|
Name |
Accession |
Description |
Interval |
E-value |
| Bromodomain |
cd04369 |
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear ... |
137-193 |
7.64e-12 |
|
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
:
Pssm-ID: 99922 [Multi-domain] Cd Length: 99 Bit Score: 63.55 E-value: 7.64e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 569007239 137 MCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKL 193
Cdd:cd04369 43 MDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
|
| Herpes_BLLF1 super family |
cl37540 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1472-1828 |
4.78e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
The actual alignment was detected with superfamily member pfam05109:
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 48.37 E-value: 4.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1472 TFSGIGASVPLSSLSVASSPASAGTRPPVLVSGNDTSSRIMPVLSNRLCPSNLGNTVAIS-TVKTGHLASSVLISTTQ-- 1548
Cdd:pfam05109 406 TRTATNATTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGpTVSTADVTSPTPAGTTSga 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1549 ----PTVSPK-----CLTPALQIPVT-VALPTPVTTSPKIINTVPQsatiPGATRPvSLSKRQSQTSLQFQSPGTTTivP 1618
Cdd:pfam05109 486 spvtPSPSPRdngteSKAPDMTSPTSaVTTPTPNATSPTPAVTTPT----PNATSP-TLGKTSPTSAVTTPTPNATS--P 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1619 TNANTNKPPAELSPSAspGKIVNISNVTSMPNQHMSPSLVKST----LGNNSIAGGSAIHTC-SPPSNITSLAGAPfsep 1693
Cdd:pfam05109 559 TPAVTTPTPNATIPTL--GKTSPTSAVTTPTPNATSPTVGETSpqanTTNHTLGGTSSTPVVtSPPKNATSAVTTG---- 632
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1694 ciQQKIVINTSTPLAPGTQIMmngARFIVPPQGLGAGSHV-LLISTNPKYGPPLVlnsgqsiLATPVDNPVQKIiqtSNS 1772
Cdd:pfam05109 633 --QHNITSSSTSSMSLRPSSI---SETLSPSTSDNSTSHMpLLTSAHPTGGENIT-------QVTPASTSTHHV---STS 697
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 569007239 1773 SLSGQPLKPSVRNSPKTVNSLGSPSSLSAVHTPPhiintPAKVCVPPAPPAALTSV 1828
Cdd:pfam05109 698 SPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTP-----PKNATSPQAPSGQKTAV 748
|
|
| Herpes_BLLF1 super family |
cl37540 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
951-1206 |
1.86e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
The actual alignment was detected with superfamily member pfam05109:
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 43.37 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 951 VEKEIAAPQQKGP-----EHCSPGPQTSASCSlvsVPVTSVSTQLPNTVLSKTSTPSSNVSARSQPLSPVASVSNALTSP 1025
Cdd:pfam05109 454 VPTNLTAPASTGPtvstaDVTSPTPAGTTSGA---SPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTP 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1026 VKTSQSEAGKVKSTASSTTLPQPH-TSPTisstvqpllPATTlneSTDPGSSIPCFSQQT----VDSSEAKQELKTVCIR 1100
Cdd:pfam05109 531 TPNATSPTLGKTSPTSAVTTPTPNaTSPT---------PAVT---TPTPNATIPTLGKTSptsaVTTPTPNATSPTVGET 598
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1101 DSQSILVRTRGGNTGVVKVQTNPEQNSPNSLSsssvftfTPQFQaflVPKSTSCSASSQVAGVTTTSSlPSFSQASTS-V 1179
Cdd:pfam05109 599 SPQANTTNHTLGGTSSTPVVTSPPKNATSAVT-------TGQHN---ITSSSTSSMSLRPSSISETLS-PSTSDNSTShM 667
|
250 260
....*....|....*....|....*..
