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coiled-coil domain-containing protein 40 isoform X1 [Mus musculus]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
BRE1
pfam08647 BRE1 E3 ubiquitin ligase; BRE1 is an E3 ubiquitin ligase that has been shown to act as a ...
901-999
9.03e-19
BRE1 E3 ubiquitin ligase; BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions.
Pssm-ID: 462547 [Multi-domain]
Cd Length: 95
Bit Score: 82.25
E-value: 9.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 901 LQ Q ELV QVTHER EE QLVSV D QLK K EVH I M E Q KKLR I E SKI A HEKKEQKIVS R HMRD L D N DLS KLN M LL D K NRCSS E E L EQ 980
Cdd:pfam08647 1 LQ T ELV KLEQAF EE LSEQL D KKV K DLT I L E E KKLR L E AEK A KADQKYFAAM R SKDA L E N ENK KLN T LL S K SSELI E Q L KE 80
90
....*....|....*....
gi 568972640 981 nnia TE T EF L R T LK DS E R E 999
Cdd:pfam08647 81 ---- TE K EF V R K LK NL E K E 95
SMC_prok_B super family
cl37069 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
467-1204
9.50e-09
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
TIGR02168 :Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 60.07
E-value: 9.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 467 E KSHDRHS L VACERRRKE EEL QCARSVYNKTCQTAN E ERKK L AA L QTEV E S L A L HLFYMQNIEQDVRDDIQVMKQVVRKT 546
Cdd:TIGR02168 221 E LRELELA L LVLRLEELR EEL EELQEELKEAEEELE E LTAE L QE L EEKL E E L R L EVSELEEEIEELQKELYALANEISRL 300
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 547 E TE K MHAEVEKK kqdlfvd Q L TERSHQ LE ENIALF E AQYLSQ AE DTRV L KKAVT E AIT E IDTIAV E KKRILQQWTTSLVG 626
Cdd:TIGR02168 301 E QQ K QILRERLA ------- N L ERQLEE LE AQLEEL E SKLDEL AE ELAE L EEKLE E LKE E LESLEA E LEELEAELEELESR 373
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 627 MKHRN E AYK T VMDALRECQH Q VK S TDS EIE VCKKSIMQE E EKN E K L ARLLNRAETEATLVQKMTA Q cl SKQ E A L QT E FNT 706
Cdd:TIGR02168 374 LEELE E QLE T LRSKVAQLEL Q IA S LNN EIE RLEARLERL E DRR E R L QQEIEELLKKLEEAELKEL Q -- AEL E E L EE E LEE 451
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 707 Y Q LA L QDT EE M L NKGYV E HSAVLSE L Q A TRQ afh QEQE L RQKM D MSMVDKLQEQ G T S ---------- S KMTKYFHQ L LRK 776
Cdd:TIGR02168 452 L Q EE L ERL EE A L EELRE E LEEAEQA L D A AER --- ELAQ L QARL D SLERLQENLE G F S egvkallknq S GLSGILGV L SEL 528
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 777 LQKEN ------- TN L VTH L SKIDGDIAQ A TLDITNTNCKIDMHKK T LAEM D KEVKRF ndl I TNSES EI ARRTILIERKQS 849
Cdd:TIGR02168 529 ISVDE gyeaaie AA L GGR L QAVVVENLN A AKKAIAFLKQNELGRV T FLPL D SIKGTE --- I QGNDR EI LKNIEGFLGVAK 605
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 850 LINF F NKQ L EQMV S E L G G eeagpleleikr LSKLTEEYNTGVA ----- EAQMTWLR L QQE LV Q ---- V T HEREEQLV S VD 920
Cdd:TIGR02168 606 DLVK F DPK L RKAL S Y L L G ------------ GVLVVDDLDNALE lakkl RPGYRIVT L DGD LV R pggv I T GGSAKTNS S IL 673
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 921 QLKK E VHIM E Q K KLRI E S KIA HEK K EQKIVSRHMRD L DND L SK L NML L DKNRCSSEE L EQNNIAT E T E FLRTLKDSERET 1000
Cdd:TIGR02168 674 ERRR E IEEL E E K IEEL E E KIA ELE K ALAELRKELEE L EEE L EQ L RKE L EELSRQISA L RKDLARL E A E VEQLEERIAQLS 753
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1001 IQMQ E KLM E LS E EKAT L LNSFM E AEHQIMLW E KKIQLAKEMRSSVDSET gq TEIRAMK AE IHRMKVRHGQ L LKQQ E KMI R 1080
Cdd:TIGR02168 754 KELT E LEA E IE E LEER L EEAEE E LAEAEAEI E ELEAQIEQLKEELKALR -- EALDELR AE LTLLNEEAAN L RERL E SLE R 831
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1081 DMELAVA R R E TIVV Q A E GQ S KIDKKVIT ktefhy QQR EL QKKVR E MHKATDDCT N TISE LEE TQKF L S S S L Q E KQQL L S E 1160
Cdd:TIGR02168 832 RIAATER R L E DLEE Q I E EL S EDIESLAA ------ EIE EL EELIE E LESELEALL N ERAS LEE ALAL L R S E L E E LSEE L R E 905
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 568972640 1161 MQATTDV L EE E INQ L TALKR Q NL L EIVT L QT R GKH LQ AAIEGK Y 1204
Cdd:TIGR02168 906 LESKRSE L RR E LEE L REKLA Q LE L RLEG L EV R IDN LQ ERLSEE Y 949
PHA03169 super family
cl27451 hypothetical protein; Provisional
5-147
2.67e-04
hypothetical protein; Provisional
PHA03169 :Pssm-ID: 223003 [Multi-domain]
Cd Length: 413
Bit Score: 44.96
E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 5 E DQ A D G R S QQEGQQ SS A E EDSEQQYTEG P EVS P QLEDNGQEIDEGRD P TRS P EEDITTEGGGG segemm DA E KVSTDG E A 84
Cdd:PHA03169 112 E EL A S G L S PENTSG SS P E SPASHSPPPS P PSH P GPHEPAPPESHNPS P NQQ P SSFLQPSHEDS ------ PE E PEPPTS E P 185
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568972640 85 ISEGEVGSNG ETP PETEV efi GETA PD TDV E FIGE T SPGTDVEP T GESIQETE v E SIGEATP G 147
Cdd:PHA03169 186 EPDSPGPPQS ETP TSSPP --- PQSP PD EPG E PQSP T PQQAPSPN T QQAVEHED - E PTEPERE G 244
Name
Accession
Description
Interval
E-value
BRE1
pfam08647 BRE1 E3 ubiquitin ligase; BRE1 is an E3 ubiquitin ligase that has been shown to act as a ...
901-999
9.03e-19
BRE1 E3 ubiquitin ligase; BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions.
Pssm-ID: 462547 [Multi-domain]
Cd Length: 95
Bit Score: 82.25
E-value: 9.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 901 LQ Q ELV QVTHER EE QLVSV D QLK K EVH I M E Q KKLR I E SKI A HEKKEQKIVS R HMRD L D N DLS KLN M LL D K NRCSS E E L EQ 980
Cdd:pfam08647 1 LQ T ELV KLEQAF EE LSEQL D KKV K DLT I L E E KKLR L E AEK A KADQKYFAAM R SKDA L E N ENK KLN T LL S K SSELI E Q L KE 80
90
....*....|....*....
