|
Name |
Accession |
Description |
Interval |
E-value |
| CENP-F_N |
pfam10481 |
Cenp-F N-terminal domain; Mitosin or centromere-associated protein-F (Cenp-F) is found bound ... |
1-228 |
2.66e-93 |
|
Cenp-F N-terminal domain; Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal par to f the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein.
Pssm-ID: 463106 [Multi-domain] Cd Length: 304 Bit Score: 305.60 E-value: 2.66e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1 MEICEHLEKSRQKLSHELQVKESQVNLQESQLSSCKKQIEKLEQELKRCKSEFERSQQVAQSADVSLNPCSTPQKLFATP 80
Cdd:pfam10481 73 MESCDNLEKSRQKISHDLQVKESQVNFLEGQLNSSKKQIEKLEQELKRYKSELERSQQALLAGDVSLQPCSTPQKSFATP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 81 LTPS-----STYEDLKEKYNKEVEERKRLEEEVKALHAKKVSLPVSQATMNHRDIARHQASSSVFPWQQENTPSRLSSDA 155
Cdd:pfam10481 153 LTPSqrhndSKYEELQEKYNKEVEERKRLEAELKVLQVKKTNQTLPQSTVSHRDIARHQASSSVFPWQQEKTPSRQSSDA 232
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568911612 156 LKTPLRRDGSAAHFLGE-EVSPNKSSMKTgrGDCSSLPGEPHSAQLLHQAKAQNQDLKSKMTELELRLQGQEKE 228
Cdd:pfam10481 233 QETPLKRGFTASHFLWEhEETPSKRSQRS--SSNSSLQSNSSSSQLMDQLKAQNQELRSRVSELELRLQAQEKD 304
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
2241-2377 |
9.94e-39 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 142.05 E-value: 9.94e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2241 DEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKN---MIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRS 2317
Cdd:pfam10473 1 DEKKQLHVLEKLKESERKADSLKDKVENLERELEMSEENqelAILEAENSKAEVETLKAEIEEMAQNLRDLELDLVTLRS 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2318 ENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNE 2377
Cdd:pfam10473 81 EKENLTKELQKKQERVSELESLNSSLENLLEEKEQEKVQMKEESKTAVEMLQTQLKELNE 140
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
2059-2198 |
1.44e-33 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 127.41 E-value: 1.44e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2059 DEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRT 2138
Cdd:pfam10473 1 DEKKQLHVLEKLKESERKADSLKDKVENLERELEMSEENQELAILEAENSKAEVETLKAEIEEMAQNLRDLELDLVTLRS 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2139 ERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKELRE 2198
Cdd:pfam10473 81 EKENLTKELQKKQERVSELESLNSSLENLLEEKEQEKVQMKEESKTAVEMLQTQLKELNE 140
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1887-2674 |
3.76e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 102.06 E-value: 3.76e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1887 ERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQtlsfnvgELTKDKAHLQEQLQ 1966
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS-------RLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1967 NLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLR 2046
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2047 RGIEKLSVRIEadekkhlSAVAKLKESQRESDSLKDTVETlerelerseENQELAILDSENLKAEVETLKAQKDEMTKSL 2126
Cdd:TIGR02168 393 LQIASLNNEIE-------RLEARLERLEDRRERLQQEIEE---------LLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2127 RIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQarvqmEEDSKSAMLMLQMQLKELREEVAALCND 2206
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG-----FSEGVKALLKNQSGLSGILGVLSELISV 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2207 QETLkaqEQSLdqpgEEVhhLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEK 2286
Cdd:TIGR02168 532 DEGY---EAAI----EAA--LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2287 SKAEIQTLKSEIQRMAQNLqdLQLELISTRSENE-NLMKELKKEQERVS-DLETINSSIENLLKDKEQEKVQMKEEAKIt 2364
Cdd:TIGR02168 603 VAKDLVKFDPKLRKALSYL--LGGVLVVDDLDNAlELAKKLRPGYRIVTlDGDLVRPGGVITGGSAKTNSSILERRREI- 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2365 vEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEK 2444
Cdd:TIGR02168 680 -EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2445 GEKEIRTLKEQLksqEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGL 2524
Cdd:TIGR02168 759 LEAEIEELEERL---EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2525 IKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRlteevevlreelqntKAAHLKSVNQLEKELQRAQ 2604
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE---------------RASLEEALALLRSELEELS 900
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2605 GKIKLMLKSCRQLEGEKEMLQKELSQLEaAQQQRAGSLVDSNVDEVMTENKALKETLEEKVKEADKYLDK 2674
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLE-LRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
|
| CENP-F_C_Rb_bdg |
pfam10490 |
Rb-binding domain of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
2778-2824 |
8.63e-21 |
|
Rb-binding domain of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. This domain is at the very C-terminus of the C-terminal coiled-coil, and is one of the key Rb-binding domains.
Pssm-ID: 463111 Cd Length: 47 Bit Score: 87.50 E-value: 8.63e-21
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 568911612 2778 PAEHEQETEFEPEGLPEVVKKGFADIPTGKTSPYILRRTTMATRTSP 2824
Cdd:pfam10490 1 NRAEQDDEEFEPEGLPEVVQKGFADIPSGEVSPYILRRTTLQLRCSP 47
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1863-2608 |
1.12e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 100.52 E-value: 1.12e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1863 LERDTESKQKvIIDLKEELFTV-----ISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEV 1937
Cdd:TIGR02168 205 LERQAEKAER-YKELKAELRELelallVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1938 KDKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTI 2017
Cdd:TIGR02168 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2018 SKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEadekkhlSAVAKLKESQRESDSLKDTVETLerelerseeN 2097
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE-------RLEARLERLEDRRERLQQEIEEL---------L 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2098 QELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKE--QAR 2175
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2176 VQMEEDSKSAMLMLQMQLKELRE---------EVA-------ALCNDQETLKAQEQSLDQ-------------------- 2219
Cdd:TIGR02168 508 VKALLKNQSGLSGILGVLSELISvdegyeaaiEAAlggrlqaVVVENLNAAKKAIAFLKQnelgrvtflpldsikgteiq 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2220 --PGEEVHHLKSSIRKLKVHIDADEKKH----------------QNILEQLKESKHHAdllkdRVENLEQELILSEKNMI 2281
Cdd:TIGR02168 588 gnDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvddlDNALELAKKLRPGY-----RIVTLDGDLVRPGGVIT 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2282 FQAEKS-------KAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEK 2354
Cdd:TIGR02168 663 GGSAKTnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2355 VQMKEEakitVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQE 2434
Cdd:TIGR02168 743 EQLEER----IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2435 VEAGKQKLEKGEKEIRTLKEQLksqeqlvcklaqvEGEQQLWQKQKLELRNVTMALEQkvqvLQSENNTLQSTYEALQNS 2514
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRL-------------EDLEEQIEELSEDIESLAAEIEE----LEELIEELESELEALLNE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2515 HKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVN 2594
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN 961
|
810
....*....|....
gi 568911612 2595 QLEKELQRAQGKIK 2608
Cdd:TIGR02168 962 KIEDDEEEARRRLK 975
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
218-1050 |
9.39e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.80 E-value: 9.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 218 LELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLEQKLKTLTEELschrQ 297
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL----Y 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 298 NAESAKRSLEQRIKekekelqeelsRQHQSFQALDSEYTQMKTRLTQELQQVKHLhstlQLELEKVTSVKQQLERNLEEI 377
Cdd:TIGR02168 292 ALANEISRLEQQKQ-----------ILRERLANLERQLEELEAQLEELESKLDEL----AEELAELEEKLEELKEELESL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 378 RLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEim 457
Cdd:TIGR02168 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE-- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 458 LRDLQEKLNQQENslTLEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEK 537
Cdd:TIGR02168 435 LKELQAELEELEE--ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 538 NQISFWKIDSEKLINQIESEKEillgkinhLETSLKTqqvspDSNERIRTLEMERENFTVEIKNLqsmldskMVEIKTQK 617
Cdd:TIGR02168 513 KNQSGLSGILGVLSELISVDEG--------YEAAIEA-----ALGGRLQAVVVENLNAAKKAIAF-------LKQNELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 618 QAYLELQQKSESSDQKHQKEIENMCLKANKLTGQVESLECKLQ-----LLSSEVVTKD-QQYQDLRMEYEtlrdllksRG 691
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyLLGGVLVVDDlDNALELAKKLR--------PG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 692 SSLVTNEDNQRSSednqrssednqRGSLAFEqqpavSDSFANVMGRKgsiNSERSDCSVDGGRSPEHIAILQNRVTSLES 771
Cdd:TIGR02168 645 YRIVTLDGDLVRP-----------GGVITGG-----SAKTNSSILER---RREIEELEEKIEELEEKIAELEKALAELRK 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 772 SLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIHQNfVAETNQCISKLQEDAAVHQNIVAETLATLESK----EKEL 847
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ-LEERIAQLSKELTELEAEIEELEERLEEAEEElaeaEAEI 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 848 QLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEkmnl 927
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE---- 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 928 lqkHEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLEcmlsECTALCENRKNELEQ 1007
Cdd:TIGR02168 861 ---IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE----ELREKLAQLELRLEG 933
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 568911612 1008 LKETFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEITN 1050
Cdd:TIGR02168 934 LEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1962-2702 |
3.19e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 3.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1962 QEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQnfqIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEE 2041
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE---LKAELRELELALLVLRLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2042 VHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDE 2121
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2122 MTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEdsksamlmlqmQLKELREEVA 2201
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL-----------QIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2202 ALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKhqnilEQLKESKHHADLLKDRVENLEQELILSEkNMI 2281
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE-----EELEELQEELERLEEALEELREELEEAE-QAL 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2282 FQAEKSKAEIQTLKSEIQRMAQNLQDLQ--------------------LELISTRSENENLMKELKKE---QERVSDLET 2338
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQENLEGFSegvkallknqsglsgilgvlSELISVDEGYEAAIEAALGGrlqAVVVENLNA 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2339 INSSIEnLLKDKEQEKVQMKEEAKI---TVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQ-------VQTLelekA 2408
Cdd:TIGR02168 558 AKKAIA-FLKQNELGRVTFLPLDSIkgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllggvlvVDDL----D 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2409 QLLQDLGEAKNKYIIFQ------SSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLV----CKLAQVEGEQQLWQK 2478
Cdd:TIGR02168 633 NALELAKKLRPGYRIVTldgdlvRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIaeleKALAELRKELEELEE 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2479 QKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAE-------LQRELR 2551
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEaeaeieeLEAQIE 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2552 DMLQKTTQLSEDYNKEKNRLTE------EVEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQ 2625
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLlneeaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568911612 2626 KELSQLEA--AQQQRAGSLVDSNVDEVMTENKalkeTLEEKVKEADKYLDKycsLLISHEELEKAKEILEIEVARLKSR 2702
Cdd:TIGR02168 873 SELEALLNerASLEEALALLRSELEELSEELR----ELESKRSELRRELEE---LREKLAQLELRLEGLEVRIDNLQER 944
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1699-2536 |
6.56e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 85.12 E-value: 6.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1699 QNLQLQKDTLNENLRLLPEVEDWDKKVesLLNEIMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSEKLEslp 1778
Cdd:TIGR02169 201 ERLRREREKAERYQALLKEKREYEGYE--LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLE--- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1779 cnqEVCLRVER--SEEDLGFNLDMGAnellSKSTKDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVV 1856
Cdd:TIGR02169 276 ---ELNKKIKDlgEEEQLRVKEKIGE----LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1857 QAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALdqmskkmKEKIEELESHQREslrhigavese 1936
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL-------KREINELKRELDR----------- 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1937 vkdKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLvkESQNFQIKLTESECEKQT 2016
Cdd:TIGR02169 411 ---LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY--EQELYDLKEEYDRVEKEL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2017 ISKALEVALKEKgefavQLSSAQEEVHQLRRGIEKLSVRIEAdekkHLSAVAKLKESQRESDSlkdTVETLERELErsee 2096
Cdd:TIGR02169 486 SKLQRELAEAEA-----QARASEERVRGGRAVEEVLKASIQG----VHGTVAQLGSVGERYAT---AIEVAAGNRL---- 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2097 nQELAILDSENLKAEVETLKAQK---------DEMTKSLRI-----------FELDLVTVRTERENLAKQLQEKQSRVSE 2156
Cdd:TIGR02169 550 -NNVVVEDDAVAKEAIELLKRRKagratflplNKMRDERRDlsilsedgvigFAVDLVEFDPKYEPAFKYVFGDTLVVED 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2157 LDE--------RCSSLRRLLEEKEQARVQMEEDSKSAMLM---LQMQLKELREEVAALCNDQETLKAQEQSLDQpgeEVH 2225
Cdd:TIGR02169 629 IEAarrlmgkyRMVTLEGELFEKSGAMTGGSRAPRGGILFsrsEPAELQRLRERLEGLKRELSSLQSELRRIEN---RLD 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2226 HLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELilseknmifqaEKSKAEIQTLKSEIQRMAQNL 2305
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI-----------ENVKSELKELEARIEELEEDL 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2306 QDLQLELIS-----TRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEakitVEMLQTQLKELNETVV 2380
Cdd:TIGR02169 775 HKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE----IQELQEQRIDLKEQIK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2381 SLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQE 2460
Cdd:TIGR02169 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568911612 2461 QLVCKLAQVEGEQQLWQKQKLELRNVTM---ALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERV 2536
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEELSLEDVQAelqRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1827-2632 |
1.18e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 83.96 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1827 DMERELTRIKSEKANIEHHILSVETNLEVV--QAEKLCLERDTESKQKVIIDLKEELftvisernrlreELDNVSKESKA 1904
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKrqQLERLRREREKAERYQALLKEKREY------------EGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1905 LDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDkahlqEQLQnLQNDSQELSLAIGELEI 1984
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE-----EQLR-VKEKIGELEAEIASLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1985 QIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHL 2064
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2065 SAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLA 2144
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2145 KQLQEKQSRVSELDERCSSLRRLLEEKE---QARVQMEEDSKSAMLMLQ----------MQLKELREEVAALC------- 2204
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEaqaRASEERVRGGRAVEEVLKasiqgvhgtvAQLGSVGERYATAIevaagnr 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2205 ------NDQETLKAQEQSLDQ---------PGEEV--HHLKSSIRKLKVHIDAD------EKKHQN----------ILEQ 2251
Cdd:TIGR02169 549 lnnvvvEDDAVAKEAIELLKRrkagratflPLNKMrdERRDLSILSEDGVIGFAvdlvefDPKYEPafkyvfgdtlVVED 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2252 LKESKHHadLLKDRVENLEQELILSEKNMI--FQAEKSKAEIQT-LKSEIQRMAQNLQDLQLELISTRSENENLMKELKK 2328
Cdd:TIGR02169 629 IEAARRL--MGKYRMVTLEGELFEKSGAMTggSRAPRGGILFSRsEPAELQRLRERLEGLKRELSSLQSELRRIENRLDE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2329 EQERVSDLETINSSIENLLKDKEQEKVQMKEEAkitvEMLQTQLKELNETVvslcndqEVSKTKEQNLGSQVQTLELEKA 2408
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERL----EELEEDLSSLEQEI-------ENVKSELKELEARIEELEEDLH 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2409 QLLQDLGEAKNKYiifqssvnaLTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcKLAQVEGEQQLWQKQKLElrnvtm 2488
Cdd:TIGR02169 776 KLEEALNDLEARL---------SHSRIPEIQAELSKLEEEVSRIEARLREIEQ---KLNRLTLEKEYLEKEIQE------ 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2489 aLEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEK 2568
Cdd:TIGR02169 838 -LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568911612 2569 NRLteevevlrEELQNTKAAHLKSVNQLEKELQRAQgKIKLMLKSCRQLEGEKEMLQKELSQLE 2632
Cdd:TIGR02169 917 KRL--------SELKAKLEALEEELSEIEDPKGEDE-EIPEEELSLEDVQAELQRVEEEIRALE 971
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1811-2520 |
1.28e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.95 E-value: 1.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1811 KDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNR 1890
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1891 LREELDNVSKESKALDQMSKKMKEKIEELEShQRESLrhigavESEVKDKADLIQtlsfnvgELTKDKAHLQEQLQNLQN 1970
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKE-ELESL------EAELEELEAELE-------ELESRLEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1971 DSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQtiSKALEVALKEKGEFAVQLSSAQEEVHQLRRGIE 2050
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2051 KLSVRIEADEKKHLSAVAKLKESQRESDSLKDT---VETLERELERSEENQ--------------------ELAI----- 2102
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLqenLEGFSEGVKALLKNQsglsgilgvlselisvdegyEAAIeaalg 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2103 -----LDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSS-------------- 2163
Cdd:TIGR02168 545 grlqaVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFdpklrkalsyllgg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2164 ------------LRRLLEEKEQ-------------ARVQMEEDSKSAMLMLQMQLKELREEVAALcndQETLKAQEQSLD 2218
Cdd:TIGR02168 625 vlvvddldnaleLAKKLRPGYRivtldgdlvrpggVITGGSAKTNSSILERRREIEELEEKIEEL---EEKIAELEKALA 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2219 QPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEK----------SK 2288
Cdd:TIGR02168 702 ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERleeaeeelaeAE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2289 AEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEE-AKITVEM 2367
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDiESLAAEI 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2368 --LQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYiifqssvNALTQEVEAGKQKLEKG 2445
Cdd:TIGR02168 862 eeLEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL-------EELREKLAQLELRLEGL 934
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2446 EKEIRTLKEQLKSQEQLVCKLAQ-----VEGEQQLWQKQKLELRN-------VTMALEQKVQVLQSENNTLQSTYEALQN 2513
Cdd:TIGR02168 935 EVRIDNLQERLSEEYSLTLEEAEalenkIEDDEEEARRRLKRLENkikelgpVNLAAIEEYEELKERYDFLTAQKEDLTE 1014
|
....*..
gi 568911612 2514 SHKSLES 2520
Cdd:TIGR02168 1015 AKETLEE 1021
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1887-2458 |
6.17e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 6.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1887 ERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQEQLQ 1966
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1967 NLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLR 2046
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2047 RGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSL 2126
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2127 RIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDsksamlmlQMQLKELREEVAALCND 2206
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA--------VLIGVEAAYEAALEAAL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2207 QETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEK 2286
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2287 SKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIEnLLKDKEQEKVQMKEEAKITVE 2366
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE-ELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2367 MLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEaknkyiifqssvnaltqEVEAGKQKLEKGE 2446
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL-----------------EELPEPPDLEELE 766
|
570
....*....|..
gi 568911612 2447 KEIRTLKEQLKS 2458
Cdd:COG1196 767 RELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1698-2377 |
6.72e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.17 E-value: 6.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1698 IQNLQLQKDTLN-ENLRLLPEVEDWDKKVESLLNEI-------MEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKAD 1769
Cdd:TIGR02168 262 LQELEEKLEELRlEVSELEEEIEELQKELYALANEIsrleqqkQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1770 LSEKLESLPCNQEVCLRVERSEEDLGFNLdmganellsKSTKDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHILSV 1849
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEEL---------ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1850 ETNLEVVQAEKLCLERDTESKQKV-----IIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESH-- 1922
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKelqaeLEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARld 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1923 ----QRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDK--------AHLQEQLQNL-QNDSQELSLAIGELE------ 1983
Cdd:TIGR02168 493 slerLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDegyeaaieAALGGRLQAVvVENLNAAKKAIAFLKqnelgr 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1984 --------IQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKekGEFAVQ-LSSAQEEVHQLRRG------ 2048
Cdd:TIGR02168 573 vtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG--GVLVVDdLDNALELAKKLRPGyrivtl 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2049 ----IEKLSVRIEADEKKHLSAVAKlkesQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTK 2124
Cdd:TIGR02168 651 dgdlVRPGGVITGGSAKTNSSILER----RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2125 SLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSamlmLQMQLKELREEVAALc 2204
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKAL- 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2205 ndQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIfQA 2284
Cdd:TIGR02168 802 --REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE-AL 878
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2285 EKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVS--------DLETINSSIENLLKDKEQEKVQ 2356
Cdd:TIGR02168 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLElrleglevRIDNLQERLSEEYSLTLEEAEA 958
|
730 740
....*....|....*....|.
gi 568911612 2357 MKEEAKITVEMLQTQLKELNE 2377
Cdd:TIGR02168 959 LENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1714-2456 |
8.26e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 78.19 E-value: 8.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1714 LLPEVEDWDKKVESLLNEIMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSE--------KLESLPCNQEVCl 1785
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlrvkeKIGELEAEIASL- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1786 rvERSEEDLGFNLDMGANELlskstkDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLER 1865
Cdd:TIGR02169 307 --ERSIAEKERELEDAEERL------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1866 DTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQREslrhigaVESEVKDKADLIQ 1945
Cdd:TIGR02169 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE-------LEEEKEDKALEIK 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1946 TLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTI-------- 2017
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqlg 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2018 ------SKALEVALKEKGEFAV--QLSSAQEEVHQLRRgiEKLS------VRIEADEKKHLSAVAK---------LKESQ 2074
Cdd:TIGR02169 532 svgeryATAIEVAAGNRLNNVVveDDAVAKEAIELLKR--RKAGratflpLNKMRDERRDLSILSEdgvigfavdLVEFD 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2075 RESDS-----LKDTVETLERELERSEENQ------------------------ELAILDSENLKAEVETLKAQKDEMTKS 2125
Cdd:TIGR02169 610 PKYEPafkyvFGDTLVVEDIEAARRLMGKyrmvtlegelfeksgamtggsrapRGGILFSRSEPAELQRLRERLEGLKRE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2126 LRifelDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSamlmlqmQLKELREEVAalcN 2205
Cdd:TIGR02169 690 LS----SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE-------DLSSLEQEIE---N 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2206 DQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDadEKKHQNILEQLKESKHHADLLKDRVENLEQELilseknmifqaE 2285
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEEVSRIEARLREIEQKL-----------N 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2286 KSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLE----TINSSIENLLKDKEQEKVQMKE-- 2359
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalrDLESRLGDLKKERDELEAQLREle 902
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2360 ----EAKITVEMLQTQLKELNETVVSLC-NDQEVSKTKEQNLGSQVQTLELEKAQL--------LQDLGEAKNKYIIFQS 2426
Cdd:TIGR02169 903 rkieELEAQIEKKRKRLSELKAKLEALEeELSEIEDPKGEDEEIPEEELSLEDVQAelqrveeeIRALEPVNMLAIQEYE 982
|
810 820 830
....*....|....*....|....*....|
gi 568911612 2427 SVNALTQEVEAGKQKLEKGEKEIRTLKEQL 2456
Cdd:TIGR02169 983 EVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
341-958 |
9.42e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 9.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 341 RLTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRT 420
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 421 REVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENSLtLEKLKLALADLERQRNCSQDLLKKREh 500
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL-LEAEAELAEAEEELEELAEELLEALR- 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 501 hidQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQIsfwkIDSEKLINQIESEKEILLGKINHLETSLKTQQvspd 580
Cdd:COG1196 394 ---AAAELAAQLEELEEAEEALLERLERLEEELEELEEAL----AELEEEEEEEEEALEEAAEEEAELEEEEEALL---- 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 581 snERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTGQVES-----L 655
Cdd:COG1196 463 --ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAayeaaL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 656 ECKLQLLSSEVVTKDQQYQDLRMEYetLRDLLKSRGSSLVTNEDNQRSSEDNQRSSEDNQRGSLAFEQQPAVSDSFANVM 735
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEY--LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 736 GrkgSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIhqnfvaet 815
Cdd:COG1196 619 G---DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER-------- 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 816 nqcisKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSI 895
Cdd:COG1196 688 -----LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 896 ISLSKKnIEELTQANEALKEVN-------EALEQEKMNLLQKHEKITSCIAEQERSIAELsDQYKQERLQ 958
Cdd:COG1196 763 EELERE-LERLEREIEALGPVNllaieeyEELEERYDFLSEQREDLEEARETLEEAIEEI-DRETRERFL 830
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1764-2346 |
5.45e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 75.08 E-value: 5.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1764 RKEKADLSEKLESLPCN-QEVCLRVERSEEdlgfnldmgaNELLSKSTKDNATNTEDNYKEKfldmERELTRIKSEkani 1842
Cdd:PRK02224 198 EKEEKDLHERLNGLESElAELDEEIERYEE----------QREQARETRDEADEVLEEHEER----REELETLEAE---- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1843 ehhilsvetnLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESH 1922
Cdd:PRK02224 260 ----------IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1923 QRESLRHIGAVESEvkdkadlIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQN 2002
Cdd:PRK02224 330 LEECRVAAQAHNEE-------AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2003 FQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRgieklsvrieadekkhLSAVAKLKESQREsdslkd 2082
Cdd:PRK02224 403 APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA----------------LLEAGKCPECGQP------ 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2083 tVETLERELERSEENQELAILDSE--NLKAEVETLKAqKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDER 2160
Cdd:PRK02224 461 -VEGSPHVETIEEDRERVEELEAEleDLEEEVEEVEE-RLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRER 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2161 CSSLRRLLEEKEQARVQMEEDSKSAMLmlqmQLKELREEVAALCNDQETLKAQEQSLdqpgEEVHHLKSSIRKLKVHIDA 2240
Cdd:PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEE----EAEEAREEVAELNSKLAELKERIESL----ERIRTLLAAIADAEDEIER 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2241 DEKKHQNILEQLKESKHHADLLKDRVENLEQELilsEKNMI--FQAEKSKAE--IQTLKSEIQRMAQNLQDLQLELISTR 2316
Cdd:PRK02224 611 LREKREALAELNDERRERLAEKRERKRELEAEF---DEARIeeAREDKERAEeyLEQVEEKLDELREERDDLQAEIGAVE 687
|
570 580 590
....*....|....*....|....*....|....
