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Conserved domains on  [gi|568905678|ref|XP_006495707|]
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collagen alpha-1(XIX) chain isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 76-255 5.41e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


:

Pssm-ID: 214560  Cd Length: 184  Bit Score: 169.08  E-value: 5.41e-48
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678     76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210    4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678    153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210   81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157

                           170       180
                    ....*....|....*....|....*
gi 568905678    231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210  158 IEVRGAQAADRKPFQGDLQQLKIVC 182
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 448-668 2.92e-34

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 137.34  E-value: 2.92e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  448 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 527
Cdd:NF038329  107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  528 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 596
Cdd:NF038329  187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678  597 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 668
Cdd:NF038329  267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 707-976 5.33e-19

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 91.12  E-value: 5.33e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  707 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 786
Cdd:NF038329  109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  787 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 866
Cdd:NF038329  185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  867 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 946
Cdd:NF038329  241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308

                         250       260       270
                  ....*....|....*....|....*....|
gi 568905678  947 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 976
Cdd:NF038329  309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 872-1100 1.30e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 89.96  E-value: 1.30e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  872 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 951
Cdd:NF038329  115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  952 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1031
Cdd:NF038329  177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678 1032 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1100
Cdd:NF038329  240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
 
Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 76-255 5.41e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 169.08  E-value: 5.41e-48
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678     76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210    4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678    153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210   81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157

                           170       180
                    ....*....|....*....|....*
gi 568905678    231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210  158 IEVRGAQAADRKPFQGDLQQLKIVC 182
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 448-668 2.92e-34

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 137.34  E-value: 2.92e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  448 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 527
Cdd:NF038329  107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  528 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 596
Cdd:NF038329  187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678  597 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 668
Cdd:NF038329  267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 348-661 1.03e-28

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 120.78  E-value: 1.03e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  348 GQKGEQGLEGIKGEIGEKGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGIQGPQGPPGKEgqrgrrgktgppgnpgp 427
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKD----------------- 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  428 pgppgppglqglqqpfggyfnkgtGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEpltKGEKGDRGEPGLLGPQGi 507
Cdd:NF038329  180 ------------------------GEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---DGEAGPAGEDGPAGPAG- 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  508 kgepgdpgppgllgspglKGQQGPAGSMGPRGPPGDVGLPGEhgiPGKQGVKGEKGDPggrlGPPGLPGLKGDAGPPGis 587
Cdd:NF038329  232 ------------------DGQQGPDGDPGPTGEDGPQGPDGP---AGKDGPRGDRGEA----GPDGPDGKDGERGPVG-- 284

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  588 LPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPG------IQGPRGLPGLPGTPGMP 660
Cdd:NF038329  285 PAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPApktpevPQKPDTAPHTPKTPQIP 364


                  .
gi 568905678  661 G 661
Cdd:NF038329  365 G 365
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 316-606 3.40e-23

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 104.22  E-value: 3.40e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  316 EAGLPGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGLKGDSGPQGPpgpkgdKGDMGPPGPpalt 395
Cdd:NF038329  136 PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP------RGETGPAGE---- 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  396 gsigiQGPQGPPGKEGQRGRRGKtgppgnpgppgppgppglqglqqpfggyfnkgtgehgaSGPKGEKGDtglpgfpgsv 475
Cdd:NF038329  206 -----QGPAGPAGPDGEAGPAGE--------------------------------------DGPAGPAGD---------- 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  476 GPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEpgdpgppgllgsPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGK 555
Cdd:NF038329  233 GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE------------AGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGK 300

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 568905678  556 QGVKGEKGDpggrlgpPGLPGLKGDAGPPGI-SLPGKPGLDGNPGSPGPRGP 606
Cdd:NF038329  301 DGKDGQNGK-------DGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPAPKTP 345
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 707-976 5.33e-19

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 91.12  E-value: 5.33e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  707 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 786
Cdd:NF038329  109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  787 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 866
Cdd:NF038329  185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  867 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 946
Cdd:NF038329  241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308

                         250       260       270
                  ....*....|....*....|....*....|
gi 568905678  947 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 976
Cdd:NF038329  309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 872-1100 1.30e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 89.96  E-value: 1.30e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  872 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 951
Cdd:NF038329  115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  952 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1031
Cdd:NF038329  177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678 1032 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1100
Cdd:NF038329  240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 524-803 2.08e-17

