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Conserved domains on  [gi|568990475|ref|XP_006520139|]
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sperm-associated antigen 1 isoform X2 [Mus musculus]

Protein Classification

3a0801s09 and RPAP3_C domain-containing protein( domain architecture ID 13518458)

protein containing domains 3a0801s09, PLN03088, and RPAP3_C

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 778-869 5.10e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


:

Pssm-ID: 464012  Cd Length: 91  Bit Score: 91.19  E-value: 5.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  778 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 856
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 568990475  857 FKTMLTLINKGQK 869
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-331 2.42e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.36  E-value: 2.42e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 218 GKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKL 296
Cdd:COG0457   47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 568990475 297 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG0457  127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 202-686 1.42e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 84.27  E-value: 1.42e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  202 AGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK 281
Cdd:TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  282 ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDlaKKTLSEVERDLKN---SEPVSELQTKGKRMviEEVENSGDEGGKG 358
Cdd:TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL--PSVTFVGNYLQSF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  359 SADEREDGGSD------EAAMGNIQKKLMVRRSEGGRRSRRGRTPGPRAEQQGGLRETATAStgdshypeepraadnpsg 432
Cdd:TIGR00990 272 RPKPRPAGLEDsneldeETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA------------------ 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  433 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 512
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSI-ELDP-------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  513 AMAYETLEQYRNAYVDYKTVLQIDCG-----IQLASDS--ANRIARILTELdgSKWRERLPPIPAVPTseplrvwlpaae 585
Cdd:TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDfifshIQLGVTQykEGSIASSMATF--RRCKKNFPEAPDVYN------------ 471

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  586 tpdqdpcpnncmpsitdekmFQAlkeegnQLVKDKN-YKDAISKYNECLKINSKACAIYT------NRALCYLKLGQ-FE 657
Cdd:TIGR00990 472 --------------------YYG------ELLLDQNkFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWKQdFI 525

                         490       500       510
                  ....*....|....*....|....*....|.
gi 568990475  658 EAKLDCEQALQIDGENVKASHRLA--LAQKG 686
Cdd:TIGR00990 526 EAENLCEKALIIDPECDIAVATMAqlLLQQG 556
PLN03088 super family cl33632
SGT1, suppressor of G2 allele of SKP1; Provisional
 619-795 8.24e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


The actual alignment was detected with superfamily member PLN03088:

Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.93  E-value: 8.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 619 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 698
Cdd:PLN03088  15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 699 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 778
Cdd:PLN03088  85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                        170       180
                 ....*....|....*....|.
gi 568990475 779 TNAYEFGQ----VLSTISARK 795
Cdd:PLN03088 156 KYRHEFYQkpeeVVVTVFAKG 176
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 778-869 5.10e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 91.19  E-value: 5.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  778 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 856
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 568990475  857 FKTMLTLINKGQK 869
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-331 2.42e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.36  E-value: 2.42e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 218 GKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKL 296
Cdd:COG0457   47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 568990475 297 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG0457  127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 202-686 1.42e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 84.27  E-value: 1.42e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  202 AGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK 281
Cdd:TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  282 ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDlaKKTLSEVERDLKN---SEPVSELQTKGKRMviEEVENSGDEGGKG 358
Cdd:TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL--PSVTFVGNYLQSF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  359 SADEREDGGSD------EAAMGNIQKKLMVRRSEGGRRSRRGRTPGPRAEQQGGLRETATAStgdshypeepraadnpsg 432
Cdd:TIGR00990 272 RPKPRPAGLEDsneldeETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA------------------ 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  433 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 512
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSI-ELDP-------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  513 AMAYETLEQYRNAYVDYKTVLQIDCG-----IQLASDS--ANRIARILTELdgSKWRERLPPIPAVPTseplrvwlpaae 585
Cdd:TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDfifshIQLGVTQykEGSIASSMATF--RRCKKNFPEAPDVYN------------ 471

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  586 tpdqdpcpnncmpsitdekmFQAlkeegnQLVKDKN-YKDAISKYNECLKINSKACAIYT------NRALCYLKLGQ-FE 657
Cdd:TIGR00990 472 --------------------YYG------ELLLDQNkFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWKQdFI 525

                         490       500       510
                  ....*....|....*....|....*....|.
gi 568990475  658 EAKLDCEQALQIDGENVKASHRLA--LAQKG 686
Cdd:TIGR00990 526 EAENLCEKALIIDPECDIAVATMAqlLLQQG 556
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
475-692 1.61e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.19  E-value: 1.61e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 475 YSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilt 554
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD------------------ 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 555 eldgskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLK 634
Cdd:COG0457   73 --------------------------------------PDD----------AEALNNLGLALQALGRYEEALEDYDKALE 104

