDPENVPSSALTQKevyPCPSVPAHSHIPKEVLQAHGAPKT 795
Cdd:pfam17823 242 TAAVGTVTPAALATLAAaagtvASAAGTINMGDPHARRLSPAKHMPSDTMARN---PAAPMGAQAQGPIIQVSTDQPVHN 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 796 SSSRPTTVVQNAEGGPSIKKEVG----------QYPQNSPSPCSVPCKETVESP--------TFPAPLPPKQ-------- 849
Cdd:pfam17823 319 TAGEPTPSPSNTTLEPNTPKSVAstnlavvtttKAQAKEPSASPVPVLHTSMIPeveatsptTQPSPLLPTQgaagpgil 398
|
330 340
....*....|....*....|....
gi 568930994 850 ---DEV-VRDSPGNFLSSPTPKGS 869
Cdd:pfam17823 399 lapEQVaTEATAGTASAGPTPRSS 422
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1035-1167 |
4.82e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 45.06 E-value: 4.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1035 PTPAKVTCSPMEMMKKLIAGQGPEPQPSNRPTSRLGgsllfgnlvPANKDAPALEPLGTKLSALPPHGAPGVKKVPGQLP 1114
Cdd:PHA03378 701 PTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARP---------PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAP 771
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568930994 1115 LLCSGRPPPE-KPAPIEPPEGwSPAPKTQGKLNTRPGKVILFSEPGCRGRGREV 1167
Cdd:PHA03378 772 GAPTPQPPPQaPPAPQQRPRG-APTPQPPPQAGPTSMQLMPRAAPGQQGPTKQI 824
|
|
| PRK11901 |
PRK11901 |
hypothetical protein; Reviewed |
571-748 |
7.00e-03 |
|
hypothetical protein; Reviewed
Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 40.82 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 571 TSRGSGPGGTVGTTLGQPLEISTTELKNSISALAPvgvPAVDSPAQNIDIPvahpirdqGGVSDARTEESSRLQGASSVL 650
Cdd:PRK11901 99 NNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAP---PQTPNGQQRIELP--------GNISDALSQQQGQVNAASQNA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 651 LLNQTSQSQVPASSSPKPQTCAASLTQSPEQPVVPAhleAQSTPHVLPAVKekftglSTVPVPPTAKGEVTvpepppsps 730
Cdd:PRK11901 168 QGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKP---ATKKPAVNHHKT------ATVAVPPATSGKPK--------- 229
|
170
....*....|....*...
gi 568930994 731 sPRRKAAPSSQSpcAPAS 748
Cdd:PRK11901 230 -SGAASARALSS--APAS 244
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| beta-trefoil_Ricin_CRYBG2 |
cd23465 |
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin ... |
1690-1825 |
3.32e-86 |
|
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin domain-containing protein 2 (CRYBG2) and similar proteins; CRYBG2, also called absent in melanoma 1-like protein (AIM1L), is a beta/gamma-crystallin family protein with a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.
Pssm-ID: 467343 Cd Length: 136 Bit Score: 277.14 E-value: 3.32e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1690 QRRAYFRLWNAALGGFLSVPDHVEDMKAGRVVVSEPQAGGSCIWYYEDGLLKNQMAPTMSLQVIGPPSPGSKVVLWAESR 1769
Cdd:cd23465 1 QRRVYFRLRNRELGLYLAVPDGVEDMKAGRVVVTEQQEGMSHVWFYEDGLLKNQMAPTMSLQVIGPPDNGAKVVLWSETR 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 568930994 1770 LPRQTWSINELGHICSQMFEGQILDVKGGRGYDRDHVVLWEPTKDRLSQIWTVHVL 1825
Cdd:cd23465 81 QPRQTWSIQPSGHILSQMFEGMILDVKGGRTYDRDHVVLWEVSEERPSQIWDMEVL 136
|
|
| beta-trefoil_Ricin_CRYBG |
cd23430 |
ricin B-type lectin domain, beta-trefoil fold, found in the beta/gamma crystallin ... |
1694-1824 |
1.06e-70 |
|
ricin B-type lectin domain, beta-trefoil fold, found in the beta/gamma crystallin domain-containing protein (CRYBG) family; The CRYBG family includes three members: CRYBG1, CRYBG2, and CRYBG3/vlAKAP. CRYBG1, also called absent in melanoma 1 protein (AIM1), may function as a suppressor of malignant melanoma. It may exert its effects through interactions with the cytoskeleton. CRYBG2 is also called absent in melanoma 1-like protein (AIM1L). CRYBG3/vlAKAP, also called very large A-kinase anchor protein, is an anchoring protein that mediates the subcellular compartmentation of protein kinase A (PKA). It binds to the dimeric RII-alpha regulatory subunit of PKA (PRKAR2A/PRKAR2B). CRYBG proteins belong to the beta/gamma-crystallin family. They all contain a ricin B-type lectin domain with a beta-trefoil fold at the C-terminus. The beta-trefoil fold is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.