gi 569007239 1180 SISCGFHPPMGKNLKSTQGQTLSSGYV 1206
Cdd:pfam05109 668 PLLTSAHPTGGENITQVTPASTSTHHV 694
|
|
| PRK03918 super family |
cl35229 |
DNA double-strand break repair ATPase Rad50; |
601-799 |
2.22e-03 |
|
DNA double-strand break repair ATPase Rad50;
The actual alignment was detected with superfamily member PRK03918:
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 601 LDELRELITKIENELKDLENSRKKSGKWYHRRQAVKELHSTlirllnellpwEPKLMKAfqrNRSRLKKDYDDFRRqpdh 680
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL-----------EEKLKKY---NLEELEKKAEEYEK---- 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 681 gqfTRELWATDECE-GNPEREAPKAEVSKSVDAA--EPLDTLEKEQEGSDDmKLSEIGFPMARS---------KLLKKEL 748
Cdd:PRK03918 530 ---LKEKLIKLKGEiKSLKKELEKLEELKKKLAEleKKLDELEEELAELLK-ELEELGFESVEEleerlkelePFYNEYL 605
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 569007239 749 PSKDIVKTLPKTLKRQSKQSSYLDDSTKELSpRKKAKLSTNETSVENLEVN 799
Cdd:PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEELA-ETEKRLEELRKELEELEKK 655
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Bromodomain |
cd04369 |
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear ... |
137-193 |
7.64e-12 |
|
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Pssm-ID: 99922 [Multi-domain] Cd Length: 99 Bit Score: 63.55 E-value: 7.64e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 569007239 137 MCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKL 193
Cdd:cd04369 43 MDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
|
| BROMO |
smart00297 |
bromo domain; |
137-196 |
3.06e-09 |
|
bromo domain;
Pssm-ID: 197636 [Multi-domain] Cd Length: 107 Bit Score: 56.13 E-value: 3.06e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 137 MCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKLALL 196
Cdd:smart00297 48 MDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKLREL 107
|
|
| COG5076 |
COG5076 |
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin ... |
137-193 |
1.30e-06 |
|
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription];
Pssm-ID: 227408 [Multi-domain] Cd Length: 371 Bit Score: 52.89 E-value: 1.30e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 569007239 137 MCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKL 193
Cdd:COG5076 189 MDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLI 245
|
|
| Bromodomain |
pfam00439 |
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin ... |
137-184 |
1.54e-05 |
|
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 425683 [Multi-domain] Cd Length: 84 Bit Score: 45.00 E-value: 1.54e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 569007239 137 MCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQK 184
Cdd:pfam00439 37 MDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGSVIYKAAEK 84
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1472-1828 |
4.78e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 48.37 E-value: 4.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1472 TFSGIGASVPLSSLSVASSPASAGTRPPVLVSGNDTSSRIMPVLSNRLCPSNLGNTVAIS-TVKTGHLASSVLISTTQ-- 1548
Cdd:pfam05109 406 TRTATNATTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGpTVSTADVTSPTPAGTTSga 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1549 ----PTVSPK-----CLTPALQIPVT-VALPTPVTTSPKIINTVPQsatiPGATRPvSLSKRQSQTSLQFQSPGTTTivP 1618
Cdd:pfam05109 486 spvtPSPSPRdngteSKAPDMTSPTSaVTTPTPNATSPTPAVTTPT----PNATSP-TLGKTSPTSAVTTPTPNATS--P 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1619 TNANTNKPPAELSPSAspGKIVNISNVTSMPNQHMSPSLVKST----LGNNSIAGGSAIHTC-SPPSNITSLAGAPfsep 1693
Cdd:pfam05109 559 TPAVTTPTPNATIPTL--GKTSPTSAVTTPTPNATSPTVGETSpqanTTNHTLGGTSSTPVVtSPPKNATSAVTTG---- 632
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1694 ciQQKIVINTSTPLAPGTQIMmngARFIVPPQGLGAGSHV-LLISTNPKYGPPLVlnsgqsiLATPVDNPVQKIiqtSNS 1772
Cdd:pfam05109 633 --QHNITSSSTSSMSLRPSSI---SETLSPSTSDNSTSHMpLLTSAHPTGGENIT-------QVTPASTSTHHV---STS 697
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 569007239 1773 SLSGQPLKPSVRNSPKTVNSLGSPSSLSAVHTPPhiintPAKVCVPPAPPAALTSV 1828
Cdd:pfam05109 698 SPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTP-----PKNATSPQAPSGQKTAV 748
|
|
| PRK13042 |
PRK13042 |
superantigen-like protein SSL4; Reviewed; |
1527-1632 |
1.84e-03 |
|
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 42.31 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1527 TVAISTVKTGHLASSVLISTTQPTVSpkcltpalQIPVTVALPTPVTTSPKIINTVPQSAtiPGATRPVSLSKRQSQTSL 1606
Cdd:PRK13042 5 TIAKTSLALGLLTTGVITTTTQAANA--------TTPSSTKVEAPQSTPPSTKVEAPQSK--PNATTPPSTKVEAPQQTP 74
|
90 100
....*....|....*....|....*..