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 568990475 635 INSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 692
Cdd:COG0457  105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 431-591 2.59e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 66.35  E-value: 2.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 431 SGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 510
Cdd:PLN03088   3 KDLEDKAKEAFVDDDFALAVDLYTQAID-LDPN---NAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 511 RRAMAYETLEQYRNAyvdyKTVLQIdcGIQLASDSAnRIARILTELDGSKWRERLPPIPAVPTSEPLRVWLPAAETPDQD 590
Cdd:PLN03088  75 RKGTACMKLEEYQTA----KAALEK--GASLAPGDS-RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                 .
gi 568990475 591 P 591
Cdd:PLN03088 148 P 148
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 219-339 5.03e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 65.19  E-value: 5.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 219 KGNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:PLN03088   8 KAKEAFVDDDFALAVDLYTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 568990475 298 EAVDDLRKVLQVEPDNDLAKKTLSEVerDLKNSEPVSELQTK 339
Cdd:PLN03088  88 TAKAALEKGASLAPGDSRFTKLIKEC--DEKIAEEEKDLVQP 127
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 220-331 1.50e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.01  E-value: 1.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  220 GNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEA 299
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789

                          90       100       110
                  ....*....|....*....|....*....|..
gi 568990475  300 VDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:TIGR02917 790 IKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR 821
TPR_1 pfam00515
Tetratricopeptide repeat;
246-279 2.56e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.56e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 568990475  246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 279
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
642-673 2.66e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.66e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 568990475  642 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 642-673 8.23e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 8.23e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568990475   642 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 246-279 8.90e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 8.90e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568990475   246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 279
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 619-795 8.24e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.93  E-value: 8.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 619 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 698
Cdd:PLN03088  15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 699 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 778
Cdd:PLN03088  85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                        170       180
                 ....*....|....*....|.
gi 568990475 779 TNAYEFGQ----VLSTISARK 795
Cdd:PLN03088 156 KYRHEFYQkpeeVVVTVFAKG 176
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 253-317 2.80e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 2.80e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568990475 253 AQAEIKLQR--WSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAK 317
Cdd:cd24142    5 EKAEELLDQgnFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 778-869 5.10e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 91.19  E-value: 5.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  778 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 856
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 568990475  857 FKTMLTLINKGQK 869
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-331 2.42e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.36  E-value: 2.42e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 218 GKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKL 296
Cdd:COG0457   47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 568990475 297 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG0457  127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
227-331 3.25e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.98  E-value: 3.25e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 227 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG0457   22 GRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101

                         90       100
                 ....*....|....*....|....*.
gi 568990475 306 VLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG0457  102 ALELDPDDAEALYNLGLALLELGRYD 127
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
195-338 5.37e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 81.11  E-value: 5.37e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 195 IETKIETAGLTEKEKSFLANRekgkGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKAL 273
Cdd:COG4785   59 AAERIDRALALPDLAQLYYER----GVAYDSLGDYDLAIADFDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRAL 134

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568990475 274 ELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSELQT 338
Cdd:COG4785  135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLE 199
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 202-686 1.42e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 84.27  E-value: 1.42e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  202 AGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK 281
Cdd:TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  282 ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDlaKKTLSEVERDLKN---SEPVSELQTKGKRMviEEVENSGDEGGKG 358
Cdd:TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKfaeSKAKEILETKPENL--PSVTFVGNYLQSF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  359 SADEREDGGSD------EAAMGNIQKKLMVRRSEGGRRSRRGRTPGPRAEQQGGLRETATAStgdshypeepraadnpsg 432
Cdd:TIGR00990 272 RPKPRPAGLEDsneldeETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA------------------ 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  433 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 512
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSI-ELDP-------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  513 AMAYETLEQYRNAYVDYKTVLQIDCG-----IQLASDS--ANRIARILTELdgSKWRERLPPIPAVPTseplrvwlpaae 585
Cdd:TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDfifshIQLGVTQykEGSIASSMATF--RRCKKNFPEAPDVYN------------ 471

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  586 tpdqdpcpnncmpsitdekmFQAlkeegnQLVKDKN-YKDAISKYNECLKINSKACAIYT------NRALCYLKLGQ-FE 657
Cdd:TIGR00990 472 --------------------YYG------ELLLDQNkFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWKQdFI 525