gi 568972640 981 nnia TE T EF L R T LK DS E R E 999
Cdd:pfam08647 81 ---- TE K EF V R K LK NL E K E 95
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
467-1204
9.50e-09
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 60.07
E-value: 9.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 467 E KSHDRHS L VACERRRKE EEL QCARSVYNKTCQTAN E ERKK L AA L QTEV E S L A L HLFYMQNIEQDVRDDIQVMKQVVRKT 546
Cdd:TIGR02168 221 E LRELELA L LVLRLEELR EEL EELQEELKEAEEELE E LTAE L QE L EEKL E E L R L EVSELEEEIEELQKELYALANEISRL 300
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 547 E TE K MHAEVEKK kqdlfvd Q L TERSHQ LE ENIALF E AQYLSQ AE DTRV L KKAVT E AIT E IDTIAV E KKRILQQWTTSLVG 626
Cdd:TIGR02168 301 E QQ K QILRERLA ------- N L ERQLEE LE AQLEEL E SKLDEL AE ELAE L EEKLE E LKE E LESLEA E LEELEAELEELESR 373
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 627 MKHRN E AYK T VMDALRECQH Q VK S TDS EIE VCKKSIMQE E EKN E K L ARLLNRAETEATLVQKMTA Q cl SKQ E A L QT E FNT 706
Cdd:TIGR02168 374 LEELE E QLE T LRSKVAQLEL Q IA S LNN EIE RLEARLERL E DRR E R L QQEIEELLKKLEEAELKEL Q -- AEL E E L EE E LEE 451
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 707 Y Q LA L QDT EE M L NKGYV E HSAVLSE L Q A TRQ afh QEQE L RQKM D MSMVDKLQEQ G T S ---------- S KMTKYFHQ L LRK 776
Cdd:TIGR02168 452 L Q EE L ERL EE A L EELRE E LEEAEQA L D A AER --- ELAQ L QARL D SLERLQENLE G F S egvkallknq S GLSGILGV L SEL 528
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 777 LQKEN ------- TN L VTH L SKIDGDIAQ A TLDITNTNCKIDMHKK T LAEM D KEVKRF ndl I TNSES EI ARRTILIERKQS 849
Cdd:TIGR02168 529 ISVDE gyeaaie AA L GGR L QAVVVENLN A AKKAIAFLKQNELGRV T FLPL D SIKGTE --- I QGNDR EI LKNIEGFLGVAK 605
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 850 LINF F NKQ L EQMV S E L G G eeagpleleikr LSKLTEEYNTGVA ----- EAQMTWLR L QQE LV Q ---- V T HEREEQLV S VD 920
Cdd:TIGR02168 606 DLVK F DPK L RKAL S Y L L G ------------ GVLVVDDLDNALE lakkl RPGYRIVT L DGD LV R pggv I T GGSAKTNS S IL 673
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 921 QLKK E VHIM E Q K KLRI E S KIA HEK K EQKIVSRHMRD L DND L SK L NML L DKNRCSSEE L EQNNIAT E T E FLRTLKDSERET 1000
Cdd:TIGR02168 674 ERRR E IEEL E E K IEEL E E KIA ELE K ALAELRKELEE L EEE L EQ L RKE L EELSRQISA L RKDLARL E A E VEQLEERIAQLS 753
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1001 IQMQ E KLM E LS E EKAT L LNSFM E AEHQIMLW E KKIQLAKEMRSSVDSET gq TEIRAMK AE IHRMKVRHGQ L LKQQ E KMI R 1080
Cdd:TIGR02168 754 KELT E LEA E IE E LEER L EEAEE E LAEAEAEI E ELEAQIEQLKEELKALR -- EALDELR AE LTLLNEEAAN L RERL E SLE R 831
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1081 DMELAVA R R E TIVV Q A E GQ S KIDKKVIT ktefhy QQR EL QKKVR E MHKATDDCT N TISE LEE TQKF L S S S L Q E KQQL L S E 1160
Cdd:TIGR02168 832 RIAATER R L E DLEE Q I E EL S EDIESLAA ------ EIE EL EELIE E LESELEALL N ERAS LEE ALAL L R S E L E E LSEE L R E 905
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 568972640 1161 MQATTDV L EE E INQ L TALKR Q NL L EIVT L QT R GKH LQ AAIEGK Y 1204
Cdd:TIGR02168 906 LESKRSE L RR E LEE L REKLA Q LE L RLEG L EV R IDN LQ ERLSEE Y 949
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
472-1040
5.69e-06
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 50.71
E-value: 5.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 472 RHS L VACER R RK E E EL QCARSVYNKTCQTAN E ERKK LA A L QT E V E S L A L H L fymqnie QDVRDDIQVMKQVVRKTET E KM 551
Cdd:COG1196 226 EAE L LLLKL R EL E A EL EELEAELEELEAELE E LEAE LA E L EA E L E E L R L E L ------- EELELELEEAQAEEYELLA E LA 298
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 552 HA E VEK kkqdlfv DQ L T ER SHQ LEE NIALF E AQYLSQA E DTRV L KKAVT E AIT E IDTIAV E KKRILQQWTTSLVGMKHRN 631
Cdd:COG1196 299 RL E QDI ------- AR L E ER RRE LEE RLEEL E EELAELE E ELEE L EEELE E LEE E LEEAEE E LEEAEAELAEAEEALLEAE 371
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 632 EAYKTVMDA L R E CQHQVKSTDSEIEVCKKSIMQE EE KN E K L ARL L N R A E T E ATLVQKMT A QCLSKQ E ALQTEFNTYQLAL 711
Cdd:COG1196 372 AELAEAEEE L E E LAEELLEALRAAAELAAQLEEL EE AE E A L LER L E R L E E E LEELEEAL A ELEEEE E EEEEALEEAAEEE 451
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 712 QDT EE MLNK gyv EHSAVLSE L QATRQAFHQEQ EL RQKMDMSMVDK L QEQGTSSKMTKYFHQLLRK L QKENTNLVTHLSKI 791
Cdd:COG1196 452 AEL EE EEEA --- LLELLAEL L EEAALLEAALA EL LEELAEAAARL L LLLEAEADYEGFLEGVKAA L LLAGLRGLAGAVAV 528
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 792 DGDIAQ A TLDITNTNCKIDMHKKTLAEMDKEVKRFND L ITNSESEIARRTILIE R KQSLINFFNKQLEQMVSELGGEEAG 871
Cdd:COG1196 529 LIGVEA A YEAALEAALAAALQNIVVEDDEVAAAAIEY L KAAKAGRATFLPLDKI R ARAALAAALARGAIGAAVDLVASDL 608
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 872 PLELEIKRLSKL T EEYN T G VA EAQMTW LR LQQE L VQVTH E REEQLVSVDQLKKEV him EQKKLRIESKIAHEKK E QKIVS 951
Cdd:COG1196 609 READARYYVLGD T LLGR T L VA ARLEAA LR RAVT L AGRLR E VTLEGEGGSAGGSLT --- GGSRRELLAALLEAEA E LEELA 685
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 952 RHMRDLDND L SKLNMLLDKNRCSSE E L E QNNIAT E T E FLRTLKDS E R E TIQMQ E K L M E LS E EKATLLNSFMEAEHQIMLW 1031
Cdd:COG1196 686 ERLAEEELE L EEALLAEEEEERELA E A E EERLEE E L E EEALEEQL E A E REELL E E L L E EE E LLEEEALEELPEPPDLEEL 765
....*....
gi 568972640 1032 E KKIQLAKE 1040
Cdd:COG1196 766 E RELERLER 774
PHA03169
PHA03169 hypothetical protein; Provisional
5-147
2.67e-04
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain]
Cd Length: 413
Bit Score: 44.96
E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 5 E DQ A D G R S QQEGQQ SS A E EDSEQQYTEG P EVS P QLEDNGQEIDEGRD P TRS P EEDITTEGGGG segemm DA E KVSTDG E A 84
Cdd:PHA03169 112 E EL A S G L S PENTSG SS P E SPASHSPPPS P PSH P GPHEPAPPESHNPS P NQQ P SSFLQPSHEDS ------ PE E PEPPTS E P 185
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568972640 85 ISEGEVGSNG ETP PETEV efi GETA PD TDV E FIGE T SPGTDVEP T GESIQETE v E SIGEATP G 147
Cdd:PHA03169 186 EPDSPGPPQS ETP TSSPP --- PQSP PD EPG E PQSP T PQQAPSPN T QQAVEHED - E PTEPERE G 244
CCDC158