gi 568911612 2317 SENENLmKELKKE----QERVSDLETINSSIENL 2346
Cdd:PRK02224 688 NELEEL-EELRERrealENRVEALEALYDEAEEL 720
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1951-2553 |
5.81e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 5.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1951 VGELTKDKAHLQEQ------LQNLQNDSQELSLAIGELEIQigQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVA 2024
Cdd:COG1196 195 LGELERQLEPLERQaekaerYRELKEELKELEAELLLLKLR--ELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2025 LKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILD 2104
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2105 SENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKS 2184
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2185 AMLMLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKD 2264
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2265 RVENLEQELILSEKNMIFQAEKSKAEIqtlksEIQRMAQNLQDLQLELISTRSENENLMKELKKeqERVSDLEtiNSSIE 2344
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAA-----LEAALAAALQNIVVEDDEVAAAAIEYLKAAKA--GRATFLP--LDKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2345 NLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIF 2424
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2425 QSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEqlvckLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTL 2504
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEAL-----LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 568911612 2505 QSTYEAlqnshkslESELGLIKLEKVALVERVSTISGKEAELQRELRDM 2553
Cdd:COG1196 739 EELLEE--------EELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1863-2463 |
1.30e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 73.90 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1863 LERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQREslrhigaVESEVKDKAD 1942
Cdd:TIGR04523 45 IKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK-------INSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1943 LIQTLSFNVGELTKDKAHLQEQ-------LQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECE-- 2013
Cdd:TIGR04523 118 QKNKLEVELNKLEKQKKENKKNidkflteIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKll 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2014 -KQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELE 2092
Cdd:TIGR04523 198 kLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2093 RSEENQELAILDSENLKAEVETLKAQKDEMTKSlrifeldlvTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKE 2172
Cdd:TIGR04523 278 QNNKKIKELEKQLNQLKSEISDLNNQKEQDWNK---------ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLK 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2173 QARVQMEEDSKSamlmLQMQLKELREEVaalcndqETLKAQEQSLDQpgeEVHHLKSSIRKLKVHIDADEKKHQNILEQL 2252
Cdd:TIGR04523 349 KELTNSESENSE----KQRELEEKQNEI-------EKLKKENQSYKQ---EIKNLESQINDLESKIQNQEKLNQQKDEQI 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2253 KESKHHADLLKDRVENLEQELILSE-----------------KNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELIST 2315
Cdd:TIGR04523 415 KKLQQEKELLEKEIERLKETIIKNNseikdltnqdsvkeliiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSK 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2316 RSENENLMKELKKEQERVSDLETINSS--------------IENLLKDKEQEKVQMKEEakITVEMLQTQLKELNETVVS 2381
Cdd:TIGR04523 495 EKELKKLNEEKKELEEKVKDLTKKISSlkekieklesekkeKESKISDLEDELNKDDFE--LKKENLEKEIDEKNKEIEE 572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2382 LCNDQEVSKTKEqnlgSQVQTLELEKAQLLQDLGEAKNKYIIFQSSvnaLTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQ 2461
Cdd:TIGR04523 573 LKQTQKSLKKKQ----EEKQELIDQKEKEKKDLIKEIEEKEKKISS---LEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
..
gi 568911612 2462 LV 2463
Cdd:TIGR04523 646 EV 647
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1863-2461 |
2.04e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 73.17 E-value: 2.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1863 LERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDqmskKMKEKIEELESHqreslrhigavesevkdkad 1942
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE----ELKEEIEELEKE-------------------- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1943 liqtlsfnVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNkekeslvkesqnfqiKLTESECEKQTISKALE 2022
Cdd:PRK03918 247 --------LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK---------------ELKEKAEEYIKLSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2023 VALKEKGEFAVQLSSAQEEVHQLRRGIEKLsvriEADEKKHLSAVAKLKESQRESDSLKDTVET----LERELERSEENQ 2098
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKEL----EEKEERLEELKKKLKELEKRLEELEERHELyeeaKAKKEELERLKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2099 ELAILDSENLKAEVETLKAQKDEMTKSLRifeldlvTVRTERENLAKQLQEKQSRVSELDE---RCSSLRRLLEEKEQAR 2175
Cdd:PRK03918 380 RLTGLTPEKLEKELEELEKAKEEIEEEIS-------KITARIGELKKEIKELKKAIEELKKakgKCPVCGRELTEEHRKE 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2176 VqMEEDSKsamlmlqmQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKES 2255
Cdd:PRK03918 453 L-LEEYTA--------ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2256 KHHADLLKDRVENLEQELILSEKNMifqaekskAEIQTLKSEIQRMAQNLQDLQLELISTRSENENL-MKELKKEQERVS 2334
Cdd:PRK03918 524 AEEYEKLKEKLIKLKGEIKSLKKEL--------EKLEELKKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2335 DLETI-NSSIEnlLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLcndQEVSKTKEqnlgsqvqtlELEKAQLLQD 2413
Cdd:PRK03918 596 ELEPFyNEYLE--LKDAEKELEREEKELKKLEEELDKAFEELAETEKRL---EELRKELE----------ELEKKYSEEE 660
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 568911612 2414 LGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQ 2461
Cdd:PRK03918 661 YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2052-2633 |
6.57e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 6.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2052 LSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFEL 2131
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2132 DLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKELREEVAALCNDQETLK 2211
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2212 AQEQSLDQpgeevhhlkssirkLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKnmifQAEKSKAEI 2291
Cdd:COG1196 376 EAEEELEE--------------LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE----ALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2292 QTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQ 2371
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2372 LKELNETVVSLCNDQEVSKTK------EQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKG 2445
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAaleaalAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2446 EKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLI 2525
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2526 KLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLksvnQLEKELQRAQG 2605
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL----EEEELLEEEAL 753
|
570 580
....*....|....*....|....*...
gi 568911612 2606 KIKLMLKSCRQLEGEKEMLQKELSQLEA 2633
Cdd:COG1196 754 EELPEPPDLEELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2114-2699 |
7.21e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 7.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2114 TLKAQKDEMTKSLRIFELDLVtvRTERENLAKQLQEKQSRVSELDERcssLRRLLEEKEQARVQMEEdsksamlmLQMQL 2193
Cdd:COG1196 217 ELKEELKELEAELLLLKLREL--EAELEELEAELEELEAELEELEAE---LAELEAELEELRLELEE--------LELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2194 KELREEVAALCNDQETLKAQEQSLDqpgEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQEL 2273
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLE---ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2274 ILSEKnmifQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQE 2353
Cdd:COG1196 361 AEAEE----ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2354 KVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQL-----LQDLGEAKNKYIIFQSSV 2428
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLlllleAEADYEGFLEGVKAALLL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2429 NALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQ-LVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQST 2507
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQnIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2508 YEALQNSHKS-LESELGLIKLEKVALVERVSTISGKEA--ELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQN 2584
Cdd:COG1196 597 IGAAVDLVASdLREADARYYVLGDTLLGRTLVAARLEAalRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2585 TKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEEK 2664
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
570 580 590
....*....|....*....|....*....|....*
gi 568911612 2665 VKEADkyldkycsllisHEELEKAKEILEIEVARL 2699
Cdd:COG1196 757 PEPPD------------LEELERELERLEREIEAL 779
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2106-2633 |
1.34e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.48 E-value: 1.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2106 ENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERE---NLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDS 2182
Cdd:PRK03918 224 EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEkirELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2183 KsamlmLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQnILEQLKESKHHADLL 2262
Cdd:PRK03918 304 E-----YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2263 KDRVENLEQELIlseKNMIFQAEKSKAEIQ----TLKSEIQRMAQNLQDLQLELISTRS---------------ENENLM 2323
Cdd:PRK03918 378 KKRLTGLTPEKL---EKELEELEKAKEEIEeeisKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelteeHRKELL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2324 KELKKEQERVS-DLETINSSIENLLKDKEQ-EKVQMKEEAKITVEMLQTQLKELNEtvvslcndqevsKTKEQNLGsqvq 2401
Cdd:PRK03918 455 EEYTAELKRIEkELKEIEEKERKLRKELRElEKVLKKESELIKLKELAEQLKELEE------------KLKKYNLE---- 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2402 tlELEKAqllqdlgeaknkyiifqssvnalTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKL 2481
Cdd:PRK03918 519 --ELEKK-----------------------AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2482 ELRNVTMALEQK-VQVLQSENNTLQSTYE---ALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELqRELRDMLQkt 2557
Cdd:PRK03918 574 ELLKELEELGFEsVEELEERLKELEPFYNeylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL-EELRKELE-- 650
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568911612 2558 tQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEA 2633
Cdd:PRK03918 651 -ELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1853-2200 |
2.88e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.71 E-value: 2.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1853 LEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGA 1932
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1933 VESEVKDKADLIQTLSFNVGELTKDKAHL-----QEQLQNLQNDSQEL-------SLAIGELEIQIGQLNKEKESLVKES 2000
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLeeevsriEARLREIEQKLNRLTLEKEYLEKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2001 QNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLsvrieadEKKHLSAVAKLKESQRESDSL 2080
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL-------KKERDELEAQLRELERKIEEL 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2081 KDTVETLERELERseenqelaildsenLKAEVETLKAQKDEMTKSLRIFELDLVTVRTErENLAKQLQEKQSRVSEL--- 2157
Cdd:TIGR02169 909 EAQIEKKRKRLSE--------------LKAKLEALEEELSEIEDPKGEDEEIPEEELSL-EDVQAELQRVEEEIRALepv 973
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568911612 2158 -----DERCSSLRRLLEEKEQARVQMEEdsKSAMLMLQMQLKELREEV 2200
Cdd:TIGR02169 974 nmlaiQEYEEVLKRLDELKEKRAKLEEE--RKAILERIEEYEKKKREV 1019
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1811-2553 |
3.82e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 69.38 E-value: 3.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1811 KDNATNTEDNYKEKFLDMERELTRI----KSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVIS 1886
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESnelhEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1887 ERNRLREELDNVSKESKA-LDQMSKKM---------------------KEKIEELESHQRESLRHIGAVESEVKDKADli 1944
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTqIEQLRKMMlshegvlqeirsilvdfeeasGKKIYEHDSMSTMHFRSLGSAISKILRELD-- 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1945 QTLSFNVGELTKdkahLQEQLQNLQNDSQ-ELSLAIGELEIQIGQLNKEKESlvkESQNFQIKLTESECEKQTISKALEV 2023
Cdd:pfam15921 231 TEISYLKGRIFP----VEDQLEALKSESQnKIELLLQQHQDRIEQLISEHEV---EITGLTEKASSARSQANSIQSQLEI 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2024 ----ALKEKGEFAVQLSSAQEEVHQLRRGIEKLSV----RIEADEKKHLSAVAKLKESQRESDSLkdtvetlerelerse 2095
Cdd:pfam15921 304 iqeqARNQNSMYMRQLSDLESTVSQLRSELREAKRmyedKIEELEKQLVLANSELTEARTERDQF--------------- 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2096 eNQELAILDSENLKAEVETLKAQKD---EMTKSLRIFELDLVTVRTeRENLAKQLQEKQSRVSELDERCSSLRRLLE--- 2169
Cdd:pfam15921 369 -SQESGNLDDQLQKLLADLHKREKElslEKEQNKRLWDRDTGNSIT-IDHLRRELDDRNMEVQRLEALLKAMKSECQgqm 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2170 EKEQARVQMEEDSKSAMLMLQMQLKELREEVAALCndqETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNIL 2249
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVV---EELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLR 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2250 EQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAeIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKE 2329
Cdd:pfam15921 524 SRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKV-IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR 602
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2330 QERVSDLEtinssienLLKDKEQEKVQmKEEAKITvemlqtqlkelnetvvslcnDQEVSKTKEQNLGSQ----VQTLEL 2405
Cdd:pfam15921 603 RLELQEFK--------ILKDKKDAKIR-ELEARVS--------------------DLELEKVKLVNAGSErlraVKDIKQ 653
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2406 EKAQLLQDLGEAKNKyiifqssVNALTQEVEAGKQKLEKGEKEIRT----LKEQLKSQ----EQLVCKLAQVEGEQ---- 2473
Cdd:pfam15921 654 ERDQLLNEVKTSRNE-------LNSLSEDYEVLKRNFRNKSEEMETttnkLKMQLKSAqselEQTRNTLKSMEGSDgham 726
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2474 ---QLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELQREL 2550
Cdd:pfam15921 727 kvaMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV 806
|
...
gi 568911612 2551 RDM 2553
Cdd:pfam15921 807 ANM 809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-965 |
4.45e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 4.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 203 QAKAQNQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLE 282
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 283 QKLKTLTEELSCHRQNAESAKRSLEQrIKEKEKELQEELSRQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQLELEK 362
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELES-LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 363 VTSVKQQLERNLEEIRLKLSRA-EQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQ 441
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 442 NFAEemkakntsqeiMLRDLQEklNQQENSLTLEKLKLALADLERQRNCSQDLLKKREH-----------HIDQL-NNKL 509
Cdd:TIGR02168 489 ARLD-----------SLERLQE--NLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalggRLQAVvVENL 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 510 NKIEKEFETL------------LSALELKKKECEELKEEKNQISF--WKIDSEKLINQIESEKEILLGKInHLETSLKT- 574
Cdd:TIGR02168 556 NAAKKAIAFLkqnelgrvtflpLDSIKGTEIQGNDREILKNIEGFlgVAKDLVKFDPKLRKALSYLLGGV-LVVDDLDNa 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 575 --QQVSPDSNERIRTLE-------------------------MERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKS 627
Cdd:TIGR02168 635 leLAKKLRPGYRIVTLDgdlvrpggvitggsaktnssilerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 628 ESSDQKHQ---KEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLLKSRGSSLVTNEdnQRSS 704
Cdd:TIGR02168 715 EQLRKELEelsRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE--AQIE 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 705 EDNQRSSEDNQRGSLAFEQQPAVSDSFANVMGRKGSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQ 784
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 785 MRCEELLQIKGEVEENLSKAEQIHQNFVAETNQCISKLQEdaavhqnivaetlatlesKEKELQLLKEKLEAQQTEVQKL 864
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSE------------------LRRELEELREKLAQLELRLEGL 934
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 865 NKNNCLLEGTLKEL-QLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVN-------EALEQEKMNLLQKHEKITS 936
Cdd:TIGR02168 935 EVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNlaaieeyEELKERYDFLTAQKEDLTE 1014
|
810 820
....*....|....*....|....*....
gi 568911612 937 CIAEQERSIAELSDQYKQERLQLLQRCEE 965
Cdd:TIGR02168 1015 AKETLEEAIEEIDREARERFKDTFDQVNE 1043
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2210-2713 |
1.53e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.97 E-value: 1.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2210 LKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSE---KNMIFQAEK 2286
Cdd:TIGR04523 91 LKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNnkyNDLKKQKEE 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2287 SKAEIQTLKSEIQRMAQNLQDLQLELIS---TRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKI 2363
Cdd:TIGR04523 171 LENELNLLEKEKLNIQKNIDKIKNKLLKlelLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISN 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2364 TVEMLQTQLKELNETVVSLCNDQ-EVSKTKE---------QNLGSQVQTLELEKAQ-----LLQDLGEAKNKYIIFQSSV 2428
Cdd:TIGR04523 251 TQTQLNQLKDEQNKIKKQLSEKQkELEQNNKkikelekqlNQLKSEISDLNNQKEQdwnkeLKSELKNQEKKLEEIQNQI 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2429 NALTQEVEAGKQKLEKGEKEIRTLK-EQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTM---ALEQKVQVLQSENNTL 2504
Cdd:TIGR04523 331 SQNNKIISQLNEQISQLKKELTNSEsENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESqinDLESKIQNQEKLNQQK 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2505 QSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQ-------LSEDYNKEKNRLTEEVEV 2577
Cdd:TIGR04523 411 DEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESletqlkvLSRSINKIKQNLEQKQKE 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2578 LREELQNTKAahLKSVN-QLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAaqqqragslvDSNVDEVMTENKA 2656
Cdd:TIGR04523 491 LKSKEKELKK--LNEEKkELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED----------ELNKDDFELKKEN 558
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 568911612 2657 LKETLEEKVKEADKYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQDLQSSPL 2713
Cdd:TIGR04523 559 LEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSL 615
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2156-2700 |
1.67e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.01 E-value: 1.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2156 ELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQmQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLK 2235
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLR-EINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2236 VHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQ-----ELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQL 2310
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2311 ELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSK 2390
Cdd:PRK03918 332 ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2391 TKEQNLGSQVQTL-----ELEKAQLL----------QDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTL--- 2452
Cdd:PRK03918 412 ARIGELKKEIKELkkaieELKKAKGKcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVlkk 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2453 KEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTM-ALEQKVQVLQSENNTLQSTYEALqnshKSLESELGLIKLEKVA 2531
Cdd:PRK03918 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYeKLKEKLIKLKGEIKSLKKELEKL----EELKKKLAELEKKLDE 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2532 LVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREElqntkaahLKSVNQLEKELQRAQGKIKLML 2611
Cdd:PRK03918 568 LEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELERE--------EKELKKLEEELDKAFEELAETE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2612 KSCRQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTEnkalKETLEEKVKEADKYLDKYCSLLISHEELEKAKEI 2691
Cdd:PRK03918 640 KRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAE----LEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
....*....
gi 568911612 2692 LEIEVARLK 2700
Cdd:PRK03918 716 LEKALERVE 724
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1478-2176 |
1.95e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 1.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1478 VEGLEVLCQVYLQSLKNLE---EKTESQRIMKNKEIEKLEQLLSSERKELSCLRKQYLSEKEQwQQKLTSVTLEMESKLA 1554
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLErqlEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE-LEELEAELEELESRLE 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1555 EekQQTKTLSLELEVARLQLQELDLSSR-SLLGTDLESVVRCQNDNYDIKESEvyiSETTEKTPKQDTDQTCDKDIQqdl 1633
Cdd:TIGR02168 376 E--LEEQLETLRSKVAQLELQIASLNNEiERLEARLERLEDRRERLQQEIEEL---LKKLEEAELKELQAELEELEE--- 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1634 GLETSVTESETTRLTGEGCEEQppktncEAPAEDKTQDCSECISELCSSSNVLVPMD--VLEDQGSIQNLQLQKDTLNEN 1711
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREE------LEEAEQALDAAERELAQLQARLDSLERLQenLEGFSEGVKALLKNQSGLSGI 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1712 LRLLPEV----EDWDKKVESLLNEIMEA------DSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSEKLESLPCNQ 1781
Cdd:TIGR02168 522 LGVLSELisvdEGYEAAIEAALGGRLQAvvvenlNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFL 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1782 EVCLRVERSEEDLGFNLDMGANELLSKSTKDNATNTEDNYKEKFLDMERELTRIKSE------KANIEHHILSVETNLEV 1855
Cdd:TIGR02168 602 GVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGgvitggSAKTNSSILERRREIEE 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1856 VQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVES 1935
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1936 EVKDKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNkekeslvKESQNFQIKLTESECEKQ 2015
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-------EEAANLRERLESLERRIA 834
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2016 TISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVetlerelerse 2095
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL----------- 903
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2096 enqelaildsENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQAR 2175
Cdd:TIGR02168 904 ----------RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
.
gi 568911612 2176 V 2176
Cdd:TIGR02168 974 L 974
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1722-2052 |
4.33e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 4.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1722 DKKVESLLNEIMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSEKLESLpcnQEVCLRVERSEEDLGFNLDMG 1801
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL---RKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1802 ANELLskstkdnatntedNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEEL 1881
Cdd:TIGR02168 753 SKELT-------------ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1882 FTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHL 1961
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1962 QEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESEcekqtiSKALEVALKEKGEFAVQLSSAQEE 2041
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY------SLTLEEAEALENKIEDDEEEARRR 973
|
330
....*....|.
gi 568911612 2042 VHQLRRGIEKL 2052
Cdd:TIGR02168 974 LKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1520-2269 |
8.44e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 8.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1520 ERKELSCLRKQYLSEKEQWQQKLTSVTlEMESKLAEEKQQTKTLSLELEVARLQLQELDLSSRSLLGT---------DLE 1590
Cdd:TIGR02168 223 RELELALLVLRLEELREELEELQEELK-EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyalaneisRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1591 SVVRCQNDNydIKESEVYISETTEKTPKQDTDQTCDKDIQQDLGLETSVTESETTRLTGEGCEEQPPKTNCEAPAEDKTQ 1670
Cdd:TIGR02168 302 QQKQILRER--LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1671 dcseciselcsssnvlvpmDVLEDQGSIQNLQLQKDTLNENL-RLLPEVEDWDKKVESLLNEIMEADSKlsLQEVQLKMK 1749
Cdd:TIGR02168 380 -------------------QLETLRSKVAQLELQIASLNNEIeRLEARLERLEDRRERLQQEIEELLKK--LEEAELKEL 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1750 IATCIQLEKIVKDLRKEKADLSEKLESLpcnqevclrvERSEEDLGFNLDMGANELLSKSTKDNATNTEDNYKEKFLDME 1829
Cdd:TIGR02168 439 QAELEELEEELEELQEELERLEEALEEL----------REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1830 RELTRIKSEKANIEHHILSV-------ETNLEVVQAE---KLCLERDTESKQKVIIDLKEELFTV--------------I 1885
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSELisvdegyEAAIEAALGGrlqAVVVENLNAAKKAIAFLKQNELGRVtflpldsikgteiqG 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1886 SERNRLREELDNVS----------KESKALD----------------QMSKKMKEKiEELESHQRESLRHIGAVESEVKD 1939
Cdd:TIGR02168 589 NDREILKNIEGFLGvakdlvkfdpKLRKALSyllggvlvvddldnalELAKKLRPG-YRIVTLDGDLVRPGGVITGGSAK 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1940 KADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISK 2019
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2020 ALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQE 2099
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2100 LAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQME 2179
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2180 EdsksAMLMLQMQLKELREEVAALCNDQETLKAQEQsldqpgeevhHLKSSIR-KLKVHIDADEKKHQNILEQLKESKHH 2258
Cdd:TIGR02168 908 S----KRSELRRELEELREKLAQLELRLEGLEVRID----------NLQERLSeEYSLTLEEAEALENKIEDDEEEARRR 973
|
810
....*....|.
gi 568911612 2259 ADLLKDRVENL 2269
Cdd:TIGR02168 974 LKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
201-1055 |
9.00e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 9.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 201 LHQAKAQNQDLKSKMTELELRLQGQEKEmRSQVNKCQDLQLQLEKTKVELIEKEriLNKTRDEVVRSTAQYDqaaakctT 280
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRRE-REKAERYQALLKEKREYEGYELLKE--KEALERQKEAIERQLA-------S 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 281 LEQKLKTLTEELSCHRQNAESAKRSLEQ---RIKEKEKELQEELSRQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQ 357
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEElnkKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 358 LELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSL 437
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 438 SKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENslTLEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEfe 517
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEE--EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE-- 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 518 tlLSALELKKKECEELKEEKNQISFWKIDSEKLINqieSEKEILLGKINHLetslktQQVSPDSNERIRTLEMERENFTV 597
Cdd:TIGR02169 485 --LSKLQRELAEAEAQARASEERVRGGRAVEEVLK---ASIQGVHGTVAQL------GSVGERYATAIEVAAGNRLNNVV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 598 ---------EIKNLQSMLDSKMVEIKTQKQAYLELQQKSESSDQ---------KHQKEIENMCLKANKLTGQVESLECKL 659
Cdd:TIGR02169 554 veddavakeAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGvigfavdlvEFDPKYEPAFKYVFGDTLVVEDIEAAR 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 660 QLLSsevvtkdqQYQDLRMEYETLRD-------LLKSRGSSLVTNEDNQRSSEDNQR-----------SSEDNQRGSLAF 721
Cdd:TIGR02169 634 RLMG--------KYRMVTLEGELFEKsgamtggSRAPRGGILFSRSEPAELQRLRERleglkrelsslQSELRRIENRLD 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 722 EQQPAVSDSfanvMGRKGSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENL 801
Cdd:TIGR02169 706 ELSQELSDA----SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 802 SKAEQ-IHQNFVAETNQCISKLQEdaaVHQNIVAeTLATLESKEKELQLLKEkleaqqtevqklnknncLLEGTLKELQL 880
Cdd:TIGR02169 782 NDLEArLSHSRIPEIQAELSKLEE---EVSRIEA-RLREIEQKLNRLTLEKE-----------------YLEKEIQELQE 840
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 881 LSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQYKQERLQLL 960
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 961 QRCEETEAVLEDLRGNYKTAQENNAKLECMLSECT--ALCENRKNELEQLKETFAKEQQEF-LTKLAFAEEQNRKLMLEL 1037
Cdd:TIGR02169 921 ELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDvqAELQRVEEEIRALEPVNMLAIQEYeEVLKRLDELKEKRAKLEE 1000
|
890
....*....|....*...
gi 568911612 1038 EIEQQTVRSEITNTNKHS 1055
Cdd:TIGR02169 1001 ERKAILERIEEYEKKKRE 1018
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1723-2374 |
4.46e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 4.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1723 KKVESLLNEIMEADSKLSLQEVQLKMKIAT----CIQLEKIVKDLRKEKADLSEKLEslpcnqEVCLRVERSEEdlgfnl 1798
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEkekeLEEVLREINEISSELPELREELE------KLEKEVKELEE------ 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1799 dmganellskstkdnatntednYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEklclERDTESKQKVIIDLK 1878
Cdd:PRK03918 236 ----------------------LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE----IEELEEKVKELKELK 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1879 ---EELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQREsLRHIGAVESEVKDKADLIQTLSfnvgELT 1955
Cdd:PRK03918 290 ekaEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER-LEELKKKLKELEKRLEELEERH----ELY 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1956 KDKAHLQEQLQNLQNDSQELSlaIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQL 2035
Cdd:PRK03918 365 EEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2036 SSAQEEvHQLRRgIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETL 2115
Cdd:PRK03918 443 RELTEE-HRKEL-LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2116 KAQKDEMTKSLRifelDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKE 2195
Cdd:PRK03918 521 EKKAEEYEKLKE----KLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2196 LREevaaLCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADllKDRVENLEQELIL 2275
Cdd:PRK03918 597 LEP----FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLE 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2276 SEKNMifqaEKSKAEIQTLKSEIQRMAQNLQDLQLEListrsenenlmKELKKEQERVSDLETINSSIENLLKDKEQEKV 2355
Cdd:PRK03918 671 LSREL----AGLRAELEELEKRREEIKKTLEKLKEEL-----------EEREKAKKELEKLEKALERVEELREKVKKYKA 735
|
650
....*....|....*....
gi 568911612 2356 QMKEEAKITVEMLQTQLKE 2374
Cdd:PRK03918 736 LLKERALSKVGEIASEIFE 754
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1956-2706 |
5.14e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.44 E-value: 5.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1956 KDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTIskalevalkekgefavqL 2035
Cdd:pfam15921 103 KQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDM-----------------L 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2036 SSAQEEVHQLRrgieKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSE--NLKAEVE 2113
Cdd:pfam15921 166 EDSNTQIEQLR----KMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEisYLKGRIF 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2114 TLKAQKdEMTKSLRIFELDLVtVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQL 2193
Cdd:pfam15921 242 PVEDQL-EALKSESQNKIELL-LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2194 KELREEVAALCND-QETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKesKHHADLLKDRVE-NLEQ 2271
Cdd:pfam15921 320 SDLESTVSQLRSElREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ--KLLADLHKREKElSLEK 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2272 ElilSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLM-KELKKEQERVSDLETINSSIENLLKDK 2350
Cdd:pfam15921 398 E---QNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMeRQMAAIQGKNESLEKVSSLTAQLESTK 474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2351 EQEKVQMKE--EAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQtLELEKAQLLQDLGEaknkyiifqsSV 2428
Cdd:pfam15921 475 EMLRKVVEEltAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVD-LKLQELQHLKNEGD----------HL 543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2429 NALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQklelrnvtmaLEQKVQVLQSENNTLQSTY 2508
Cdd:pfam15921 544 RNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ----------LEKEINDRRLELQEFKILK 613
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2509 EALQNSHKSLESELGLIKLEKVALVERVStisgkeaELQRELRDMLQKTTQLSEDYN---KEKNRLTEEVEVLREELQNT 2585
Cdd:pfam15921 614 DKKDAKIRELEARVSDLELEKVKLVNAGS-------ERLRAVKDIKQERDQLLNEVKtsrNELNSLSEDYEVLKRNFRNK 686
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2586 KAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKelsqlEAAQQQRAGSLVDSNVDEVMTENKALKETLEEKV 2665
Cdd:pfam15921 687 SEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMK-----VAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 568911612 2666 KEAD--KYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQ 2706
Cdd:pfam15921 762 KEKHflKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKE 804
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2396-2715 |
5.77e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 5.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2396 LGSQVQTLEL--EKAQLLQDLGEAKNKYiifqssvnaltqEVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcKLAQVEGEQ 2473
Cdd:COG1196 198 LERQLEPLERqaEKAERYRELKEELKEL------------EAELLLLKLRELEAELEELEAELEELEA---ELEELEAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2474 QLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDM 2553
Cdd:COG1196 263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2554 LQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAhLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEA 2633
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2634 AQQQRAgslvdSNVDEVMTENKALKETLEEKVKEADKYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQDLQSSPL 2713
Cdd:COG1196 422 ELEELE-----EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
..