                         490       500       510
                  ....*....|....*....|....*....|.
gi 568990475  658 EAKLDCEQALQIDGENVKASHRLA--LAQKG 686
Cdd:TIGR00990 526 EAENLCEKALIIDPECDIAVATMAqlLLQQG 556
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 220-316 3.65e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.65  E-value: 3.65e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 220 GNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 298
Cdd:COG3914  119 GNLLLALGRLEEALAALRRALALNPdFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                         90
                 ....*....|....*...
gi 568990475 299 AVDDLRKVLQVEPDNDLA 316
Cdd:COG3914  199 AIAAYRRALELDPDNADA 216
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 211-313 4.45e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.65  E-value: 4.45e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 211 FLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATT 289
Cdd:COG3914   76 LLAALLELAALLLQALGRYEEALALYRRALALNPDnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155

                         90       100
                 ....*....|....*....|....
gi 568990475 290 YKHQNKLQEAVDDLRKVLQVEPDN 313
Cdd:COG3914  156 LRRLGRLEEAIAALRRALELDPDN 179
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
475-692 1.61e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.19  E-value: 1.61e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 475 YSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilt 554
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD------------------ 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 555 eldgskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLK 634
Cdd:COG0457   73 --------------------------------------PDD----------AEALNNLGLALQALGRYEEALEDYDKALE 104

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 568990475 635 INSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 692
Cdd:COG0457  105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 220-314 2.70e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 67.72  E-value: 2.70e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 220 GNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 298
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPdNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                         90
                 ....*....|....*.
gi 568990475 299 AVDDLRKVLQVEPDND 314
Cdd:COG4235  104 AIAAWQKLLALLPADA 119
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
218-316 3.77e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 69.56  E-value: 3.77e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 218 GKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:COG4785   45 ALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYD 124

                         90
                 ....*....|....*....
gi 568990475 298 EAVDDLRKVLQVEPDNDLA 316
Cdd:COG4785  125 AALEDFDRALELDPDYAYA 143
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 213-331 4.53e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.14  E-value: 4.53e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 213 ANREKGKGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYK 291
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 568990475 292 HQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
246-331 8.57e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.27  E-value: 8.57e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 325
Cdd:COG0457    8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87


                 ....*.
gi 568990475 326 DLKNSE 331
Cdd:COG0457   88 ALGRYE 93
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 219-313 9.27e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.37  E-value: 9.27e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 219 KGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:COG4783   44 LGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123

                         90
                 ....*....|....*.
gi 568990475 298 EAVDDLRKVLQVEPDN 313
Cdd:COG4783  124 EAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
227-316 1.08e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.88  E-value: 1.08e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 227 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG0457   90 GRYEEALEDYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                         90
                 ....*....|.
gi 568990475 306 VLQVEPDNDLA 316
Cdd:COG0457  170 LEAAALAALLA 180
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
420-570 1.37e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.02  E-value: 1.37e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 420 YPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRAL 499
Cdd:COG4785   63 IDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE-LDP-------DLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568990475 500 ELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCgiqlaSDSANRIARILTE--LDGSKWRERLPPIPA 570
Cdd:COG4785  135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP-----NDPERALWLYLAErkLDPEKALALLLEDWA 202
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
227-312 1.57e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.04  E-value: 1.57e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 227 GDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEdCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG3063    6 GDLEEAEEYYEKALELDPdNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                 ....*..
gi 568990475 306 VLQVEPD 312
Cdd:COG3063   85 ALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 223-311 2.21e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 65.75  E-value: 2.21e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 223 AFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVD 301
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143

                         90
                 ....*....|
gi 568990475 302 DLRKVLQVEP 311
Cdd:COG5010  144 ALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 220-331 3.54e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.83  E-value: 3.54e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 220 GNEAFYSGDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 298
Cdd:COG2956  151 AELYLEQGDYDEAIEALEKALKLDPDCArALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230

                         90       100       110
                 ....*....|....*....|....*....|...
gi 568990475 299 AVDDLRKVLQVEPDNDlAKKTLSEVERDLKNSE 331
Cdd:COG2956  231 ALELLRKALELDPSDD-LLLALADLLERKEGLE 262
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
428-688 1.69e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 1.69e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 428 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVK 507
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-LDP-------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 508 PLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldgskwrerlppipavptseplrvwlpaaetp 587
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKALELD--------------------------------------------------- 106

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 588 dqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQAL 667
Cdd:COG0457  107 -----PDD----------AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171