Pssm-ID: 467308 [Multi-domain] Cd Length: 133 Bit Score: 232.87 E-value: 1.06e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1694 YFRLWNAALGGFLSVPDHVEDMKAGRVVVSEPQAGGSCIWYYEDGLLKNQMAPTMSLQVIGPPS-PGSKVVLWAESRLPR 1772
Cdd:cd23430 2 YFRLRNKATGLFLSVNGNLEDLKLLRVQVMPDVGADDQIWYYQEGLIKCRIAEDCCLTVIGSLVtPGSKVGLWLEQNADR 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568930994 1773 QTWSINELGHICSQMFEGQILDVKGGRGYDRDHVVLWEPTKDRLSQIWTVHV 1824
Cdd:cd23430 82 QFWSLKSDGRIYSKLKPNLVLDVKGGTQYDQNHVILNTPSEEKFTQVWEIMV 133
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1333-1419 |
2.61e-33 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
Pssm-ID: 459639 Cd Length: 82 Bit Score: 123.76 E-value: 2.61e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1333 KAVVYEAPGFQGQSWEVSRDIYNLQQPEDSqspqlTSVGSLRILGGCWVGYEKEGFRGHQYLLEEGEYADWSNWGGYDEL 1412
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFN-----SRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDR 75
|
....*..
gi 568930994 1413 LTSLRVI 1419
Cdd:pfam00030 76 IGSLRPI 82
|
|
| beta-trefoil_Ricin_vlAKAP |
cd23463 |
ricin B-type lectin domain, beta-trefoil fold, found in very large A-kinase anchor protein ... |
1690-1825 |
6.72e-32 |
|
ricin B-type lectin domain, beta-trefoil fold, found in very large A-kinase anchor protein (vlAKAP) and similar proteins; vlAKAP, also called beta/gamma crystallin domain-containing protein 3 (CRYBG3), is an anchoring protein that mediates the subcellular compartmentation of protein kinase A (PKA). It binds to the dimeric RII-alpha regulatory subunit of PKA (PRKAR2A/PRKAR2B). vlAKAP belongs to the beta/gamma-crystallin family. It contains a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.
Pssm-ID: 467341 Cd Length: 136 Bit Score: 121.78 E-value: 6.72e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1690 QRRAYFRLWNAALGGFLSVPDHVEDMKAGRVVVSepQAGGSC--IWYYEDGLLKNQMAPTmSLQVIG-PPSPGSKVVLWA 1766
Cdd:cd23463 1 QPRVYLRIKNRAQGLYLTTEGNLADPRATSVCVS--QYNGKDtqIWYYCRGLLKSKANDA-CLDVIGgKDNPGSKVALWT 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568930994 1767 ESRLPRQTWSINELGHICSQMFEGQILDVKGGRGYDRDHVVLWEPTKDRLSQIWTVHVL 1825
Cdd:cd23463 78 EHGKTHQKWRINEDGTISSHLSDDLVLDLKGGNYYDKDHLIVNNPEEDQQTQKWDIELL 136
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1428-1508 |
1.89e-31 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
Pssm-ID: 459639 Cd Length: 82 Bit Score: 118.37 E-value: 1.89e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1428 VVLFEDMDFQGHRVEVSSALPDVELAQHGPSTQAIHVLSGVWVAYERVGFSGEQFILEKGVYRNCDDWGSGNCALGSLQP 1507
Cdd:pfam00030 2 IVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLRP 81
|
.