gi 568911612 2714 LN 2715
Cdd:COG1196 497 LE 498
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1842-2447 |
7.31e-09 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 61.84 E-value: 7.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1842 IEHHILSVE-----TNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKI 1916
Cdd:PRK01156 117 IEKNILGISkdvflNSIFVGQGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSN 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1917 EELESHQREslrhIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQElslaIGELEIQIGQLNKEKESL 1996
Cdd:PRK01156 197 LELENIKKQ----IADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDM----KNRYESEIKTAESDLSME 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1997 VKESqnfqIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKhLSAVAKLKESQRE 2076
Cdd:PRK01156 269 LEKN----NYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKK-LSVLQKDYNDYIK 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2077 SDSLKDTVETLERELERSEENQELAILDSENLKAEVE----TLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQS 2152
Cdd:PRK01156 344 KKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEeyskNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2153 RVSELDERCSSLRRLLEEKEQARVQME---------------------EDSKSAMLMLQMQLKELREEVAALCNDQETLK 2211
Cdd:PRK01156 424 KVSSLNQRIRALRENLDELSRNMEMLNgqsvcpvcgttlgeeksnhiiNHYNEKKSRLEEKIREIEIEVKDIDEKIVDLK 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2212 AQEQSLDqpGEEVHHLKSSIRKLKvHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQElILSEKNMIF---QAEKSK 2288
Cdd:PRK01156 504 KRKEYLE--SEEINKSINEYNKIE-SARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLE-DLDSKRTSWlnaLAVISL 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2289 AEIQTLKSEIQRMAQNLQDLQlelistrsenenlmkelKKEQERVSDLETINSSIENLLKDKEQE------KVQMKEEAK 2362
Cdd:PRK01156 580 IDIETNRSRSNEIKKQLNDLE-----------------SRLQEIEIGFPDDKSYIDKSIREIENEannlnnKYNEIQENK 642
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2363 ITVEMLQTQLKELNETVV---SLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGK 2439
Cdd:PRK01156 643 ILIEKLRGKIDNYKKQIAeidSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDIN 722
|
....*...
gi 568911612 2440 QKLEKGEK 2447
Cdd:PRK01156 723 ETLESMKK 730
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1717-2379 |
1.03e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1717 EVEDWDKKVESLLNEIMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSEKLeslpcnqevcLRVERSEEDLGF 1796
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKL----------KKNKDKINKLNS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1797 NLDMGANELLSKSTKDNATNTE-DNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVII 1875
Cdd:TIGR04523 104 DLSKINSEIKNDKEQKNKLEVElNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1876 DLKEELFTVISERNRLREELDNVskesKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELT 1955
Cdd:TIGR04523 184 NIQKNIDKIKNKLLKLELLLSNL----KKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLK 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1956 KDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTiskalevalKEKGEFAVQL 2035
Cdd:TIGR04523 260 DEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQE---------KKLEEIQNQI 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2036 SSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQREsdslkdtVETLERELERSEENQELAILDSENLKAEVETL 2115
Cdd:TIGR04523 331 SQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE-------IEKLKKENQSYKQEIKNLESQINDLESKIQNQ 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2116 KAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKE 2195
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2196 LREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELIL 2275
Cdd:TIGR04523 484 LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEI 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2276 SEKNMifQAEKSKAEIQTLKS---EIQRMAQNLQDLQLELISTRSENE----NLMKELKKEQERVSDLETINSSIENLLK 2348
Cdd:TIGR04523 564 DEKNK--EIEELKQTQKSLKKkqeEKQELIDQKEKEKKDLIKEIEEKEkkisSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
650 660 670
....*....|....*....|....*....|.
gi 568911612 2349 DKEQEKVQMKEEAKITVEMLQTQLKELNETV 2379
Cdd:TIGR04523 642 KLKQEVKQIKETIKEIRNKWPEIIKKIKESK 672
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1885-2709 |
1.20e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 61.22 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1885 ISERNRLREELDNV---SKESKALDQMSKKMKEKIEELESHQRES--LRHIGAVESEVKDKADLIQTLSFNVGELTKDKA 1959
Cdd:TIGR00606 165 LSEGKALKQKFDEIfsaTRYIKALETLRQVRQTQGQKVQEHQMELkyLKQYKEKACEIRDQITSKEAQLESSREIVKSYE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1960 HLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTE----SECEKQTISKALEVALKEKGEFAVQL 2035
Cdd:TIGR00606 245 NELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKvfqgTDEQLNDLYHNHQRTVREKERELVDC 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2036 SSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELE-RSEENQELAILDSENLKAEVET 2114
Cdd:TIGR00606 325 QRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGfERGPFSERQIKNFHTLVIERQE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2115 LKA----------QKDEMTKSLRIFELDL------VTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQM 2178
Cdd:TIGR00606 405 DEAktaaqlcadlQSKERLKQEQADEIRDekkglgRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2179 EEDSKsamLMLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILeqlKESKHH 2258
Cdd:TIGR00606 485 RELSK---AEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIR---KIKSRH 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2259 ADLLKDRVENLEQELILSEKnmifqaekskaeIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLE- 2337
Cdd:TIGR00606 559 SDELTSLLGYFPNKKQLEDW------------LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEd 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2338 ---------TINSSIENLLKDKEQEKVQMKEEAKITVEMLQ--TQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELE 2406
Cdd:TIGR00606 627 klfdvcgsqDEESDLERLKEEIEKSSKQRAMLAGATAVYSQfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRL 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2407 KAQLLQDLGEAKNKyiiFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQlwqkqklELRNV 2486
Cdd:TIGR00606 707 APDKLKSTESELKK---KEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQE-------TLLGT 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2487 TMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGliKLEKVALVERVSTISGKEAELQRELRDMLQK---TTQLSED 2563
Cdd:TIGR00606 777 IMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAA--KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKielNRKLIQD 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2564 YNKEKNRLTEEVEVLREELQNTkAAHLKSVNQLEKELQRaqgKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLV 2643
Cdd:TIGR00606 855 QQEQIQHLKSKTNELKSEKLQI-GTNLQRRQQFEEQLVE---LSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568911612 2644 DSNVDEVMTENKA--LKETLEEKV---KEADKYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQDLQ 2709
Cdd:TIGR00606 931 SKETSNKKAQDKVndIKEKVKNIHgymKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMR 1001
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
209-487 |
1.28e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 209 QDLKSKMTELE-----LRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLEQ 283
Cdd:COG1196 216 RELKEELKELEaelllLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 284 KLKTLTEELSCHRQNAESAKRSLEQrikekEKELQEELSRQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQLELEKV 363
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEE-----LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 364 TSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNF 443
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 568911612 444 AEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEKLKLALADLERQ 487
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2280-2522 |
1.76e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.39 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2280 MIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKE 2359
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2360 EAKITVEMLQTQLKELNETVVSLcndqevsktkeQNLGSQVQTLELEKAqllQDLGEAKNKYIIFQSSVNALTQEVEAGK 2439
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRAL-----------YRLGRQPPLALLLSP---EDFLDAVRRLQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2440 QKLEKGEKEIRTLKEQLKSQEQLvckLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLE 2519
Cdd:COG4942 157 ADLAELAALRAELEAERAELEAL---LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
...
gi 568911612 2520 SEL 2522
Cdd:COG4942 234 AEA 236
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
331-935 |
1.78e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.42 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 331 LDSEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIrlklSRAEQalQASQVAENELRRSSEEMKKENS 410
Cdd:TIGR04523 80 LEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVEL----NKLEK--QKKENKKNIDKFLTEIKKKEKE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 411 LIRSQSEQRT--REVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKlNQQENSLTLEklklaLADLERQR 488
Cdd:TIGR04523 154 LEKLNNKYNDlkKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKK-IQKNKSLESQ-----ISELKKQN 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 489 NCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQISFWKIDSEKLINQIESEKEILLGK---- 564
Cdd:TIGR04523 228 NQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqd 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 565 -INHLETSLKTQQVSPD--------SNERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYlelqQKSESSDQKHQ 635
Cdd:TIGR04523 308 wNKELKSELKNQEKKLEeiqnqisqNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEI----EKLKKENQSYK 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 636 KEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLlKSRGSSLVTNEDNQRSSEDNQRSSEDNQ 715
Cdd:TIGR04523 384 QEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET-IIKNNSEIKDLTNQDSVKELIIKNLDNT 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 716 RGSLafEQQPAVSdsfanvmgrKGSINSERSDcsvdggrspehIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKG 795
Cdd:TIGR04523 463 RESL--ETQLKVL---------SRSINKIKQN-----------LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS 520
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 796 EVEENLSKAEqihqNFVAETNQCISKLQEDaavhqnivaetLATLESKEKELQLLKEKLEAQQtEVQKLNKNNCLLEGTL 875
Cdd:TIGR04523 521 SLKEKIEKLE----SEKKEKESKISDLEDE-----------LNKDDFELKKENLEKEIDEKNK-EIEELKQTQKSLKKKQ 584
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 876 KELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKIT 935
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
218-497 |
2.38e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 2.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 218 LELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLEQKLKTLTEELSCHRQ 297
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 298 ---NAESAKRSLEQRIKEKEKELQEELSRQHQSFQALDSEYTQMKtRLTQELQQVKHLHSTLQLELEKVTSVKQQLERNL 374
Cdd:COG1196 296 elaRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE-ELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 375 EEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQ 454
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568911612 455 EIMLRDLQEKLNQQENSLTLEKLKLALADLERQRNCSQDLLKK 497
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
198-465 |
3.04e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 3.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 198 AQLLHQAKAQNQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAK 277
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 278 CTTLEQKLKTLTEELschrQNAESAKRSLEQRIKEKEKELQEELSRQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQ 357
Cdd:COG1196 332 LEELEEELEELEEEL----EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 358 LElekvtsvkQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSL 437
Cdd:COG1196 408 AE--------EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
250 260
....*....|....*....|....*...
gi 568911612 438 SKSQNFAEEMKAKNTSQEIMLRDLQEKL 465
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2069-2691 |
3.09e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 3.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2069 KLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQ 2148
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2149 EKQSRVSELDERCSSLRRLLEE--KEQARVQMEEDSKSAML-MLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVH 2225
Cdd:TIGR04523 114 NDKEQKNKLEVELNKLEKQKKEnkKNIDKFLTEIKKKEKELeKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2226 HLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELilSEKNMIFQaeKSKAEIQTLKSEIQRMAQNL 2305
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEI--NEKTTEIS--NTQTQLNQLKDEQNKIKKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2306 QDLQLELISTRSENENLMKELKKEQERVSDLE---------TINSSIENLLKDKEQEKVQMKEEAKI------TVEMLQT 2370
Cdd:TIGR04523 270 SEKQKELEQNNKKIKELEKQLNQLKSEISDLNnqkeqdwnkELKSELKNQEKKLEEIQNQISQNNKIisqlneQISQLKK 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2371 QLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIR 2450
Cdd:TIGR04523 350 ELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2451 TLKEQLKSQEQLVCKLAQVEGEQQLWQKqklELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEK- 2529
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQDSVKELIIK---NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKk 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2530 ------VALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNqleKELQRA 2603
Cdd:TIGR04523 507 eleekvKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQ---KSLKKK 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2604 QGKIKLMLKscrQLEGEKEMLQKELSQLEAAQQQragslVDSNVDEVMTENKALkETLEEKVKEADKYLDKYCSLLisHE 2683
Cdd:TIGR04523 584 QEEKQELID---QKEKEKKDLIKEIEEKEKKISS-----LEKELEKAKKENEKL-SSIIKNIKSKKNKLKQEVKQI--KE 652
|
....*...
gi 568911612 2684 ELEKAKEI 2691
Cdd:TIGR04523 653 TIKEIRNK 660
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1886-2690 |
4.90e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.21 E-value: 4.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1886 SERNRLREELdNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADL-----IQTLSFNVGELTKDKAH 1960
Cdd:pfam02463 153 ERRLEIEEEA-AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKAleyyqLKEKLELEEEYLLYLDY 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1961 LQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESL------------VKESQNFQIKLTESECEKQTISKALEVALKEK 2028
Cdd:pfam02463 232 LKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLaqvlkenkeeekEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2029 GEFAVQLSSAQEEVHQ----------LRRGIEKLSVRI----EADEKKHLSAVAKLKESQRESDSLKDTVETLERELERS 2094
Cdd:pfam02463 312 DEEKLKESEKEKKKAEkelkkekeeiEELEKELKELEIkreaEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2095 EENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQA 2174
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2175 RVQMEEDSKSAMLMLQMQLKE--LREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQL 2252
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRqkLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2253 KESKHHADLLKDRVENLEQELILSEKN-MIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSEN--ENLMKELKKE 2329
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARkLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDkrAKVVEGILKD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2330 QERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQ 2409
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2410 LLQDLGEAKNKYIIFQSSV--------NALTQEVEAGKQKLEKGEKEiRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKL 2481
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAqdkineelKLLKQKIDEEEEEEEKSRLK-KEEKEEEKSELSLKEKELAEEREKTEKLKVEE 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2482 ELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLiKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLs 2561
Cdd:pfam02463 791 EKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEE-ELEELALELKEEQKLEKLAEEELERLEEEITKEEL- 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2562 edynKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQ---------GKIKLMLKSCRQLEGEKEMLQKELSQLE 2632
Cdd:pfam02463 869 ----LQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQklnlleekeNEIEERIKEEAEILLKYEEEPEELLLEE 944
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 568911612 2633 AAQQQRAGSLVDSNVDEVMTENKALKETLEEKVKEADKYLDKYCSLLISHEELEKAKE 2690
Cdd:pfam02463 945 ADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2046-2360 |
4.98e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 4.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2046 RRGIEKLSVRIEADEKKHlSAVAKLKESQRESDSLKDTVEtlerelersEENQELAILDSENLKAE-VETLKAQKDE--- 2121
Cdd:TIGR02169 156 RKIIDEIAGVAEFDRKKE-KALEELEEVEENIERLDLIID---------EKRQQLERLRREREKAErYQALLKEKREyeg 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2122 --MTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDS----KSAMLMLQMQLKE 2195
Cdd:TIGR02169 226 yeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEqlrvKEKIGELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2196 LREEVAALCNDQETLKAQEQSLDqpgEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQEL-I 2274
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLE---AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFaE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2275 LSEKNMIFQAEKSKA---------EIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIEN 2345
Cdd:TIGR02169 383 TRDELKDYREKLEKLkreinelkrELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA 462
|
330
....*....|....*
gi 568911612 2346 LLKDKEQEKVQMKEE 2360
Cdd:TIGR02169 463 DLSKYEQELYDLKEE 477
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2396-2703 |
7.17e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 7.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2396 LGSQVQTLEL--EKAQLLQDLGEAK---------NKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLksqEQLVC 2464
Cdd:TIGR02168 198 LERQLKSLERqaEKAERYKELKAELrelelallvLRLEELREELEELQEELKEAEEELEELTAELQELEEKL---EELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2465 KLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTI----- 2539
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELkeele 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2540 --SGKEAELQRELRDMLQKTTQLSEDYNKEKNRLteevevlreelqntkAAHLKSVNQLEKELQRaqgkiklmlkscrqL 2617
Cdd:TIGR02168 355 slEAELEELEAELEELESRLEELEEQLETLRSKV---------------AQLELQIASLNNEIER--------------L 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2618 EGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEEKVKEADKYLDKYCSLLISHEELEKAKEILEIEVA 2697
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
....*.
gi 568911612 2698 RLKSRQ 2703
Cdd:TIGR02168 486 QLQARL 491
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
2105-2662 |
8.25e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 8.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2105 SENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEE---- 2180
Cdd:PRK02224 201 EKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREElaee 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2181 --DSKSAMLMLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEvhhLKSSIRKLKVHIDADEKKHQNILEQLKESKHH 2258
Cdd:PRK02224 281 vrDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEE---LRDRLEECRVAAQAHNEEAESLREDADDLEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2259 ADLLKDRVENLEQELILSEKnmifQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLET 2338
Cdd:PRK02224 358 AEELREEAAELESELEEARE----AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2339 INSSIENLLKDKEqekvQMKEEAKITVemlQTQLKELNETVVSLCNDQEvsktkeqnlgsQVQTLELEKAQLlqdlgeak 2418
Cdd:PRK02224 434 TLRTARERVEEAE----ALLEAGKCPE---CGQPVEGSPHVETIEEDRE-----------RVEELEAELEDL-------- 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2419 nkyiifQSSVNALTQEVEAGKQkLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLwqkQKLELRNVTMALEQKVQVLQ 2498
Cdd:PRK02224 488 ------EEEVEEVEERLERAED-LVEAEDRIERLEERREDLEELIAERRETIEEKRE---RAEELRERAAELEAEAEEKR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2499 SENNTLQSTYEALQNSHKSLESELGLIKLEKVALvERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVL 2578
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2579 REELQNTKAAhlkSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRagslvdsnvDEVMTENKALK 2658
Cdd:PRK02224 637 RELEAEFDEA---RIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL---------EELRERREALE 704
|
....
gi 568911612 2659 ETLE 2662
Cdd:PRK02224 705 NRVE 708
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
239-423 |
9.64e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 57.72 E-value: 9.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 239 LQLQLEKTKVELIEKERILNKTRDE--VVRSTAQYDQAAAKCTTLEQKLKTLTEELschrQNAESAKRSLEQRIKEKEKE 316
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAEL----AEAEARLAALRAQLGSGPDA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 317 LQEELsrQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIrlkLSRAEQALQASQVAEN 396
Cdd:COG3206 256 LPELL--QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRI---LASLEAELEALQAREA 330
|
170 180 190
....*....|....*....|....*....|
gi 568911612 397 ELRRSSEEMKKE-NSLIRSQSEQR--TREV 423
Cdd:COG3206 331 SLQAQLAQLEARlAELPELEAELRrlEREV 360
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
281-512 |
1.70e-07 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 57.17 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 281 LEQKLKTLTEELSCHRQNaesaKRSLEQRIKEKEKELQEELSrqhqSFQALDSEYTQMKTRL-------TQELQQVKHLH 353
Cdd:pfam09726 400 LEQDIKKLKAELQASRQT----EQELRSQISSLTSLERSLKS----ELGQLRQENDLLQTKLhnavsakQKDKQTVQQLE 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 354 STLQLELEKVTSVKQQLErnlEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKV 433
Cdd:pfam09726 472 KRLKAEQEARASAEKQLA---EEKKRKKEEEATAARAVALAAASRGECTESLKQRKRELESEIKKLTHDIKLKEEQIREL 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 434 KVSLSKSQNFAEemKAKNTsqEIMLRDL---QEKLNQQENSLTLE-KLKL----ALADLERQRNCSQDLLKKREHHIDQL 505
Cdd:pfam09726 549 EIKVQELRKYKE--SEKDT--EVLMSALsamQDKNQHLENSLSAEtRIKLdlfsALGDAKRQLEIAQGQIYQKDQEIKDL 624
|
....*..
gi 568911612 506 NNKLNKI 512
Cdd:pfam09726 625 KQKIAEV 631
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
474-1235 |
3.32e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 474 LEKLKLALADLERQRNCSQDLLKK----REHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQisfwkidSEK 549
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKELkaelRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE-------LEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 550 LINQIESEKEILLGKINHLETSLKtqqvspDSNERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSES 629
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELY------ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 630 SdqkhQKEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLLKSRGSSLVTNEDNQRSSEDNQR 709
Cdd:TIGR02168 342 L----EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 710 SSEDNQRGSLAFEQQPAVSDSFANVMGRKGSIN---SERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMR 786
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEelqEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 787 CEELLQIKGEVEENLSKAEQIHQ---------NFVAETNQCISK-LQEDAavhQNIVAEtlaTLESKEKELQLLKEK--- 853
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGLSGilgvlseliSVDEGYEAAIEAaLGGRL---QAVVVE---NLNAAKKAIAFLKQNelg 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 854 ----LEAQQTEVQKLNKNNCL----LEGTLKELQLLSDTLSSEKKEMNSIISLSKKnIEELTQANEALKEVNEA-----L 920
Cdd:TIGR02168 572 rvtfLPLDSIKGTEIQGNDREilknIEGFLGVAKDLVKFDPKLRKALSYLLGGVLV-VDDLDNALELAKKLRPGyrivtL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 921 EQEKMN----LLQKHEKITSCIAEQERSIAELSdqykQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSECTA 996
Cdd:TIGR02168 651 DGDLVRpggvITGGSAKTNSSILERRREIEELE----EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 997 LCENRKNELEQLKETFAKEQQEFltklafaeEQNRKLMLELEIEQQTVRSEITNTNKHSMSATDGLRQECLTLNEEQNEQ 1076
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERI--------AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1077 QNEVSNLTHENEQLMELTQTKHDSYLAVEPVENSVKATEDEIGKSSSQyqmdIDTKDISLDSYKAQLVHLEALVRILEVQ 1156
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ----IEELSEDIESLAAEIEELEELIEELESE 874
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568911612 1157 LDQSEEENKKLHLELQTIREELETKSSQdpqsqartglkdCDTAEEKYVSMLQELSASQNENAHLQCSLQTAVNKLNEL 1235
Cdd:TIGR02168 875 LEALLNERASLEEALALLRSELEELSEE------------LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1816-2409 |
4.66e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 4.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1816 NTEDNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLcleRDTESKQKVIIDLK--------EELFTVISE 1887
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA---KKAEEKKKADEAKKkaeeakkaDEAKKKAEE 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1888 RNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIqtlsfnvgeltKDKAHLQEQLQN 1967
Cdd:PTZ00121 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA-----------KKKAEEKKKADE 1395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1968 LQNDSQElslaigeleiqigqlNKEKESLVKESQNFQIKLTESECEKQTISKALEvaLKEKGEFAVQLSSAQEEVHQLRR 2047
Cdd:PTZ00121 1396 AKKKAEE---------------DKKKADELKKAAAAKKKADEAKKKAEEKKKADE--AKKKAEEAKKADEAKKKAEEAKK 1458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2048 GIEklsVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEV-----ETLKAQK--- 2119
Cdd:PTZ00121 1459 AEE---AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEakkadEAKKAEEakk 1535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2120 -DEMTKSLRIFELDLVTvRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKELRE 2198
Cdd:PTZ00121 1536 aDEAKKAEEKKKADELK-KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2199 EVAALCNDQETLKAQE------QSLDQPGEEV---HHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENL 2269
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEekkkveQLKKKEAEEKkkaEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2270 EQEliLSEKNMIFQAEKSKAEiQTLKSEIQRMAQNLQDLQLELISTRSENENL-MKELKKEQ-----------ERVSDLE 2337
Cdd:PTZ00121 1695 KKE--AEEAKKAEELKKKEAE-EKKKAEELKKAEEENKIKAEEAKKEAEEDKKkAEEAKKDEeekkkiahlkkEEEKKAE 1771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2338 TINSSIENLLK---DKEQEKVQMKEEAKI-----TVEMLQTQLKElNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQ 2409
Cdd:PTZ00121 1772 EIRKEKEAVIEeelDEEDEKRRMEVDKKIkdifdNFANIIEGGKE-GNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE 1850
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
821-1117 |
5.20e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 5.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 821 KLQEDAAVHQNIVAetLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSK 900
Cdd:COG1196 217 ELKEELKELEAELL--LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 901 KNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELsdqyKQERLQLLQRCEETEAVLEDLRGNYKTA 980
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL----EEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 981 QENNAKLEcmlsecTALCENRKNELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEITNTNKHSMSATD 1060
Cdd:COG1196 371 EAELAEAE------EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 568911612 1061 G-LRQECLTLNEEQNEQQNEVSNLTHENEQLMELTQTKHDSYLAVEPVENSVKATEDE 1117
Cdd:COG1196 445 EeAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2285-2704 |
1.46e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2285 EKSKAEIQTLKSEIQRMAQNLQDLqlelISTRSENENLMKELKKEQERVsdLETINSsIENLLKDKEqEKVQMKEEAKIT 2364
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKF----IKRTENIEELIKEKEKELEEV--LREINE-ISSELPELR-EELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2365 VEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLEL------EKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAG 2438
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKeieeleEKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2439 KQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEqKVQVLQSENNTLQSTYEALqnSHKSL 2518
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGL--TPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2519 ESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKnrlTEEVEVLREELQNTKAAHLKSVNQLEK 2598
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCP---VCGRELTEEHRKELLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2599 ELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRA--GSLVDSNVDEVMTENKALkETLEEKVKEADKYLDKYC 2676
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEleEKLKKYNLEELEKKAEEY-EKLKEKLIKLKGEIKSLK 545
|
410 420
....*....|....*....|....*...
gi 568911612 2677 SLLISHEELEKAKEILEIEVARLKSRQS 2704
Cdd:PRK03918 546 KELEKLEELKKKLAELEKKLDELEEELA 573
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2015-2500 |
1.60e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2015 QTISKALEVALKEKGEFAVQLSSAQEEvhqlRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERS 2094
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2095 EENQELAILDSENLKAEVETLKAQKDEMTKSlrifeldlvtvrterENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQA 2174
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKA---------------DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKA 1427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2175 rvqmEEDSKSAMLMLQMQLKELREEVAAlcNDQETLKAQEqsLDQPGEEVHHLKSSIRKLKVHIDADEKKhqnilEQLKE 2254
Cdd:PTZ00121 1428 ----EEKKKADEAKKKAEEAKKADEAKK--KAEEAKKAEE--AKKKAEEAKKADEAKKKAEEAKKADEAK-----KKAEE 1494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2255 SKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQlELisTRSENENLMKELKKEQERVS 2334
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD-EL--KKAEELKKAEEKKKAEEAKK 1571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2335 DLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKE-QNLGSQVQTLELEKAQLLQD 2413
Cdd:PTZ00121 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEeKKKVEQLKKKEAEEKKKAEE 1651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2414 LGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQK 2493
Cdd:PTZ00121 1652 LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731
|
....*..
gi 568911612 2494 VQVLQSE 2500
Cdd:PTZ00121 1732 AEEAKKE 1738
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
788-1056 |
2.50e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 788 EELLQIKGEVEENLSKAEQIHQNfVAETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKn 867
Cdd:COG1196 246 AELEELEAELEELEAELAELEAE-LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE- 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 868 ncllegtlkELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAE 947
Cdd:COG1196 324 ---------ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 948 LSDQyKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLEcmlsectALCENRKNELEQLKETFAKEQQEFLTKLAFAE 1027
Cdd:COG1196 395 AAEL-AAQLEELEEAEEALLERLERLEEELEELEEALAELE-------EEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260
....*....|....*....|....*....