pfam15921 Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
647-1169
4.30e-04
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain]
Cd Length: 1112
Bit Score: 44.72
E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 647 Q VK S TD S EI E vckks I M QE EEK N EKLARLLNRAET E A T LV Q kmtaqclskqea L QT E FNTYQLALQ D TE E M L N K GY V EHS 726
Cdd:pfam15921 293 Q AN S IQ S QL E ----- I I QE QAR N QNSMYMRQLSDL E S T VS Q ------------ L RS E LREAKRMYE D KI E E L E K QL V LAN 355
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 727 AV L S E LQAT R QA F H QE ----------------- Q E LRQKMDMSMVDK L QEQG T SSKM T ky FHQ L L R K L QKE N TN ------ 783
Cdd:pfam15921 356 SE L T E ARTE R DQ F S QE sgnlddqlqklladlhk R E KELSLEKEQNKR L WDRD T GNSI T -- IDH L R R E L DDR N ME vqrlea 433
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 784 - L VTHL S KID G DIAQATLD I TNT N ---------- CKIDMH K KT L AEMDK E VKRFNDLITN SE SEIARR T ILIER K QSL I N 852
Cdd:pfam15921 434 l L KAMK S ECQ G QMERQMAA I QGK N eslekvsslt AQLEST K EM L RKVVE E LTAKKMTLES SE RTVSDL T ASLQE K ERA I E 513
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 853 FF N KQLEQMV S EL ggeeagpl E L EIKR L SK L - T E EYNTGVAEAQMTW L R LQ ------------ Q ELVQV T ----- H E R EE 914
Cdd:pfam15921 514 AT N AEITKLR S RV -------- D L KLQE L QH L k N E GDHLRNVQTECEA L K LQ maekdkvieilr Q QIENM T qlvgq H G R TA 585
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 915 QLVS V DQLKK E VH I MEQKKLRI E S KI AHE KK EQ KI VSRHM R DL D ND L S K LNM lldknrcsseeleqnn IATET E F LR TL K 994
Cdd:pfam15921 586 GAMQ V EKAQL E KE I NDRRLELQ E F KI LKD KK DA KI RELEA R VS D LE L E K VKL ---------------- VNAGS E R LR AV K 649
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 995 D SER E TI Q M ------- QEK L ME LSE EKAT L LNS F MEAEHQIMLWEK K IQLAKEMRS S VDSE T GQ T EIRAMKAEI H R MKV - 1066
Cdd:pfam15921 650 D IKQ E RD Q L lnevkts RNE L NS LSE DYEV L KRN F RNKSEEMETTTN K LKMQLKSAQ S ELEQ T RN T LKSMEGSDG H A MKV a 729
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1067 --------- RH GQ LLKQ Q E K m I RDM E L A V -- A RR E TIVVQA E g QS K IDKKVI T - K TE ---------- FHY Q Q R E L QK KV R 1124
Cdd:pfam15921 730 mgmqkqita KR GQ IDAL Q S K - I QFL E E A M tn A NK E KHFLKE E - KN K LSQELS T v A TE knkmagelev LRS Q E R R L KE KV A 807
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 568972640 1125 E M HK A T D DCTNTIS E LEETQK flsss L QE KQQLLSEM Q A T T DV L E 1169
Cdd:pfam15921 808 N M EV A L D KASLQFA E CQDIIQ ----- R QE QESVRLKL Q H T L DV K E 847
PRK03918
PRK03918 DNA double-strand break repair ATPase Rad50;
774-1180
7.73e-04
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain]
Cd Length: 880
Bit Score: 43.90
E-value: 7.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 774 L RK L QK E NTN L VTH L SKID G DIAQATLD I TNTNCK I DMH KK TLA E MDKE VK RFND L ITNS E SE I ARRTILI E RKQS L INF 853
Cdd:PRK03918 233 L EE L KE E IEE L EKE L ESLE G SKRKLEEK I RELEER I EEL KK EIE E LEEK VK ELKE L KEKA E EY I KLSEFYE E YLDE L REI 312
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 854 f N K Q L EQMVS E LG G ----- E E AGPL E LEIKR L S K LTE E YNTGVA E AQ m TWLR L QQ E LVQV ----- THEREEQLVSVDQ L K 923
Cdd:PRK03918 313 - E K R L SRLEE E IN G ieeri K E LEEK E ERLEE L K K KLK E LEKRLE E LE - ERHE L YE E AKAK keele RLKKRLTGLTPEK L E 390
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 924 KE VHIM E QK K LR IE SK I ah E K KEQK I vs RHMRDLDND L S K LNML L D K NR ----- C SS E EL E QNNIATET E FLRT LK DS E R 998
Cdd:PRK03918 391 KE LEEL E KA K EE IE EE I -- S K ITAR I -- GELKKEIKE L K K AIEE L K K AK gkcpv C GR E LT E EHRKELLE E YTAE LK RI E K 466
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 999 E TIQMQ EK LME L SE E K a TL L NSFMEA E HQIMLWEKKIQLA KE MRSSV d SETGQT E IRAMKA E IHRM K VRHGQ L LKQQEKM 1078
Cdd:PRK03918 467 E LKEIE EK ERK L RK E L - RE L EKVLKK E SELIKLKELAEQL KE LEEKL - KKYNLE E LEKKAE E YEKL K EKLIK L KGEIKSL 544
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1079 IRDM E LA var R E TIVVQ AE GQS K I D KKVITKT E FHYQQR -------- EL QKKVR E MHKATD --- DCTNTIS ELE ETQ K F L 1147
Cdd:PRK03918 545 KKEL E KL --- E E LKKKL AE LEK K L D ELEEELA E LLKELE elgfesve EL EERLK E LEPFYN eyl ELKDAEK ELE REE K E L 621
410 420 430
....*....|....*....|....*....|...
gi 568972640 1148 SSSLQ E KQQLLS E MQA T TDV LEE EINQ L TA L KR 1180
Cdd:PRK03918 622 KKLEE E LDKAFE E LAE T EKR LEE LRKE L EE L EK 654
2A1904
TIGR00927 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
2-176
2.71e-03
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain]
Cd Length: 1096
Bit Score: 42.29
E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 2 A E PEDQAD G RSQ QEG - QQSSA E ED SE --------- Q Q YT EG p E VSPQLE D NGQ E IDEGR --- DPTRSP E EDITTEGGGGS 68
Cdd:TIGR00927 657 G E NGEESG G EAE QEG e TETKG E NE SE geipaerkg E Q EG EG - E IEAKEA D HKG E TEAEE veh EGETEA E GTEDEGEIETG 735
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 69 E GEMMDAEKVSTDG E AIS E G E V - G SNG ET PP E T E V E FI G ETAP D T dvefi GE TSP G T D V E PT G ESIQ E TE VE SI GE ATP G 147
Cdd:TIGR00927 736 E EGEEVEDEGEGEA E GKH E V E T e G DRK ET EH E G E T E AE G KEDE D E ----- GE IQA G E D G E MK G DEGA E GK VE HE GE TEA G 810
170 180
....*....|....*....|....*....
gi 568972640 148 MDV E PIKKTM T ELNVESIGE ET S E TDVDS 176
Cdd:TIGR00927 811 EKD E HEGQSE T QADDTEVKD ET G E QELNA 839
Name
Accession
Description
Interval
E-value
BRE1
pfam08647 BRE1 E3 ubiquitin ligase; BRE1 is an E3 ubiquitin ligase that has been shown to act as a ...
901-999
9.03e-19
BRE1 E3 ubiquitin ligase; BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions.
Pssm-ID: 462547 [Multi-domain]
Cd Length: 95
Bit Score: 82.25
E-value: 9.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 901 LQ Q ELV QVTHER EE QLVSV D QLK K EVH I M E Q KKLR I E SKI A HEKKEQKIVS R HMRD L D N DLS KLN M LL D K NRCSS E E L EQ 980
Cdd:pfam08647 1 LQ T ELV KLEQAF EE LSEQL D KKV K DLT I L E E KKLR L E AEK A KADQKYFAAM R SKDA L E N ENK KLN T LL S K SSELI E Q L KE 80
90
....*....|....*....