                        250       260
                 ....*....|....*....|.
gi 568990475 668 QIDGENVKASHRLALAQKGLE 688
Cdd:COG0457  172 AAALAALLAAALGEAALALAA 192
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 431-591 2.59e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 66.35  E-value: 2.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 431 SGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 510
Cdd:PLN03088   3 KDLEDKAKEAFVDDDFALAVDLYTQAID-LDPN---NAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 511 RRAMAYETLEQYRNAyvdyKTVLQIdcGIQLASDSAnRIARILTELDGSKWRERLPPIPAVPTSEPLRVWLPAAETPDQD 590
Cdd:PLN03088  75 RKGTACMKLEEYQTA----KAALEK--GASLAPGDS-RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                 .
gi 568990475 591 P 591
Cdd:PLN03088 148 P 148
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 226-331 2.60e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.14  E-value: 2.60e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 226 SGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLR 304
Cdd:COG2956  123 EGDWEKAIEVLERLLKLGPEnAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202

                         90       100
                 ....*....|....*....|....*..
gi 568990475 305 KVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG2956  203 RALEQDPDYLPALPRLAELYEKLGDPE 229
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 219-339 5.03e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 65.19  E-value: 5.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 219 KGNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:PLN03088   8 KAKEAFVDDDFALAVDLYTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 568990475 298 EAVDDLRKVLQVEPDNDLAKKTLSEVerDLKNSEPVSELQTK 339
Cdd:PLN03088  88 TAKAALEKGASLAPGDSRFTKLIKEC--DEKIAEEEKDLVQP 127
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
602-713 2.05e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.95  E-value: 2.05e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 602 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 681
Cdd:COG0457   38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                         90       100       110
                 ....*....|....*....|....*....|...
gi 568990475 682 LAQKGLENCRESGVDPSQVL-LSPDSSEAARHL 713
Cdd:COG0457  118 LALLELGRYDEAIEAYERALeLDPDDADALYNL 150
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 231-313 3.39e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.86  E-value: 3.39e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 231 EAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQV 309
Cdd:COG4235    1 EAIARLRQALAANPNdAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                 ....
gi 568990475 310 EPDN 313
Cdd:COG4235   81 DPDN 84
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
602-713 1.42e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.64  E-value: 1.42e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 602 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 681
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                         90       100       110
                 ....*....|....*....|....*....|...
gi 568990475 682 LAQKGLENCRESGVDPSQVL-LSPDSSEAARHL 713
Cdd:COG0457   84 LALQALGRYEEALEDYDKALeLDPDDAEALYNL 116
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 227-331 1.97e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.74  E-value: 1.97e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 227 GDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG2956   90 GLLDRAEELLEKLLELDPDDAeALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                         90       100
                 ....*....|....*....|....*.
gi 568990475 306 VLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG2956  170 ALKLDPDCARALLLLAELYLEQGDYE 195
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 227-331 5.50e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.20  E-value: 5.50e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 227 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG2956   56 GEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER 135

                         90       100
                 ....*....|....*....|....*.
gi 568990475 306 VLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG2956  136 LLKLGPENAHAYCELAELYLEQGDYD 161
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 559-696 5.68e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 59.61  E-value: 5.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  559 SKWRERLPPIPAVPTSEPlrvwlpAAETPDQDPCPNNCMPSITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSK 638
Cdd:TIGR00990  86 GKTEEKKSTAPKNAPVEP------ADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD 159

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 568990475  639 AcAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVD 696
Cdd:TIGR00990 160 P-VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 616-692 9.24e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.35  E-value: 9.24e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568990475 616 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 692
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
607-685 1.56e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.08  E-value: 1.56e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568990475 607 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQK 685
Cdd:COG4785  108 EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 246-329 1.56e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.47  E-value: 1.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 325
Cdd:COG3914   78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157


                 ....
gi 568990475 326 DLKN 329
Cdd:COG3914  158 RLGR 161
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 431-689 2.03e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.66  E-value: 2.03e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 431 SGLKRRGNELFRGGQFAEAAAQYsVAIAQLEPtgsANADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 510
Cdd:COG2956    9 LGWYFKGLNYLLNGQPDKAIDLL-EEALELDP---ETVE----AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 511 RRAMAYETLEQYRNAYVDYKTVLQIDcgiQLASDSANRIARILTELdgSKWRErlppipAVPTSEPLrvwlpAAETPDQD 590
Cdd:COG2956   81 ELAQDYLKAGLLDRAEELLEKLLELD---PDDAEALRLLAEIYEQE--GDWEK------AIEVLERL-----LKLGPENA 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 591 pcpnncmpsitdekmfQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 670
Cdd:COG2956  145 ----------------HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208

                        250
                 ....*....|....*....
gi 568990475 671 GENVKASHRLALAQKGLEN 689
Cdd:COG2956  209 PDYLPALPRLAELYEKLGD 227
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
598-683 2.65e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.31  E-value: 2.65e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 598 PSITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKAS 677
Cdd:COG4785   65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144