gi 568911612 1028 EQNRKLMLELEIEQQTVRSEITNTNKHSM 1056
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
201-422 |
2.61e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 2.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 201 LHQAKAQNQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTT 280
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 281 LEQKLKTLTEELSchRQNAESAKRSLEQRIKEKEKELQEELS-RQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQLE 359
Cdd:COG4942 95 LRAELEAQKEELA--ELLRALYRLGRQPPLALLLSPEDFLDAvRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568911612 360 LEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTRE 422
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
1822-1921 |
2.74e-06 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 49.22 E-value: 2.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1822 KEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKE 1901
Cdd:pfam10473 2 EKKQLHVLEKLKESERKADSLKDKVENLERELEMSEENQELAILEAENSKAEVETLKAEIEEMAQNLRDLELDLVTLRSE 81
|
90 100
....*....|....*....|
gi 568911612 1902 SKALDQMSKKMKEKIEELES 1921
Cdd:pfam10473 82 KENLTKELQKKQERVSELES 101
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
806-1259 |
2.82e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 2.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 806 QIHQNFVAETNQCISKLQEDAavhQNIVAETLATLESKEkelQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQ-LLSDT 884
Cdd:pfam15921 123 QMERDAMADIRRRESQSQEDL---RNQLQNTVHELEAAK---CLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRsILVDF 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 885 LSSEKKEMNSIISLSKKNIEELTQA-NEALKEVN-----------------EALEQEKMN----LLQKHE-KITSCIAEQ 941
Cdd:pfam15921 197 EEASGKKIYEHDSMSTMHFRSLGSAiSKILRELDteisylkgrifpvedqlEALKSESQNkielLLQQHQdRIEQLISEH 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 942 ERSIAELSDQYKQERLQLLQRCEETEAVLEDlrgnyktAQENNAKLECMLSECTALCENRKNELEQLKETFAKEQQEFLT 1021
Cdd:pfam15921 277 EVEITGLTEKASSARSQANSIQSQLEIIQEQ-------ARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEK 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1022 KLAFAEEQnrklMLELEIEQQTVRSEITNTNKHSMSATDGLRQECLTLNEEQNEQQNEVSNLTHENEQLMELTQTKHDSY 1101
Cdd:pfam15921 350 QLVLANSE----LTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRN 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1102 LAVEPVENSVKATEDEIGKSSSQYQMDIDTKDISLDSYKAQLVHLEALVRIL----------EVQLDQSEEENKKLHLEL 1171
Cdd:pfam15921 426 MEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLrkvveeltakKMTLESSERTVSDLTASL 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1172 QTIREELETKSSQDPQSQARTGLKdcdtaeekyvsmLQELSASQNENAHLQ-----CS---------------LQTAVNK 1231
Cdd:pfam15921 506 QEKERAIEATNAEITKLRSRVDLK------------LQELQHLKNEGDHLRnvqteCEalklqmaekdkvieiLRQQIEN 573
|
490 500 510
....*....|....*....|....*....|..
gi 568911612 1232 LNEL----GKMCDVLRVEKLQLESELNDSRTE 1259
Cdd:pfam15921 574 MTQLvgqhGRTAGAMQVEKAQLEKEINDRRLE 605
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
2034-2610 |
3.28e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 52.82 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2034 QLSSAQEEVHQLRrgIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVE 2113
Cdd:pfam05557 10 RLSQLQNEKKQME--LEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2114 TLKAQKDEMTKSLRIFEL------DLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSaML 2187
Cdd:pfam05557 88 LNKKLNEKESQLADAREVisclknELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSS-LA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2188 MLQMQLKELREEVAALCNDQETLKAQEQSLdqpgEEVHHLKSSIRKLKVHIdadekkhqnilEQLKESKHHADLLKDRVE 2267
Cdd:pfam05557 167 EAEQRIKELEFEIQSQEQDSEIVKNSKSEL----ARIPELEKELERLREHN-----------KHLNENIENKLLLKEEVE 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2268 NLEQELilseknmiFQAEKSKAEIQTLKSEIQRMAQNL-------QDLQLELIS---TRSENENLMKELKKEQERVSDLE 2337
Cdd:pfam05557 232 DLKRKL--------EREEKYREEAATLELEKEKLEQELqswvklaQDTGLNLRSpedLSRRIEQLQQREIVLKEENSSLT 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2338 TINSSIENLLKDKEQEKVQMK---EEAKITVEMLQTQLKELNETVVSLCNDQEVSKT------KEQNLGSQVQTLELEKA 2408
Cdd:pfam05557 304 SSARQLEKARRELEQELAQYLkkiEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAilesydKELTMSNYSPQLLERIE 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2409 QLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKlaqvEGEQQLWQK-QKLELRNVT 2487
Cdd:pfam05557 384 EAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSK----EEVDSLRRKlETLELERQR 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2488 MALEQKVQVLQSENNTLQSTYEalQNSHKSLESElgliklekvalvervstiSGKEAELQRELRDMLQKTTQLSEDYNKE 2567
Cdd:pfam05557 460 LREQKNELEMELERRCLQGDYD--PKKTKVLHLS------------------MNPAAEAYQQRKNQLEKLQAEIERLKRL 519
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 568911612 2568 KNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLM 2610
Cdd:pfam05557 520 LKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELKNQRL 562
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2398-2634 |
3.41e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 3.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2398 SQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcKLAQVEGEQQLWQ 2477
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA---ELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2478 KQKLELRNvtmALEQKVQVLQSENNtlQSTYEALQNSHKSLESELGLIKLEKV--ALVERVSTISGKEAELQRELRDMLQ 2555
Cdd:COG4942 97 AELEAQKE---ELAELLRALYRLGR--QPPLALLLSPEDFLDAVRRLQYLKYLapARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568911612 2556 KTTQLSEDYNKEKNRLTEEvevlreelQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAA 2634
Cdd:COG4942 172 ERAELEALLAELEEERAAL--------EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2106-2727 |
4.77e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 4.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2106 ENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQS---RVSELDERCSSLRRLLEEK--EQARVQMEE 2180
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAdelKKAEEKKKADEAKKAEEKKkaDEAKKKAEE 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2181 DSKSAMLMLQMQLKELREEvAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVH--IDADEKKHQNILEQLKESKHH 2258
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKAD-AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAekKKEEAKKKADAAKKKAEEKKK 1392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2259 ADLLKDRVENLEQElilSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDlqlelistRSENENLMKELKKEQERVSDLET 2338
Cdd:PTZ00121 1393 ADEAKKKAEEDKKK---ADELKKAAAAKKKADEAKKKAEEKKKADEAKK--------KAEEAKKADEAKKKAEEAKKAEE 1461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2339 INSSIENLLKDKEQEKvqmKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQvqtlELEKAQLLQDLGEAK 2418
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKK---KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE----EAKKADEAKKAEEAK 1534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2419 nkyiifqssvnaltQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLE-LRNVTMALEQKVQVL 2497
Cdd:PTZ00121 1535 --------------KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEeAKKAEEARIEEVMKL 1600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2498 QSEnntlqstyEALQNSHKSLESELGLIKLEKVALVERVSTisgKEAELQRELRDMLQKTTQLSEDynKEKNRLTEEVEV 2577
Cdd:PTZ00121 1601 YEE--------EKKMKAEEAKKAEEAKIKAEELKKAEEEKK---KVEQLKKKEAEEKKKAEELKKA--EEENKIKAAEEA 1667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2578 LREELQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTENKAL 2657
Cdd:PTZ00121 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2658 KETLEEKVKEADKYLDKycsllishEELEKAKEILEIEVARLKSRQSRQDLQSSPLLNSSIPGPSPNTSV 2727
Cdd:PTZ00121 1748 EAKKDEEEKKKIAHLKK--------EEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN 1809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
7-659 |
5.55e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 5.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 7 LEKSRQKLSHELQVKESQVNLQESQLSSCKKQIEKLEQELKRCKSEFERSQQVAQSADVSL-NPCSTPQKLFATPLTPSS 85
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLaNLERQLEELEAQLEELES 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 86 TYEDLKEKYNKEVEERKRLEEEVKALHAK----KVSLPVSQATMNHRDIARHQASSSVFPWQQE-----NTPSRLSSDAL 156
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELESLEAEleelEAELEELESRLEELEEQLETLRSKVAQLELQiaslnNEIERLEARLE 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 157 KTPLRRDGSAAHFLGEEVSPNKSSMKTGRGDCSSLPGEPHSAQL----LHQAKAQNQDLKSKMTELELRLQGQEKEMRSQ 232
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEelerLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 233 VNKCQDLQLQLE---KTKVELIEKERILNKTRD---EVVRSTAQYDQAAAkcTTLEQKL-KTLTEELSCHRQNAESAKRS 305
Cdd:TIGR02168 491 LDSLERLQENLEgfsEGVKALLKNQSGLSGILGvlsELISVDEGYEAAIE--AALGGRLqAVVVENLNAAKKAIAFLKQN 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 306 LEQR--------IKEKEKELQEELSRQHQSFQ---ALDSEYTQMK---------------TRLTQELQQVKHLHS----- 354
Cdd:TIGR02168 569 ELGRvtflpldsIKGTEIQGNDREILKNIEGFlgvAKDLVKFDPKlrkalsyllggvlvvDDLDNALELAKKLRPgyriv 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 355 TLQLEL-----------EKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREV 423
Cdd:TIGR02168 649 TLDGDLvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 424 CHLEEELGKVKvslSKSQNFAEEMkaknTSQEIMLRDLQEKLNQQEnsLTLEKLKLALADLERQRncsqdllKKREHHID 503
Cdd:TIGR02168 729 SALRKDLARLE---AEVEQLEERI----AQLSKELTELEAEIEELE--ERLEEAEEELAEAEAEI-------EELEAQIE 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 504 QLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQISFWKIDSEKLINQIESEKEILLGKINHLETSLKTQQVSPD-SN 582
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEeLE 872
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568911612 583 ERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSESSdqkhQKEIENMCLKANKLTGQVESLECKL 659
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL----REKLAQLELRLEGLEVRIDNLQERL 945
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2212-2420 |
5.71e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 5.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2212 AQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNM---IFQAEKSK 2288
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELaelEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2289 AEIQTLKSEIQRM------------------AQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDK 2350
Cdd:COG4942 97 AELEAQKEELAELlralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2351 EQEKVQMKEEAKItvemLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNK 2420
Cdd:COG4942 177 EALLAELEEERAA----LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1811-2311 |
8.09e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 8.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1811 KDNATNTEDNYKEKFLDMERELTRIKSE----KANIEHHILSVETNLEVVQAE--KLCLERDTESK---------QKVII 1875
Cdd:pfam15921 305 QEQARNQNSMYMRQLSDLESTVSQLRSElreaKRMYEDKIEELEKQLVLANSEltEARTERDQFSQesgnlddqlQKLLA 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1876 DL--KEELFTVISERNR---------------LREELDNVSKESKALDQMSKKMKEKIEELESHQ-------RESLRHIG 1931
Cdd:pfam15921 385 DLhkREKELSLEKEQNKrlwdrdtgnsitidhLRRELDDRNMEVQRLEALLKAMKSECQGQMERQmaaiqgkNESLEKVS 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1932 AVESEVKDKADLIQTLsfnVGELTKDKAHLQEQ---LQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQ---- 2004
Cdd:pfam15921 465 SLTAQLESTKEMLRKV---VEELTAKKMTLESSertVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKnegd 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2005 -IKLTESECEkqtiskALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDT 2083
Cdd:pfam15921 542 hLRNVQTECE------ALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDK 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2084 VETLERELERSEENQELAILD-----SENLKAeVETLKAQKDEMTKSLRIFELDLVTVRTERE----NLAKQLQEKQSRV 2154
Cdd:pfam15921 616 KDAKIRELEARVSDLELEKVKlvnagSERLRA-VKDIKQERDQLLNEVKTSRNELNSLSEDYEvlkrNFRNKSEEMETTT 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2155 SELDERCSSLRRLLEEKEQARVQMEEDSKSAM---LMLQMQLKELREEVAALcndQETLKAQEQSLDQPGEEVHHLKSSI 2231
Cdd:pfam15921 695 NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMkvaMGMQKQITAKRGQIDAL---QSKIQFLEEAMTNANKEKHFLKEEK 771
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2232 RKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELilseknmifqaEKSKAEIQTLKSEIQRMAQNLQDLQLE 2311
Cdd:pfam15921 772 NKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVAL-----------DKASLQFAECQDIIQRQEQESVRLKLQ 840
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1492-2344 |
8.66e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 8.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1492 LKNLEEKTESQRIMKNKEIEKLEQLLSSERKELSCLRKQYLSEKEQWQQKLTSVTLEMESKLAEEKQQTKTLSLELEVAR 1571
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1572 LQLQELDLSSRSLLGTDLESVVRCQNDNYDIKESEVYISETTEKTPKQDT---DQTCDKDIQQDLGLETSVTESETTRLT 1648
Cdd:pfam02463 255 SSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKlerRKVDDEEKLKESEKEKKKAEKELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1649 GEGCEEQPPKTNCEAPAEDKTQDCSECISELCSSSNVLvPMDVLEDQGSIQNLQLQKDTLNENLRLLPEVEDWDKKVESL 1728
Cdd:pfam02463 335 EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLE-EELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1729 LNeiMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSEKLESLPCNQEVCLRVERSEEDLGFNLDMGANELLSK 1808
Cdd:pfam02463 414 AR--QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLS 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1809 STKDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISER 1888
Cdd:pfam02463 492 RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALT 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1889 NRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVE-----------SEVKDKADLIQTLSFNVGELTKD 1957
Cdd:pfam02463 572 ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEddkrakvvegiLKDTELTKLKESAKAKESGLRKG 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1958 KAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSS 2037
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2038 AQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAIL-DSENLKAEVETLK 2116
Cdd:pfam02463 732 DKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKaQEEELRALEEELK 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2117 AQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKEL 2196
Cdd:pfam02463 812 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2197 REEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKH--QNILEQLKESKHHADLLKDRVENLEQELI 2274
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELllEEADEKEKEENNKEEEEERNKRLLLAKEE 971
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568911612 2275 LSEKN--MIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTrsENENLMKELKKEQERVSDLETINSSIE 2344
Cdd:pfam02463 972 LGKVNlmAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE--TCQRLKEFLELFVSINKGWNKVFFYLE 1041
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1857-2066 |
8.67e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 8.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1857 QAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESE 1936
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1937 VKDKADLIQTLSF-----------NVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQI 2005
Cdd:COG4942 106 LAELLRALYRLGRqpplalllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568911612 2006 KLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSA 2066
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
2246-2460 |
9.31e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.45 E-value: 9.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2246 QNILEQLKESKHHADLLKDRVENLEQELilsekNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELI--------STRS 2317
Cdd:PRK11281 42 QAQLDALNKQKLLEAEDKLVQQDLEQTL-----ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEalkddndeETRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2318 ENENL-MKELKKEQERVS--------DLETINSSIENLLKDKEQEKVQMKEEAKITVEmLQTQLKELNETVVSLCNDQEV 2388
Cdd:PRK11281 117 TLSTLsLRQLESRLAQTLdqlqnaqnDLAEYNSQLVSLQTQPERAQAALYANSQRLQQ-IRNLLKGGKVGGKALRPSQRV 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568911612 2389 SKTKEQ---NLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSV----NALTQEVEAGKqKLEKGEKeirTLKEQLKSQE 2460
Cdd:PRK11281 196 LLQAEQallNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRlehqLQLLQEAINSK-RLTLSEK---TVQEAQSQDE 270
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
296-1053 |
1.16e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 296 RQNAESAKRSLEQRIKEKEKELQEELSRQHQSFQALD-SEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQQLER-- 372
Cdd:pfam02463 262 KEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELkSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEEle 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 373 ----NLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSlIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMK 448
Cdd:pfam02463 342 kelkELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES-ERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDL 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 449 AKNTSQEIMLRDLQEKLNQQENSLTLEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKK 528
Cdd:pfam02463 421 LKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQ 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 529 ECEELKEEKNQISFWKIDSEKLINQIESEKEILLGKINHLETSLKTQQVSPDSNERIRTLEMERENFTVEIKNLQSMLDS 608
Cdd:pfam02463 501 KESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKL 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 609 KMVEIKTQKQAYLELQQKSESSDQKHQKEIENMC----LKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLR 684
Cdd:pfam02463 581 RLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEadedDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAE 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 685 DLLKSRGSSLVTNEDNQRSSEDNQRSSEDNQRGSLAFEQQPAVSDSFANVMGRKGSINSERSDCSVDggRSPEHIAILQN 764
Cdd:pfam02463 661 KSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRV--QEAQDKINEEL 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 765 RVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIHQNFVAETNQCISKLQEDAAVHQNIVAETLATLESKE 844
Cdd:pfam02463 739 KLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLE 818
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 845 KELQLLKEKLEAQQTEVQKLNKNnclLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEK 924
Cdd:pfam02463 819 EEQLLIEQEEKIKEEELEELALE---LKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKE 895
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 925 MNLLQKHEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEaVLEDLRGNYKTAQENNAKLEcmlsECTALCENRKNE 1004
Cdd:pfam02463 896 KEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPE-ELLLEEADEKEKEENNKEEE----EERNKRLLLAKE 970
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 568911612 1005 LEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEITNTNK 1053
Cdd:pfam02463 971 ELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRL 1019
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
813-988 |
1.25e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 813 AETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEM 892
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 893 NSIIS------------------LSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELS---DQ 951
Cdd:COG4942 103 KEELAellralyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEallAE 182
|
170 180 190
....*....|....*....|....*....|....*..
gi 568911612 952 YKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLE 988
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1697-2177 |
1.43e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1697 SIQNLQLQKDTLNENLRLLPEVEDWDKKVESL----------LNEIMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKE 1766
Cdd:PRK03918 267 RIEELKKEIEELEEKVKELKELKEKAEEYIKLsefyeeyldeLREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1767 KADLSEKLESLPCNQEVCLRVERSEEDLgfnldMGANELLSKSTKDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHI 1846
Cdd:PRK03918 347 LKELEKRLEELEERHELYEEAKAKKEEL-----ERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1847 LSVETNLEVVQAEK----LCLERDTESKQKVII--------DLKEELFTVISERNRLREELDNVSKESKALDQMSK--KM 1912
Cdd:PRK03918 422 KELKKAIEELKKAKgkcpVCGRELTEEHRKELLeeytaelkRIEKELKEIEEKERKLRKELRELEKVLKKESELIKlkEL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1913 KEKIEELEshqrESLRHIGAveSEVKDKADLIQTLSFNVGELTKDKAHLQEQLQNLqndsQELSLAIGELEIQIGQLNKE 1992
Cdd:PRK03918 502 AEQLKELE----EKLKKYNL--EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL----EELKKKLAELEKKLDELEEE 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1993 KESLVKESQNFQIkltESECEKQTISKALEVALKEkgefAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKE 2072
Cdd:PRK03918 572 LAELLKELEELGF---ESVEELEERLKELEPFYNE----YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEE 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2073 SQRESDSLK---DTVETLERELERSEENQELAildseNLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLaKQLQE 2149
Cdd:PRK03918 645 LRKELEELEkkySEEEYEELREEYLELSRELA-----GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL-EKLEK 718
|
490 500
....*....|....*....|....*...
gi 568911612 2150 KQSRVSELDERCSSLRRLLEEKEQARVQ 2177
Cdd:PRK03918 719 ALERVEELREKVKKYKALLKERALSKVG 746
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2005-2699 |
1.49e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2005 IKLTESECEKQTISKA-----LEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLS-VRIEADE--KKHLSAVAKLKESQRE 2076
Cdd:TIGR00618 123 AKKSETEEVIHDLLKLdyktfTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDqYTQLALMefAKKKSLHGKAELLTLR 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2077 SDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKA---QKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSR 2153
Cdd:TIGR00618 203 SQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAyltQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEET 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2154 VSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKE-LREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIR 2232
Cdd:TIGR00618 283 QERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAkLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2233 KLKVHIDADEKKH---QNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQ 2309
Cdd:TIGR00618 363 VATSIREISCQQHtltQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAEL 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2310 LELISTRSENENLMKE--LKKEQERVSDLETINSSIENLLK---DKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCN 2384
Cdd:TIGR00618 443 CAAAITCTAQCEKLEKihLQESAQSLKEREQQLQTKEQIHLqetRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDN 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2385 DQEVSKTKEQ------NLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKS 2458
Cdd:TIGR00618 523 PGPLTRRMQRgeqtyaQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2459 QEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEAL----QNSHKSLESELGLIKLEKVALVE 2534
Cdd:TIGR00618 603 LSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLtqerVREHALSIRVLPKELLASRQLAL 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2535 RVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRaQGKIKLMLKSC 2614
Cdd:TIGR00618 683 QKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH-QARTVLKARTE 761
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2615 RQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEEKVKEADKYLDKYCSLLIshEELEKAKEILEI 2694
Cdd:TIGR00618 762 AHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLV--QEEEQFLSRLEE 839
|
....*
gi 568911612 2695 EVARL 2699
Cdd:TIGR00618 840 KSATL 844
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2290-2561 |
1.73e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2290 EIQTLKSE--IQRMAQNLQDLQLELISTRSEN---ENLMKELKKEQERVSDL--------------ETINSSIENLLKDK 2350
Cdd:COG3206 86 QIEILKSRpvLERVVDKLNLDEDPLGEEASREaaiERLRKNLTVEPVKGSNVieisytspdpelaaAVANALAEAYLEQN 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2351 EQEKvqmKEEAKITVEMLQTQLKELNETVVSLcnDQEVSKTKEQN----LGSQVQTLELEKAQLLQDLGEAKNKYIIFQS 2426
Cdd:COG3206 166 LELR---REEARKALEFLEEQLPELRKELEEA--EAALEEFRQKNglvdLSEEAKLLLQQLSELESQLAEARAELAEAEA 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2427 SVNALTQEVEAGKQKLE--KGEKEIRTLKEQLKSQEqlvcklAQVEGEQQLWQKQKLELRnvtmALEQKVQVLQSE-NNT 2503
Cdd:COG3206 241 RLAALRAQLGSGPDALPelLQSPVIQQLRAQLAELE------AELAELSARYTPNHPDVI----ALRAQIAALRAQlQQE 310
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568911612 2504 LQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAE---LQREL-------RDMLQKTTQLS 2561
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAElrrLEREVevarelyESLLQRLEEAR 378
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
358-1213 |
2.50e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 358 LELEKVTSVKQQLERNLEEIRLKLSRaeqalqasqVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSL 437
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELK---------LKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 438 SKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFE 517
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 518 tllsalelkkkeCEELKEE-------KNQISFWKIDSEKLINQIESEKEILLGKINHLETSLKTQQvspDSNERIRTLEM 590
Cdd:pfam02463 327 ------------EKELKKEkeeieelEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK---LESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 591 ERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTGQVESLECKLQLLSSEV--VT 668
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELkkSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 669 KDQQYQDLRMEYETLRDLLK-SRGSSLVTNEDNQRSSEDNQRSSEDNQRGSLAFEQQPAVSDSFANVMGRKGSINSERSD 747
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSrQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 748 CSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMRceellqikgeveenlskAEQIHQNFVAETNQCISKLQEDAA 827
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLP-----------------LKSIAVLEIDPILNLAQLDKATLE 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 828 VHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNknncllegTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELT 907
Cdd:pfam02463 615 ADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGV--------SLEEGLAEKSEVKASLSELTKELLEIQELQEKAE 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 908 QANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELS-DQYKQERLQLLQRCEETEAVLEDLrgnyKTAQENNAK 986
Cdd:pfam02463 687 SELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQeAQDKINEELKLLKQKIDEEEEEEE----KSRLKKEEK 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 987 LECMLSECTALCENRKNELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEITNTNKHSMSATDGLRQEC 1066
Cdd:pfam02463 763 EEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALEL 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1067 LTLNEEQNEQQNEVSNL---THENEQLMELTQTKHDSYLAVEPVENSVKATEDEIGKSSSQYQMDIDTKDISLDSYKAQL 1143
Cdd:pfam02463 843 KEEQKLEKLAEEELERLeeeITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEER 922
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1144 VHLEALVRI----------LEVQLDQSEEENKKLHLELQTIREELETKSSQDPQSQARTGLKDCDTAEEKYVSMLQELSA 1213
Cdd:pfam02463 923 IKEEAEILLkyeeepeellLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1963-2520 |
2.55e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.82 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1963 EQLQNLQNDSQELSLAIgelEIQIGQLNKEKESLVKESQNFQIK--LTESECEKQTISKALEVALKEKGEFAVQLSSAQE 2040
Cdd:pfam10174 130 KELFLLRKTLEEMELRI---ETQKQTLGARDESIKKLLEMLQSKglPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEK 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2041 EVHQLRRGIE-KLSVRIEADEKKHLSAVAKLKESQ-----RESDSLKDTVETLERELERSEENQELAILDSENLKAEVET 2114
Cdd:pfam10174 207 ENIHLREELHrRNQLQPDPAKTKALQTVIEMKDTKissleRNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKF 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2115 LKAQKDEMTKSLRIFELDLVTVRTERENLAKQ--------------LQEKQSRVSELDERCSSLRRLLEEKEQArvqMEE 2180
Cdd:pfam10174 287 MKNKIDQLKQELSKKESELLALQTKLETLTNQnsdckqhievlkesLTAKEQRAAILQTEVDALRLRLEEKESF---LNK 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2181 DSKsamlmlqmQLKELREEVAALCNdqetlkaqeqsldqpgeEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHAD 2260
Cdd:pfam10174 364 KTK--------QLQDLTEEKSTLAG-----------------EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLA 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2261 LLKDRVENLEQ------------ELILSEKNMIFQA--EKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKEL 2326
Cdd:pfam10174 419 GLKERVKSLQTdssntdtalttlEEALSEKERIIERlkEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSL 498
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2327 KKEQERVSDLETINSSIENLLKDKEQEKVQMKEEA-KITVEMLQTQLKELNETVVSLCND------QEVSKTKEQNLGSQ 2399
Cdd:pfam10174 499 IDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECsKLENQLKKAHNAEEAVRTNPEINDrirlleQEVARYKEESGKAQ 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2400 VqtlELEKaqLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQ 2479
Cdd:pfam10174 579 A---EVER--LLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQ 653
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 568911612 2480 KLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLES 2520
Cdd:pfam10174 654 QLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTN 694
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2102-2705 |
2.61e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2102 ILDSENLKAEVETLKAQKDEmtksLRIFELDLVTVRTERENL------AKQLQEKQSRVSELDERCSSLRRLLEEKEQAR 2175
Cdd:COG4913 217 MLEEPDTFEAADALVEHFDD----LERAHEALEDAREQIELLepirelAERYAAARERLAELEYLRAALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2176 VQMEEDSksamlmLQMQLKELREEVAALCNDQETLKAQEQSL-----DQPGEEVHHLKSSIRKLKvhidadekkhqnilE 2250
Cdd:COG4913 293 LEAELEE------LRAELARLEAELERLEARLDALREELDELeaqirGNGGDRLEQLEREIERLE--------------R 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2251 QLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLEListrsenENLMKELKKEQ 2330
Cdd:COG4913 353 ELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL-------RDLRRELRELE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2331 ERVSDLETINSSI----ENLLKDKEQEKVQMKEEAKITVEMLQTQLKELN-ETVVslcndqevsktkEQNLGSQVQTLEL 2405
Cdd:COG4913 426 AEIASLERRKSNIparlLALRDALAEALGLDEAELPFVGELIEVRPEEERwRGAI------------ERVLGGFALTLLV 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2406 EKAQLLQ--------DLGEAKNKYIIFQSSVNALTQEVEAGK--QKLEKGEKEIRT-LKEQLKSQEQLVCklaqVEGEQq 2474
Cdd:COG4913 494 PPEHYAAalrwvnrlHLRGRLVYERVRTGLPDPERPRLDPDSlaGKLDFKPHPFRAwLEAELGRRFDYVC----VDSPE- 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2475 lwqkqklELRNVTMALEQKVQV--------------LQSENNTLQSTYEALqnshKSLESELGLIKLEKVALVERVSTIS 2540
Cdd:COG4913 569 -------ELRRHPRAITRAGQVkgngtrhekddrrrIRSRYVLGFDNRAKL----AALEAELAELEEELAEAEERLEALE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2541 GKEAELQrELRDMLQKTTQLSEDynkeknrlteevevlreelqntkaahLKSVNQLEKELQRAQGKIKLMLKSC---RQL 2617
Cdd:COG4913 638 AELDALQ-ERREALQRLAEYSWD--------------------------EIDVASAEREIAELEAELERLDASSddlAAL 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2618 EGEKEMLQKELSQLE---AAQQQRAGSLvDSNVDEVMTENKALKETLEEKVKEADK----YLDKYCSLLISHEELEKAKE 2690
Cdd:COG4913 691 EEQLEELEAELEELEeelDELKGEIGRL-EKELEQAEEELDELQDRLEAAEDLARLelraLLEERFAAALGDAVERELRE 769
|
650
....*....|....*
gi 568911612 2691 ILEIEVARLKSRQSR 2705
Cdd:COG4913 770 NLEERIDALRARLNR 784
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1944-2174 |
2.66e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 2.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1944 IQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTEsecEKQTISKALEV 2023
Cdd:COG4942 36 IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA---QKEELAELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2024 ALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKhlsaVAKLKESQRESDSLKDTVETLERELERSEENQElail 2103
Cdd:COG4942 113 LYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ----AEELRADLAELAALRAELEAERAELEALLAELE---- 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568911612 2104 dseNLKAEVETLKAQKDEMTKSLRifeldlvtvrTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQA 2174
Cdd:COG4942 185 ---EERAALEALKAERQKLLARLE----------KELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
2110-2360 |
2.95e-05 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 48.76 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2110 AEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQmeedsksamlmL 2189
Cdd:pfam00038 54 KEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVD-----------L 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2190 QMQLKELREEVAALCNDQEtlkaqeqsldqpgEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESK-HHADLLKDRVEN 2268
Cdd:pfam00038 123 EAKIESLKEELAFLKKNHE-------------EEVRELQAQVSDTQVNVEMDAARKLDLTSALAEIRaQYEEIAAKNREE 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2269 LEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVS-DLETINSSIENLl 2347
Cdd:pfam00038 190 AEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKASLERQLAETEERYElQLADYQELISEL- 268
|
250
....*....|...