gi 568930994 1508 V 1508
Cdd:pfam00030 82 I 82
|
|
| beta-trefoil_Ricin_CRYBG1 |
cd23464 |
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin ... |
1690-1825 |
1.49e-26 |
|
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin domain-containing protein 1 (CRYBG1) and similar proteins; CRYBG1, also called absent in melanoma 1 protein (AIM1), may function as a suppressor of malignant melanoma. It may exert its effects through interactions with the cytoskeleton. CRYBG1 belongs to the beta/gamma-crystallin family. It contains a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.
Pssm-ID: 467342 Cd Length: 137 Bit Score: 106.81 E-value: 1.49e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1690 QRRAYFRLWNAALGGFLSVPDHVEDMKAGRVVVSEPQAGGSCIWYYEDGLLKNQMAPTMSLQVIGP-PSPGSKVVLWAES 1768
Cdd:cd23464 1 QKRVYFRLRNKETGCFMSTNGNLDDLKLLRIQVLEDTGSDDQIWVYQDGLIRCRMAEDCCLETVGNlVTAGSKLGLSLEQ 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 568930994 1769 RLPRQTWSINELGHICSQMFEGQILDVKGGRGYDRDHVVLWEPTKDRLSQIWTVHVL 1825
Cdd:cd23464 81 GKDNQFWSITSDGRIYSKLKPDLVLDIKGGQQYDQNHVILNTFDEEKLTQRWEVEIL 137
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1333-1419 |
1.28e-25 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 101.82 E-value: 1.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1333 KAVVYEAPGFQGQSWEVSRDIYNLQqPEDSQSpqltSVGSLRILGGCWVGYEKEGFRGHQYLLEEGEYADWSNWGGYDEL 1412
Cdd:smart00247 1 KITLYEDENFQGRSYELSDDCPSLQ-DYGSRD----NVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQ 75
|
....*..
gi 568930994 1413 LTSLRVI 1419
Cdd:smart00247 76 ISSIRRI 82
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1608-1688 |
4.11e-25 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
Pssm-ID: 459639 Cd Length: 82 Bit Score: 100.26 E-value: 4.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1608 SLSLFGLECFEGKEIELTGEVRSLQAEGFNNHVLSVRVKGGVWVVCEHSDFRGRQWLVGSCEITNWLTYSG-TQRVGSLY 1686
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGApNDRIGSLR 80
|
..
gi 568930994 1687 PI 1688
Cdd:pfam00030 81 PI 82
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1238-1319 |
1.00e-22 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
Pssm-ID: 459639 Cd Length: 82 Bit Score: 93.71 E-value: 1.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1238 RISLFSEEGLKGKPVTLTGDLKDSQGLERPLQVASATVTAGLWLLYPKPFFEDTPYILEPGEYPTLEAWGTSGPSVGSLK 1317
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLR 80
|
..
gi 568930994 1318 PM 1319
Cdd:pfam00030 81 PI 82
|
|
| Crystall |
pfam00030 |
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1521-1600 |
3.28e-20 |
|
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.
Pssm-ID: 459639 Cd Length: 82 Bit Score: 86.39 E-value: 3.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1521 KIQLFSGPNFLGDHISFEDDQASLPASFHP---QSCRVHGGSWVLFEDKNFEADQHIVSEGEFPTLTAMGCLASTVlGSL 1597
Cdd:pfam00030 1 KIVLYEKENFQGRSIELTDDCPSLQERGFNsrvNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRI-GSL 79
|
...
gi 568930994 1598 RKV 1600
Cdd:pfam00030 80 RPI 82
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1428-1508 |
1.47e-19 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 84.48 E-value: 1.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1428 VVLFEDMDFQGHRVEVSSALPDVELAQHGPSTQAIHVLSGVWVAYERVGFSGEQFILEKGVYRNCDDWGSGNCALGSLQP 1507
Cdd:smart00247 2 ITLYEDENFQGRSYELSDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIRR 81
|
.