gi 568972640 981 nnia TE T EF L R T LK DS E R E 999
Cdd:pfam08647 81 ---- TE K EF V R K LK NL E K E 95
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
467-1204
9.50e-09
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 60.07
E-value: 9.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 467 E KSHDRHS L VACERRRKE EEL QCARSVYNKTCQTAN E ERKK L AA L QTEV E S L A L HLFYMQNIEQDVRDDIQVMKQVVRKT 546
Cdd:TIGR02168 221 E LRELELA L LVLRLEELR EEL EELQEELKEAEEELE E LTAE L QE L EEKL E E L R L EVSELEEEIEELQKELYALANEISRL 300
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 547 E TE K MHAEVEKK kqdlfvd Q L TERSHQ LE ENIALF E AQYLSQ AE DTRV L KKAVT E AIT E IDTIAV E KKRILQQWTTSLVG 626
Cdd:TIGR02168 301 E QQ K QILRERLA ------- N L ERQLEE LE AQLEEL E SKLDEL AE ELAE L EEKLE E LKE E LESLEA E LEELEAELEELESR 373
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 627 MKHRN E AYK T VMDALRECQH Q VK S TDS EIE VCKKSIMQE E EKN E K L ARLLNRAETEATLVQKMTA Q cl SKQ E A L QT E FNT 706
Cdd:TIGR02168 374 LEELE E QLE T LRSKVAQLEL Q IA S LNN EIE RLEARLERL E DRR E R L QQEIEELLKKLEEAELKEL Q -- AEL E E L EE E LEE 451
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 707 Y Q LA L QDT EE M L NKGYV E HSAVLSE L Q A TRQ afh QEQE L RQKM D MSMVDKLQEQ G T S ---------- S KMTKYFHQ L LRK 776
Cdd:TIGR02168 452 L Q EE L ERL EE A L EELRE E LEEAEQA L D A AER --- ELAQ L QARL D SLERLQENLE G F S egvkallknq S GLSGILGV L SEL 528
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 777 LQKEN ------- TN L VTH L SKIDGDIAQ A TLDITNTNCKIDMHKK T LAEM D KEVKRF ndl I TNSES EI ARRTILIERKQS 849
Cdd:TIGR02168 529 ISVDE gyeaaie AA L GGR L QAVVVENLN A AKKAIAFLKQNELGRV T FLPL D SIKGTE --- I QGNDR EI LKNIEGFLGVAK 605
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 850 LINF F NKQ L EQMV S E L G G eeagpleleikr LSKLTEEYNTGVA ----- EAQMTWLR L QQE LV Q ---- V T HEREEQLV S VD 920
Cdd:TIGR02168 606 DLVK F DPK L RKAL S Y L L G ------------ GVLVVDDLDNALE lakkl RPGYRIVT L DGD LV R pggv I T GGSAKTNS S IL 673
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 921 QLKK E VHIM E Q K KLRI E S KIA HEK K EQKIVSRHMRD L DND L SK L NML L DKNRCSSEE L EQNNIAT E T E FLRTLKDSERET 1000
Cdd:TIGR02168 674 ERRR E IEEL E E K IEEL E E KIA ELE K ALAELRKELEE L EEE L EQ L RKE L EELSRQISA L RKDLARL E A E VEQLEERIAQLS 753
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1001 IQMQ E KLM E LS E EKAT L LNSFM E AEHQIMLW E KKIQLAKEMRSSVDSET gq TEIRAMK AE IHRMKVRHGQ L LKQQ E KMI R 1080
Cdd:TIGR02168 754 KELT E LEA E IE E LEER L EEAEE E LAEAEAEI E ELEAQIEQLKEELKALR -- EALDELR AE LTLLNEEAAN L RERL E SLE R 831
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1081 DMELAVA R R E TIVV Q A E GQ S KIDKKVIT ktefhy QQR EL QKKVR E MHKATDDCT N TISE LEE TQKF L S S S L Q E KQQL L S E 1160
Cdd:TIGR02168 832 RIAATER R L E DLEE Q I E EL S EDIESLAA ------ EIE EL EELIE E LESELEALL N ERAS LEE ALAL L R S E L E E LSEE L R E 905
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 568972640 1161 MQATTDV L EE E INQ L TALKR Q NL L EIVT L QT R GKH LQ AAIEGK Y 1204
Cdd:TIGR02168 906 LESKRSE L RR E LEE L REKLA Q LE L RLEG L EV R IDN LQ ERLSEE Y 949
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
472-1040
5.69e-06
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 50.71
E-value: 5.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 472 RHS L VACER R RK E E EL QCARSVYNKTCQTAN E ERKK LA A L QT E V E S L A L H L fymqnie QDVRDDIQVMKQVVRKTET E KM 551
Cdd:COG1196 226 EAE L LLLKL R EL E A EL EELEAELEELEAELE E LEAE LA E L EA E L E E L R L E L ------- EELELELEEAQAEEYELLA E LA 298
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 552 HA E VEK kkqdlfv DQ L T ER SHQ LEE NIALF E AQYLSQA E DTRV L KKAVT E AIT E IDTIAV E KKRILQQWTTSLVGMKHRN 631
Cdd:COG1196 299 RL E QDI ------- AR L E ER RRE LEE RLEEL E EELAELE E ELEE L EEELE E LEE E LEEAEE E LEEAEAELAEAEEALLEAE 371
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 632 EAYKTVMDA L R E CQHQVKSTDSEIEVCKKSIMQE EE KN E K L ARL L N R A E T E ATLVQKMT A QCLSKQ E ALQTEFNTYQLAL 711
Cdd:COG1196 372 AELAEAEEE L E E LAEELLEALRAAAELAAQLEEL EE AE E A L LER L E R L E E E LEELEEAL A ELEEEE E EEEEALEEAAEEE 451
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 712 QDT EE MLNK gyv EHSAVLSE L QATRQAFHQEQ EL RQKMDMSMVDK L QEQGTSSKMTKYFHQLLRK L QKENTNLVTHLSKI 791
Cdd:COG1196 452 AEL EE EEEA --- LLELLAEL L EEAALLEAALA EL LEELAEAAARL L LLLEAEADYEGFLEGVKAA L LLAGLRGLAGAVAV 528
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 792 DGDIAQ A TLDITNTNCKIDMHKKTLAEMDKEVKRFND L ITNSESEIARRTILIE R KQSLINFFNKQLEQMVSELGGEEAG 871
Cdd:COG1196 529 LIGVEA A YEAALEAALAAALQNIVVEDDEVAAAAIEY L KAAKAGRATFLPLDKI R ARAALAAALARGAIGAAVDLVASDL 608
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 872 PLELEIKRLSKL T EEYN T G VA EAQMTW LR LQQE L VQVTH E REEQLVSVDQLKKEV him EQKKLRIESKIAHEKK E QKIVS 951
Cdd:COG1196 609 READARYYVLGD T LLGR T L VA ARLEAA LR RAVT L AGRLR E VTLEGEGGSAGGSLT --- GGSRRELLAALLEAEA E LEELA 685
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 952 RHMRDLDND L SKLNMLLDKNRCSSE E L E QNNIAT E T E FLRTLKDS E R E TIQMQ E K L M E LS E EKATLLNSFMEAEHQIMLW 1031
Cdd:COG1196 686 ERLAEEELE L EEALLAEEEEERELA E A E EERLEE E L E EEALEEQL E A E REELL E E L L E EE E LLEEEALEELPEPPDLEEL 765
....*....
gi 568972640 1032 E KKIQLAKE 1040
Cdd:COG1196 766 E RELERLER 774
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
501-1259
1.32e-05
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 49.67
E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 501 A NE ERKK L AA L QTEV E s L A LHLFYMQNIEQDVRDDIQ V MKQVVRKT E T E KMHA E VEKKKQD L fv DQ LT ERSHQ LEE NIAL 580
Cdd:TIGR02168 195 L NE LERQ L KS L ERQA E - K A ERYKELKAELRELELALL V LRLEELRE E L E ELQE E LKEAEEE L -- EE LT AELQE LEE KLEE 271
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 581 FEAQYLSQA E DTRV L K K AVTEAIT EI DTIAVE K KRILQQWTTSLVGMKHRNEAYKTVMDA L R E CQHQVKSTDSEI E VC K K 660
Cdd:TIGR02168 272 LRLEVSELE E EIEE L Q K ELYALAN EI SRLEQQ K QILRERLANLERQLEELEAQLEELESK L D E LAEELAELEEKL E EL K E 351
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 661 SIMQE E EKN E K L ARL L NRA E teatlvqkmtaqcl S KQ E A L QTEFN T YQ --- LA L QDTEEM LN KGYVEHS A V L SE L QAT R Q 737
Cdd:TIGR02168 352 ELESL E AEL E E L EAE L EEL E -------------- S RL E E L EEQLE T LR skv AQ L ELQIAS LN NEIERLE A R L ER L EDR R E 417
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 738 AFH QE Q E - L RQ K MDMSMVDK LQ EQGTSSK mtkyfh QL L RK LQ K E NTN L VTH L SKIDGDIAQ A TLDITNTNCKIDMHK --- 813
Cdd:TIGR02168 418 RLQ QE I E e L LK K LEEAELKE LQ AELEELE ------ EE L EE LQ E E LER L EEA L EELREELEE A EQALDAAERELAQLQ arl 491
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 814 KT L AEMDKEVKR F NDLITNSESEIARRTILIERKQS LI NFFNK q L E QMVSELG G EEAGPLEL E IKRLS K LTEEYNTGVAE 893
Cdd:TIGR02168 492 DS L ERLQENLEG F SEGVKALLKNQSGLSGILGVLSE LI SVDEG - Y E AAIEAAL G GRLQAVVV E NLNAA K KAIAFLKQNEL 570
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 894 AQM T W L rlqq E L VQVTH e R E E Q LVSVDQ LK KEVHIMEQK K LRIESKIAHE K KEQKIVSRHM -- R DLDN D L SKLNM L LDKN 971
Cdd:TIGR02168 571 GRV T F L ---- P L DSIKG - T E I Q GNDREI LK NIEGFLGVA K DLVKFDPKLR K ALSYLLGGVL vv D DLDN A L ELAKK L RPGY 645
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 972 R CSSEELEQNN iate TEFLR T LKDSERE -- TIQMQEKLM EL S E EKAT L LNSFM E A E HQIMLWE K KIQLAK E MRSSV dset 1049
Cdd:TIGR02168 646 R IVTLDGDLVR ---- PGGVI T GGSAKTN ss ILERRREIE EL E E KIEE L EEKIA E L E KALAELR K ELEELE E ELEQL ---- 717
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1050 g QT E IRAMKAE I HRMKVRHGQ L LKQQ E KMIRDMELAVARRETIVVQA E GQSKIDKKVITKTEFHYQQR E - L QKKVREMHK 1128
Cdd:TIGR02168 718 - RK E LEELSRQ I SALRKDLAR L EAEV E QLEERIAQLSKELTELEAEI E ELEERLEEAEEELAEAEAEI E e L EAQIEQLKE 796
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1129 ATDDCTNTIS EL EETQKF L SSSLQEKQQL L SEMQATTDVL E EEINQ L TALKRQNLLE I V ------- T L QTRGKH L QAAI E 1201
Cdd:TIGR02168 797 ELKALREALD EL RAELTL L NEEAANLRER L ESLERRIAAT E RRLED L EEQIEELSED I E slaaeie E L EELIEE L ESEL E 876
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568972640 1202 GKY --------- VF L H R NSRSQ L M - E RKR L SVRL S Q L NKV L SSVQ E DYP Q YQEV L QSIQQK I ATKL E T 1259
Cdd:TIGR02168 877 ALL nerasleea LA L L R SELEE L S e E LRE L ESKR S E L RRE L EELR E KLA Q LELR L EGLEVR I DNLQ E R 944
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
875-1201
3.80e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 48.01
E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 875 L EIKR L SKLT EE YNTGVA E AQMTWLR L QQ EL VQVTH E R EE QLVSVDQ L KK E VHIMEQKKLRIESKI A HEKKEQKIVSRHM 954
Cdd:COG1196 232 L KLRE L EAEL EE LEAELE E LEAELEE L EA EL AELEA E L EE LRLELEE L EL E LEEAQAEEYELLAEL A RLEQDIARLEERR 311
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 955 R D L DND L SK L NML L dknrcss E ELE QNNIAT E T E FLRTLKDS E RETIQMQ E KLM EL S E EKAT LL NSFM E AEHQIMLW E K k 1034
Cdd:COG1196 312 R E L EER L EE L EEE L ------- A ELE EELEEL E E E LEELEEEL E EAEEELE E AEA EL A E AEEA LL EAEA E LAEAEEEL E E - 383
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1035 i QLAKEMRSSVDSETGQTEIRAMKAEIHRMKV R HGQ L LKQQ E kmirdm EL AV A RR E TIVVQA E GQSKIDKKVITKT E FHY 1114
Cdd:COG1196 384 - LAEELLEALRAAAELAAQLEELEEAEEALLE R LER L EEEL E ------ EL EE A LA E LEEEEE E EEEALEEAAEEEA E LEE 456
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1115 QQRE L QKKVR E MHKATDDCTNTIS EL E E TQ kfls SSLQEKQQ LL S E MQ A TTDVLE E EINQLTA L KRQNL L -- EIVT L QTR 1192
Cdd:COG1196 457 EEEA L LELLA E LLEEAALLEAALA EL L E EL ---- AEAAARLL LL L E AE A DYEGFL E GVKAALL L AGLRG L ag AVAV L IGV 532
....*....