gi 568911612 2348 kdkEQEKVQMKEE 2360
Cdd:pfam00038 269 ---EAELQETRQE 278
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
458-1177 |
3.66e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 458 LRDLQEKLNQQENSLTLEK---------LKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFEtllSALELKKK 528
Cdd:pfam15921 87 VKDLQRRLNESNELHEKQKfylrqsvidLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELE---AAKCLKED 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 529 ECEELKEEKNQISFWKIDSEKLINQIES---EKEILLGKINHLETSLKT---QQVSPDSNERIRTLEMERENFTVEIKNL 602
Cdd:pfam15921 164 MLEDSNTQIEQLRKMMLSHEGVLQEIRSilvDFEEASGKKIYEHDSMSTmhfRSLGSAISKILRELDTEISYLKGRIFPV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 603 QSMLDSKMVEikTQKQAYLELQQKSESSDQ---KHQKEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRME 679
Cdd:pfam15921 244 EDQLEALKSE--SQNKIELLLQQHQDRIEQlisEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSD 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 680 YETLRDLLKSRgsslvtnednqrsSEDNQRSSEDNQRgslAFEQQPAVSDSfanvmgRKGSINSERSDCSVDGGRSPEHI 759
Cdd:pfam15921 322 LESTVSQLRSE-------------LREAKRMYEDKIE---ELEKQLVLANS------ELTEARTERDQFSQESGNLDDQL 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 760 AILQNRVTSLESSLESQNQMNSDLQMR----CEELLQIKGEVEENLSKAEQIHQNFVAETNQCISKLQEDAAVHQ----- 830
Cdd:pfam15921 380 QKLLADLHKREKELSLEKEQNKRLWDRdtgnSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQgknes 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 831 -NIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQA 909
Cdd:pfam15921 460 lEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE 539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 910 NEALKEVNEALEQEKMNLLQKhEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRgnyktaqennakLEc 989
Cdd:pfam15921 540 GDHLRNVQTECEALKLQMAEK-DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR------------LE- 605
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 990 mLSECTALCENRKNELEQLKetfAKEQQEFLTKLAFAEEQNRKLMLELEIEQQtvRSEITNTNKHSMSATDGLRQECLTL 1069
Cdd:pfam15921 606 -LQEFKILKDKKDAKIRELE---ARVSDLELEKVKLVNAGSERLRAVKDIKQE--RDQLLNEVKTSRNELNSLSEDYEVL 679
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1070 NEEQNEQQNEVSNLTHENEQLMELTQTKhdsylaVEPVENSVKATEDEIG---KSSSQYQMDIDTKDISLDSYKAQLVHL 1146
Cdd:pfam15921 680 KRNFRNKSEEMETTTNKLKMQLKSAQSE------LEQTRNTLKSMEGSDGhamKVAMGMQKQITAKRGQIDALQSKIQFL 753
|
730 740 750
....*....|....*....|....*....|.
gi 568911612 1147 EALVRILEVQLDQSEEENKKLHLELQTIREE 1177
Cdd:pfam15921 754 EEAMTNANKEKHFLKEEKNKLSQELSTVATE 784
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
2266-2555 |
4.27e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 49.24 E-value: 4.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2266 VENLEQELILSEKNMIfqaekSKAEIQTLKSEIQrmaqnLQDLQLELISTRsenenlmkeLKKEQERVSDLETINSSIEN 2345
Cdd:PHA02562 156 VEDLLDISVLSEMDKL-----NKDKIRELNQQIQ-----TLDMKIDHIQQQ---------IKTYNKNIEEQRKKNGENIA 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2346 LLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEkAQLLQDLGEAKnkyiifq 2425
Cdd:PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV-IKMYEKGGVCP------- 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2426 ssvnALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQ 2505
Cdd:PHA02562 289 ----TCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVK 364
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 568911612 2506 STYEALQNSHKSLESELGLIKLEKVALVERVSTISgKEAELQRELRDMLQ 2555
Cdd:PHA02562 365 AAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV-KEKYHRGIVTDLLK 413
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1833-2406 |
4.40e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.31 E-value: 4.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1833 TRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEEL---FTVISERNRLREELDNVSKESKALDQMS 1909
Cdd:COG5022 829 EKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVelaERQLQELKIDVKSISSLKLVNLELESEI 908
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1910 KKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELtKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQL 1989
Cdd:COG5022 909 IELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKL-PELNKLHEVESKLKETSEEYEDLLKKSTILVREG 987
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1990 NKEKEslvkESQNFQikltesecekqtiskalevalKEKGEFAVQLSSAQEEVHQLRRgIEKLSVRIEADEKKHLSAVAK 2069
Cdd:COG5022 988 NKANS----ELKNFK---------------------KELAELSKQYGALQESTKQLKE-LPVEVAELQSASKIISSESTE 1041
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2070 LKeSQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMT----KSLRIFELDLVTVRTERENLAK 2145
Cdd:COG5022 1042 LS-ILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKtinvKDLEVTNRNLVKPANVLQFIVA 1120
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2146 QlqekQSRVSELDERCSSLRRLLEEKEqarvQMEEDSKSAMLMLQMQLKELREE----VAALCNDQETLKAQEQSLDQPG 2221
Cdd:COG5022 1121 Q----MIKLNLLQEISKFLSQLVNTLE----PVFQKLSVLQLELDGLFWEANLEalpsPPPFAALSEKRLYQSALYDEKS 1192
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2222 EEVHhlkSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLE--QELILSEKNMIFQAEKSKAEIQTLKSEIQ 2299
Cdd:COG5022 1193 KLSS---SEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTslKGFNNLNKKFDTPASMSNEKLLSLLNSID 1269
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2300 RMAQnLQDLQLELIST-----------RSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMK-EEAKITVEM 2367
Cdd:COG5022 1270 NLLS-SYKLEEEVLPAtinsllqyinvGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFEISDVDEElEELIQAVKV 1348
|
570 580 590
....*....|....*....|....*....|....*....
gi 568911612 2368 LQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELE 2406
Cdd:COG5022 1349 LQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKE 1387
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
369-1060 |
4.74e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 4.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 369 QLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELG------KVKVSLSKSQN 442
Cdd:pfam12128 231 QAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRtlddqwKEKRDELNGEL 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 443 FAEEMKAKNTSQEIMLRDLQEKLNQQENsltLEKLKlalADLERQRNCSQDLlKKREHHIDQLNNKLNKIEKEFETLLSA 522
Cdd:pfam12128 311 SAADAAVAKDRSELEALEDQHGAFLDAD---IETAA---ADQEQLPSWQSEL-ENLEERLKALTGKHQDVTAKYNRRRSK 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 523 LELKKKECeelkeeknqISFWKIDSEKLINQIESEKEILLGKINHLETSLKTQQvspdsNERIRTLEMERENFTVEIKNL 602
Cdd:pfam12128 384 IKEQNNRD---------IAGIKDKLAKIREARDRQLAVAEDDLQALESELREQL-----EAGKLEFNEEEYRLKSRLGEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 603 QSMLDSKMV--EIKTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTGQVESLECKLQLLSsevvtkdQQYQDLRMEY 680
Cdd:pfam12128 450 KLRLNQATAtpELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAS-------RRLEERQSAL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 681 ETLRDLLKSRGSSLVTNEDNQ----RSSEDNQRSSEDNQRGSLAFEQQPAVSDSFANVMGRKGSINSersdcsVDGGRSP 756
Cdd:pfam12128 523 DELELQLFPQAGTLLHFLRKEapdwEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKR------IDVPEWA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 757 EHIAILQNRVTSLESSLESQNQMNSDLQmrcEELLQIKGEVEE---NLSKAEQIHQN-------FVAETNQCISKLQEDA 826
Cdd:pfam12128 597 ASEEELRERLDKAEEALQSAREKQAAAE---EQLVQANGELEKasrEETFARTALKNarldlrrLFDEKQSEKDKKNKAL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 827 AVHQNIVAETLATLESKEKELQL-LKEKLEAQQTE-----VQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSK 900
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKkHQAWLEEQKEQkrearTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALE 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 901 KNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRGNYKTA 980
Cdd:pfam12128 754 TWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARL 833
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 981 QEN--------------NAKLECMLSECTALCENRKNELEQLKE--TFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTV 1044
Cdd:pfam12128 834 IADtklrraklemerkaSEKQQVRLSENLRGLRCEMSKLATLKEdaNSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYV 913
|
730
....*....|....*.
gi 568911612 1045 RSEITNTNKHSMSATD 1060
Cdd:pfam12128 914 EHFKNVIADHSGSGLA 929
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
201-431 |
4.95e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 4.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 201 LHQAKAQNQDLKSKMTELElRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNktRDEVVRSTAQYDQAAAKCTT 280
Cdd:COG4913 237 LERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELL--EAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 281 LEQKLKTLTEEL-SCHRQNAES---AKRSLEQRIkekekelqeelsrqhqsfQALDSEYTQMKTRLTQELQQVKHLHSTL 356
Cdd:COG4913 314 LEARLDALREELdELEAQIRGNggdRLEQLEREI------------------ERLERELEERERRRARLEALLAALGLPL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 357 QLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKE-NSLIRSQS-----EQRTREvcHLEEEL 430
Cdd:COG4913 376 PASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiASLERRKSniparLLALRD--ALAEAL 453
|
.
gi 568911612 431 G 431
Cdd:COG4913 454 G 454
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1886-2417 |
5.73e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 5.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1886 SERNRLREELDNVSKESKALDQMSKK---MKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQ 1962
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKaeeAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1963 EQLQNLQNDSQELslaigeleiqigqlnKEKESLVKESQNFQIKLTESECEKQTISKALEvaLKEKGEFAVQLSSAQEEV 2042
Cdd:PTZ00121 1378 KKADAAKKKAEEK---------------KKADEAKKKAEEDKKKADELKKAAAAKKKADE--AKKKAEEKKKADEAKKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2043 HQLRRGIEklsVRIEADEKKHLSAVAKLKESQRESDSLKDTVEtlerelerseenqelaildsENLKAEVETLKAQKDEM 2122
Cdd:PTZ00121 1441 EEAKKADE---AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE--------------------EAKKADEAKKKAEEAKK 1497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2123 TKSlrifELDLVTVRTERENLAKQLQEK----QSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKELRE 2198
Cdd:PTZ00121 1498 KAD----EAKKAAEAKKKADEAKKAEEAkkadEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2199 E--VAALCNDQETLKAQEQSLdqpgEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILS 2276
Cdd:PTZ00121 1574 EdkNMALRKAEEAKKAEEARI----EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2277 EknmifQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKvQ 2356
Cdd:PTZ00121 1650 E-----ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK-K 1723
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568911612 2357 MKEEAKITVEMLQTQLKELNETVVSLCNDQEvsktkEQNLGSQVQTLELEKAQLLQDLGEA 2417
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKDEE-----EKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2126-2329 |
5.76e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2126 LRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQarvqmEEDSKSAmlmlQMQLKELREEVAALCN 2205
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWD-----EIDVASA----EREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2206 DQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVEnLEQELILSEKnmiFQAE 2285
Cdd:COG4913 683 SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR-LELRALLEER---FAAA 758
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568911612 2286 KSKAEIQTLKSEIQrmaQNLQDLQLELISTRSENENLMKELKKE 2329
Cdd:COG4913 759 LGDAVERELRENLE---ERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
838-1048 |
6.56e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 6.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 838 ATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVN 917
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 918 EALEQEKMNLLQKHEK----------ITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRgnyKTAQENNAKL 987
Cdd:COG4942 100 EAQKEELAELLRALYRlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR---AELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568911612 988 ECMLSEctalCENRKNELEQLKetfaKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEI 1048
Cdd:COG4942 177 EALLAE----LEEERAALEALK----AERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1985-2223 |
8.08e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 8.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1985 QIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEvalkekgEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKkhl 2064
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-------ALERRIAALARRIRALEQELAALEAELAELEK--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2065 savaKLKESQRESDSLKDTVETLERELERSEENQELAIL----DSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTER 2140
Cdd:COG4942 91 ----EIAELRAELEAQKEELAELLRALYRLGRQPPLALLlspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2141 ENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQmeedsksamlmLQMQLKELREEVAALCNDQETLKAQEQSLDQP 2220
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLAR-----------LEKELAELAAELAELQQEAEELEALIARLEAE 235
|
...
gi 568911612 2221 GEE 2223
Cdd:COG4942 236 AAA 238
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1962-2303 |
8.64e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.41 E-value: 8.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1962 QEQLQNLQNDSQELSLAIGELEIQIgQLNKEKESLVKESQNFQIKLT--ESECEKQTI-----SKALEVALKEKGEFAVQ 2034
Cdd:PRK04863 306 QYRLVEMARELAELNEAESDLEQDY-QAASDHLNLVQTALRQQEKIEryQADLEELEErleeqNEVVEEADEQQEENEAR 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2035 LSSAQEEVHQLRRGIEKLSVRIEADEKKHLS---AVAKLKESQRESDslkdtvetlerelerseenqeLAILDSENLKAE 2111
Cdd:PRK04863 385 AEAAEEEVDELKSQLADYQQALDVQQTRAIQyqqAVQALERAKQLCG---------------------LPDLTADNAEDW 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2112 VETLKAQKDEMTKSL--------------RIFELDLVTVR-----TERE-----------------NLAKQLQEKQSRVS 2155
Cdd:PRK04863 444 LEEFQAKEQEATEELlsleqklsvaqaahSQFEQAYQLVRkiageVSRSeawdvarellrrlreqrHLAEQLQQLRMRLS 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2156 ELDERCS---SLRRLLEEKEQARVQMEEDsksamlmlQMQLKELREEVAALcndQETLKAQEQSLDQPGEEVHH----LK 2228
Cdd:PRK04863 524 ELEQRLRqqqRAERLLAEFCKRLGKNLDD--------EDELEQLQEELEAR---LESLSESVSEARERRMALRQqleqLQ 592
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568911612 2229 SSIRKLKVHIDAdEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQ 2303
Cdd:PRK04863 593 ARIQRLAARAPA-WLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
757-1029 |
1.02e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 757 EHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIhqnfvaetnqcISKLQEDAAVHQNIVAET 836
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD-----------IARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 837 LATLESKEKELQLLKEKLEAQQTEVQKLnknncllegtLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEV 916
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEA----------EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 917 NEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQyKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSECTA 996
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEEL-EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270
....*....|....*....|....*....|...
gi 568911612 997 LCENRKNELEQLKETFAKEQQEFLTKLAFAEEQ 1029
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
333-1221 |
1.18e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 333 SEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKK----- 407
Cdd:TIGR00606 182 TRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEiehnl 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 408 ------ENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQ---NFAEEMKAKNTSQEIMLRDLQ---EKLNQQENSLTLE 475
Cdd:TIGR00606 262 skimklDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEqlnDLYHNHQRTVREKERELVDCQrelEKLNKERRLLNQE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 476 KLKLALA------------------DLERQRNCSQDLLKKREHHID---QLNNKLN-KIEKEFETLLSALELKKKECEEL 533
Cdd:TIGR00606 342 KTELLVEqgrlqlqadrhqehirarDSLIQSLATRLELDGFERGPFserQIKNFHTlVIERQEDEAKTAAQLCADLQSKE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 534 KEEKNQISFWKIDSEKLINQIESEKEILLGKINHLETSLKTQQVSPDSNERIRTLEMERENFTVEIKNLQsmldsKMVEI 613
Cdd:TIGR00606 422 RLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAE-----KNSLT 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 614 KTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTGQVESLecklqLLSSEVVTKDQQYQDLRMEYET----------- 682
Cdd:TIGR00606 497 ETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQME-----MLTKDKMDKDEQIRKIKSRHSDeltsllgyfpn 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 683 ---LRDLLKSRGSSLVTNEDNQRSSEDNQRSSEDNQRG-----SLAFEQQPAVSDSFANVMGRKgSINSERSDCSVDGGR 754
Cdd:TIGR00606 572 kkqLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHinnelESKEEQLSSYEDKLFDVCGSQ-DEESDLERLKEEIEK 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 755 SPEHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIHQNF---VAETNQCISKLQEDAAVHQN 831
Cdd:TIGR00606 651 SSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLApdkLKSTESELKKKEKRRDEMLG 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 832 IVAETLATLESKEKELQLLKEKLEAQQTEVQK----LNKNNCLLEGTLKELQLLSDTLS-----------SEKKEMNSII 896
Cdd:TIGR00606 731 LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRlkndIEEQETLLGTIMPEEESAKVCLTdvtimerfqmeLKDVERKIAQ 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 897 SLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAEL---SDQYKQERLQLLQRCEETEAVLEDL 973
Cdd:TIGR00606 811 QAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLkskTNELKSEKLQIGTNLQRRQQFEEQL 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 974 RGNYKTAQennaklecmlsECTALCENRKNELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELeieqQTVRSEITNTNK 1053
Cdd:TIGR00606 891 VELSTEVQ-----------SLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKV----NDIKEKVKNIHG 955
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1054 HSMSATDGLRQECLTLNEEQNEQQNEVSNLTHENEQLMEltQTKHDSYLAVEPVENSvkatedEIGKSSSQYQMDIDTKD 1133
Cdd:TIGR00606 956 YMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQE--KINEDMRLMRQDIDTQ------KIQERWLQDNLTLRKRE 1027
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1134 ISLDSYKAQLVhlEALVRILEVQLDQSEEENKKLHLELQTIREE-------LETKSSQDPQSQARTGLKDCDTAEEKYVS 1206
Cdd:TIGR00606 1028 NELKEVEEELK--QHLKEMGQMQVLQMKQEHQKLEENIDLIKRNhvlalgrQKGYEKEIKHFKKELREPQFRDAEEKYRE 1105
|
970
....*....|....*
gi 568911612 1207 MLQELSASQNENAHL 1221
Cdd:TIGR00606 1106 MMIVMRTTELVNKDL 1120
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
2271-2693 |
1.29e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.79 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2271 QELILSEKNMIFQAEKSKAEIQ-TLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKD 2349
Cdd:pfam05483 193 EKMILAFEELRVQAENARLEMHfKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2350 KEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQT---LELEKAQLLQDLGEAKNKYII--- 2423
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTicqLTEEKEAQMEELNKAKAAHSFvvt 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2424 -FQSSVNALTQEVEAGKQKLEKGEK----------------------------EIRTLKEQLKSQEQLVCKLAQVEGEQQ 2474
Cdd:pfam05483 353 eFEATTCSLEELLRTEQQRLEKNEDqlkiitmelqkksseleemtkfknnkevELEELKKILAEDEKLLDEKKQFEKIAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2475 LWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDML 2554
Cdd:pfam05483 433 ELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMT 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2555 QKTTQLSEDYNKEKNRlTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLML----KSCRQLEGEKEMLQKELSQ 2630
Cdd:pfam05483 513 LELKKHQEDIINCKKQ-EERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLdkseENARSIEYEVLKKEKQMKI 591
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568911612 2631 LEAAQQQRAGSLVDSN--VDEVMTENKALKETLEEKVKEADKYLDKYCSLLIsheELEKAKEILE 2693
Cdd:pfam05483 592 LENKCNNLKKQIENKNknIEELHQENKALKKKGSAENKQLNAYEIKVNKLEL---ELASAKQKFE 653
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
403-1012 |
1.31e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 403 EEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEKLKLAL- 481
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNd 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 482 ----ADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQISFWKIDSEKLINQIESE 557
Cdd:TIGR04523 116 keqkNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNK 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 558 KEILLGKINHLETSlktqqvspdsNERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSE---SSDQKH 634
Cdd:TIGR04523 196 LLKLELLLSNLKKK----------IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNqlkDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 635 QKEIENMCLKANKLTGQVESLECKLQLLSSEVVT-KDQQYQDLRMEyetLRDLLKSRGSSLvTNEDNQRSSEDNQRSSED 713
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlNNQKEQDWNKE---LKSELKNQEKKL-EEIQNQISQNNKIISQLN 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 714 NQRGSLAFEQQPAVSD--SFANVMGRKgsiNSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMRCEELL 791
Cdd:TIGR04523 342 EQISQLKKELTNSESEnsEKQRELEEK---QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 792 QIKgeveENLSKAEQIHQNFVAETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLL--------------KEKLEAQ 857
Cdd:TIGR04523 419 QEK----ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLsrsinkikqnleqkQKELKSK 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 858 QTEVQKLNKNNCLLEGTLKEL-----QLLS--DTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKmNLLQK 930
Cdd:TIGR04523 495 EKELKKLNEEKKELEEKVKDLtkkisSLKEkiEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNK-EIEEL 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 931 HEKITSCIAEQERsIAELSDQYKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSECTALCENRKNELEQLKE 1010
Cdd:TIGR04523 574 KQTQKSLKKKQEE-KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKE 652
|
..
gi 568911612 1011 TF 1012
Cdd:TIGR04523 653 TI 654
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
352-1054 |
1.38e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.79 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 352 LHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELR--------RSSEEMKKENSLIRSQSEqrTREV 423
Cdd:pfam05483 79 LYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQfenekvslKLEEEIQENKDLIKENNA--TRHL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 424 CHLEEELGKVKVSLSKSQNFAEEMKAK-----NTSQEIMLRDLQEKLNQQENSLTLEKLKLaladlerqrncsQDLLKKR 498
Cdd:pfam05483 157 CNLLKETCARSAEKTKKYEYEREETRQvymdlNNNIEKMILAFEELRVQAENARLEMHFKL------------KEDHEKI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 499 EHHIDQLNNKLNKIEKEFETLLsalelkkKECEELKEEKNQISFWKIDSEKLINQIESEKEI-------LLGKINHLETS 571
Cdd:pfam05483 225 QHLEEEYKKEINDKEKQVSLLL-------IQITEKENKMKDLTFLLEESRDKANQLEEKTKLqdenlkeLIEKKDHLTKE 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 572 LKTQQVS-PDSNERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTG 650
Cdd:pfam05483 298 LEDIKMSlQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNED 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 651 QVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLLKSRGSSLVTNEDNQRSSEDNQRSSEDnqrgslafeqqpavsds 730
Cdd:pfam05483 378 QLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQE----------------- 440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 731 fanVMGRKGSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIHQN 810
Cdd:pfam05483 441 ---LIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKK 517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 811 FVAETNQCisKLQEDAAVHQnivAETLATLESK-EKELQLLKEKLEAQQTEVQ----KLNKNNCLLEGTLKELQLLSDTL 885
Cdd:pfam05483 518 HQEDIINC--KKQEERMLKQ---IENLEEKEMNlRDELESVREEFIQKGDEVKckldKSEENARSIEYEVLKKEKQMKIL 592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 886 SSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQYKQE-------RLQ 958
Cdd:pfam05483 593 ENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEiedkkisEEK 672
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 959 LLQRCEETEAVLEDLrgnYKTAQENNAKLECMLSECTALCENRKNELEQLKETFAKEQQEFLTKlafaEEQNRKLMLELE 1038
Cdd:pfam05483 673 LLEEVEKAKAIADEA---VKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNK----EQEQSSAKAALE 745
|
730
....*....|....*.