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 86.50  E-value: 2.08e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  524 GLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGisLPGKPGLDGNPGSPGP 603
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERG----EKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGE 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  604 RGPKGERGLPGLHGSPGDTGPPGvgipgrtgsqgPAGEPGIQGPRGLPGLPGtpgmpgndgapgkdgkpglpgppgdpia 683
Cdd:NF038329  191 KGPQGPRGETGPAGEQGPAGPAG-----------PDGEAGPAGEDGPAGPAG---------------------------- 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  684 lpllgdigallknfcgncqanvpglksiKGDDGSTGEPGKYDPAARKGDvgprgpPGFPGREGPKGSKGERGYPGIHGEK 763
Cdd:NF038329  232 ----------------------------DGQQGPDGDPGPTGEDGPQGP------DGPAGKDGPRGDRGEAGPDGPDGKD 277

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 568905678  764 GDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKG 803
Cdd:NF038329  278 GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 749-991 7.02e-17

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 84.57  E-value: 7.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  749 GSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngms 828
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDG---------------- 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  829 slykiqggvnvpgypgppgppgpkgdpgpvgEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGE 908
Cdd:NF038329  181 -------------------------------EAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  909 RGPiGDTGFPGPEGPSGKPGINGKDGLPGAQGimgKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAG 988
Cdd:NF038329  230 AGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG---PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDG 305


                  ...
gi 568905678  989 SKG 991
Cdd:NF038329  306 QNG 308
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 860-1103 3.64e-13

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 73.02  E-value: 3.64e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  860 EPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERGPIG---------DTGFPGPEGPSGKPGIN 930
Cdd:NF038329  121 EPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGpagkdgeagAKGPAGEKGPQGPRGET 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  931 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDrGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGT 1010
Cdd:NF038329  201 GPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 1011 paDAVSFEEIKHYINQEVlrifeermavflsqlKLPAAmlsaqaHGRPGPPGKDGLPgppgdpgpqgyrGQKGERGEPG- 1089
Cdd:NF038329  280 --RGPVGPAGKDGQNGKD---------------GLPGK------DGKDGQNGKDGLP------------GKDGKDGQPGk 324

                         250
                  ....*....|....*..
gi 568905678 1090 ---IGLPGSPGLPGSSA 1103
Cdd:NF038329  325 dglPGKDGKDGQPGKPA 341
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
339-659 8.56e-08

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 56.19  E-value: 8.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  339 GLDGTPGLPGQKGEQGLEGIKGEIGEKGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGIQGPQGPPGKEGQRGRRGK 418
Cdd:COG5164     7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  419 TGPpgnpgppgppgppglqglqqpfggyfNKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLT--KGEKGDR 496
Cdd:COG5164    87 QGG--------------------------TRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGgsTTPPGDG 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  497 GE-PGLLGPQGIKGEPGDPGPPGLLGSPGLKGQQGPAGSMGPRGPP--GDVGLPGEHGIPGKQGVKG--EKGDPGGRLGP 571
Cdd:COG5164   141 GStPPGPGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPnkGETGTDIPTGGTPRQGPDGpvKKDDKNGKGNP 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  572 PGLPGLKGDAGPPGISLpgkpgldgnpGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQGPRGLP 651
Cdd:COG5164   221 PDDRGGKTGPKDQRPKT----------NPIERRGPERPEAAALPAELTALEAENRAANPEPATKTIPETTTVKDLATVLG 290


                  ....*...
gi 568905678  652 GLPGTPGM 659
Cdd:COG5164   291 KKGSDLVT 298
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 931-987 3.58e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 42.48  E-value: 3.58e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 568905678   931 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPA 987
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 530-586 5.16e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 42.10  E-value: 5.16e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 568905678   530 GPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGI 586
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPG----PPGPPGPPGPPGAPGA 53
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
757-993 8.33e-04

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 43.48  E-value: 8.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  757 PGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGPPGPPgvplnEGNGMSSLYKIQGG 836
Cdd:COG5164     6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPA-----GNQGATGPAQNQGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  837 VNVPGYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERG---PIG 913
Cdd:COG5164    81 TTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGsttPPG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  914 DTGFPGPEGPSGKPGINGKDGL--PGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKP----GLTGMKGAIGPVGPA 987
Cdd:COG5164   161 DGGSTTPPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPI 240