gi 568972640 1193 GKHLQ AA I E 1201
Cdd:COG1196 533 EAAYE AA L E 541
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
973-1192
1.27e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 45.91
E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 973 CSSEELE Q NNI A T E T E fl RT L KDSER E TIQMQEK L ME L SE E KAT LL NSFMEA E HQ I MLWEKK I QLAKEMRSSVDS E -- TG 1050
Cdd:COG4942 11 LALAAAA Q ADA A A E A E -- AE L EQLQQ E IAELEKE L AA L KK E EKA LL KQLAAL E RR I AALARR I RALEQELAALEA E la EL 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1051 QT EI RAMK AE IHRM K VRHGQ LL KQQEKMI R DME LA VARRETIVVQ A EGQSKID K KVITK ----- T E FHYQQR EL QKKVR E 1125
Cdd:COG4942 89 EK EI AELR AE LEAQ K EELAE LL RALYRLG R QPP LA LLLSPEDFLD A VRRLQYL K YLAPA rreqa E E LRADLA EL AALRA E 168
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568972640 1126 MHKATDDCTNTIS ELEE TQKF L SSSLQ E K Q Q LL SEMQATTDV L EE E INQ L TALKRQNLLE I VT L QTR 1192
Cdd:COG4942 169 LEAERAELEALLA ELEE ERAA L EALKA E R Q K LL ARLEKELAE L AA E LAE L QQEAEELEAL I AR L EAE 235
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
920-1255
1.46e-04
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 46.21
E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 920 DQ LK K E VHIMEQKKL RIE SKIAHEKK E QKIV SR HMRDLDNDLSK L N mlldknrcss E E L E QNN iatetefl RT L KDS E RE 999
Cdd:TIGR02169 684 EG LK R E LSSLQSELR RIE NRLDELSQ E LSDA SR KIGEIEKEIEQ L E ---------- Q E E E KLK -------- ER L EEL E ED 745
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1000 TIQMQEKLMELSE E KAT L LNSFM E A E HQIMLW E KKIQLAKEMR S SVDSETG Q T E IRAMKA E IH R MKV R HGQLLKQQEKMI 1079
Cdd:TIGR02169 746 LSSLEQEIENVKS E LKE L EARIE E L E EDLHKL E EALNDLEARL S HSRIPEI Q A E LSKLEE E VS R IEA R LREIEQKLNRLT 825
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1080 RDM E LAVARRETI vvqaeg Q SKIDKKVITKTEFHYQQRE L QK K VR E MHKATDDCTNTISE LE ETQKF L SSSLQ E KQQL L S 1159
Cdd:TIGR02169 826 LEK E YLEKEIQEL ------ Q EQRIDLKEQIKSIEKEIEN L NG K KE E LEEELEELEAALRD LE SRLGD L KKERD E LEAQ L R 899
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1160 E MQATTDV LE EE I NQLTALKRQNLLEIVT L QTRGKHLQAAI - E GKYVFLHRN S RSQL - M E RK R LSVRLSQ L NK V LSSVQE 1237
Cdd:TIGR02169 900 E LERKIEE LE AQ I EKKRKRLSELKAKLEA L EEELSEIEDPK g E DEEIPEEEL S LEDV q A E LQ R VEEEIRA L EP V NMLAIQ 979
330
....*....|....*...
gi 568972640 1238 D Y PQYQEV L QSIQQ K I A T 1255
Cdd:TIGR02169 980 E Y EEVLKR L DELKE K R A K 997
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
937-1253
1.57e-04
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 46.21
E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 937 ES K IAHEKK E QKI V SRHMRD LD NDLSKLNML L DKN R CSS E EL E QNNIATE ------- T E F L RTLKDS ER ETIQMQEK L ME 1009
Cdd:TIGR02169 169 DR K KEKALE E LEE V EENIER LD LIIDEKRQQ L ERL R RER E KA E RYQALLK ekreyeg Y E L L KEKEAL ER QKEAIERQ L AS 248
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1010 L S EE KAT L LNSFM E A E HQIMLW E KKI - Q L A K EMR ssvds ET G QT E IRAM K AE I HRMKVRHGQ L LKQQEKMI R DM E L A VA R 1088
Cdd:TIGR02169 249 L E EE LEK L TEEIS E L E KRLEEI E QLL e E L N K KIK ----- DL G EE E QLRV K EK I GELEAEIAS L ERSIAEKE R EL E D A EE R 323
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1089 R etivvq A EGQSK IDK KVITKT E FHYQQR E LQ K KVREM hkatddc T NTIS EL E E TQKF L SSS L Q E KQQLLS E MQATTDVL 1168
Cdd:TIGR02169 324 L ------ A KLEAE IDK LLAEIE E LEREIE E ER K RRDKL ------- T EEYA EL K E ELED L RAE L E E VDKEFA E TRDELKDY 390
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1169 E E EINQ L TALKRQNLL E IVT LQ TRGKH L Q ---------- A A IE G K YVF L HRNSRSQLM E R K RLSVR L S QL NKV LS SVQED 1238
Cdd:TIGR02169 391 R E KLEK L KREINELKR E LDR LQ EELQR L S eeladlnaai A G IE A K INE L EEEKEDKAL E I K KQEWK L E QL AAD LS KYEQE 470
330
....*....|....*
gi 568972640 1239 YPQYQ E VLQSIQQKI 1253
Cdd:TIGR02169 471 LYDLK E EYDRVEKEL 485
PHA03169
PHA03169 hypothetical protein; Provisional
5-147
2.67e-04
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain]
Cd Length: 413
Bit Score: 44.96
E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 5 E DQ A D G R S QQEGQQ SS A E EDSEQQYTEG P EVS P QLEDNGQEIDEGRD P TRS P EEDITTEGGGG segemm DA E KVSTDG E A 84
Cdd:PHA03169 112 E EL A S G L S PENTSG SS P E SPASHSPPPS P PSH P GPHEPAPPESHNPS P NQQ P SSFLQPSHEDS ------ PE E PEPPTS E P 185
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568972640 85 ISEGEVGSNG ETP PETEV efi GETA PD TDV E FIGE T SPGTDVEP T GESIQETE v E SIGEATP G 147
Cdd:PHA03169 186 EPDSPGPPQS ETP TSSPP --- PQSP PD EPG E PQSP T PQQAPSPN T QQAVEHED - E PTEPERE G 244
CCDC158
pfam15921 Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
647-1169
4.30e-04
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain]
Cd Length: 1112
Bit Score: 44.72
E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 647 Q VK S TD S EI E vckks I M QE EEK N EKLARLLNRAET E A T LV Q kmtaqclskqea L QT E FNTYQLALQ D TE E M L N K GY V EHS 726
Cdd:pfam15921 293 Q AN S IQ S QL E ----- I I QE QAR N QNSMYMRQLSDL E S T VS Q ------------ L RS E LREAKRMYE D KI E E L E K QL V LAN 355