gi 568911612 1039 IEQQTVRSEITNTNKH 1054
Cdd:pfam05483 746 IELSNIKAELLSLKKQ 761
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1853-2377 |
1.43e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1853 LEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELEsHQRESLRHIGA 1932
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELR-EELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1933 VESEVKDKADLIQTLSFNVGELTKDKAHLQEqLQNLQNDSQELSLAIGELEIQIGQLnKEKESLVKESQnfqikltesec 2012
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEE-LRELEEELEELEAELAELQEELEEL-LEQLSLATEEE----------- 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2013 eKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKH--------LSAVAKLKESQRESDSLKDTV 2084
Cdd:COG4717 194 -LQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEErlkearllLLIAAALLALLGLGGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2085 ETLERELERSEenqELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSL 2164
Cdd:COG4717 273 LTIAGVLFLVL---GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2165 RRLLEEKEQARVQMEEDSKSAML--MLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADE 2242
Cdd:COG4717 350 QELLREAEELEEELQLEELEQEIaaLLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2243 kkhqnILEQLKESKHHADLLKDRVENLEQELIlSEKNMIFQAEKSKaEIQTLKSEIQRMAQNLQDLQLELISTRSENENL 2322
Cdd:COG4717 430 -----LEEELEELEEELEELEEELEELREELA-ELEAELEQLEEDG-ELAELLQELEELKAELRELAEEWAALKLALELL 502
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 568911612 2323 MKELKK-EQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNE 2377
Cdd:COG4717 503 EEAREEyREERLPPVLERASEYFSRLTDGRYRLIRIDEDLSLKVDTEDGRTRPVEE 558
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1797-2695 |
1.53e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 47.74 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1797 NLDMGANELLSKSTKDNATNTEDnyKEKFLDMERELTRIKSEKANIEHHilSVETNLEVVQAEK-LCLERDTESKQKVII 1875
Cdd:TIGR01612 672 DIDALYNELSSIVKENAIDNTED--KAKLDDLKSKIDKEYDKIQNMETA--TVELHLSNIENKKnELLDIIVEIKKHIHG 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1876 DLKEELFTVISE-RNRLREELDNVSKESKALDQMSKkMKEKIEELESHQRESLRHIGAVESEVKDKAD----LIQTLSFN 1950
Cdd:TIGR01612 748 EINKDLNKILEDfKNKEKELSNKINDYAKEKDELNK-YKSKISEIKNHYNDQINIDNIKDEDAKQNYDkskeYIKTISIK 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1951 VGELTKdkahLQEQLQNLQNDsqelslAIGELEIQIGQLNKEKESLVKESQNFQikltesecekqtiskalEVALKEKGE 2030
Cdd:TIGR01612 827 EDEIFK----IINEMKFMKDD------FLNKVDKFINFENNCKEKIDSEHEQFA-----------------ELTNKIKAE 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2031 FA-VQLSSAQEEVHQLRRGIEKLSVRIEaDEKKHLSAVAKLKESQRESDSLKDTVET--LERELERSEENQELAILDSEN 2107
Cdd:TIGR01612 880 ISdDKLNDYEKKFNDSKSLINEINKSIE-EEYQNINTLKKVDEYIKICENTKESIEKfhNKQNILKEILNKNIDTIKESN 958
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2108 LkaeVEtlKAQKDEmtkslriFELDLVTVRTERENLAKQ--LQEKQSRVSELDERCSSLRRLLEEkeqarvqmeedSKSA 2185
Cdd:TIGR01612 959 L---IE--KSYKDK-------FDNTLIDKINELDKAFKDasLNDYEAKNNELIKYFNDLKANLGK-----------NKEN 1015
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2186 MLMLQMQLKElreevaALCNDQETlKAQEQSLDQPGEEVHhLKSSIRKLKVHIDAD-----EKKHQNILEQLKESKHHAD 2260
Cdd:TIGR01612 1016 MLYHQFDEKE------KATNDIEQ-KIEDANKNIPNIEIA-IHTSIYNIIDEIEKEigkniELLNKEILEEAEINITNFN 1087
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2261 LLKDRVENLEQELILSEKNMifqaeKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKE---QERVSDLE 2337
Cdd:TIGR01612 1088 EIKEKLKHYNFDDFGKEENI-----KYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQindLEDVADKA 1162
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2338 TINSSIENLlkDKEQEKVQMKEEAKitvemlqtqlKELNETVVSLCNdqEVSktkeqnlgsqvqtlELEKAQllQDLGEA 2417
Cdd:TIGR01612 1163 ISNDDPEEI--EKKIENIVTKIDKK----------KNIYDEIKKLLN--EIA--------------EIEKDK--TSLEEV 1212
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2418 KNKYIIFQSSVNALTqeveagkqkLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKlelrNVTMALEQKVQVL 2497
Cdd:TIGR01612 1213 KGINLSYGKNLGKLF---------LEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEM----GIEMDIKAEMETF 1279
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2498 QSENNTLQSTYEALQNSHKSLESelglIKLEKVALVE---RVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEE 2574
Cdd:TIGR01612 1280 NISHDDDKDHHIISKKHDENISD----IREKSLKIIEdfsEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNIL 1355
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2575 VEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCrqlegekemlqKELSQLEAAQQQRAGSLVDSNVDEVMTEN 2654
Cdd:TIGR01612 1356 KLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKI-----------KDDINLEECKSKIESTLDDKDIDECIKKI 1424
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|
gi 568911612 2655 KALKETL--EEK-----VKEADKYlDKYCSLLISHEEL--EKAKEILEIE 2695
Cdd:TIGR01612 1425 KELKNHIlsEESnidtyFKNADEN-NENVLLLFKNIEMadNKSQHILKIK 1473
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
2151-2716 |
1.56e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.59 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2151 QSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQmQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSS 2230
Cdd:PRK01156 179 RAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLK-EIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2231 IRKlkvhIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQl 2310
Cdd:PRK01156 258 IKT----AESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLS- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2311 ELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKitvemlqtqlkelnetvvslcNDQEVSK 2390
Cdd:PRK01156 333 VLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSK---------------------NIERMSA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2391 TKEQNLGSQVQTLELEKAQLlqdlGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQeqlVCklaqve 2470
Cdd:PRK01156 392 FISEILKIQEIDPDAIKKEL----NEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCP---VC------ 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2471 geqqlwqkqklelrNVTMALEQKVQVLQSENNTLQSTYEALQNshksLESELGLIKLEKVALVERVSTISGKEA-ELQRE 2549
Cdd:PRK01156 459 --------------GTTLGEEKSNHIINHYNEKKSRLEEKIRE----IEIEVKDIDEKIVDLKKRKEYLESEEInKSINE 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2550 LRDMLQKTTQLSEDYNKEkNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLMlkSCRQLEGEKEMLQKELS 2629
Cdd:PRK01156 521 YNKIESARADLEDIKIKI-NELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLI--DIETNRSRSNEIKKQLN 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2630 QLEAAQQQragslVDSNVDEVMTENKALKETLEEKVKEADKYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQDLQ 2709
Cdd:PRK01156 598 DLESRLQE-----IEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEI 672
|
....*..
gi 568911612 2710 SSPLLNS 2716
Cdd:PRK01156 673 TSRINDI 679
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1886-2085 |
1.60e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1886 SERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQEQL 1965
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1966 QNLQND---------------------SQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVA 2024
Cdd:COG4942 100 EAQKEElaellralyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568911612 2025 LKEKGEFAVQLSSAQEEVhqlrrgiEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVE 2085
Cdd:COG4942 180 LAELEEERAALEALKAER-------QKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2192-2638 |
1.67e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2192 QLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQN--ILEQLKESKHHADLLKDRVENL 2269
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlpLYQELEALEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2270 EQElILSEKNMIFQAEKSKAEIQTLKSEIQR--------MAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINS 2341
Cdd:COG4717 152 EER-LEELRELEEELEELEAELAELQEELEElleqlslaTEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2342 SIENLLKDKEQEKVQMKEEAKI----TVEMLQTQLKELNETVVS------------------LCNDQEVSKTKEQNLGSQ 2399
Cdd:COG4717 231 QLENELEAAALEERLKEARLLLliaaALLALLGLGGSLLSLILTiagvlflvlgllallfllLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2400 VQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLK-EQLKSQEQLVCKLAQVEGEQQLWQK 2478
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQlEELEQEIAALLAEAGVEDEEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2479 qklelrnvtmaLEQKVQvlqsenntlqstYEALQNSHKSLESELGLIKLEKVALVERVSTisgkeaelqRELRDMLQKTT 2558
Cdd:COG4717 391 -----------LEQAEE------------YQELKEELEELEEQLEELLGELEELLEALDE---------EELEEELEELE 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2559 QLSEDYNKEKNRLTEEVEVLREELQNTKAAHlkSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQR 2638
Cdd:COG4717 439 EELEELEEELEELREELAELEAELEQLEEDG--ELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPP 516
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2194-2703 |
2.05e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2194 KELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQEL 2273
Cdd:TIGR04523 47 NELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVEL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2274 ILSEKnmifQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQE 2353
Cdd:TIGR04523 127 NKLEK----QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2354 KVQMKEEAKITVEmLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKyiifqssVNALTQ 2433
Cdd:TIGR04523 203 LSNLKKKIQKNKS-LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQ-------LSEKQK 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2434 EVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcklaqvEGEQQLWQKQKLELRNVtmalEQKVQVLQSENNTLQSTYEALQN 2513
Cdd:TIGR04523 275 ELEQNNKKIKELEKQLNQLKSEISDLNN--------QKEQDWNKELKSELKNQ----EKKLEEIQNQISQNNKIISQLNE 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2514 SHKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHlKSV 2593
Cdd:TIGR04523 343 QISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ-QEK 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2594 NQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQragslVDSNVDEVMTENKALKETLEEKVKEADKYLD 2673
Cdd:TIGR04523 422 ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRES-----LETQLKVLSRSINKIKQNLEQKQKELKSKEK 496
|
490 500 510
....*....|....*....|....*....|
gi 568911612 2674 KYCSLLISHEELEKAKEILEIEVARLKSRQ 2703
Cdd:TIGR04523 497 ELKKLNEEKKELEEKVKDLTKKISSLKEKI 526
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
795-1125 |
2.11e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 795 GEVEENLSKAEQIhqnfVAETNQCISKLQEDAavhqnivaetlatlESKEKELQLLKEKLEAQQTEvqKLNKnnclLEGT 874
Cdd:TIGR02169 180 EEVEENIERLDLI----IDEKRQQLERLRRER--------------EKAERYQALLKEKREYEGYE--LLKE----KEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 875 LKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNE---ALEQEKMNLLQKH-EKITSCIAEQERSIAELSD 950
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKkikDLGEEEQLRVKEKiGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 951 QYKQ---ERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSECTALCENRKNELEQLKETFA------KEQQEFLT 1021
Cdd:TIGR02169 316 ELEDaeeRLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAetrdelKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1022 KLAFAEEQNRKLMLELEIEQQTVRSEITNTNkhsmSATDGLRQECLTLNEEQNEQQNEVSNLTHENEQLMELTQTKHDSY 1101
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLN----AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340
....*....|....*....|....
gi 568911612 1102 LAvepVENSVKATEDEIGKSSSQY 1125
Cdd:TIGR02169 472 YD---LKEEYDRVEKELSKLQREL 492
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2428-2647 |
2.24e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2428 VNALTQE--VEAGKQKLEKGEKEIRTLKEQLKSQEQlvcKLAQVEGEQQLWQKQK--LELRNVTMALEQKVQVLQSENNT 2503
Cdd:COG3206 154 ANALAEAylEQNLELRREEARKALEFLEEQLPELRK---ELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2504 LQSTYEALQNSHKSLESELGLIKLEKVALVE--RVSTISGKEAELQRELRDMLQKTT-------QLSEDYNKEKNRLTEE 2574
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTpnhpdviALRAQIAALRAQLQQE 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2575 VEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLM---------LKscRQLEGEKEMLQKELSQLEAAQQQRAGSLVDS 2645
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELpeleaelrrLE--REVEVARELYESLLQRLEEARLAEALTVGNV 388
|
..
gi 568911612 2646 NV 2647
Cdd:COG3206 389 RV 390
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2138-2333 |
2.26e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2138 TERENLAKQLQEKQSRVSELDERcssLRRLLEEKEQARVQMEEdsksamlmLQMQLKELREEVAALcndQETLKAQEQSL 2217
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAE---LDALQAELEELNEEYNE--------LQAELEALQAEIDKL---QAEIAEAEAEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2218 DQPGEEvhhLKSSIRKLKVHIDADekkhqNILEQLKESKHHADLLkDRVENLEQ------ELILSEKNMIFQAEKSKAEI 2291
Cdd:COG3883 82 EERREE---LGERARALYRSGGSV-----SYLDVLLGSESFSDFL-DRLSALSKiadadaDLLEELKADKAELEAKKAEL 152
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568911612 2292 QTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERV 2333
Cdd:COG3883 153 EAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAA 194
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2223-2704 |
2.33e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2223 EVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQEL------ILSEKNMIfqaEKSKAEIQTLKS 2296
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIkdlndkLKKNKDKI---NKLNSDLSKINS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2297 EIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELN 2376
Cdd:TIGR04523 111 EIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2377 ETVVSLcndqevskTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLK-EQ 2455
Cdd:TIGR04523 191 KIKNKL--------LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKdEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2456 LKSQEQLVCKLAQVEGeqqlwQKQKLElrnvtmALEQKVQVLQSENNTLQStyEALQNSHKSLESELGLIKLEKVALVER 2535
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQ-----NNKKIK------ELEKQLNQLKSEISDLNN--QKEQDWNKELKSELKNQEKKLEEIQNQ 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2536 VSTISGKEAELQRELRDmLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCR 2615
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQ-LKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQ 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2616 QLEGEKEMLQKELSQLEaAQQQRAGSLVDSNVDEV--MTENKALKETLEEKVKEADKYLDKYCSLLisHEELEKAKEILE 2693
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLE-KEIERLKETIIKNNSEIkdLTNQDSVKELIIKNLDNTRESLETQLKVL--SRSINKIKQNLE 485
|
490
....*....|.
gi 568911612 2694 IEVARLKSRQS 2704
Cdd:TIGR04523 486 QKQKELKSKEK 496
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
2250-2663 |
2.41e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 46.66 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2250 EQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAeIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKE 2329
Cdd:pfam05557 66 EAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREV-ISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2330 QERVSDLETINSSIE---NLLKDKEQekvqmkeeakitvemlqtQLKELNETVVSLCNDQEVSKTKEQNLGSqVQTLELE 2406
Cdd:pfam05557 145 KAKASEAEQLRQNLEkqqSSLAEAEQ------------------RIKELEFEIQSQEQDSEIVKNSKSELAR-IPELEKE 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2407 KAQLLqdlgEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKeirtLKEQLKSQEqlvCKLAQVEGEQQLWQK----QKLE 2482
Cdd:pfam05557 206 LERLR----EHNKHLNENIENKLLLKEEVEDLKRKLEREEK----YREEAATLE---LEKEKLEQELQSWVKlaqdTGLN 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2483 LRnVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISgKEAELQRELRDMLQKTT---- 2558
Cdd:pfam05557 275 LR-SPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLN-KKLKRHKALVRRLQRRVlllt 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2559 -------QLSEDYNKEKN------RLTEEVEVLREELQNTKAAHLKSVNQLEKeLQRAQGKIKLMlksCRQLEGEKEMLQ 2625
Cdd:pfam05557 353 kerdgyrAILESYDKELTmsnyspQLLERIEEAEDMTQKMQAHNEEMEAQLSV-AEEELGGYKQQ---AQTLERELQALR 428
|
410 420 430
....*....|....*....|....*....|....*...
gi 568911612 2626 KELSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEE 2663
Cdd:pfam05557 429 QQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNE 466
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2134-2401 |
2.89e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.66 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2134 VTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARvQMEEDSKSAMLMLQMQLKELREEVAALCNDQETLKAQ 2213
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKAR-QAEMDRQAAIYAEQERMAMERERELERIRQEERKREL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2214 EQSLDqpgEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQT 2293
Cdd:pfam17380 363 ERIRQ---EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2294 LKS----EIQRMAQNLQDLQLELISTRSENENLMK---ELKKEQERVSDLETINSSI-ENLLKDKEQEKVQMKEEAKITV 2365
Cdd:pfam17380 440 LEEerarEMERVRLEEQERQQQVERLRQQEEERKRkklELEKEKRDRKRAEEQRRKIlEKELEERKQAMIEEERKRKLLE 519
|
250 260 270
....*....|....*....|....*....|....*.
gi 568911612 2366 EMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQ 2401
Cdd:pfam17380 520 KEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQ 555
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
2127-2362 |
2.97e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.43 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2127 RIFEL-DLVTVRTERENLAKQLQEKQSRVSELDERCSS----------LRRLLEEKEQARVQMEEDSKSAMLMLQMQLKE 2195
Cdd:PLN02939 151 RLQALeDLEKILTEKEALQGKINILEMRLSETDARIKLaaqekihveiLEEQLEKLRNELLIRGATEGLCVHSLSKELDV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2196 LREEVAALCNDQETLKAQEQSLDQPGEEVHHL-------KSSIRKLKVH-IDADEkkhqnilEQLKESKHHADLLKDRVE 2267
Cdd:PLN02939 231 LKEENMLLKDDIQFLKAELIEVAETEERVFKLekersllDASLRELESKfIVAQE-------DVSKLSPLQYDCWWEKVE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2268 NLeQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELIStrSENENLMKE---LKKEQERVSDLEtINSSI- 2343
Cdd:PLN02939 304 NL-QDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFS--SYKVELLQQklkLLEERLQASDHE-IHSYIq 379
|
250 260
....*....|....*....|.
gi 568911612 2344 --ENLLKDKEQEKVQMKEEAK 2362
Cdd:PLN02939 380 lyQESIKEFQDTLSKLKEESK 400
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1827-2552 |
3.15e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.58 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1827 DMERELTRIKSEKANIEHHILSvetNLEVVQAEKLCLERdTESKQKVIIDLKEELftvISERNRLREELDNVSKESKALD 1906
Cdd:TIGR00606 367 DSLIQSLATRLELDGFERGPFS---ERQIKNFHTLVIER-QEDEAKTAAQLCADL---QSKERLKQEQADEIRDEKKGLG 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1907 QMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAH-----LQEQLQNLQNDSQELSLAIGE 1981
Cdd:TIGR00606 440 RTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNsltetLKKEVKSLQNEKADLDRKLRK 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1982 LEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQlSSAQEEVHQLRRGIEKLSVRIeADEK 2061
Cdd:TIGR00606 520 LDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNK-KQLEDWLHSKSKEINQTRDRL-AKLN 597
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2062 KHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERE 2141
Cdd:TIGR00606 598 KELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQ 677
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2142 NLA----------KQLQE----KQSRVSELDERCSSLRRLLEEKEQARVQM---EEDSKSAMLMLQMQLKELREEVAALC 2204
Cdd:TIGR00606 678 SCCpvcqrvfqteAELQEfisdLQSKLRLAPDKLKSTESELKKKEKRRDEMlglAPGRQSIIDLKEKEIPELRNKLQKVN 757
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2205 NDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVhidaDEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQA 2284
Cdd:TIGR00606 758 RDIQRLKNDIEEQETLLGTIMPEEESAKVCLT----DVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQE 833
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2285 EKSK-----AEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKE 2359
Cdd:TIGR00606 834 KQHEldtvvSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP 913
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2360 EAkitvEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYII-FQSSVNALTQEVEAG 2438
Cdd:TIGR00606 914 LE----TFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKqKETELNTVNAQLEEC 989
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2439 KQKLEKGEKEIRTLKEQLKSQEQlvcklaqvegeQQLWQKQKLELRNVTMAL-EQKVQVLQSENNTLQSTYEALQNSHKS 2517
Cdd:TIGR00606 990 EKHQEKINEDMRLMRQDIDTQKI-----------QERWLQDNLTLRKRENELkEVEEELKQHLKEMGQMQVLQMKQEHQK 1058
|
730 740 750
....*....|....*....|....*....|....*
gi 568911612 2518 LESELGLIKLEKVALVERVSTISGKEAELQRELRD 2552
Cdd:TIGR00606 1059 LEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2034-2203 |
3.30e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 3.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2034 QLSSAQEEVHQLRRGIEKLSVRIEADEKK--HLSAVAKLKESQRESDSLKDTVEtlerelersEENQELAILDSEN---- 2107
Cdd:COG4913 618 ELAELEEELAEAEERLEALEAELDALQERreALQRLAEYSWDEIDVASAEREIA---------ELEAELERLDASSddla 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2108 -LKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAM 2186
Cdd:COG4913 689 aLEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
170
....*....|....*..
gi 568911612 2187 LMLQMQLKELREEVAAL 2203
Cdd:COG4913 769 ENLEERIDALRARLNRA 785
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1854-2700 |
3.51e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1854 EVVQAEKLCLERDTESKQKVIIDLKE---ELFTVISERNRLRE------ELDNVSKESKA-LDQMSKKMKEKIEELESHQ 1923
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKElekKHQQLCEEKNALQEqlqaetELCAEAEEMRArLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1924 RESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNF 2003
Cdd:pfam01576 85 EEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2004 QIKLTESECEKQTISKalevaLKEKGEFAvqlssaqeevhqlrrgIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDT 2083
Cdd:pfam01576 165 TSNLAEEEEKAKSLSK-----LKNKHEAM----------------ISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQ 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2084 VetlerelerseenqelaildsENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSS 2163
Cdd:pfam01576 224 I---------------------AELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLES 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2164 LRRLLEEKEQARVQMEEdsksamlmlqmQLKELREEvaaLCNDQETLKAQEQSLDQPGEEVHHLKSSI----RKLKVHID 2239
Cdd:pfam01576 283 ERAARNKAEKQRRDLGE-----------ELEALKTE---LEDTLDTTAAQQELRSKREQEVTELKKALeeetRSHEAQLQ 348
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2240 ADEKKHQNILEQLKESKHHADLLKDRVENLEQEL-----ILSEKNMIFQAEKSKAEIQTLKSEIQrmaqnLQDLQLELIS 2314
Cdd:pfam01576 349 EMRQKHTQALEELTEQLEQAKRNKANLEKAKQALesenaELQAELRTLQQAKQDSEHKRKKLEGQ-----LQELQARLSE 423
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2315 TRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQ----------TQLKELNETVVSLCN 2384
Cdd:pfam01576 424 SERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQeetrqklnlsTRLRQLEDERNSLQE 503
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2385 DQEVSKTKEQNLGSQVQTLEL----------EKAQLLQDLGEAKNKYiifQSSVNALTQEVEAGKQKLEKGEKEIRTLKE 2454
Cdd:pfam01576 504 QLEEEEEAKRNVERQLSTLQAqlsdmkkkleEDAGTLEALEEGKKRL---QRELEALTQQLEEKAAAYDKLEKTKNRLQQ 580
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2455 QLK-------SQEQLVCKLaqvEGEQQLWQKQKLELRNVTMALEQKVQVLQSENN-------TLQSTYEALQNSHKSLES 2520
Cdd:pfam01576 581 ELDdllvdldHQRQLVSNL---EKKQKKFDQMLAEEKAISARYAEERDRAEAEAReketralSLARALEEALEAKEELER 657
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2521 ELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKEL 2600
Cdd:pfam01576 658 TNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARD 737
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2601 QRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNV---------DEVMTENKALKETLEEKVKEADKY 2671
Cdd:pfam01576 738 EQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAqidaankgrEEAVKQLKKLQAQMKDLQRELEEA 817
|
890 900
....*....|....*....|....*....
gi 568911612 2672 LDKYCSLLISHEELEKAKEILEIEVARLK 2700
Cdd:pfam01576 818 RASRDEILAQSKESEKKLKNLEAELLQLQ 846
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2140-2357 |
4.72e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2140 RENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAML-----MLQMQLKELREEVAALCNDQETLKAQ- 2213
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLseeakLLLQQLSELESQLAEARAELAEAEARl 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2214 ---EQSLDQPGEEVHHLKSS--IRKLKVHIDADEKKHQNILEQLKESkhHADL--LKDRVENLEQELilseknmifqAEK 2286
Cdd:COG3206 243 aalRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPN--HPDViaLRAQIAALRAQL----------QQE 310
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568911612 2287 SKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQM 2357
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAE 381
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
494-1176 |
4.78e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 4.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 494 LLKKREHHIDQLNNKLNKIEKEFETllsalelkkkeceeLKEEKNQISFWKIDSEKLINQIESEKEILLGKINHLETSLK 573
Cdd:TIGR04523 27 IANKQDTEEKQLEKKLKTIKNELKN--------------KEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 574 TqqvspdSNERIRTLEMERENFTVEIKNLQSMLDSKMVEI---KTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTG 650
Cdd:TIGR04523 93 K------NKDKINKLNSDLSKINSEIKNDKEQKNKLEVELnklEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 651 QVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLL--------KSRGSSLVTNEDNQRSSEDNQRSSEDNQRGSLAFE 722
Cdd:TIGR04523 167 QKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlkkkiqKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTT 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 723 QQPAVSDSFANVMGRKGSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQmnsdlQMRCEELLQIKGEVEENLS 802
Cdd:TIGR04523 247 EISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN-----QKEQDWNKELKSELKNQEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 803 KAEQIhQNFVAETNQCISKLQEDaavhqniVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNcllEGTLKELQlls 882
Cdd:TIGR04523 322 KLEEI-QNQISQNNKIISQLNEQ-------ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEN---QSYKQEIK--- 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 883 dTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQYKqerlQLLQR 962
Cdd:TIGR04523 388 -NLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK----NLDNT 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 963 CEETEAVLEDLRGNYKTAQENNAKLECMLSECTALCENRKNELEQLKEtfakEQQEFLTKLAFAEEQNRKLMLE-LEIEQ 1041
Cdd:TIGR04523 463 RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEE----KVKDLTKKISSLKEKIEKLESEkKEKES 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1042 QTVRSEITNTNKHSMSATDGLRQECLTLNEEQNEQQNEVSNLTHENEQLMELTQTKhdsylavepvensvKATEDEIGKS 1121
Cdd:TIGR04523 539 KISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQK--------------EKEKKDLIKE 604
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 568911612 1122 SSQYQMDIDTKDISLDSYKAQLVHLEALVRILEVQLDQSEEENKKLHLELQTIRE 1176
Cdd:TIGR04523 605 IEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRN 659
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1827-2571 |
5.22e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.94 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1827 DMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLER---DTESKQKVIIDLKEELFTVISERNRLREEL-DNVSKES 1902
Cdd:pfam01576 360 ELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQakqDSEHKRKKLEGQLQELQARLSESERQRAELaEKLSKLQ 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1903 KALDQMSKKMkekiEELESHQRESLRHIGAVESEVKDKADLIQ-------TLSFNVGELTKDKAHLQEQLQNLQNDSQEL 1975
Cdd:pfam01576 440 SELESVSSLL----NEAEGKNIKLSKDVSSLESQLQDTQELLQeetrqklNLSTRLRQLEDERNSLQEQLEEEEEAKRNV 515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1976 SLAIGELEIQIGQLNKE--------------KESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEE 2041
Cdd:pfam01576 516 ERQLSTLQAQLSDMKKKleedagtlealeegKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQL 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2042 VHQLRR---------GIEKLSVRIEADEKKHLSAVAKLKESQ-----RESDSLKDTVETLERELERseenqelaildsen 2107
Cdd:pfam01576 596 VSNLEKkqkkfdqmlAEEKAISARYAEERDRAEAEAREKETRalslaRALEEALEAKEELERTNKQ-------------- 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2108 LKAEVETLKAQKD-------EMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEE 2180
Cdd:pfam01576 662 LRAEMEDLVSSKDdvgknvhELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGE 741
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2181 DSKSAmlmLQMQLKELREEVaalcNDQETLKAQEQSLDQpgeevhHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHad 2260
Cdd:pfam01576 742 EKRRQ---LVKQVRELEAEL----EDERKQRAQAVAAKK------KLELDLKELEAQIDAANKGREEAVKQLKKLQAQ-- 806
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2261 lLKDRVENLEqELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETIN 2340
Cdd:pfam01576 807 -MKDLQRELE-EARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEK 884
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2341 SSIENLLKDKEQEKvqmkEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGE---- 2416
Cdd:pfam01576 885 RRLEARIAQLEEEL----EEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEmegt 960
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2417 AKNKYiifQSSVNALTQEVEAGKQKLEKGEKE-IRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQ-KV 2494
Cdd:pfam01576 961 VKSKF---KSSIAALEAKIAQLEEQLEQESRErQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRMKQlKR 1037
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568911612 2495 QVLQSEnntlqstyealqnshksleselgliklekvalvERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRL 2571
Cdd:pfam01576 1038 QLEEAE---------------------------------EEASRANAARRKLQRELDDATESNESMNREVSTLKSKL 1081
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
2098-2237 |
5.41e-04 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 45.04 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2098 QELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLvTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQ 2177
Cdd:COG1566 71 QVLARLDPTDLQAALAQAEAQLAAAEAQLARLEAEL-GAEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQE 149
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568911612 2178 MEEdSKSAMLMLQMQLKELREEVAALCND---QETLKAQEQSLDQPGEEVHHLKSSIRKLKVH 2237
Cdd:COG1566 150 LDE-ARAALDAAQAQLEAAQAQLAQAQAGlreEEELAAAQAQVAQAEAALAQAELNLARTTIR 211
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2061-2556 |
5.57e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 5.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2061 KKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQElailDSENLKAEVETLKAQKDEMTKSLRIFELDLvtvrtER 2140
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEE----ELEELEAELEELREELEKLEKLLQLLPLYQ-----EL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2141 ENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVqmeedsksamlmlqmQLKELREEVAALCndQETLKAQEQSLDQP 2220
Cdd:COG4717 135 EALEAELAELPERLEELEERLEELRELEEELEELEA---------------ELAELQEELEELL--EQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2221 GEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKEskhhadlLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQR 2300
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQ-------LENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2301 MAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLlkdKEQEKVQMKEEAKITVEMLQTQLKELNETVV 2380
Cdd:COG4717 271 LILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL---EEEELEELLAALGLPPDLSPEELLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2381 SLcnDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGeaknkyiifQSSVNALTQEVEAgKQKLEKGEKEIRTLKEQLKSQE 2460
Cdd:COG4717 348 EL--QELLREAEELEEELQLEELEQEIAALLAEAG---------VEDEEELRAALEQ-AEEYQELKEELEELEEQLEELL 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2461 QLVCKLAQVEGEQQLwqKQKLElrnvtmALEQKVQVLQSENNTLQSTYEALQNSHKSLESElgliklekvalvERVSTIS 2540
Cdd:COG4717 416 GELEELLEALDEEEL--EEELE------ELEEELEELEEELEELREELAELEAELEQLEED------------GELAELL 475
|
490
....*....|....*.