gi 568930994 1508 V 1508
Cdd:smart00247 82 I 82
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1617-1688 |
1.53e-17 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 78.70 E-value: 1.53e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568930994 1617 FEGKEIELTGEVRSLQAEGFNNHVLSVRVKGGVWVVCEHSDFRGRQWLVGSCEITNWLTYSGTQ-RVGSLYPI 1688
Cdd:smart00247 10 FQGRSYELSDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNdQISSIRRI 82
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1521-1598 |
3.51e-15 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 72.16 E-value: 3.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1521 KIQLFSGPNFLGDHISFEDDQASLPASFHP---QSCRVHGGSWVLFEDKNFEADQHIVSEGEFPTLTAMGCLASTVlGSL 1597
Cdd:smart00247 1 KITLYEDENFQGRSYELSDDCPSLQDYGSRdnvSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQI-SSI 79
|
.
gi 568930994 1598 R 1598
Cdd:smart00247 80 R 80
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1238-1319 |
1.55e-11 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 61.76 E-value: 1.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1238 RISLFSEEGLKGKPVTLTGDLKDSQGLERPLQVASATVTAGLWLLYPKPFFEDTPYILEPGEYPTLEAWGTSGPSVGSLK 1317
Cdd:smart00247 1 KITLYEDENFQGRSYELSDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIR 80
|
..
gi 568930994 1318 PM 1319
Cdd:smart00247 81 RI 82
|
|
| XTALbg |
smart00247 |
Beta/gamma crystallins; Beta/gamma crystallins |
1151-1229 |
4.50e-10 |
|
Beta/gamma crystallins; Beta/gamma crystallins
Pssm-ID: 214583 Cd Length: 82 Bit Score: 57.52 E-value: 4.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1151 KVILFSEPGCRGRGREVWGDIADASA---WDPVASIRVIRGCWILYEQPEFRGQKLSLPEGDVeLRALACAWSLQGFGSL 1227
Cdd:smart00247 1 KITLYEDENFQGRSYELSDDCPSLQDygsRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEY-PDYQEWGGFNDQISSI 79
|
..
gi 568930994 1228 RR 1229
Cdd:smart00247 80 RR 81
|
|
| beta-trefoil_Ricin_SCDase |
cd23456 |
ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ceramide ... |
1694-1810 |
8.43e-10 |
|
ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ceramide N-deacylase (SCDase) and similar proteins; SCDase (EC 3.5.1.69) is an enzyme which hydrolyzes the N-acyl linkage between fatty acid and sphingosine in ceramide of various glycosphingolipids and sphingomyelin. Shewanella algae SCDase contains two ricin B-type lectin domains at its C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.
Pssm-ID: 467334 [Multi-domain] Cd Length: 122 Bit Score: 58.14 E-value: 8.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1694 YFRLWNAALGGFLSVPDHVedMKAGRVVVSEPQAGGSCIWYYE-DGLLKNQMAPTMSLQVIGPPSPGSKVVLWAESRLPR 1772
Cdd:cd23456 2 YFQLKSQASGLCLDVSGGA--TNGANVVVYDCNNSNSQKWYYDaTGRLHSKANPGKCLDAGGENSNGANVVLWACNDSAN 79
|
90 100 110
....*....|....*....|....*....|....*...
gi 568930994 1773 QTWSINElGHICSQMFEGQILDVKGGRGydrDHVVLWE 1810
Cdd:cd23456 80 QRWDFDG-NFIRSRNNTNLALDAYGSQG---SNVGLWQ 113
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
663-916 |
3.45e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 3.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 663 SSSPKPQTCAASLTQSPEQPVVPAHLEAQSTPhVLPAvkekftGLSTVPVPPTAKGEVTVPEPPPSPSSPRRKAAPSSQS 742
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAPAPPAVPAGP-ATPG------GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 743 PCAPASPKSKFVPDPENVPSSALTQKEVYPCPSVPAHSHIPKEVLQAHGAPKTSSSRPTTVVQN---AEGGPSIKKEVGQ 819
Cdd:PHA03247 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsvAPGGDVRRRPPSR 2869
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 820 YPQNSPSPCSVP-----CKETVESPTFPAPLPPKQDEVVRDSPgnflsSPTPKGSFQSPPFAPSSSEAKESLSLEGSP-A 893
Cdd:PHA03247 2870 SPAAKPAAPARPpvrrlARPAVSRSTESFALPPDQPERPPQPQ-----APPPPQPQPQPPPPPQPQPPPPPPPRPQPPlA 2944
|
250 260
....*....|....*....|...