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 727 AV L S E LQAT R QA F H QE ----------------- Q E LRQKMDMSMVDK L QEQG T SSKM T ky FHQ L L R K L QKE N TN ------ 783
Cdd:pfam15921 356 SE L T E ARTE R DQ F S QE sgnlddqlqklladlhk R E KELSLEKEQNKR L WDRD T GNSI T -- IDH L R R E L DDR N ME vqrlea 433
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 784 - L VTHL S KID G DIAQATLD I TNT N ---------- CKIDMH K KT L AEMDK E VKRFNDLITN SE SEIARR T ILIER K QSL I N 852
Cdd:pfam15921 434 l L KAMK S ECQ G QMERQMAA I QGK N eslekvsslt AQLEST K EM L RKVVE E LTAKKMTLES SE RTVSDL T ASLQE K ERA I E 513
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 853 FF N KQLEQMV S EL ggeeagpl E L EIKR L SK L - T E EYNTGVAEAQMTW L R LQ ------------ Q ELVQV T ----- H E R EE 914
Cdd:pfam15921 514 AT N AEITKLR S RV -------- D L KLQE L QH L k N E GDHLRNVQTECEA L K LQ maekdkvieilr Q QIENM T qlvgq H G R TA 585
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 915 QLVS V DQLKK E VH I MEQKKLRI E S KI AHE KK EQ KI VSRHM R DL D ND L S K LNM lldknrcsseeleqnn IATET E F LR TL K 994
Cdd:pfam15921 586 GAMQ V EKAQL E KE I NDRRLELQ E F KI LKD KK DA KI RELEA R VS D LE L E K VKL ---------------- VNAGS E R LR AV K 649
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 995 D SER E TI Q M ------- QEK L ME LSE EKAT L LNS F MEAEHQIMLWEK K IQLAKEMRS S VDSE T GQ T EIRAMKAEI H R MKV - 1066
Cdd:pfam15921 650 D IKQ E RD Q L lnevkts RNE L NS LSE DYEV L KRN F RNKSEEMETTTN K LKMQLKSAQ S ELEQ T RN T LKSMEGSDG H A MKV a 729
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1067 --------- RH GQ LLKQ Q E K m I RDM E L A V -- A RR E TIVVQA E g QS K IDKKVI T - K TE ---------- FHY Q Q R E L QK KV R 1124
Cdd:pfam15921 730 mgmqkqita KR GQ IDAL Q S K - I QFL E E A M tn A NK E KHFLKE E - KN K LSQELS T v A TE knkmagelev LRS Q E R R L KE KV A 807
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 568972640 1125 E M HK A T D DCTNTIS E LEETQK flsss L QE KQQLLSEM Q A T T DV L E 1169
Cdd:pfam15921 808 N M EV A L D KASLQFA E CQDIIQ ----- R QE QESVRLKL Q H T L DV K E 847
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
566-889
5.44e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 44.28
E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 566 QLT ER SHQL EE NIALF E AQ ylsq A E DTRV L K KA VT E AIT E IDTIAV E KKRILQQWTTSLVGMKHRNEAYKTVMDALRECQ 645
Cdd:TIGR02168 671 SIL ER RREI EE LEEKI E EL ---- E E KIAE L E KA LA E LRK E LEELEE E LEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 646 HQVKSTDS E IEVCKKS I MQE EE KN E KLARL L NR AE T E atlvqkmtaqclsk Q E A L QTEFNTYQLA L QDTE E M L nkgyveh 725
Cdd:TIGR02168 747 ERIAQLSK E LTELEAE I EEL EE RL E EAEEE L AE AE A E -------------- I E E L EAQIEQLKEE L KALR E A L ------- 805
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 726 SAVLS EL QATRQAFHQEQ E LRQKMDMSMVDKLQEQGTSSKMTKYFHQLLRK L QK E NTN L VTHLSKIDGDIAQATLDITNT 805
Cdd:TIGR02168 806 DELRA EL TLLNEEAANLR E RLESLERRIAATERRLEDLEEQIEELSEDIES L AA E IEE L EELIEELESELEALLNERASL 885
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 806 NCKIDMHKKT L A E MDK E VKRFND litnseseia R R TI L IERKQS L inff NKQ L E Q MVSE L G G eeagp LE LE I KR L - SK L T 884
Cdd:TIGR02168 886 EEALALLRSE L E E LSE E LRELES ---------- K R SE L RRELEE L ---- REK L A Q LELR L E G ----- LE VR I DN L q ER L S 946
....*
gi 568972640 885 EEY NT 889
Cdd:TIGR02168 947 EEY SL 951
PRK03918
PRK03918 DNA double-strand break repair ATPase Rad50;
774-1180
7.73e-04
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain]
Cd Length: 880
Bit Score: 43.90
E-value: 7.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 774 L RK L QK E NTN L VTH L SKID G DIAQATLD I TNTNCK I DMH KK TLA E MDKE VK RFND L ITNS E SE I ARRTILI E RKQS L INF 853
Cdd:PRK03918 233 L EE L KE E IEE L EKE L ESLE G SKRKLEEK I RELEER I EEL KK EIE E LEEK VK ELKE L KEKA E EY I KLSEFYE E YLDE L REI 312
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 854 f N K Q L EQMVS E LG G ----- E E AGPL E LEIKR L S K LTE E YNTGVA E AQ m TWLR L QQ E LVQV ----- THEREEQLVSVDQ L K 923
Cdd:PRK03918 313 - E K R L SRLEE E IN G ieeri K E LEEK E ERLEE L K K KLK E LEKRLE E LE - ERHE L YE E AKAK keele RLKKRLTGLTPEK L E 390
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 924 KE VHIM E QK K LR IE SK I ah E K KEQK I vs RHMRDLDND L S K LNML L D K NR ----- C SS E EL E QNNIATET E FLRT LK DS E R 998
Cdd:PRK03918 391 KE LEEL E KA K EE IE EE I -- S K ITAR I -- GELKKEIKE L K K AIEE L K K AK gkcpv C GR E LT E EHRKELLE E YTAE LK RI E K 466
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 999 E TIQMQ EK LME L SE E K a TL L NSFMEA E HQIMLWEKKIQLA KE MRSSV d SETGQT E IRAMKA E IHRM K VRHGQ L LKQQEKM 1078
Cdd:PRK03918 467 E LKEIE EK ERK L RK E L - RE L EKVLKK E SELIKLKELAEQL KE LEEKL - KKYNLE E LEKKAE E YEKL K EKLIK L KGEIKSL 544
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1079 IRDM E LA var R E TIVVQ AE GQS K I D KKVITKT E FHYQQR -------- EL QKKVR E MHKATD --- DCTNTIS ELE ETQ K F L 1147
Cdd:PRK03918 545 KKEL E KL --- E E LKKKL AE LEK K L D ELEEELA E LLKELE elgfesve EL EERLK E LEPFYN eyl ELKDAEK ELE REE K E L 621
410 420 430
....*....|....*....|....*....|...