gi 568911612 2541 GKEAELQRELRDMLQK 2556
Cdd:COG4717 476 QELEELKAELRELAEE 491
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
555-1292 |
5.90e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 555 ESEKEILLGKINHLETSLKTQQVSPDSNERIR---TLEMERENFTVEIKNLQ-SMLDSKMVEIKTQKQAYLELQQKSESS 630
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELeelTAELQELEEKLEELRLEvSELEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 631 DQKHQKEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLLKsrgsslvtnednqrssEDNQRS 710
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE----------------ELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 711 SEDNQRGSLAFEQQPAVSDSFANVMGRKGSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQmnSDLQMRCEEL 790
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 791 LQIKGEVEENLSKAEQIHQNFVAETNQCISKLQEdaavhqniVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCL 870
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDA--------AERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 871 LEGTLkelQLLSDTLSSEKK-----------EMNSIISlskKNIEELTQANEALKEVNE--------------ALEQEKM 925
Cdd:TIGR02168 518 LSGIL---GVLSELISVDEGyeaaieaalggRLQAVVV---ENLNAAKKAIAFLKQNELgrvtflpldsikgtEIQGNDR 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 926 NLLQKHEKITSCIAEQERSIAELSDQYkQERLQLLQRCEETEAVLEDLRgnYKTAQENNAKLECML-----------SEC 994
Cdd:TIGR02168 592 EILKNIEGFLGVAKDLVKFDPKLRKAL-SYLLGGVLVVDDLDNALELAK--KLRPGYRIVTLDGDLvrpggvitggsAKT 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 995 TALCENRKNELEQLKEtfakeqqefltKLAFAEEQNRklmlELEIEQQTVRSEITNTNKhsmsATDGLRQECLTLNEEQN 1074
Cdd:TIGR02168 669 NSSILERRREIEELEE-----------KIEELEEKIA----ELEKALAELRKELEELEE----ELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1075 EQQNEVSNLTHENEQLMELTQTKHdsyLAVEPVENSVKATEDEIGKSSSQyqmdidtkdisLDSYKAQLVHLEALVRILE 1154
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLS---KELTELEAEIEELEERLEEAEEE-----------LAEAEAEIEELEAQIEQLK 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1155 VQLDQSEEENKKLHLELQTIREELETKSSQDPQSQARtgLKDCDTAEEKYVSMLQELSASQNENAHLQCSLQTAVNKLNE 1234
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLERR--IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 568911612 1235 lgkMCDVLRVEKLQLESELNDSRTEcitaTSQMTAEVEKLVSEMKMLNHESALSQNEL 1292
Cdd:TIGR02168 874 ---ELEALLNERASLEEALALLRSE----LEELSEELRELESKRSELRRELEELREKL 924
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2038-2710 |
6.99e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 6.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2038 AQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERE--LERSEENQELAILDSENLKAEVETL 2115
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLlyLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2116 KAQKDEMTKSlrifeldlvtvrterenlakqlQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKE 2195
Cdd:pfam02463 254 ESSKQEIEKE----------------------EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2196 LREEVAALCNDQETLKAQEQSLDQPGEEVHH-LKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELI 2274
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKeLKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2275 LSEKNMIFQAEKSKA--EIQTLKSEIQRMAQNLQDLQL-ELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKE 2351
Cdd:pfam02463 392 LKEEELELKSEEEKEaqLLLELARQLEDLLKEEKKEELeILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2352 QEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKY-------IIF 2424
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYkvaistaVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2425 QSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTL 2504
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2505 QsTYEALQNSHKSLESELGLIKLEKVALVERVS-TISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQ 2583
Cdd:pfam02463 632 T-ELTKLKESAKAKESGLRKGVSLEEGLAEKSEvKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2584 NTKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEE 2663
Cdd:pfam02463 711 ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEE 790
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 568911612 2664 KVKEADKYLDkycsllishEELEKAKEILEIEVARLKSRQSRQDLQS 2710
Cdd:pfam02463 791 EKEEKLKAQE---------EELRALEEELKEEAELLEEEQLLIEQEE 828
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
223-519 |
7.54e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 223 QGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERilnKTRDEVVRSTAQYDQAAAKctTLEQKLKTLTEElscHRQNAESA 302
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAE---EDKNMALRKAEEAKKAEEA--RIEEVMKLYEEE---KKMKAEEA 1612
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 303 KRSLEQRIKEKEKELQEELSRQHQsfqaldseytQMKTRLTQELQQVKHLHStlqlELEKVTSVKQQLERNLEEIRLKLS 382
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAEEEKKKVE----------QLKKKEAEEKKKAEELKK----AEEENKIKAAEEAKKAEEDKKKAE 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 383 RAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQ-RTREVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEimlrdl 461
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEkKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD------ 1752
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 568911612 462 QEKLNQQENSLTLEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETL 519
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANI 1810
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1689-2709 |
8.06e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.43 E-value: 8.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1689 MDVLEDQGSIQNLQLQKDTLNENLRLLPEvedwdKKVESLLNEIMEADSKLSLQEVQLKMKIATCI--QLEKIVKDLRKE 1766
Cdd:TIGR01612 689 IDNTEDKAKLDDLKSKIDKEYDKIQNMET-----ATVELHLSNIENKKNELLDIIVEIKKHIHGEInkDLNKILEDFKNK 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1767 KADLSEKLE--SLPCNQEVCLRVERSEEDLGFNLDMGANELLSKSTKDNATNTEDnYKEKFLDMERELTRIKSEKANIEH 1844
Cdd:TIGR01612 764 EKELSNKINdyAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKE-YIKTISIKEDEIFKIINEMKFMKD 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1845 HILS---VETNLEVVQAEKLCLERD--TESKQKVIIDLKEELF-----------TVISERNR-LREELDNVS--KESKAL 1905
Cdd:TIGR01612 843 DFLNkvdKFINFENNCKEKIDSEHEqfAELTNKIKAEISDDKLndyekkfndskSLINEINKsIEEEYQNINtlKKVDEY 922
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1906 DQMSKKMKEKIEELESHQR----------ESLRHIGAVESEVKDKADliQTLSFNVGELtkDKAHLQEQLQNLQNDSQEL 1975
Cdd:TIGR01612 923 IKICENTKESIEKFHNKQNilkeilnkniDTIKESNLIEKSYKDKFD--NTLIDKINEL--DKAFKDASLNDYEAKNNEL 998
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1976 slaigeleiqIGQLNKEKESLVKESQN-FQIKLTESECEKQTISKALEVALKEKG--EFAVQLS--SAQEEVHQL-RRGI 2049
Cdd:TIGR01612 999 ----------IKYFNDLKANLGKNKENmLYHQFDEKEKATNDIEQKIEDANKNIPniEIAIHTSiyNIIDEIEKEiGKNI 1068
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2050 EKLSVRIEADEKKHLSAVAKLKESQR-----------------ESDSLKDTVETLERELERSEENQELAILDSEN----L 2108
Cdd:TIGR01612 1069 ELLNKEILEEAEINITNFNEIKEKLKhynfddfgkeenikyadEINKIKDDIKNLDQKIDHHIKALEEIKKKSENyideI 1148
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2109 KAEVETL-----KAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRR--------------LLE 2169
Cdd:TIGR01612 1149 KAQINDLedvadKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEvkginlsygknlgkLFL 1228
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2170 EKEQARVQMEEDSKSAMLMLQMQLKELREEVAALCND---QETLKAQEQSLD--QPGEEVHHLKSS--------IRKLKV 2236
Cdd:TIGR01612 1229 EKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEmgiEMDIKAEMETFNisHDDDKDHHIISKkhdenisdIREKSL 1308
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2237 HIDADEKKHQNILEQLKESKHHadLLKDRVENLEQELILSE-KNM--IFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELi 2313
Cdd:TIGR01612 1309 KIIEDFSEESDINDIKKELQKN--LLDAQKHNSDINLYLNEiANIynILKLNKIKKIIDEVKEYTKEIEENNKNIKDEL- 1385
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2314 strSENENLMKELKKEqervSDLETINSSIENLLKDKE-QEKVQMKEEAKITVEMLQTQL-------KELNETVVSLCND 2385
Cdd:TIGR01612 1386 ---DKSEKLIKKIKDD----INLEECKSKIESTLDDKDiDECIKKIKELKNHILSEESNIdtyfknaDENNENVLLLFKN 1458
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2386 QEVSKTKEQN-LGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLkSQEQLVC 2464
Cdd:TIGR01612 1459 IEMADNKSQHiLKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKY-SALAIKN 1537
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2465 KLAQVEGEQQLWQKQKLELRNVTM----ALEQKVQVLQSENNTLQstyEALQNSHKSLESELGlIKLEkvalVERVSTIS 2540
Cdd:TIGR01612 1538 KFAKTKKDSEIIIKEIKDAHKKFIleaeKSEQKIKEIKKEKFRIE---DDAAKNDKSNKAAID-IQLS----LENFENKF 1609
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2541 GKEAELQRELRDMLQKTtqlsEDYNKEKNRLTEevevlreelqNTKAAHLKSVNQLEKELQRaqgkiklMLKSCRQLEGE 2620
Cdd:TIGR01612 1610 LKISDIKKKINDCLKET----ESIEKKISSFSI----------DSQDTELKENGDNLNSLQE-------FLESLKDQKKN 1668
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2621 KEMLQKELSQLEaaqqqragSLVDSNVDEVMTENKALKETLEEKVKEADKyldkycsllISHEELEKAKEILEIEVARLK 2700
Cdd:TIGR01612 1669 IEDKKKELDELD--------SEIEKIEIDVDQHKKNYEIGIIEKIKEIAI---------ANKEEIESIKELIEPTIENLI 1731
|
....*....
gi 568911612 2701 SRQSRQDLQ 2709
Cdd:TIGR01612 1732 SSFNTNDLE 1740
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
1934-2380 |
8.83e-04 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 45.15 E-value: 8.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1934 ESEVKDKADLIQTLSFNVGEL----TKDKAHLQEQLQNLQNDSQELSLAIGELEIQ-IGQLNKEKESLVKESQNFQIKLT 2008
Cdd:pfam18971 395 QEEIRNKVDFMEFLAQNNTKLdnlsEKEKEKFQNEIEDFQKDSKAYLDALGNDRIAfVSKKDTKHSALITEFNNGDLSYT 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2009 ESECEKQTiSKALEV--------ALKEKGEFAVQLSS---------------AQEEVHQLRRGIEKLSV---------RI 2056
Cdd:pfam18971 475 LKDYGKKA-DKALDReknvtlqgSLKHDGVMFVDYSNfkytnasknpnkgvgATNGVSHLEAGFNKVAVfnlpdlnnlAI 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2057 EADEKKHLSAVAKLKE-SQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDeMTKSLRifeldlvt 2135
Cdd:pfam18971 554 TSFVRRNLENKLTAKGlSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKD-LEKSLR-------- 624
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2136 vrtERENLAKQLQEKQsrvseldERCSSLRRLLEEKEQARVQMEEdsksamlMLQMQLKELREEVAALCNDQETLKAQEQ 2215
Cdd:pfam18971 625 ---KREHLEKEVEKKL-------ESKSGNKNKMEAKAQANSQKDE-------IFALINKEANRDARAIAYTQNLKGIKRE 687
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2216 ---SLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKD---RVENLEQEliLSEknmiFQAEKSK- 2288
Cdd:pfam18971 688 lsdKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEwisKVENLNAA--LNE----FKNGKNKd 761
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2289 -AEIQTLKSEIQRMAQNLqdLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKI--TV 2365
Cdd:pfam18971 762 fSKVTQAKSDLENSVKDV--IINQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTgkNS 839
|
490
....*....|....*
gi 568911612 2366 EMLQTQLKELNETVV 2380
Cdd:pfam18971 840 ELYQSVKNSVNKTLV 854
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1885-2057 |
8.84e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 8.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1885 ISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQ--RESLRHIGAVESEVKDKADLIQTLSFNVGELtkdkAHLQ 1962
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAeySWDEIDVASAEREIAELEAELERLDASSDDL----AALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1963 EQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTE-SECEKQTISKALEVALKEKGEFAVQ---LSSA 2038
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAAALGDAVErelRENL 771
|
170
....*....|....*....
gi 568911612 2039 QEEVHQLRRGIEKLSVRIE 2057
Cdd:COG4913 772 EERIDALRARLNRAEEELE 790
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2032-2278 |
1.01e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2032 AVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELErsEENQELAILDSENLKAE 2111
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA--ALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2112 vETLKAQKDEMTKSLRifeldlVTVRTERENLAKQLQeKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSamlmLQM 2191
Cdd:COG4942 97 -AELEAQKEELAELLR------ALYRLGRQPPLALLL-SPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE----LAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2192 QLKELREEVAALCNDQETLKAQEQSLDQpgeevhhLKSSIRKLKVHIDADEKKHQNILEQLKESkhhADLLKDRVENLEQ 2271
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEA-------LKAERQKLLARLEKELAELAAELAELQQE---AEELEALIARLEA 234
|
....*..
gi 568911612 2272 ELILSEK 2278
Cdd:COG4942 235 EAAAAAE 241
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2015-2453 |
1.01e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2015 QTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERS 2094
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2095 EENQELaildsENLKAEVETLKAQKDEMTKSLRifelDLVTVRTERENLAKQLQEKQSRVSELDERCS-----SLRRLLE 2169
Cdd:COG4717 129 PLYQEL-----EALEAELAELPERLEELEERLE----ELRELEEELEELEAELAELQEELEELLEQLSlateeELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2170 EKEQARVQMEEdSKSAMLMLQMQLKELREEVAALCNDQETLKAQEQ---------------SLDQPGEEVHHLKSSIRKL 2234
Cdd:COG4717 200 ELEELQQRLAE-LEEELEEAQEELEELEEELEQLENELEAAALEERlkearlllliaaallALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2235 -----------KVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQ 2303
Cdd:COG4717 279 lflvlgllallFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2304 nlQDLQLELISTRSENENLMKELKkeqerVSDLETINSSIENLlkdkeQEKVQMKEEAKITVEMLQTQLKELNETVVSLc 2383
Cdd:COG4717 359 --LEEELQLEELEQEIAALLAEAG-----VEDEEELRAALEQA-----EEYQELKEELEELEEQLEELLGELEELLEAL- 425
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568911612 2384 nDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKN--KYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLK 2453
Cdd:COG4717 426 -DEEELEEELEELEEELEELEEELEELREELAELEAelEQLEEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2106-2337 |
1.15e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2106 ENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQmeedsksa 2185
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE-------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2186 mlmLQMQLKELREEVAALcndqetLKAQEQSLDQP-------GEEVHHLKSSIRKLKVHIDADekkhQNILEQLKESkhh 2258
Cdd:COG4942 95 ---LRAELEAQKEELAEL------LRALYRLGRQPplalllsPEDFLDAVRRLQYLKYLAPAR----REQAEELRAD--- 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568911612 2259 adllKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLE 2337
Cdd:COG4942 159 ----LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
231-442 |
1.17e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 231 SQVNKCQDLQLQLEKTKVELIEKERILNKTR-------DEVVRSTAQYDQAAAKCTTLEQKLKTLTEELSCHRQNAESAK 303
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKkeekallKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 304 RSLEQRIKEKEKELQEELSRQHQSFQAL-----DSEYTQMKTRLTQEL-QQVKHLHSTLQLELEKVTSVKQQLERNLEEI 377
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLaPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568911612 378 RLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQN 442
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
2216-2329 |
1.20e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2216 SLDQPGEEVHHLKSSIRKLKVHIDADEKkhqnilEQLKESKHHADLLKDRVENLEQEliLSEKNMIFQAEKSK-AEIQTL 2294
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKK------EQDEASFERLAELRDELAELEEE--LEALKARWEAEKELiEEIQEL 476
|
90 100 110
....*....|....*....|....*....|....*
gi 568911612 2295 KSEIQRMAQNLQDLQLELISTRSENENLMKELKKE 2329
Cdd:COG0542 477 KEELEQRYGKIPELEKELAELEEELAELAPLLREE 511
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1850-2039 |
1.32e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1850 ETNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKAL----DQMSKKMKEKIEELESHQRE 1925
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLqaeiAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1926 S----------------------LRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELE 1983
Cdd:COG3883 95 LyrsggsvsyldvllgsesfsdfLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568911612 1984 IQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQ 2039
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2283-2702 |
1.33e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2283 QAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKeQERVSDLETINSSIENLLKDKEQEKVQMKE--E 2360
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL-LPLYQELEALEAELAELPERLEELEERLEElrE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2361 AKITVEMLQTQLKELNETVVSLCNDQEVSKTKE-QNLGSQVQTLELEKAQLLQDLGEAKNKyiifqssVNALTQEVEAGK 2439
Cdd:COG4717 161 LEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEE-------LEELEEELEQLE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2440 QKLEKGEKEirtlkEQLKSQEQLVCKLAQV---EGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHK 2516
Cdd:COG4717 234 NELEAAALE-----ERLKEARLLLLIAAALlalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2517 SLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLtEEVEVLREELQNTKAAHLKSVNQL 2596
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL-QLEELEQEIAALLAEAGVEDEEEL 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2597 EKELQRAQgkiklmlkSCRQLEGEKEMLQkelSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEEKVKEADKYLDKYC 2676
Cdd:COG4717 388 RAALEQAE--------EYQELKEELEELE---EQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELA 456
|
410 420
....*....|....*....|....*...
gi 568911612 2677 SLLISHEELEKAKEI--LEIEVARLKSR 2702
Cdd:COG4717 457 ELEAELEQLEEDGELaeLLQELEELKAE 484
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2440-2643 |
1.49e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2440 QKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQsenntlqstyeaLQNSHKSLE 2519
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP------------LYQELEALE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2520 SELGLIKLEKVALVERVSTIsgkeAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKE 2599
Cdd:COG4717 139 AELAELPERLEELEERLEEL----RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEE 214
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568911612 2600 LQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLV 2643
Cdd:COG4717 215 LEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAL 258
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
2290-2571 |
1.59e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 44.27 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2290 EIQtLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETInssIENLlkdkeqekvqmkeeAKITVEmLQ 2369
Cdd:PRK10929 25 EKQ-ITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQV---IDNF--------------PKLSAE-LR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2370 TQLKELNETVVSLCNDQEVSKTKEQNLgsQVQTLELEKAQLLQdlgEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEI 2449
Cdd:PRK10929 86 QQLNNERDEPRSVPPNMSTDALEQEIL--QVSSQLLEKSRQAQ---QEQDRAREISDSLSQLPQQQTEARRQLNEIERRL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2450 RTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSEnnTLQSTYEALQNSHKSLESELGLIKLEK 2529
Cdd:PRK10929 161 QTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSE--LAKKRSQQLDAYLQALRNQLNSQRQRE 238
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568911612 2530 VAL-VERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRL 2571
Cdd:PRK10929 239 AERaLESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRM 281
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
789-993 |
1.67e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 789 ELLQIKGEVEENLSKAEQIhQNFVAETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKN- 867
Cdd:COG3883 17 QIQAKQKELSELQAELEAA-QAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAl 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 868 ----------NCLLEGT-----LKELQLLSDTLSSEKKEMNSIislsKKNIEELTQANEALKEVNEALEQEKMNLLQKHE 932
Cdd:COG3883 96 yrsggsvsylDVLLGSEsfsdfLDRLSALSKIADADADLLEEL----KADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568911612 933 KITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSE 993
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1860-2512 |
2.06e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1860 KLCLERDTESKQKVIIDLKEELFTVISErnrLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKD 1939
Cdd:pfam01576 333 KKALEEETRSHEAQLQEMRQKHTQALEE---LTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKK 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1940 KADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISK 2019
Cdd:pfam01576 410 LEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLST 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2020 alevalkekgefavQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQE 2099
Cdd:pfam01576 490 --------------RLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELE 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2100 LAILDSENLKAEVETLKAQKDEMTKslrifELDLVTVRTERE-NLAKQLQEKQSRVSEL--DERCSSLRRlLEEKEQARV 2176
Cdd:pfam01576 556 ALTQQLEEKAAAYDKLEKTKNRLQQ-----ELDDLLVDLDHQrQLVSNLEKKQKKFDQMlaEEKAISARY-AEERDRAEA 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2177 QMEEDSKSAmLMLQMQLKELREEVAALCNDQETLKAQEQSL----DQPGEEVHHLKSSIRKLKvhidadekkhqnilEQL 2252
Cdd:pfam01576 630 EAREKETRA-LSLARALEEALEAKEELERTNKQLRAEMEDLvsskDDVGKNVHELERSKRALE--------------QQV 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2253 KESKHHADLLKDRVENLEQELILSEKNMifQAEKSKAEIQTLKSEIQ------RMAQNLQDLQLELISTRSENENLMKEL 2326
Cdd:pfam01576 695 EEMKTQLEELEDELQATEDAKLRLEVNM--QALKAQFERDLQARDEQgeekrrQLVKQVRELEAELEDERKQRAQAVAAK 772
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2327 KKEQERVSDLEtinSSIENLLKDKEQEKVQMKEeakitvemLQTQLKELNETV--VSLCNDQEVSKTKEQNlgSQVQTLE 2404
Cdd:pfam01576 773 KKLELDLKELE---AQIDAANKGREEAVKQLKK--------LQAQMKDLQRELeeARASRDEILAQSKESE--KKLKNLE 839
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2405 LEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcklaQVEGEQQLWQKQKLELR 2484
Cdd:pfam01576 840 AELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEE------ELEEEQSNTELLNDRLR 913
|
650 660
....*....|....*....|....*...
gi 568911612 2485 NVTMALEQKVQVLQSENNTLQSTYEALQ 2512
Cdd:pfam01576 914 KSTLQVEQLTTELAAERSTSQKSESARQ 941
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
2226-2483 |
2.45e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2226 HLKSSIRKL----KVHIDadEKKHQNILEQLKESKHHADLLKDRVENLEQeliLSEKNMIFQAEKSKAEIQTLKSEIQRM 2301
Cdd:PRK05771 17 YKDEVLEALhelgVVHIE--DLKEELSNERLRKLRSLLTKLSEALDKLRS---YLPKLNPLREEKKKVSVKSLEELIKDV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2302 AQNLQDLQ---LELISTRSENENLMKELKKEQERVSDLETINSSIENLLKdkeqekvqmKEEAKITVEMLQTQLKELNET 2378
Cdd:PRK05771 92 EEELEKIEkeiKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLG---------FKYVSVFVGTVPEDKLEELKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2379 VVSLCNDQEVSKTKEQN----LGSQVQTLELEKaqLLQDLGEAKNKYiifqSSVNALTQEVEAGKQKLEKGEKEIRTLKE 2454
Cdd:PRK05771 163 ESDVENVEYISTDKGYVyvvvVVLKELSDEVEE--ELKKLGFERLEL----EEEGTPSELIREIKEELEEIEKERESLLE 236
|
250 260
....*....|....*....|....*....
gi 568911612 2455 QLKSQEQLVCKLAQVEGEQQLWQKQKLEL 2483
Cdd:PRK05771 237 ELKELAKKYLEELLALYEYLEIELERAEA 265
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1816-2671 |
2.52e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1816 NTEDNYKEKFLDMERELTRIKSEKANIEHH---ILSVETNLEVVQAEKLCLERD----TESKQKVIIDLKEELFTVISER 1888
Cdd:TIGR00606 231 AQLESSREIVKSYENELDPLKNRLKEIEHNlskIMKLDNEIKALKSRKKQMEKDnselELKMEKVFQGTDEQLNDLYHNH 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1889 NR----LREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVG-ELTKDKAHLQE 1963
Cdd:TIGR00606 311 QRtvreKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLElDGFERGPFSER 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1964 QLQNLqndsqeLSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVH 2043
Cdd:TIGR00606 391 QIKNF------HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2044 QLRRGIEKLsVRIEADEKKHLSAVAKLKESQRESDSLKDTV----ETLERELERSEENQELAILDSENlKAEVETLKAQK 2119
Cdd:TIGR00606 465 QLEGSSDRI-LELDQELRKAERELSKAEKNSLTETLKKEVKslqnEKADLDRKLRKLDQEMEQLNHHT-TTRTQMEMLTK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2120 DEMTKSLRIFELD---------LVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQM--EEDSKSAMLM 2188
Cdd:TIGR00606 543 DKMDKDEQIRKIKsrhsdeltsLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHInnELESKEEQLS 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2189 --------------LQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLkvhIDADEKKHQNILEQLKE 2254
Cdd:TIGR00606 623 syedklfdvcgsqdEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPV---CQRVFQTEAELQEFISD 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2255 SKHHADLLKDRVENLEQELILSEKN---MIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLE---LISTRSENENLMKELKK 2328
Cdd:TIGR00606 700 LQSKLRLAPDKLKSTESELKKKEKRrdeMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDiqrLKNDIEEQETLLGTIMP 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2329 EQERVSDLETINSSIENL-LKDKEQEKVQMKEEAKITVEMLQTQLKELNETVvslcNDQEVSKTKEQNLGSQVQTLELEK 2407
Cdd:TIGR00606 780 EEESAKVCLTDVTIMERFqMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEK----QEKQHELDTVVSKIELNRKLIQDQ 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2408 AQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVT 2487
Cdd:TIGR00606 856 QEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETS 935
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2488 MALEQ-KVQVLQSENNTLQSTYEALQNS-HKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYN 2565
Cdd:TIGR00606 936 NKKAQdKVNDIKEKVKNIHGYMKDIENKiQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2566 KEKNRLTEEVEVLR-EELQNTKAAHLKSVNQLE-----KELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRA 2639
Cdd:TIGR00606 1016 WLQDNLTLRKRENElKEVEEELKQHLKEMGQMQvlqmkQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
890 900 910
....*....|....*....|....*....|..