gi 569007239 1607 QFQSPGTTTI-VPTNANTNKPPAELSP 1632
Cdd:PRK13042 75 NATTPSSTKVeTPQSPTTKQVPTEINP 101
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
951-1206 |
1.86e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 43.37 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 951 VEKEIAAPQQKGP-----EHCSPGPQTSASCSlvsVPVTSVSTQLPNTVLSKTSTPSSNVSARSQPLSPVASVSNALTSP 1025
Cdd:pfam05109 454 VPTNLTAPASTGPtvstaDVTSPTPAGTTSGA---SPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTP 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1026 VKTSQSEAGKVKSTASSTTLPQPH-TSPTisstvqpllPATTlneSTDPGSSIPCFSQQT----VDSSEAKQELKTVCIR 1100
Cdd:pfam05109 531 TPNATSPTLGKTSPTSAVTTPTPNaTSPT---------PAVT---TPTPNATIPTLGKTSptsaVTTPTPNATSPTVGET 598
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1101 DSQSILVRTRGGNTGVVKVQTNPEQNSPNSLSsssvftfTPQFQaflVPKSTSCSASSQVAGVTTTSSlPSFSQASTS-V 1179
Cdd:pfam05109 599 SPQANTTNHTLGGTSSTPVVTSPPKNATSAVT-------TGQHN---ITSSSTSSMSLRPSSISETLS-PSTSDNSTShM 667
|
250 260
....*....|....*....|....*..
gi 569007239 1180 SISCGFHPPMGKNLKSTQGQTLSSGYV 1206
Cdd:pfam05109 668 PLLTSAHPTGGENITQVTPASTSTHHV 694
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
601-799 |
2.22e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 601 LDELRELITKIENELKDLENSRKKSGKWYHRRQAVKELHSTlirllnellpwEPKLMKAfqrNRSRLKKDYDDFRRqpdh 680
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL-----------EEKLKKY---NLEELEKKAEEYEK---- 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 681 gqfTRELWATDECE-GNPEREAPKAEVSKSVDAA--EPLDTLEKEQEGSDDmKLSEIGFPMARS---------KLLKKEL 748
Cdd:PRK03918 530 ---LKEKLIKLKGEiKSLKKELEKLEELKKKLAEleKKLDELEEELAELLK-ELEELGFESVEEleerlkelePFYNEYL 605
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 569007239 749 PSKDIVKTLPKTLKRQSKQSSYLDDSTKELSpRKKAKLSTNETSVENLEVN 799
Cdd:PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEELA-ETEKRLEELRKELEELEKK 655
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Bromodomain |
cd04369 |
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear ... |
137-193 |
7.64e-12 |
|
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Pssm-ID: 99922 [Multi-domain] Cd Length: 99 Bit Score: 63.55 E-value: 7.64e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 569007239 137 MCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKL 193
Cdd:cd04369 43 MDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
|
| Bromo_Brdt_II_like |
cd05498 |
Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET ... |
83-192 |
1.91e-09 |
|
Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99930 Cd Length: 102 Bit Score: 56.52 E-value: 1.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 83 YRILGEFLQEKHRGLTAPFLQPLGGVAAGEEEVAEGRrsggrgsrvppQQPsqgMCLLKMEEKFSSGQYRGITEFVADFR 162
Cdd:cd05498 6 SGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDII-----------KHP---MDLSTIKKKLDNREYADAQEFAADVR 71
|
90 100 110
....*....|....*....|....*....|
gi 569007239 163 LMLETCYRLHGVDHWISKQGQKLEMLLEQK 192
Cdd:cd05498 72 LMFSNCYKYNPPDHPVHAMARKLQDVFEDR 101
|
|
| BROMO |
smart00297 |
bromo domain; |
137-196 |
3.06e-09 |
|
bromo domain;
Pssm-ID: 197636 [Multi-domain] Cd Length: 107 Bit Score: 56.13 E-value: 3.06e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 137 MCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKLALL 196
Cdd:smart00297 48 MDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKLREL 107
|
|