gi 568972640 1148 SSSLQ E KQQLLS E MQA T TDV LEE EINQ L TA L KR 1180
Cdd:PRK03918 622 KKLEE E LDKAFE E LAE T EKR LEE LRKE L EE L EK 654
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
665-1036
9.83e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 43.51
E-value: 9.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 665 EEEKNEK L A R LLNRA E T E AT l VQKMTAQCLSKQE AL Q t E FNTYQLA L QDTE E M L N K GYV E H S AVL S E L QATRQAFHQ E Q E 744
Cdd:TIGR02168 666 AKTNSSI L E R RREIE E L E EK - IEELEEKIAELEK AL A - E LRKELEE L EEEL E Q L R K ELE E L S RQI S A L RKDLARLEA E V E 743
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 745 LRQKM dmsmvd KL Q EQGTSSKMTKYFHQ L LRK L QKENTN L VTHLSK I dgdi AQATLD I TNTNCKIDMHKKT L A E MDK E VK 824
Cdd:TIGR02168 744 QLEER ------ IA Q LSKELTELEAEIEE L EER L EEAEEE L AEAEAE I ---- EELEAQ I EQLKEELKALREA L D E LRA E LT 813
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 825 RF N DLIT N SESEIARRTIL I ERKQSLINFFNK Q L E QM vselggeeagpl ELE I KR L SKLT EE YNTGVA E aqmtwlr L QQ E 904
Cdd:TIGR02168 814 LL N EEAA N LRERLESLERR I AATERRLEDLEE Q I E EL ------------ SED I ES L AAEI EE LEELIE E ------- L ES E 874
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 905 L VQVTH ER EEQLVSVDQ L KK E VHIMEQKKLRI ESK iahekkeqkivsrh MRD L DND L SK L NML L DKNRCSS E E LE QN nia 984
Cdd:TIGR02168 875 L EALLN ER ASLEEALAL L RS E LEELSEELREL ESK -------------- RSE L RRE L EE L REK L AQLELRL E G LE VR --- 937
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 568972640 985 tetef LRT L KDSER E TIQMQ ek L M E LSEEKATLLNSFM EA EHQIMLW E K KI Q 1036
Cdd:TIGR02168 938 ----- IDN L QERLS E EYSLT -- L E E AEALENKIEDDEE EA RRRLKRL E N KI K 982
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
874-1203
1.11e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 43.39
E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 874 ELE i KR L SK L TEE yntgv AE AQMTWLR L QQ EL VQV th E R E EQ L VSVDQ L KK E VHIM E QKKLRI E SKIAHEKK E QKIVSRH 953
Cdd:COG1196 197 ELE - RQ L EP L ERQ ----- AE KAERYRE L KE EL KEL -- E A E LL L LKLRE L EA E LEEL E AELEEL E AELEELEA E LAELEAE 268
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 954 MRD L DND L SK L N mlldknrcss E ELE QNN i A T E T E F L RT L KDS E RETIQMQ E KLM EL S E EKA tllnsfm E A E HQIMLW E K 1033
Cdd:COG1196 269 LEE L RLE L EE L E ---------- L ELE EAQ - A E E Y E L L AE L ARL E QDIARLE E RRR EL E E RLE ------- E L E EELAEL E E 330
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1034 KIQLAK E mrssv DS E TGQT E IRAMKA E IHRMKVRHGQLLKQQEKMIRDMEL A VARR E TIVVQAEGQSK idkkvi TKT E FH 1113
Cdd:COG1196 331 ELEELE E ----- EL E ELEE E LEEAEE E LEEAEAELAEAEEALLEAEAELAE A EEEL E ELAEELLEALR ------ AAA E LA 399
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1114 Y Q QR EL QKKVREMHKATDDCTNTIS ELEE TQKF L SSSLQ E KQQL L S E MQATTDV LEEE INQ L TA L KRQN L L E IVT L QTRG 1193
Cdd:COG1196 400 A Q LE EL EEAEEALLERLERLEEELE ELEE ALAE L EEEEE E EEEA L E E AAEEEAE LEEE EEA L LE L LAEL L E E AAL L EAAL 479
330
....*....|
gi 568972640 1194 KH L QAAIEGK 1203
Cdd:COG1196 480 AE L LEELAEA 489
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
641-1028
2.12e-03
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 42.36
E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 641 L RECQHQVKSTDS E IEVCKKSIMQE E EKNEK L ARL L NR A ETEATLVQ K MTA Q CLSKQ E A L QTEFNTYQLA L QDT E EMLNK 720
Cdd:TIGR02169 676 L QRLRERLEGLKR E LSSLQSELRRI E NRLDE L SQE L SD A SRKIGEIE K EIE Q LEQEE E K L KERLEELEED L SSL E QEIEN 755
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 721 GYV E HSAVLSELQATRQAF H QEQ E ---- L RQKMDM S MVDKL Q EQ gtsskmtkyfhql L R KL QK E NTNLVTH L SK I DGDIA 796
Cdd:TIGR02169 756 VKS E LKELEARIEELEEDL H KLE E alnd L EARLSH S RIPEI Q AE ------------- L S KL EE E VSRIEAR L RE I EQKLN 822
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 797 QA TL D itntnckidmh K KT L AEMDK E VKRFNDLITNSESE I ARR tilierkqsl I NFF N KQL E QMVS EL GGE EA GPLE LE 876
Cdd:TIGR02169 823 RL TL E ----------- K EY L EKEIQ E LQEQRIDLKEQIKS I EKE ---------- I ENL N GKK E ELEE EL EEL EA ALRD LE 881
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 877 i K RL SK L TE E Y ntgvaeaqmtw LR L QQE L VQVTHER EE QLVSVDQLK K EVHIMEQ K KLRI E SKIAH - E KKEQKIVSRHMR 955
Cdd:TIGR02169 882 - S RL GD L KK E R ----------- DE L EAQ L RELERKI EE LEAQIEKKR K RLSELKA K LEAL E EELSE i E DPKGEDEEIPEE 949
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 956 D L D nd L SKLNML L DKNRCSSEE LE QN N IATET E FLRT LK DSE reti QMQ EK LME L S EE KATL L ----------- NS FMEA 1024
Cdd:TIGR02169 950 E L S -- L EDVQAE L QRVEEEIRA LE PV N MLAIQ E YEEV LK RLD ---- ELK EK RAK L E EE RKAI L erieeyekkkr EV FMEA 1023
....
gi 568972640 1025 EHQ I 1028
Cdd:TIGR02169 1024 FEA I 1027
2A1904
TIGR00927 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
2-176
2.71e-03
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain]
Cd Length: 1096
Bit Score: 42.29
E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 2 A E PEDQAD G RSQ QEG - QQSSA E ED SE --------- Q Q YT EG p E VSPQLE D NGQ E IDEGR --- DPTRSP E EDITTEGGGGS 68
Cdd:TIGR00927 657 G E NGEESG G EAE QEG e TETKG E NE SE geipaerkg E Q EG EG - E IEAKEA D HKG E TEAEE veh EGETEA E GTEDEGEIETG 735
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 69 E GEMMDAEKVSTDG E AIS E G E V - G SNG ET PP E T E V E FI G ETAP D T dvefi GE TSP G T D V E PT G ESIQ E TE VE SI GE ATP G 147
Cdd:TIGR00927 736 E EGEEVEDEGEGEA E GKH E V E T e G DRK ET EH E G E T E AE G KEDE D E ----- GE IQA G E D G E MK G DEGA E GK VE HE GE TEA G 810
170 180
....*....|....*....|....*....
gi 568972640 148 MDV E PIKKTM T ELNVESIGE ET S E TDVDS 176
Cdd:TIGR00927 811 EKD E HEGQSE T QADDTEVKD ET G E QELNA 839
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
420-619
3.16e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 41.85
E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 420 L NRQMDK L KLDVQ EL DVATKQTRSQRQ EL GVN L YGVQQH L AR L QMQ LE KSHDRHSLVAC E RRRK EE E L QC A RSVYNKTCQ 499
Cdd:COG1196 300 L EQDIAR L EERRR EL EERLEELEEELA EL EEE L EELEEE L EE L EEE LE EAEEELEEAEA E LAEA EE A L LE A EAELAEAEE 379
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 500 TAN E ERKK L AALQTEVES LA LH L FYMQNI E QDVRDDIQVMKQVVRKT E TEKMHA E V E KKKQDLFVDQLT E RSHQ LEE NIA 579
Cdd:COG1196 380 ELE E LAEE L LEALRAAAE LA AQ L EELEEA E EALLERLERLEEELEEL E EALAEL E E E EEEEEEALEEAA E EEAE LEE EEE 459
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568972640 580 LFEAQYLSQA E DTRV L KK A VT E AIT E IDTI A VEKKRI L QQ 619
Cdd:COG1196 460 ALLELLAELL E EAAL L EA A LA E LLE E LAEA A ARLLLL L EA 499
235kDa-fam
TIGR01612 reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
647-1023
5.73e-03
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain]
Cd Length: 2757
Bit Score: 41.19
E-value: 5.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 647 Q VK STDS EIE VCK K S I MQ E EE K N EKL ARLLN -------- RAET E A TL VQ K MTAQ C LS K QEA L QT ---------------- 702
Cdd:TIGR01612 1366 E VK EYTK EIE ENN K N I KD E LD K S EKL IKKIK ddinleec KSKI E S TL DD K DIDE C IK K IKE L KN hilseesnidtyfkna 1445
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 703 - E F N TYQ L A L QDTE EM LNKG y VE H SAVLSELQ AT RQAFHQEQ EL RQKM D M S MVD K l Q E QGTSS K MTKYFHQ L LRKLQ K EN 781
Cdd:TIGR01612 1446 d E N N ENV L L L FKNI EM ADNK - SQ H ILKIKKDN AT NDHDFNIN EL KEHI D K S KGC K - D E ADKNA K AIEKNKE L FEQYK K DV 1523
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 782 T N L VTHL S -- K I DGDI A QATL D ITNTNCK I - D M HKK TLA E MD K EVKRFNDLITNS --- E SEI A RRT ---- IL I ERKQ SL I 851
Cdd:TIGR01612 1524 T E L LNKY S al A I KNKF A KTKK D SEIIIKE I k D A HKK FIL E AE K SEQKIKEIKKEK fri E DDA A KND ksnk AA I DIQL SL E 1603
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 852 NF F NK Q L E qm V S ELGGE ------ E AGPL E LE I KRL S KLTEE yn T GVA E AQMTWLR LQ QE L VQVTHERE eqlv SVDQL KKE 925
Cdd:TIGR01612 1604 NF E NK F L K -- I S DIKKK indclk E TESI E KK I SSF S IDSQD -- T ELK E NGDNLNS LQ EF L ESLKDQKK ---- NIEDK KKE 1675
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 926 VHIMEQKKLR IE SKIAHE KK EQK I vsrhmrdld NDLS K LNMLLDK N RCSS E ELEQNNIA T ETEFLRTLKDSER E T I QMQ E 1005
Cdd:TIGR01612 1676 LDELDSEIEK IE IDVDQH KK NYE I --------- GIIE K IKEIAIA N KEEI E SIKELIEP T IENLISSFNTNDL E G I DPN E 1746
410
....*....|....*...