gi 568930994 894 SKPMGAEVSTGSQTIPDSTEGKV 916
Cdd:PHA03247 2945 PTTDPAGAGEPSGAVPQPWLGAL 2967
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
410-914 |
3.69e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 3.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 410 PPPKEKRPTVRVQEAADWGDGGPQAPRTELPGMGSMARTELLVPLPGPREPSPHPHVGVASGGSRNREEWRVTRTVRTTT 489
Cdd:PHA03247 2573 PAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 490 TTTVVGGHVDRRVSSSVSVGPSMSGETLPRgrnvtrtvravvvsPRAEGSPSRSQALEVLSNLMPAERiPPASRIPRLTM 569
Cdd:PHA03247 2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQR--------------PRRRAARPTVGSLTSLADPPPPPP-TPEPAPHALVS 2717
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 570 LTSRGSGPGGTVGTTLGQPLEISTTELKNsiSALAPVGVPAVDSPAQNIDIPVAHPIRDQGGVSDARTEESSRLQGASSV 649
Cdd:PHA03247 2718 ATPLPPGPAAARQASPALPAAPAPPAVPA--GPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 650 LLLNQTSQSQVPASSSPKPqTCAASLTQSPEQPVVPAHLEAQSTPHVLPAvkekftglstvPVPPTAKGEVTVPEPPPSp 729
Cdd:PHA03247 2796 ESLPSPWDPADPPAAVLAP-AAALPPAASPAGPLPPPTSAQPTAPPPPPG-----------PPPPSLPLGGSVAPGGDV- 2862
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 730 ssprRKAAPSSQSPCAPASPKskfvpdpeNVPSSALTQKEVYPCPSVPAHSHIPKEVLQAHGAPKTSSSRPTTVVQNAEG 809
Cdd:PHA03247 2863 ----RRRPPSRSPAAKPAAPA--------RPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 810 GPsikKEVGQYPQNSPSPCSVPCKETVESPTFPAP----LPPKQDEVVRD-SPGNFLSSPTPKGSFQSPPFAPSS--SEA 882
Cdd:PHA03247 2931 PP---PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPwlgaLVPGRVAVPRFrVPQPAPSREAPASSTPPLTGHSLSrvSSW 3007
|
490 500 510
....*....|....*....|....*....|....
gi 568930994 883 KESLSLEGSPASKPMGAEvstgsQT--IPDSTEG 914
Cdd:PHA03247 3008 ASSLALHEETDPPPVSLK-----QTlwPPDDTED 3036
|
|
| beta-trefoil_Ricin-like |
cd00161 |
ricin B-type lectin domain, beta-trefoil fold; The ricin B-type lectin domain is a ... |
1693-1820 |
1.47e-05 |
|
ricin B-type lectin domain, beta-trefoil fold; The ricin B-type lectin domain is a carbohydrate-binding domain formed from presumed gene triplication. It shows a beta-trefoil fold characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain was originally found in Ricin, which is a legume lectin from the seeds of the castor bean plant, Ricinus communis. It is also found in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases, or proteases, which serve diverse functions such as inhibitory toxicity, enzymatic activity, and signal transduction. The ricin B-type lectin domain can be present in one or more copies and has been shown in some instances to bind simple sugars, such as galactose or lactose. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B-type lectin domain has also been referred as the (QxW)3 domain and the three homologous regions as the QxW repeats. A disulfide bond is also conserved in some QxW repeats.