| Bromo_BDF1_2_II |
cd05499 |
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast ... |
78-193 |
3.68e-09 |
|
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99931 Cd Length: 102 Bit Score: 55.75 E-value: 3.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 78 ELQQGYRILGEFLQEKHRGLTAPFLQPLGGVAAGeeevaegrrsggrgsrVPP-----QQPsqgMCLLKMEEKFSSGQYR 152
Cdd:cd05499 1 ELKFCEEVLKELMKPKHSAYNWPFLDPVDPVALN----------------IPNyfsiiKKP---MDLGTISKKLQNGQYQ 61
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 569007239 153 GITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKL 193
Cdd:cd05499 62 SAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEEVFNDKW 102
|
|
| Bromo_BDF1_2_I |
cd05500 |
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast ... |
137-193 |
6.30e-08 |
|
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99932 Cd Length: 103 Bit Score: 52.32 E-value: 6.30e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 569007239 137 MCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKL 193
Cdd:cd05500 47 MDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVSQMGKRLQAAFEKHL 103
|
|
| COG5076 |
COG5076 |
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin ... |
137-193 |
1.30e-06 |
|
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription];
Pssm-ID: 227408 [Multi-domain] Cd Length: 371 Bit Score: 52.89 E-value: 1.30e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 569007239 137 MCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKL 193
Cdd:COG5076 189 MDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLI 245
|
|
| Bromo_gcn5_like |
cd05509 |
Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates ... |
137-193 |
7.29e-06 |
|
Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99941 [Multi-domain] Cd Length: 101 Bit Score: 46.39 E-value: 7.29e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 569007239 137 MCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKL 193
Cdd:cd05509 42 MDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFWKKL 98
|
|
| Bromo_tif1_like |
cd05502 |
Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of ... |
141-196 |
1.21e-05 |
|
Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99934 [Multi-domain] Cd Length: 109 Bit Score: 46.13 E-value: 1.21e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 569007239 141 KMEEKfSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMLLEQKLALL 196
Cdd:cd05502 52 KLQPK-SPQHYSSPEEFVADVRLMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEI 106
|
|
| Bromodomain |
pfam00439 |
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin ... |
137-184 |
1.54e-05 |
|
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 425683 [Multi-domain] Cd Length: 84 Bit Score: 45.00 E-value: 1.54e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 569007239 137 MCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVDHWISKQGQK 184
Cdd:pfam00439 37 MDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGSVIYKAAEK 84
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1472-1828 |
4.78e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 48.37 E-value: 4.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1472 TFSGIGASVPLSSLSVASSPASAGTRPPVLVSGNDTSSRIMPVLSNRLCPSNLGNTVAIS-TVKTGHLASSVLISTTQ-- 1548