                 ....*.
gi 568990475 678 HRLALA 683
Cdd:COG4785  145 LNRGIA 150
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 607-713 3.18e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 3.18e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 607 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA--- 683
Cdd:COG3914   79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAlrr 158

                         90       100       110
                 ....*....|....*....|....*....|....
gi 568990475 684 ----QKGLENCRESgvdpsqVLLSPDSSEAARHL 713
Cdd:COG3914  159 lgrlEEAIAALRRA------LELDPDNAEALNNL 186
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 222-325 4.28e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.30  E-value: 4.28e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 222 EAFYSGDYEEAVMYYTRSLSALP----TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK---ALLRRATTYKHQN 294
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPnsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 568990475 295 KLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 325
Cdd:COG1729   82 DYDKARATLEELIKKYPDSEAAKEARARLAR 112
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 400-685 4.60e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.93  E-value: 4.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 400 RAEQQGGLRETATASTGDSHYPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIA-QLEPTGSANADELSILYSNR 478
Cdd:COG3914    5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAaGEAAAAAAALLLLAALLELA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 479 AACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldg 558
Cdd:COG3914   85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---------------------- 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 559 skwrerlppipavptseplrvwlpaaetPDqdpcpnncmpsitdekMFQALKEEGNQLVKDKNYKDAISKYNECLKINSK 638
Cdd:COG3914  143 ----------------------------PD----------------FAEAYLNLGEALRRLGRLEEAIAALRRALELDPD 178

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 568990475 639 ACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKA-SHRLALAQK 685
Cdd:COG3914  179 NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAhSNLLFALRQ 226
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 228-331 7.24e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.66  E-value: 7.24e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 228 DYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVL 307
Cdd:COG5010   36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKAL 115

                         90       100
                 ....*....|....*....|....
gi 568990475 308 QVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG5010  116 ALSPDNPNAYSNLAALLLSLGQDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 428-536 1.78e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.77  E-value: 1.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 428 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIaQLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVK 507
Cdd:COG4235   15 NDAEGWLLLGRAYLRLGRYDEALAAYEKAL-RLDPD---NAD----ALLDLAEALLAAGDTEEAEELLERALALDPDNPE 86

                         90       100
                 ....*....|....*....|....*....
gi 568990475 508 PLLRRAMAYETLEQYRNAYVDYKTVLQID 536
Cdd:COG4235   87 ALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 211-560 2.02e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.58  E-value: 2.02e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 211 FLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATT 289
Cdd:COG2956    6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVeAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQD 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 290 YKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNsepvselqtkgkrmvieevensgdeggkgsaderedggSD 369
Cdd:COG2956   86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGD--------------------------------------WE 127

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 370 EAAmgNIQKKLmvrrseggrrsrrgrtpgpraeqqgglretATASTGDSHYpeepraadnpsgLKRRGNELFRGGQFAEA 449
Cdd:COG2956  128 KAI--EVLERL------------------------------LKLGPENAHA------------YCELAELYLEQGDYDEA 163

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 450 AAQYSVAIaQLEPtGSANAdelsilYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDY 529
Cdd:COG2956  164 IEALEKAL-KLDP-DCARA------LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELL 235

                        330       340       350
                 ....*....|....*....|....*....|.
gi 568990475 530 KTVLQIDCGiqlaSDSANRIARILTELDGSK 560
Cdd:COG2956  236 RKALELDPS----DDLLLALADLLERKEGLE 262
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
255-331 4.25e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.63  E-value: 4.25e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568990475 255 AEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVdDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYD 76
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 602-687 5.55e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.46  E-value: 5.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 602 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 681
Cdd:COG3914  108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187


                 ....*.
gi 568990475 682 LAQKGL 687
Cdd:COG3914  188 NALQDL 193
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 607-692 9.07e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.03  E-value: 9.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 607 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKG 686
Cdd:COG4783   39 EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118


                 ....*.
gi 568990475 687 LENCRE 692
Cdd:COG4783  119 LGRPDE 124
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
616-683 1.45e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 1.45e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568990475 616 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAkLDCEQALQIDGENVKASHRLALA 683
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAEL 68
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 220-331 1.50e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.01  E-value: 1.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  220 GNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEA 299
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789

                          90       100       110
                  ....*....|....*....|....*....|..
gi 568990475  300 VDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:TIGR02917 790 IKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR 821
TPR_1 pfam00515
Tetratricopeptide repeat;
246-279 2.56e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.56e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 568990475  246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 279
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
642-673 2.66e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 2.66e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 568990475  642 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 607-683 3.45e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 3.45e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568990475 607 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 683
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 398-536 4.92e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.38  E-value: 4.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 398 GPRAEQQGGLRETATASTGDSHYPEEPRAADNPSGL----KRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSI 473
Cdd:COG3914   42 GLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLaallELAALLLQALGRYEEALALYRRALA-LNP-------DNAE 113