gi 568911612 2640 GSLVDSNVDEVMTENKalkeTLEEKVKEADKY 2671
Cdd:TIGR00606 1096 FRDAEEKYREMMIVMR----TTELVNKDLDIY 1123
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1880-2059 |
2.58e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1880 ELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKa 1959
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1960 hlqeQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEkgefavqlssAQ 2039
Cdd:COG1579 90 ----EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE----------LE 155
|
170 180
....*....|....*....|
gi 568911612 2040 EEVHQLRRGIEKLSVRIEAD 2059
Cdd:COG1579 156 AELEELEAEREELAAKIPPE 175
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2283-2514 |
2.59e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2283 QAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLEtinssienllkdKEQEKVQmkeeak 2362
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQ------------AEIAEAE------ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2363 itvEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQ-VQTLeLEKAQLLQDLGEAKNKYIifqSSVNALTQEVEAGKQK 2441
Cdd:COG3883 79 ---AEIEERREELGERARALYRSGGSVSYLDVLLGSEsFSDF-LDRLSALSKIADADADLL---EELKADKAELEAKKAE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2442 LEKGEKEIRTLKEQLKS--------QEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQN 2513
Cdd:COG3883 152 LEAKLAELEALKAELEAakaeleaqQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
|
.
gi 568911612 2514 S 2514
Cdd:COG3883 232 A 232
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
757-1251 |
2.59e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 757 EHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIHQnfVAETNQCISKLQEDAAVHQNIVAET 836
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKE--KAEEYIKLSEFYEEYLDELREIEKR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 837 LATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKK----NIEELTQANEA 912
Cdd:PRK03918 316 LSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRltglTPEKLEKELEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 913 LKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELS----------------------DQYKQERLQLLQRCEETEAVL 970
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteehrkellEEYTAELKRIEKELKEIEEKE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 971 EDLRGNYKtaqennaKLECMLSECTALCENRK--NELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEI 1048
Cdd:PRK03918 476 RKLRKELR-------ELEKVLKKESELIKLKElaEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1049 TNTNkhsmsatdGLRQECLTLNEEQNEQQNEVSNLTHENEQLmeltqtkhdSYLAVEPVENSVKATEDeigksssqyqmd 1128
Cdd:PRK03918 549 EKLE--------ELKKKLAELEKKLDELEEELAELLKELEEL---------GFESVEELEERLKELEP------------ 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1129 IDTKDISLDSYKAQLVHLEALVRILEVQLDQSEEENKKLHLELQTIREELEtkssqdpQSQARTGLKDCDTAEEKYVSML 1208
Cdd:PRK03918 600 FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE-------ELEKKYSEEEYEELREEYLELS 672
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 568911612 1209 QELSASQNENAHLQCSLQTAVNKLNELGKMCDVLRVEKLQLES 1251
Cdd:PRK03918 673 RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2065-2346 |
2.67e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2065 SAVAKLKESQRESDSLKDTVETlerelerseenqelaildsenLKAEVETLKAQKDEMTKSLRIFElDLVTVRTERENLA 2144
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAE---------------------AEERLEALEAELDALQERREALQ-RLAEYSWDEIDVA 664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2145 ---KQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEdsksamlmLQMQLKELREEVAALCNDQETLKAQEQSLdqpg 2221
Cdd:COG4913 665 saeREIAELEAELERLDASSDDLAALEEQLEELEAELEE--------LEEELDELKGEIGRLEKELEQAEEELDEL---- 732
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2222 EEVHHLKSSIRKLKVHIDADEKKHQNILEQLkESKHHADL------LKDRVENLEQEL--ILSEKNMIFQAEKSKAEIqT 2293
Cdd:COG4913 733 QDRLEAAEDLARLELRALLEERFAAALGDAV-ERELRENLeeridaLRARLNRAEEELerAMRAFNREWPAETADLDA-D 810
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568911612 2294 LKS--EIQRMAQNLQDLQL--------ELISTRSENE--NLMKELKKEQERVSD-LETINSSIENL 2346
Cdd:COG4913 811 LESlpEYLALLDRLEEDGLpeyeerfkELLNENSIEFvaDLLSKLRRAIREIKErIDPLNDSLKRI 876
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
208-688 |
2.88e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 208 NQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLEQKLKT 287
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 288 LTEELSchrqnaeSAKRSLEQRIKEKEKELQEELSRQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVK 367
Cdd:TIGR04523 293 LKSEIS-------DLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQREL 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 368 QQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEM 447
Cdd:TIGR04523 366 EEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 448 KAKNTSQEIMLRDLQEKLNQQENSLtlEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETLlsalelkk 527
Cdd:TIGR04523 446 TNQDSVKELIIKNLDNTRESLETQL--KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL-------- 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 528 keceelkeeKNQISFWKIDSEKL---INQIESEKEILLGKINHLETSLKTQQVSPDSNERIRTLEmerenftvEIKNLQS 604
Cdd:TIGR04523 516 ---------TKKISSLKEKIEKLeseKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIE--------ELKQTQK 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 605 MLDSKmveiktQKQAYLELQQKsESSDQKHQKEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLR 684
Cdd:TIGR04523 579 SLKKK------QEEKQELIDQK-EKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIK 651
|
....
gi 568911612 685 DLLK 688
Cdd:TIGR04523 652 ETIK 655
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
2149-2266 |
3.08e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.15 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2149 EKQSRVSELDERCSSLRRLLEEKEQARvqMEEDSKSamlmlQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLK 2228
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALK--KEQDEAS-----FERLAELRDELAELEEELEALKARWEAEKELIEEIQELK 477
|
90 100 110
....*....|....*....|....*....|....*...
gi 568911612 2229 SSIRKLKVHIDADEKKHQNILEQLKEskhHADLLKDRV 2266
Cdd:COG0542 478 EELEQRYGKIPELEKELAELEEELAE---LAPLLREEV 512
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1829-1999 |
3.10e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1829 ERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLER---------DTESKQKVIIDLKEELftvisernrlrEELDNVS 1899
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswdeiDVASAEREIAELEAEL-----------ERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1900 KESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDK-----AHLQEQLQNLQNDSQE 1974
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLArlelrALLEERFAAALGDAVE 764
|
170 180
....*....|....*....|....*
gi 568911612 1975 LSLAiGELEIQIGQLNKEKESLVKE 1999
Cdd:COG4913 765 RELR-ENLEERIDALRARLNRAEEE 788
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1868-2390 |
3.25e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 3.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1868 ESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKE--KIEELESHQRESLRHIGAVE--SEVKDKADL 1943
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakKADEAKKKAEEAKKKADEAKkaAEAKKKADE 1514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1944 IQTL--SFNVGELTK-DKAHLQEQLQNLQNDSQELSLAIGElEIQIGQLNKEKESLVKESQNFQIKLTESE----CEKQT 2016
Cdd:PTZ00121 1515 AKKAeeAKKADEAKKaEEAKKADEAKKAEEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNMALRKAEeakkAEEAR 1593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2017 ISKALEVALKEKGEFAVQLSSAQEE---VHQLRRGiEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELER 2093
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAkikAEELKKA-EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2094 SEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRtERENLAKQLQEKQSRVSELDERCSSLRRlleEKEQ 2173
Cdd:PTZ00121 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK-KAEELKKAEEENKIKAEEAKKEAEEDKK---KAEE 1748
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2174 ARVQMEEDSKSAMLMLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEevhhlkssiRKLKVHIDADEkkhqNILEQLK 2253
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD---------KKIKDIFDNFA----NIIEGGK 1815
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2254 ESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERV 2333
Cdd:PTZ00121 1816 EGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDK 1895
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 568911612 2334 SDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSK 2390
Cdd:PTZ00121 1896 DDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREEIIKISKKDMCINDFSSK 1952
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
835-1259 |
3.69e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 835 ETLATLESKEKELQLLKEKLEAQQ-TEVQKLNKNNCLL---EGTLKELqllsDTLSSEKKEMNSIISLSKKNIEELTQAN 910
Cdd:PRK02224 206 ERLNGLESELAELDEEIERYEEQReQARETRDEADEVLeehEERREEL----ETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 911 EALKEVNEALEQEKMNLLQK-------HEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLE---DLRGNYKTA 980
Cdd:PRK02224 282 RDLRERLEELEEERDDLLAEaglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREdadDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 981 QENNAKLECMLSECTALCENRKNELEQLKE---------TFAKEQ----QEFLTKLAFAEEQNRKLMLELEIEQQTVRSE 1047
Cdd:PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEeieelrerfGDAPVDlgnaEDFLEELREERDELREREAELEATLRTARER 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1048 ItntNKHSMSATDGLRQECltlnEEQNEQQNEVSNLTHENEQLMELTQTKHDSYLAVEPVEN------SVKATEDEIGKS 1121
Cdd:PRK02224 442 V---EEAEALLEAGKCPEC----GQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEErleraeDLVEAEDRIERL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1122 SSQYQMD---IDTKDISLDSYKAQLVHLEALVRILEVQLDQSEEENKKLHLELQTIREELETKSSQdpqsqaRTGLKDCD 1198
Cdd:PRK02224 515 EERREDLeelIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK------LAELKERI 588
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568911612 1199 TAEEKYVSMLQELSASQNENAHLQCSLQTAVNKLNELGKMCDVLRVEKLQLESELNDSRTE 1259
Cdd:PRK02224 589 ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE 649
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
2108-2664 |
4.51e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.42 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2108 LKAEVETLKAQKDEMTKSlriFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAML 2187
Cdd:pfam05557 7 SKARLSQLQNEKKQMELE---HKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2188 MLQMQLKELREEVAALCNDQETLKAQEQsldqpgeEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVE 2267
Cdd:pfam05557 84 YLEALNKKLNEKESQLADAREVISCLKN-------ELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2268 NLE---QELILSEKNM------IFQAEKSKAEIQTLKSEIQRMAQNLQDLQ-----LELISTRSENENLMKE-------- 2325
Cdd:pfam05557 157 NLEkqqSSLAEAEQRIkelefeIQSQEQDSEIVKNSKSELARIPELEKELErlrehNKHLNENIENKLLLKEevedlkrk 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2326 ---LKKEQERVSDLETINSSIENLLKdkEQEKVQMKEEAKI-TVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQ 2401
Cdd:pfam05557 237 lerEEKYREEAATLELEKEKLEQELQ--SWVKLAQDTGLNLrSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARR 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2402 TLELEKAQLLQDLGEAKNKYII-------FQSSVNALTQEVEAGKQKLEKGEKEirtlkeqLKSQEQLVCKLAQVEGEQQ 2474
Cdd:pfam05557 315 ELEQELAQYLKKIEDLNKKLKRhkalvrrLQRRVLLLTKERDGYRAILESYDKE-------LTMSNYSPQLLERIEEAED 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2475 LWQKQKLELRNVTMALEQkvqvlqsenntLQSTYEALQNSHKSLESELGLIKlEKVALVERVSTISGKEaELQRELRDML 2554
Cdd:pfam05557 388 MTQKMQAHNEEMEAQLSV-----------AEEELGGYKQQAQTLERELQALR-QQESLADPSYSKEEVD-SLRRKLETLE 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2555 QKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQgkiklmlkscrqlegEKEMLQKELSQLEAA 2634
Cdd:pfam05557 455 LERQRLREQKNELEMELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRKN---------------QLEKLQAEIERLKRL 519
|
570 580 590
....*....|....*....|....*....|
gi 568911612 2635 QQQRAGSLVDSNVDEVMTENKALKETLEEK 2664
Cdd:pfam05557 520 LKKLEDDLEQVLRLPETTSTMNFKEVLDLR 549
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1879-2473 |
4.97e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1879 EELFTVISERNRLREELdNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDK 1958
Cdd:TIGR00618 310 QRIHTELQSKMRSRAKL-LMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1959 AHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEfAVQLSSA 2038
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIH-LQESAQS 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2039 QEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQR--ESDSLKDTVETLERELERSEENQELAILDS-ENLKAEVETL 2115
Cdd:TIGR00618 468 LKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCplCGSCIHPNPARQDIDNPGPLTRRMQRGEQTyAQLETSEEDV 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2116 KAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLkE 2195
Cdd:TIGR00618 548 YHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ-D 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2196 LREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEqLKESKHHADLLKDRVENLEQ--EL 2273
Cdd:TIGR00618 627 LQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLA-LQKMQSEKEQLTYWKEMLAQcqTL 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2274 ILSEKNMIFQAEKSKAEIQ-TLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETInssiENLLKDKEQ 2352
Cdd:TIGR00618 706 LRELETHIEEYDREFNEIEnASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA----ALQTGAELS 781
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2353 EKVQMKEEAKITVEMLQTQLKELNETVvslcndqevsktkEQNLGSQVQTLELEKAQLLQDLgeaknkyiifqssvnalt 2432
Cdd:TIGR00618 782 HLAAEIQFFNRLREEDTHLLKTLEAEI-------------GQEIPSDEDILNLQCETLVQEE------------------ 830
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 568911612 2433 qevEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQ 2473
Cdd:TIGR00618 831 ---EQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQ 868
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
837-1018 |
5.60e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 5.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 837 LATLESKEKELQLLKEKLEAQQTEVQKLNKnnclLEGTLKELQLLSDTLSSEKKEMNSIISLsKKNIEELTQANEALKEV 916
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEELEE----LEEELEELEAELEELREELEKLEKLLQL-LPLYQELEALEAELAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 917 NEALEQekmnLLQKHEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSECTA 996
Cdd:COG4717 145 PERLEE----LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180
....*....|....*....|..
gi 568911612 997 LCENRKNELEQLKETFAKEQQE 1018
Cdd:COG4717 221 ELEELEEELEQLENELEAAALE 242
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1874-2072 |
5.78e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 5.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1874 IIDLKEELFT-----VISERNRLREELDNV----SKESKALDQMSKKMKEKIEELESHQRESLrhiGAVESEVKDKADLI 1944
Cdd:PRK05771 33 IEDLKEELSNerlrkLRSLLTKLSEALDKLrsylPKLNPLREEKKKVSVKSLEELIKDVEEEL---EKIEKEIKELEEEI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1945 QTLSfnvGELTKDKAHLqEQLQNLQNDSQELSLAIGE--LEIQIGQLNKEKESLVK--ESQNFQIKLTESE--------C 2012
Cdd:PRK05771 110 SELE---NEIKELEQEI-ERLEPWGNFDLDLSLLLGFkyVSVFVGTVPEDKLEELKleSDVENVEYISTDKgyvyvvvvV 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568911612 2013 EKQTISKALEVALK---------EKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKE 2072
Cdd:PRK05771 186 LKELSDEVEEELKKlgferleleEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYE 254
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2034-2231 |
5.79e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2034 QLSSAQEEVHQLRRGIEKL-----------SVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAI 2102
Cdd:COG4913 236 DLERAHEALEDAREQIELLepirelaeryaAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2103 LDSENLKAEVETLKAQKDEmTKSLRIFELdlvtvRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDS 2182
Cdd:COG4913 316 ARLDALREELDELEAQIRG-NGGDRLEQL-----EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568911612 2183 KSAMLMLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSI 2231
Cdd:COG4913 390 AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNI 438
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
352-640 |
5.86e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 5.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 352 LHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQasqvaenelrrsseEMKKENSLIRSQSEQRTrevchLEEELG 431
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALE--------------EFRQKNGLVDLSEEAKL-----LLQQLS 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 432 KVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEKLKLALADLERQRncsQDLLKK-REHH--IDQLNNK 508
Cdd:COG3206 223 ELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAEL---AELSARyTPNHpdVIALRAQ 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 509 LNKIEKEFETLLsalelkkkeceelkeeknqisfwkidsEKLINQIESEKEILLGKINHLETSLKTQQvspdsnERIRTL 588
Cdd:COG3206 300 IAALRAQLQQEA---------------------------QRILASLEAELEALQAREASLQAQLAQLE------ARLAEL 346
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 568911612 589 EMERenftVEIKNLQSmldskmvEIKTQKQAYLELQQKSESSDQKHQKEIEN 640
Cdd:COG3206 347 PELE----AELRRLER-------EVEVARELYESLLQRLEEARLAEALTVGN 387
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
2148-2704 |
6.09e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 6.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2148 QEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSamlmlQMQLKELREEVAALCNDQETLKAQEQSLDQpgeEVHHL 2227
Cdd:pfam10174 181 WERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHR-----RNQLQPDPAKTKALQTVIEMKDTKISSLER---NIRDL 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2228 KSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELilSEKNMIFQAEKSKAEiqTLKSEIQRMAQNLQD 2307
Cdd:pfam10174 253 EDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQEL--SKKESELLALQTKLE--TLTNQNSDCKQHIEV 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2308 LQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQE 2387
Cdd:pfam10174 329 LKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQE 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2388 VSKTKEQNLGS---QVQTLELEKAqllqdlgeaknkyiifqSSVNALTQEVEAgkqkLEKGEKEIRTLKEQLKSQEQLvc 2464
Cdd:pfam10174 409 QLRDKDKQLAGlkeRVKSLQTDSS-----------------NTDTALTTLEEA----LSEKERIIERLKEQREREDRE-- 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2465 KLAQVEGEQQlwqkqklELRNvtmaLEQKVQVLQSENNTLQSTYEALQNSHKSLESelgliklekvALVERVSTISGKEA 2544
Cdd:pfam10174 466 RLEELESLKK-------ENKD----LKEKVSALQPELTEKESSLIDLKEHASSLAS----------SGLKKDSKLKSLEI 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2545 ELQRELRDMLQKTTQLSEDYNKEKNrlteevevlreelQNTKAAHLKSVNQLEKELQR-------AQGKIKLMLKSCRQL 2617
Cdd:pfam10174 525 AVEQKKEECSKLENQLKKAHNAEEA-------------VRTNPEINDRIRLLEQEVARykeesgkAQAEVERLLGILREV 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2618 EGEKEMLQKELSQLE--AAQQQRAGSLVDSNVDEVMTENKALK-ETLEEKVKEADKYLDKYCSLLISH--EELEKAKEIL 2692
Cdd:pfam10174 592 ENEKNDKDKKIAELEslTLRQMKEQNKKVANIKHGQQEMKKKGaQLLEEARRREDNLADNSQQLQLEElmGALEKTRQEL 671
|
570
....*....|..
gi 568911612 2693 EIEVARLKSRQS 2704
Cdd:pfam10174 672 DATKARLSSTQQ 683
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1819-2378 |
6.51e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 42.35 E-value: 6.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1819 DNYKEKFLDMERELTRIKSEKANIE-----------HHILSVETNLEV--VQAEKLCLERDTeSKQKVIIDLKEELFTVI 1885
Cdd:TIGR01612 1253 DEIKEKSPEIENEMGIEMDIKAEMEtfnishdddkdHHIISKKHDENIsdIREKSLKIIEDF-SEESDINDIKKELQKNL 1331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1886 SERNRLREELDNVSKESKALDQMSK--KMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVG--------ELT 1955
Cdd:TIGR01612 1332 LDAQKHNSDINLYLNEIANIYNILKlnKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINleeckskiEST 1411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 1956 KDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESE----CEKQTISKALEVALKEKGEF 2031
Cdd:TIGR01612 1412 LDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQhilkIKKDNATNDHDFNINELKEH 1491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2032 AVQLSSAQEEVHQLRRGIEKLSVRIEADEKK------HLSAVA---KLKESQRESDSLKDTVETLERELERSEENQELAI 2102
Cdd:TIGR01612 1492 IDKSKGCKDEADKNAKAIEKNKELFEQYKKDvtellnKYSALAiknKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKI 1571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2103 LDSENLKAEVETLKAQKDEMTKSLrifeldlVTVRTERENLakqlQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDS 2182
Cdd:TIGR01612 1572 KEIKKEKFRIEDDAAKNDKSNKAA-------IDIQLSLENF----ENKFLKISDIKKKINDCLKETESIEKKISSFSIDS 1640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2183 KsamlmlQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQ-NILEQLKESkhhADL 2261
Cdd:TIGR01612 1641 Q------DTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEiGIIEKIKEI---AIA 1711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2262 LKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINS 2341
Cdd:TIGR01612 1712 NKEEIESIKELIEPTIENLISSFNTNDLEGIDPNEKLEEYNTEIGDIYEEFIELYNIIAGCLETVSKEPITYDEIKNTRI 1791
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 568911612 2342 SIEN-LLKDKEQEK--------VQMKEEAKItVEMLQTQLKELNET 2378
Cdd:TIGR01612 1792 NAQNeFLKIIEIEKksksylddIEAKEFDRI-INHFKKKLDHVNDK 1836
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
753-983 |
6.82e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 6.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 753 GRSPEHIAILQNRVTS--LESSLESQNQMNSDLQMRCEELLQikgEVEENLSKAEQIHQNFVAETNqcISKLQEDAavhq 830
Cdd:COG3206 144 SPDPELAAAVANALAEayLEQNLELRREEARKALEFLEEQLP---ELRKELEEAEAALEEFRQKNG--LVDLSEEA---- 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 831 NIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKE---LQLLSDTLSSEKKEMNSIISLSKKNIEELT 907
Cdd:COG3206 215 KLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspvIQQLRAQLAELEAELAELSARYTPNHPDVI 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568911612 908 QANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQYKQERLQLLQrceeTEAVLEDLRGNYKTAQEN 983
Cdd:COG3206 295 ALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPE----LEAELRRLEREVEVAREL 366
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2137-2361 |
6.97e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 6.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2137 RTEREN----LAKQLQEKQSRVSELDERCSSLRRLL------------EEKEQARVQMEEdSKSAMLMLQ---MQLKELR 2197
Cdd:PRK04863 846 RVELERaladHESQEQQQRSQLEQAKEGLSALNRLLprlnlladetlaDRVEEIREQLDE-AEEAKRFVQqhgNALAQLE 924
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2198 EEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKvhiDADEKKH----QNILEQLKESKHHADLLKDRVENLEQEL 2273
Cdd:PRK04863 925 PIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALT---EVVQRRAhfsyEDAAEMLAKNSDLNEKLRQRLEQAEQER 1001
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2274 -ILSEKNMIFQAEKSKAE--IQTLKSEIQRMAQNLQDLQLEL------------ISTRSENENLMKELKKEQERVSDLET 2338
Cdd:PRK04863 1002 tRAREQLRQAQAQLAQYNqvLASLKSSYDAKRQMLQELKQELqdlgvpadsgaeERARARRDELHARLSANRSRRNQLEK 1081
|
250 260 270
....*....|....*....|....*....|
gi 568911612 2339 INSSIE-------NLLKDKEQEKVQMKEEA 2361
Cdd:PRK04863 1082 QLTFCEaemdnltKKLRKLERDYHEMREQV 1111
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
2207-2515 |
7.42e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.76 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2207 QETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHH----ADLLKDRVENLEQELI----LSEK 2278
Cdd:pfam06160 92 EELLDDIEEDIKQILEELDELLESEEKNREEVEELKDKYRELRKTLLANRFSygpaIDELEKQLAEIEEEFSqfeeLTES 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2279 NMIFQA----EKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKE---------QERVSDLETINSSIEN 2345
Cdd:pfam06160 172 GDYLEArevlEKLEEETDALEELMEDIPPLYEELKTELPDQLEELKEGYREMEEEgyalehlnvDKEIQQLEEQLEENLA 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2346 LLKDKEQEKVQMKeeakitVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYII-- 2423
Cdd:pfam06160 252 LLENLELDEAEEA------LEEIEERIDQLYDLLEKEVDAKKYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLne 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2424 --------FQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcKLAQVEGEQQLWQKQKLELRNVTMALEQKVQ 2495
Cdd:pfam06160 326 nelervrgLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILE---QLEEIEEEQEEFKESLQSLRKDELEAREKLD 402
|
330 340
....*....|....*....|
gi 568911612 2496 VLQSEnntLQSTYEALQNSH 2515
Cdd:pfam06160 403 EFKLE---LREIKRLVEKSN 419
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2446-2705 |
8.74e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 8.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2446 EKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLI 2525
Cdd:PRK03918 175 KRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2526 KLEKVALVERVSTISGKEAELqRELRDMLQKTTQLsEDYNKEKNRLTEEVEVLREELQNTKAaHLKSVNQLEKELQRAQG 2605
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEI-EELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDELREIEK-RLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 2606 KIKLMLKSCRQLEGEKEMLQKELSQLEAAQQ--QRAGSLVDsNVDEVMTENKAL-KETLEEKVKEADKyldkycslliSH 2682
Cdd:PRK03918 332 ELEEKEERLEELKKKLKELEKRLEELEERHElyEEAKAKKE-ELERLKKRLTGLtPEKLEKELEELEK----------AK 400
|
250 260
....*....|....*....|...
gi 568911612 2683 EELEKAKEILEIEVARLKSRQSR 2705
Cdd:PRK03918 401 EEIEEEISKITARIGELKKEIKE 423
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
211-656 |
9.04e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 9.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 211 LKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERI------LNKTRDEVVRSTAQYDQAAAKCTTLEQK 284
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKvkelkeLKEKAEEYIKLSEFYEEYLDELREIEKR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 285 LKTLTEELSC------HRQNAESAKRSLEQRIKEKEKELQE--ELSRQHQSFQALDSEYTQMKTRLT--------QELQQ 348
Cdd:PRK03918 316 LSRLEEEINGieerikELEEKEERLEELKKKLKELEKRLEEleERHELYEEAKAKKEELERLKKRLTgltpekleKELEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 349 VKHLHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENEL-RRSSEEMKKENSLIRSQSEQRTREVCHLE 427
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELtEEHRKELLEEYTAELKRIEKELKEIEEKE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 428 EELGKVKVSLsksqnfaeEMKAKNTSQEIMLRDLQEKLNQQENSLTleklKLALADLERqrncsqdllKKREHhiDQLNN 507
Cdd:PRK03918 476 RKLRKELREL--------EKVLKKESELIKLKELAEQLKELEEKLK----KYNLEELEK---------KAEEY--EKLKE 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911612 508 KLNKIEKEFETLLSALELKKKECEELKEEKNQISFWKIDSEKLINQIESEK----EILLGKINHLETSLKTQQVSPDSNE 583
Cdd:PRK03918 533 KLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGfesvEELEERLKELEPFYNEYLELKDAEK 612
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568911612 584 RIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKseSSDQKHQKEIENMCLKANKLTGQVESLE 656
Cdd:PRK03918 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK--YSEEEYEELREEYLELSRELAGLRAELE 683
|
|
| |