Cdd:pfam05109 406 TRTATNATTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGpTVSTADVTSPTPAGTTSga 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1549 ----PTVSPK-----CLTPALQIPVT-VALPTPVTTSPKIINTVPQsatiPGATRPvSLSKRQSQTSLQFQSPGTTTivP 1618
Cdd:pfam05109 486 spvtPSPSPRdngteSKAPDMTSPTSaVTTPTPNATSPTPAVTTPT----PNATSP-TLGKTSPTSAVTTPTPNATS--P 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1619 TNANTNKPPAELSPSAspGKIVNISNVTSMPNQHMSPSLVKST----LGNNSIAGGSAIHTC-SPPSNITSLAGAPfsep 1693
Cdd:pfam05109 559 TPAVTTPTPNATIPTL--GKTSPTSAVTTPTPNATSPTVGETSpqanTTNHTLGGTSSTPVVtSPPKNATSAVTTG---- 632
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1694 ciQQKIVINTSTPLAPGTQIMmngARFIVPPQGLGAGSHV-LLISTNPKYGPPLVlnsgqsiLATPVDNPVQKIiqtSNS 1772
Cdd:pfam05109 633 --QHNITSSSTSSMSLRPSSI---SETLSPSTSDNSTSHMpLLTSAHPTGGENIT-------QVTPASTSTHHV---STS 697
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 569007239 1773 SLSGQPLKPSVRNSPKTVNSLGSPSSLSAVHTPPhiintPAKVCVPPAPPAALTSV 1828
Cdd:pfam05109 698 SPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTP-----PKNATSPQAPSGQKTAV 748
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1443-1712 |
1.14e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.14 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1443 SPNSNSAPASSNIVNHSLPAASESARTANTfSGIGASVPLSSLSVAS------SPASAGTRPPVLVSGNDTSSRIMPVlS 1516
Cdd:pfam05109 441 APNTTTGLPSSTHVPTNLTAPASTGPTVST-ADVTSPTPAGTTSGASpvtpspSPRDNGTESKAPDMTSPTSAVTTPT-P 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1517 NRLCPSNLGNTVAISTVKTGHLASSVLISTTQPTVSPKCLTPALQIPV---------------TVALPTPVTTSPKIINT 1581
Cdd:pfam05109 519 NATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTpnatiptlgktsptsAVTTPTPNATSPTVGET 598
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1582 VPQSATIP-----GATRPVSLSKRQSQTSL------QFQSPGTT-----------TIVPTNANTNKPPAELSPSASPGKI 1639
Cdd:pfam05109 599 SPQANTTNhtlggTSSTPVVTSPPKNATSAvttgqhNITSSSTSsmslrpssiseTLSPSTSDNSTSHMPLLTSAHPTGG 678
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 569007239 1640 VNISNVT--SMPNQHMSPSLVKSTLGNNSIAGGSA-IHTCSPPSNITSLAGAPFSepciqqkiviNTSTPLAPGTQ 1712
Cdd:pfam05109 679 ENITQVTpaSTSTHHVSTSSPAPRPGTTSQASGPGnSSTSTKPGEVNVTKGTPPK----------NATSPQAPSGQ 744
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1440-1662 |
1.74e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.02 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1440 SPISPNSNSAPASSNIVNHSLPAASESARTANTFSGIGASVPLSSLSVASSPASAGTRPPVLVSGNDTSSRIMPVLSNRL 1519
Cdd:pfam17823 122 SPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASS 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1520 CPSNLGNTVAISTVKTGHLASSVLISTTQ-PTVSP---------KCLTPALQIPVTVALPTPVTTSPKIINTVPQSATI- 1588
Cdd:pfam17823 202 APATLTPARGISTAATATGHPAAGTALAAvGNSSPaagtvtaavGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLs 281
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569007239 1589 PGATRPVSLSKRQSQTSLQFQSPGTTTIVptnaNTNKPPAELSPSASPGKivniSNVTSMPNQHMSPSLVKSTL 1662
Cdd:pfam17823 282 PAKHMPSDTMARNPAAPMGAQAQGPIIQV----STDQPVHNTAGEPTPSP----SNTTLEPNTPKSVASTNLAV 347
|
|
| PRK13042 |
PRK13042 |
superantigen-like protein SSL4; Reviewed; |
1527-1632 |
1.84e-03 |
|
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 42.31 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1527 TVAISTVKTGHLASSVLISTTQPTVSpkcltpalQIPVTVALPTPVTTSPKIINTVPQSAtiPGATRPVSLSKRQSQTSL 1606
Cdd:PRK13042 5 TIAKTSLALGLLTTGVITTTTQAANA--------TTPSSTKVEAPQSTPPSTKVEAPQSK--PNATTPPSTKVEAPQQTP 74
|
90 100
....*....|....*....|....*..