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568990475 474 LYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQID 536
Cdd:COG3914  114 ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 265-336 6.06e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 6.06e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568990475 265 ALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSEL 336
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL 73
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 642-673 8.23e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 8.23e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568990475   642 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 246-279 8.90e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 8.90e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568990475   246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 279
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 425-688 1.11e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 1.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 425 RAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsaNADELSILYsNRAACYLKEGNCRDCIQDCNRALELHPF 504
Cdd:COG2956   71 RDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL-------DPDDAEALR-LLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 505 SVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldgskwrerlppipavptseplrvwlpaa 584
Cdd:COG2956  143 NAHAYCELAELYLEQGDYDEAIEALEKALKLD------------------------------------------------ 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 585 etpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCE 664
Cdd:COG2956  175 --------PDC----------ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR 236

                        250       260
                 ....*....|....*....|....*.
gi 568990475 665 QALQIDGEN--VKASHRLALAQKGLE 688
Cdd:COG2956  237 KALELDPSDdlLLALADLLERKEGLE 262
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 226-660 1.13e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 1.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  226 SGDYEEAVMYYTRSLSALPTAIA-YNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLR 304
Cdd:TIGR02917 546 TGNEEEAVAWLEKAAELNPQEIEpALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  305 KVLQVEPDNDLAKKTLSEVERDLKNSEpvselqtKGKRMVIEEVENSGDeggkgsaderedggSDEAAMGNIQKKLmvrr 384
Cdd:TIGR02917 626 KLLALQPDSALALLLLADAYAVMKNYA-------KAITSLKRALELKPD--------------NTEAQIGLAQLLL---- 680

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  385 seggrrsrrgrtpgpraeqqggLRETATASTGDSHYPEEPRAADnPSGLKRRGNELFRGGQFAEAAAQYSVAIaQLEPTg 464
Cdd:TIGR02917 681 ----------------------AAKRTESAKKIAKSLQKQHPKA-ALGFELEGDLYLRQKDYPAAIQAYRKAL-KRAPS- 735

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  465 SANADELsilysnrAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLqidcgiQLASD 544
Cdd:TIGR02917 736 SQNAIKL-------HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV------KKAPD 802

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  545 SA---NRIARILTELDGSKwrerlppipavptsePLRVWLPAAETPDQDPcpnncmpsitdekmfQALKEEGNQLVKDKN 621
Cdd:TIGR02917 803 NAvvlNNLAWLYLELKDPR---------------ALEYAERALKLAPNIP---------------AILDTLGWLLVEKGE 852

                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 568990475  622 YKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAK 660
Cdd:TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
273-565 1.25e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 1.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 273 LELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNsepvselqtkgkrmvieevensg 352
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR----------------------- 57

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 353 deggkgsaderedggsDEAAMGNIQKKLMVrrseggrrsrrgrtpgpraeqqgglretatastgdshypeeprAADNPSG 432
Cdd:COG0457   58 ----------------YEEALADYEQALEL-------------------------------------------DPDDAEA 78

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 433 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 512
Cdd:COG0457   79 LNNLGLALQALGRYEEALEDYDKAL-ELDP-------DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568990475 513 AMAYETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARILTELDGSKWRERL 565
Cdd:COG0457  151 GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 428-536 1.98e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 428 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsaNADELSILYsNRAACYLKEGNCRDCIQDCNRALELHPFSVK 507
Cdd:COG4783   36 DNPEAFALLGEILLQLGDLDEAIVLLHEALEL-------DPDEPEARL-NLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                         90       100
                 ....*....|....*....|....*....
gi 568990475 508 PLLRRAMAYETLEQYRNAYVDYKTVLQID 536
Cdd:COG4783  108 AYLRLARAYRALGRPDEAIAALEKALELD 136
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 227-310 2.54e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 2.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 227 GDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:COG3914  160 GRLEEAIAALRRALELDPDnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL 239


                 ....*
gi 568990475 306 VLQVE 310
Cdd:COG3914  240 LAALA 244
TPR_12 pfam13424
Tetratricopeptide repeat;
245-309 2.86e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.14  E-value: 2.86e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568990475  245 TAIAYNNRAQAEIKLQRWSSALEDCEKALEL--------DPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQV 309
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 220-313 3.58e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.77  E-value: 3.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  220 GNEAFYSGDYEEAVMYYTRSLSALPTAiAYNNRAQAEIKLQ--RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPRS-LYAKLGLAQLALAenRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIE 210