Pssm-ID: 467293 [Multi-domain] Cd Length: 134 Bit Score: 46.59 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1693 AYFRLWNAALGGFLSVPDHveDMKAGRVVVSEPQAGGSC-IWYYED-----GLLKNqMAPTMSLQVIG-PPSPGSKVVLW 1765
Cdd:cd00161 1 GTYRIVNAASGKCLDVAGG--STANGAPVQQWTCNGGANqQWTLTPvgdgyYTIRN-VASGKCLDVAGgSTANGANVQQW 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568930994 1766 AESRLPRQTWSINELG----HICSQMfEGQILDVKGGRGYDRDHVVLWEPTkDRLSQIW 1820
Cdd:cd00161 78 TCNGGDNQQWRLEPVGdgyyRIVNKH-SGKCLDVSGGSTANGANVQQWTCN-GGANQQW 134
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
655-1140 |
1.71e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 50.32 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 655 TSQSQVPASSSPKPQTCAAslTQSPEQPVVPAHleaQSTPHVLPAVKEKFTG-LSTVPVPPTAkgevTVPEPPPSPSSPR 733
Cdd:PHA03247 2564 PDRSVPPPRPAPRPSEPAV--TSRARRPDAPPQ---SARPRAPVDDRGDPRGpAPPSPLPPDT----HAPDPPPPSPSPA 2634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 734 RKAAPSSQSPCAPASPKSKFVPDPENV-PSSALTQKEVYPCPSVPAHSHIPKEVLQAHGA----------PKTSSSRPTT 802
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDPAPGRVsRPRRARRLGRAAQASSPPQRPRRRAARPTVGSltsladppppPPTPEPAPHA 2714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 803 VVQNAEGGPSIKKEVGQYPQNSPSPCSVPCKETVESPTFPAPLPPKQDEVVRDSPGNFLSSPTPKGSFQSPPFAPSSSEA 882
Cdd:PHA03247 2715 LVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 883 KESLSLEGSPASKPMGAEVSTGSQTIPDSTEGKVPSEPSEEEDEAALT-ADLEIFLDTLRSMEPPEILRThrlpRAPRSS 961
Cdd:PHA03247 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPpGPPPPSLPLGGSVAPGGDVRR----RPPSRS 2870
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 962 YLAMYATLPAIEEDQLGPCVPGPGPQERPvleeeeeeveeeeeelenpyLSDDEKLRRRQEKAGPRPSLGLHPPTPAKVT 1041
Cdd:PHA03247 2871 PAAKPAAPARPPVRRLARPAVSRSTESFA--------------------LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1042 cspmemmkkliagqgPEPQPSNRPTSRLGgsllfgnlvPANKDAPALEPLGTKLSALPPHGAPGVKKVPGQlpLLCSGRP 1121
Cdd:PHA03247 2931 ---------------PPPPPPPRPQPPLA---------PTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRF--RVPQPAP 2984
|
490
....*....|....*....
gi 568930994 1122 PPEKPAPIEPPEGWSPAPK 1140
Cdd:PHA03247 2985 SREAPASSTPPLTGHSLSR 3003
|
|
| Ricin_B_lectin |
pfam00652 |
Ricin-type beta-trefoil lectin domain; |
1693-1820 |
2.65e-05 |
|
Ricin-type beta-trefoil lectin domain;
Pssm-ID: 395527 [Multi-domain] Cd Length: 126 Bit Score: 45.60 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1693 AYFRLWNAALGGFLSVPDHVedmKAGRVVVSEPQAG--GSCIW-YYEDGLLKNqMAPTMSLQVIGPpSPGSKVVLWA-ES 1768
Cdd:pfam00652 1 ATGRIRNRASGKCLDVPGGS---SAGGPVGLYPCHGsnGNQLWtLTGDGTIRS-VASDLCLDVGST-ADGAKVVLWPcHP 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568930994 1769 RLPRQTWSINELGHICSQMFEGQILDVKGGrGYDRDHVVLWEPTKDRLSQIW 1820
Cdd:pfam00652 76 GNGNQRWRYDEDGTQIRNPQSGKCLDVSGA-GTSNGKVILWTCDSGNPNQQW 126
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
561-869 |
3.01e-05 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 48.80 E-value: 3.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 561 ASRIPrltmlTSRGSGPGGTVGTTLGQPLEISTTELKNSISALAPvGVPAVDSPAQnidiPVAHPIRDQGGVSDARTEES 640
Cdd:pfam17823 111 ASRAL-----AAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAAC-RANASAAPRA----AIAAASAPHAASPAPRTAAS 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 641 SrlqgassvlllNQTSQSQVPASSSPKPQTCAASLTQSPEQPVVPAhleAQSTPHvlPAVKekfTGLSTVPVPPTAKGEV 720