gi 569007239 1607 QFQSPGTTTI-VPTNANTNKPPAELSP 1632
Cdd:PRK13042 75 NATTPSSTKVeTPQSPTTKQVPTEINP 101
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
951-1206 |
1.86e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 43.37 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 951 VEKEIAAPQQKGP-----EHCSPGPQTSASCSlvsVPVTSVSTQLPNTVLSKTSTPSSNVSARSQPLSPVASVSNALTSP 1025
Cdd:pfam05109 454 VPTNLTAPASTGPtvstaDVTSPTPAGTTSGA---SPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTP 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1026 VKTSQSEAGKVKSTASSTTLPQPH-TSPTisstvqpllPATTlneSTDPGSSIPCFSQQT----VDSSEAKQELKTVCIR 1100
Cdd:pfam05109 531 TPNATSPTLGKTSPTSAVTTPTPNaTSPT---------PAVT---TPTPNATIPTLGKTSptsaVTTPTPNATSPTVGET 598
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 1101 DSQSILVRTRGGNTGVVKVQTNPEQNSPNSLSsssvftfTPQFQaflVPKSTSCSASSQVAGVTTTSSlPSFSQASTS-V 1179
Cdd:pfam05109 599 SPQANTTNHTLGGTSSTPVVTSPPKNATSAVT-------TGQHN---ITSSSTSSMSLRPSSISETLS-PSTSDNSTShM 667
|
250 260
....*....|....*....|....*..
gi 569007239 1180 SISCGFHPPMGKNLKSTQGQTLSSGYV 1206
Cdd:pfam05109 668 PLLTSAHPTGGENITQVTPASTSTHHV 694
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
601-799 |
2.22e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 601 LDELRELITKIENELKDLENSRKKSGKWYHRRQAVKELHSTlirllnellpwEPKLMKAfqrNRSRLKKDYDDFRRqpdh 680
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL-----------EEKLKKY---NLEELEKKAEEYEK---- 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007239 681 gqfTRELWATDECE-GNPEREAPKAEVSKSVDAA--EPLDTLEKEQEGSDDmKLSEIGFPMARS---------KLLKKEL 748
Cdd:PRK03918 530 ---LKEKLIKLKGEiKSLKKELEKLEELKKKLAEleKKLDELEEELAELLK-ELEELGFESVEEleerlkelePFYNEYL 605
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 569007239 749 PSKDIVKTLPKTLKRQSKQSSYLDDSTKELSpRKKAKLSTNETSVENLEVN 799
Cdd:PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEELA-ETEKRLEELRKELEELEKK 655
|
|
| Bromo_brd1_like |
cd05512 |
Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein ... |
134-175 |
7.31e-03 |
|
Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99944 Cd Length: 98 Bit Score: 37.76 E-value: 7.31e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 569007239 134 SQGMCLLKMEEKFSSGQYRGITEFVADFRLMLETCYRLHGVD 175
Cdd:cd05512 39 KQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80
|
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