                          90
                  ....*....|....*.
gi 568990475  298 EAVDDLRKVLQVEPDN 313
Cdd:TIGR02917 211 LALAAYRKAIALRPNN 226
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 613-683 3.71e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 3.71e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568990475 613 GNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 683
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
602-670 4.09e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 4.09e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568990475 602 DEKMFQALKEEGNQLVKDKNYKDAIsKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 670
Cdd:COG3063   22 DPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 440-536 4.81e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 4.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 440 LFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETL 519
Cdd:COG5010   64 YNKLGDFEESLALLEQAL-QLDP-------NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135

                         90
                 ....*....|....*..
gi 568990475 520 EQYRNAYVDYKTVLQID 536
Cdd:COG5010  136 GQDDEAKAALQRALGTS 152
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
633-709 6.31e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.38  E-value: 6.31e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568990475 633 LKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVDPSQVL-LSPDSSEA 709
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALeLDPDDAEA 78
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 619-795 8.24e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.93  E-value: 8.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 619 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 698
Cdd:PLN03088  15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 699 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 778
Cdd:PLN03088  85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                        170       180
                 ....*....|....*....|.
gi 568990475 779 TNAYEFGQ----VLSTISARK 795
Cdd:PLN03088 156 KYRHEFYQkpeeVVVTVFAKG 176
TPR_17 pfam13431
Tetratricopeptide repeat;
269-300 1.06e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 40.22  E-value: 1.06e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 568990475  269 CEKALELDPGNVKALLRRATTYKHQNKLQEAV 300
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
440-536 1.17e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 440 LFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQdCNRALELHPFSVKPLLRRAMAYETL 519
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALE-LDP-------DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72

                         90
                 ....*....|....*..
gi 568990475 520 EQYRNAYVDYKTVLQID 536
Cdd:COG3063   73 GDYDEALAYLERALELD 89
TPR_1 pfam00515
Tetratricopeptide repeat;
280-313 1.52e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.71  E-value: 1.52e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 568990475  280 VKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 313
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 439-552 1.59e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 1.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 439 ELFRGGQFAEAAAQYSvAIAQLEPTGSANADelsILYsNRAACYLKEGNCRDCIQDCNRALELHPFSVK---PLLRRAMA 515
Cdd:COG1729    2 ALLKAGDYDEAIAAFK-AFLKRYPNSPLAPD---ALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLS 76

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 568990475 516 YETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARI 552
Cdd:COG1729   77 YLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 220-329 2.58e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.69  E-value: 2.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  220 GNEAFYSGDYEEAVMYYTRSLSALPTA-IAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQE 298
Cdd:TIGR02917 234 ATILIEAGEFEEAEKHADALLKKAPNSpLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQ 313

                          90       100       110
                  ....*....|....*....|....*....|.
gi 568990475  299 AVDDLRKVLQVEPDNDLAKKTLSEVERDLKN 329
Cdd:TIGR02917 314 AYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 219-336 2.65e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 44.13  E-value: 2.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 219 KGNEAFYSGDYEEAVMYYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKA-LLRRATTYKHQNKL 296
Cdd:COG3071   22 EGLLALAEGRYARAEKLLSKAAEHSEApLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQA 101

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 568990475 297 QEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSEL 336
Cdd:COG3071  102 EQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLEL 141
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 478-673 2.74e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 2.74e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 478 RAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteld 557
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD--------------------- 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 558 gskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINS 637
Cdd:COG4783   69 -----------------------------------PDE----------PEARLNLGLALLKAGDYDEALALLEKALKLDP 103

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 568990475 638 KACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:COG4783  104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 253-317 2.80e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 2.80e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568990475 253 AQAEIKLQR--WSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAK 317
Cdd:cd24142    5 EKAEELLDQgnFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 246-278 2.92e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 38.66  E-value: 2.92e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 568990475  246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPG 278
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 242-536 3.02e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 3.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 242 ALPTAIAYNNRAQAEIKLQ--RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKT 319
Cdd:COG2956    2 LLPVAAALGWYFKGLNYLLngQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 320 LSEVERDLKNSEpvselqtkgkrmvieevensgdeggkgsaderedggsdeaamgniqkklmvrrseggrrsrrgrtpgp 399
Cdd:COG2956   82 LAQDYLKAGLLD-------------------------------------------------------------------- 93

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 400 RAEQqggLRETATAStgdshypeeprAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsanADELSILYSNRA 479
Cdd:COG2956   94 RAEE---LLEKLLEL-----------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELA 151