Cdd:pfam17823 181 S-----------TTAASSTTAASSAPTTAASSAPATLTPARGISTA---ATATGH--PAAG---TALAAVGNSSPAAGTV 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 721 TVPEPPPSPSSPRRKAA-----PSSQSPCAPASPKSKFVPDPENVPSSALTQKevyPCPSVPAHSHIPKEVLQAHGAPKT 795
Cdd:pfam17823 242 TAAVGTVTPAALATLAAaagtvASAAGTINMGDPHARRLSPAKHMPSDTMARN---PAAPMGAQAQGPIIQVSTDQPVHN 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 796 SSSRPTTVVQNAEGGPSIKKEVG----------QYPQNSPSPCSVPCKETVESP--------TFPAPLPPKQ-------- 849
Cdd:pfam17823 319 TAGEPTPSPSNTTLEPNTPKSVAstnlavvtttKAQAKEPSASPVPVLHTSMIPeveatsptTQPSPLLPTQgaagpgil 398
|
330 340
....*....|....*....|....
gi 568930994 850 ---DEV-VRDSPGNFLSSPTPKGS 869
Cdd:pfam17823 399 lapEQVaTEATAGTASAGPTPRSS 422
|
|
| beta-trefoil_Ricin_SCDase_rpt1 |
cd23499 |
first ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ... |
1694-1810 |
9.41e-05 |
|
first ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ceramide N-deacylase (SCDase) and similar proteins; SCDase (EC 3.5.1.69) is an enzyme which hydrolyzes the N-acyl linkage between fatty acid and sphingosine in ceramide of various glycosphingolipids and sphingomyelin. Shewanella algae SCDase contains two ricin B-type lectin domains at its C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. The model corresponds to the first lectin domain.
Pssm-ID: 467377 [Multi-domain] Cd Length: 131 Bit Score: 43.98 E-value: 9.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1694 YFRLWNAALGGFLSVPDHVEDMKAGRVVVSEPQAGGSCI--WYY--EDGLLKNQMAPTMSLQVIGPPSPGSKVVLWAESR 1769
Cdd:cd23499 2 FVRIVNRASGKCLDIPGNDNDVVNGANVILWDCADKSADqrWIYdaASGMLRNKANPSYCLDNRGQAYNGGEVVLWQCED 81
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 568930994 1770 LPRQTWSINElGHICSQMFEGQILDVkGGRGYDrDHVVLWE 1810
Cdd:cd23499 82 SDNLRWTYDN-GVLRSKHNPNIVLDA-YGRDNN-SQVGQWE 119
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
733-1144 |
2.30e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.47 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 733 RRKAAPSSQSPCAPASPKSKFvpdPENVPSSALTQKEVYPCPSVPAHSHIPKEVLQAHGAPKTSSSRPttvvQNAEGGPS 812
Cdd:PHA03247 2588 RPDAPPQSARPRAPVDDRGDP---RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP----RDDPAPGR 2660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 813 IKKEVGQYPQNSPSPCSVPcketVESPTFPAPLPPKqdevvrdSPGNFLSSPTPkgsfQSPPFAPSSSEAKESLSLEGSP 892
Cdd:PHA03247 2661 VSRPRRARRLGRAAQASSP----PQRPRRRAARPTV-------GSLTSLADPPP----PPPTPEPAPHALVSATPLPPGP 2725
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 893 ASKPMGAEVSTGSQTIPDSTEGKVPSEPSEEEDEAALTAdleifldTLRSMEPPEILRTHRLPRAPRSSYLAMYATLPAI 972
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTA-------GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 973 EedqlGPCVPGPGPQERPVLEEEEEEVEEEEEELENPYLSddeklrrrQEKAGPRPSLGLHPPTPAKVTCSPMEMMKKLI 1052
Cdd:PHA03247 2799 P----SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA--------QPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRP 2866
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1053 AGQGPEPQPSNRPTSRLggsllfgNLVPANKDAPALEPLgtklsALPPHGAPGVKKVPGQlpllcsgrPPPEKPAPIEPP 1132
Cdd:PHA03247 2867 PSRSPAAKPAAPARPPV-------RRLARPAVSRSTESF-----ALPPDQPERPPQPQAP--------PPPQPQPQPPPP 2926
|
410
....*....|..