gi 568972640 1006 KL M E LSE E KATLLNS F M E 1023
Cdd:TIGR01612 1747 KL E E YNT E IGDIYEE F I E 1764
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
900-1129
5.96e-03
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 40.52
E-value: 5.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 900 RLQQ EL V Q VTH E RE E QLVSVDQ LKKE VHIMEQKKLRI E SK IA HEKKEQKIVSRHMRD L DND L SK L nmlldknrcsseele 979
Cdd:COG4942 24 EAEA EL E Q LQQ E IA E LEKELAA LKKE EKALLKQLAAL E RR IA ALARRIRALEQELAA L EAE L AE L --------------- 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 980 QNN IA TETEF L RTL K DSER E TIQMQEK L MELSEEKAT L L - NS F ME A EHQIMLWE kki Q LA KEM R SSVDS - ETGQT E IR A M 1057
Cdd:COG4942 89 EKE IA ELRAE L EAQ K EELA E LLRALYR L GRQPPLALL L S p ED F LD A VRRLQYLK --- Y LA PAR R EQAEE l RADLA E LA A L 165
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568972640 1058 K AE IHRMKVRHGQ LL KQQ E KMIRDM E LAV A R R ETIVVQA E GQSKIDKKVITKTEF hy QQR EL QKKVREMHKA 1129
Cdd:COG4942 166 R AE LEAERAELEA LL AEL E EERAAL E ALK A E R QKLLARL E KELAELAAELAELQQ -- EAE EL EALIARLEAE 235
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
792-1171
8.13e-03
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 40.44
E-value: 8.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 792 D GDIAQ A TLDITNTNCK I DMHKKTLA E MDKEVK R FNDLITNS E SEI A RRTILI E RKQSLINFFNKQ LE QMVSELGGEE A G 871
Cdd:TIGR02169 169 D RKKEK A LEELEEVEEN I ERLDLIID E KRQQLE R LRREREKA E RYQ A LLKEKR E YEGYELLKEKEA LE RQKEAIERQL A S 248
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 872 p LE L E IKR L SKLTE E YNTGVA E AQM twl R L QQELVQVTHER EE QLV svd QL K KEVHIM E QKKLRI E SK IA h EK KEQ kivs 951
Cdd:TIGR02169 249 - LE E E LEK L TEEIS E LEKRLE E IEQ --- L L EELNKKIKDLG EE EQL --- RV K EKIGEL E AEIASL E RS IA - EK ERE ---- 316
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 952 rh MR D LDND L S KL NMLL DK NRCSS EELE qnniatetefl R TLKDSERETIQMQ E KLM EL S EE KAT L LNSFM E AEHQIMLW 1031
Cdd:TIGR02169 317 -- LE D AEER L A KL EAEI DK LLAEI EELE ----------- R EIEEERKRRDKLT E EYA EL K EE LED L RAELE E VDKEFAET 383
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1032 EKKIQLAK E MRSSVDS E tgqteiram KA E IH R MKV R HGQL L KQQEKMIR D MEL A V A RR E tivvqaegq S KI DKKVIT K TE 1111
Cdd:TIGR02169 384 RDELKDYR E KLEKLKR E --------- IN E LK R ELD R LQEE L QRLSEELA D LNA A I A GI E --------- A KI NELEEE K ED 445
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1112 FHYQQRELQK K VREMHKATDDCTNTISE L E E TQKFLSSS L QEK Q QL L S E MQ A TTDVL EE E 1171
Cdd:TIGR02169 446 KALEIKKQEW K LEQLAADLSKYEQELYD L K E EYDRVEKE L SKL Q RE L A E AE A QARAS EE R 505
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
808-1078
8.23e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 40.69
E-value: 8.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 808 K IDMHKKT L A E MDK E VKRFNDLITNS E S E I A RRTILI E RKQSLINFFNKQ LE QMVS E L -- GGE E AGP LE LE I K RL SKLTE 885
Cdd:COG1196 233 K LRELEAE L E E LEA E LEELEAELEEL E A E L A ELEAEL E ELRLELEELELE LE EAQA E E ye LLA E LAR LE QD I A RL EERRR 312
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 886 E YNTGVA E AQMTWLR L QQ EL VQVTH E R EE QLVSVDQLKK E VHIM E QKKLRI E SKIAHEKK E QKIVSRHMRD L DND L SK ln 965
Cdd:COG1196 313 E LEERLE E LEEELAE L EE EL EELEE E L EE LEEELEEAEE E LEEA E AELAEA E EALLEAEA E LAEAEEELEE L AEE L LE -- 390
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 966 ml LDKNRCSSEELEQNNIAT E TEF L RT L KDS E R E TIQMQ E K L M EL S EE KATLLNSFM EA EHQIMLW E KKIQLAK E MRSSV 1045
Cdd:COG1196 391 -- ALRAAAELAAQLEELEEA E EAL L ER L ERL E E E LEELE E A L A EL E EE EEEEEEALE EA AEEEAEL E EEEEALL E LLAEL 468
250 260 270
....*....|....*....|....*....|....*
gi 568972640 1046 DS E T -- GQTEIRAMKA E IHRMKV R HGQ LL KQQEKM 1078
Cdd:COG1196 469 LE E A al LEAALAELLE E LAEAAA R LLL LL EAEADY 503
YhaN
COG4717 Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
873-1255
9.95e-03
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain]
Cd Length: 641
Bit Score: 40.14
E-value: 9.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 873 LE L E I K RLSKLT EEY NTGVA E AQ mtwl R L QQ EL VQVTH E R EE QLVSVDQ L K K -- EVHIME Q KKLRI E SKI A HEKKEQKIV 950
Cdd:COG4717 76 LE E E L K EAEEKE EEY AELQE E LE ---- E L EE EL EELEA E L EE LREELEK L E K ll QLLPLY Q ELEAL E AEL A ELPERLEEL 151
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 951 SRHMRD L DNDLSK L NM L LDKNRCSS EELE QNNIATETEFLRT L K D SER E TIQM Q EK L M EL S EE KATLLNSFM E A E HQIML 1030
Cdd:COG4717 152 EERLEE L RELEEE L EE L EAELAELQ EELE ELLEQLSLATEEE L Q D LAE E LEEL Q QR L A EL E EE LEEAQEELE E L E EELEQ 231
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1031 W E KKIQL A ------ KE M R SSVDSETGQTEIRAMKAEIHR --------------- MKVRHGQ L LKQQEKMIRDM E LAV A RR 1089
Cdd:COG4717 232 L E NELEA A aleerl KE A R LLLLIAAALLALLGLGGSLLS liltiagvlflvlgl LALLFLL L AREKASLGKEA E ELQ A LP 311
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1090 ETIVVQA E GQSKIDKKVITKTEFHYQQ - R EL QKKVR E MHKATDDCTNTIS EL E etqkf L SSSL QE KQQ LL S E MQATT dvl 1168
Cdd:COG4717 312 ALEELEE E ELEELLAALGLPPDLSPEE l L EL LDRIE E LQELLREAEELEE EL Q ----- L EELE QE IAA LL A E AGVED --- 383
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568972640 1169 EEE INQLTALKR qnll E IVT L QTRGKH L QAAI E GKYVF L HRNSRSQ lm ERKR L SVR L SQ L NKV L SSVQ E DYPQYQ E V L QS 1248
Cdd:COG4717 384 EEE LRAALEQAE ---- E YQE L KEELEE L EEQL E ELLGE L EELLEAL -- DEEE L EEE L EE L EEE L EELE E ELEELR E E L AE 457
....*..
gi 568972640 1249 IQQKIAT 1255
Cdd:COG4717 458 LEAELEQ 464
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