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 568990475 480 ACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQID 536
Cdd:COG2956  152 ELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 475-503 4.06e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 4.06e-04
                           10        20
                   ....*....|....*....|....*....
gi 568990475   475 YSNRAACYLKEGNCRDCIQDCNRALELHP 503
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 602-670 4.14e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 4.14e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568990475 602 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 670
Cdd:COG5010   84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 219-279 4.18e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.63  E-value: 4.18e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568990475  219 KGNEAFYSGDYEEAVMYYTRSLSALP----TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 279
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFPespdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 280-313 6.63e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 6.63e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568990475   280 VKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 313
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 420-536 9.99e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 9.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 420 YPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQLEPTGSANADELSILYSNRAACYLKEGNCRDCIQDCNRAL 499
Cdd:COG5010    2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 568990475 500 ELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQID 536
Cdd:COG5010   82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 435-557 1.17e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.18  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 435 RRGNELFRGGQFAEAAAQYSVAIaQLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAM 514
Cdd:COG4783    9 ALAQALLLAGDYDEAEALLEKAL-ELDPD---NPE----AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 568990475 515 AYETLEQYRNAYVDYKTVLQIDcgiQLASDSANRIARILTELD 557
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLD---PEHPEAYLRLARAYRALG 120
TPR_19 pfam14559
Tetratricopeptide repeat;
261-318 1.36e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.95  E-value: 1.36e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 568990475  261 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKK 318
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 642-670 1.38e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.12  E-value: 1.38e-03
                          10        20
                  ....*....|....*....|....*....
gi 568990475  642 IYTNRALCYLKLGQFEEAKLDCEQALQID 670
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELD 31
TPR_8 pfam13181
Tetratricopeptide repeat;
642-670 2.07e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.61  E-value: 2.07e-03
                          10        20
                  ....*....|....*....|....*....
gi 568990475  642 IYTNRALCYLKLGQFEEAKLDCEQALQID 670
Cdd:pfam13181   3 AYYNLGLIYLKLGDYEEAKEYYEKALELD 31
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 224-287 4.42e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 4.42e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568990475 224 FYSGDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRA 287
Cdd:COG4235   62 LAAGDTEEAEELLERALALDPDNPeALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 637-683 4.47e-03

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 39.63  E-value: 4.47e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 568990475  637 SKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 683
Cdd:TIGR02521  28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALY 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 227-316 5.36e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 5.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  227 GDYEEAVMYYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRK 305
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVdALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

                          90
                  ....*....|.
gi 568990475  306 VLQVEPDNDLA 316
Cdd:TIGR02917 253 LLKKAPNSPLA 263
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 246-339 5.55e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 5.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 325
Cdd:TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544

                          90
                  ....*....|....
gi 568990475  326 DLKNSEPVSELQTK 339
Cdd:TIGR02917 545 RTGNEEEAVAWLEK 558
TPR_1 pfam00515
Tetratricopeptide repeat;
475-503 5.71e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 5.71e-03
                          10        20
                  ....*....|....*....|....*....
gi 568990475  475 YSNRAACYLKEGNCRDCIQDCNRALELHP 503
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNP 32
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 620-673 6.84e-03

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 37.66  E-value: 6.84e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 568990475  620 KNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 673
Cdd:TIGR02552  65 KEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118
TPR_9 pfam13371
Tetratricopeptide repeat;
257-316 7.08e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 36.04  E-value: 7.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  257 IKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLA 316
Cdd:pfam13371   6 LREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
TPR_12 pfam13424
Tetratricopeptide repeat;
224-275 8.38e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.21  E-value: 8.38e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568990475  224 FYSGDYEEAVMYYTRSLSA---------LPTAIAYNNRAQAEIKLQRWSSALEDCEKALEL 275
Cdd:pfam13424  14 RRLGRYDEALELLEKALEIarrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 219-331 9.40e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 9.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475  219 KGNEAFYSGDYEEAVMYYTRSLSALPTAIAYN-NRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQ 297
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLlALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278

                          90       100       110
                  ....*....|....*....|....*....|....
gi 568990475  298 EAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 331
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
220-330 9.58e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 9.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990475 220 GNEAFYSGDYEEAVMYYTRSLsalpTAIAYNN------RAQAEIKLQRWSSALEDCEKALELDPG--NVKALLRRATTYK 291
Cdd:COG4700   96 ADALLELGRYDEAIELYEEAL----TGIFADDphillgLAQALFELGRYAEALETLEKLIAKNPDfkSSDAHLLYARALE 171

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 568990475 292 HQNKLQEAVDDLRKVLQVEP----------------DNDLAKKTLSEVERDLKNS 330
Cdd:COG4700  172 ALGDLEAAEAELEALARRYSgpearyryakflarqgRTAEAKELLEEILDEAKHM 226
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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