gi 568930994 1133 EGWSPAPKTQGK 1144
Cdd:PHA03247 2927 PQPQPPPPPPPR 2938
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1035-1167 |
4.82e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 45.06 E-value: 4.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1035 PTPAKVTCSPMEMMKKLIAGQGPEPQPSNRPTSRLGgsllfgnlvPANKDAPALEPLGTKLSALPPHGAPGVKKVPGQLP 1114
Cdd:PHA03378 701 PTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARP---------PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAP 771
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568930994 1115 LLCSGRPPPE-KPAPIEPPEGwSPAPKTQGKLNTRPGKVILFSEPGCRGRGREV 1167
Cdd:PHA03378 772 GAPTPQPPPQaPPAPQQRPRG-APTPQPPPQAGPTSMQLMPRAAPGQQGPTKQI 824
|
|
| beta-trefoil_Ricin_GllA-1 |
cd23454 |
GllA-1 domain, beta-trefoil fold, found in Mucor circinelloides Gellins and similar proteins; ... |
1730-1822 |
2.25e-03 |
|
GllA-1 domain, beta-trefoil fold, found in Mucor circinelloides Gellins and similar proteins; Gellin proteins act as central effectors of wound-induced protoplasmic gelation. They possess ten related N-terminal beta-trefoil domains (Gll-1 to Gll-10) that contribute to distinct gelation-related activities. The beta-trefoil domains show low sequence similarity to members of the functionally diverse ricin B lectin domain family. They are characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site. Gellin from M. circinelloides has been called GellinA (also known as GllA). The model corresponds to GllA-1 domain, which is a remote family member of the ricin B-type lectin domain.
Pssm-ID: 467332 [Multi-domain] Cd Length: 136 Bit Score: 39.99 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 1730 SCIWYYEDGLLKNQMaptmSLQVI----GPPSPGSKVVLWAESRLPR---QTWSINELGHICSQMFEGQILDVKGGRGYD 1802
Cdd:cd23454 39 SQLWRYDDGYLVNKA----SGLVLdiqgGVVKSGTRLVQSPKKPSKDannQRWGLTADGYIYLLSNPSLVLGIKGNETRE 114
|
90 100
....*....|....*....|..
gi 568930994 1803 RDHVVLWE--PTKDRLSQIWTV 1822
Cdd:cd23454 115 GARVILQErkLQKDALNQRWTF 136
|
|
| PRK11901 |
PRK11901 |
hypothetical protein; Reviewed |
571-748 |
7.00e-03 |
|
hypothetical protein; Reviewed
Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 40.82 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 571 TSRGSGPGGTVGTTLGQPLEISTTELKNSISALAPvgvPAVDSPAQNIDIPvahpirdqGGVSDARTEESSRLQGASSVL 650
Cdd:PRK11901 99 NNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAP---PQTPNGQQRIELP--------GNISDALSQQQGQVNAASQNA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930994 651 LLNQTSQSQVPASSSPKPQTCAASLTQSPEQPVVPAhleAQSTPHVLPAVKekftglSTVPVPPTAKGEVTvpepppsps 730
Cdd:PRK11901 168 QGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKP---ATKKPAVNHHKT------ATVAVPPATSGKPK--------- 229
|
170
....*....|....*...
gi 568930994 731 sPRRKAAPSSQSpcAPAS 748
Cdd:PRK11901 230 -SGAASARALSS--APAS 244
|
|
| |