                  ....*.
gi 568905678  988 GSKGST 993
Cdd:COG5164   241 ERRGPE 246
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 566-661 8.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 40.05  E-value: 8.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  566 GGRLGPPGLPGLKGDAGPPGISLPgkpgldgNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQ 645
Cdd:PRK14959  375 GGGASAPSGSAAEGPASGGAATIP-------TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSG 447

                          90
                  ....*....|....*..
gi 568905678  646 G-PRGLPGLPGTPGMPG 661
Cdd:PRK14959  448 IpPRPAPRMPEASPVPG 464
 
Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 76-255 5.41e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 169.08  E-value: 5.41e-48
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678     76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210    4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678    153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210   81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157

                           170       180
                    ....*....|....*....|....*
gi 568905678    231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210  158 IEVRGAQAADRKPFQGDLQQLKIVC 182
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 448-668 2.92e-34

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 137.34  E-value: 2.92e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  448 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 527
Cdd:NF038329  107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  528 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 596
Cdd:NF038329  187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678  597 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 668
Cdd:NF038329  267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 348-661 1.03e-28

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 120.78  E-value: 1.03e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  348 GQKGEQGLEGIKGEIGEKGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGIQGPQGPPGKEgqrgrrgktgppgnpgp 427
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKD----------------- 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  428 pgppgppglqglqqpfggyfnkgtGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEpltKGEKGDRGEPGLLGPQGi 507
Cdd:NF038329  180 ------------------------GEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---DGEAGPAGEDGPAGPAG- 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  508 kgepgdpgppgllgspglKGQQGPAGSMGPRGPPGDVGLPGEhgiPGKQGVKGEKGDPggrlGPPGLPGLKGDAGPPGis 587
Cdd:NF038329  232 ------------------DGQQGPDGDPGPTGEDGPQGPDGP---AGKDGPRGDRGEA----GPDGPDGKDGERGPVG-- 284

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  588 LPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPG------IQGPRGLPGLPGTPGMP 660
Cdd:NF038329  285 PAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPApktpevPQKPDTAPHTPKTPQIP 364


                  .
gi 568905678  661 G 661
Cdd:NF038329  365 G 365
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 316-606 3.40e-23

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 104.22  E-value: 3.40e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  316 EAGLPGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGLKGDSGPQGPpgpkgdKGDMGPPGPpalt 395
Cdd:NF038329  136 PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP------RGETGPAGE---- 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  396 gsigiQGPQGPPGKEGQRGRRGKtgppgnpgppgppgppglqglqqpfggyfnkgtgehgaSGPKGEKGDtglpgfpgsv 475
Cdd:NF038329  206 -----QGPAGPAGPDGEAGPAGE--------------------------------------DGPAGPAGD---------- 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  476 GPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEpgdpgppgllgsPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGK 555
Cdd:NF038329  233 GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE------------AGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGK 300

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 568905678  556 QGVKGEKGDpggrlgpPGLPGLKGDAGPPGI-SLPGKPGLDGNPGSPGPRGP 606
Cdd:NF038329  301 DGKDGQNGK-------DGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPAPKTP 345
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 707-976 5.33e-19

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 91.12  E-value: 5.33e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  707 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 786
Cdd:NF038329  109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  787 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 866
Cdd:NF038329  185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  867 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 946
Cdd:NF038329  241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308

                         250       260       270
                  ....*....|....*....|....*....|
gi 568905678  947 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 976
Cdd:NF038329  309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 872-1100 1.30e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 89.96  E-value: 1.30e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  872 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 951
Cdd:NF038329  115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  952 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1031
Cdd:NF038329  177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678 1032 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1100
Cdd:NF038329  240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 524-803 2.08e-17

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 86.50  E-value: 2.08e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  524 GLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGisLPGKPGLDGNPGSPGP 603
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERG----EKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGE 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  604 RGPKGERGLPGLHGSPGDTGPPGvgipgrtgsqgPAGEPGIQGPRGLPGLPGtpgmpgndgapgkdgkpglpgppgdpia 683
Cdd:NF038329  191 KGPQGPRGETGPAGEQGPAGPAG-----------PDGEAGPAGEDGPAGPAG---------------------------- 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  684 lpllgdigallknfcgncqanvpglksiKGDDGSTGEPGKYDPAARKGDvgprgpPGFPGREGPKGSKGERGYPGIHGEK 763
Cdd:NF038329  232 ----------------------------DGQQGPDGDPGPTGEDGPQGP------DGPAGKDGPRGDRGEAGPDGPDGKD 277

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 568905678  764 GDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKG 803
Cdd:NF038329  278 GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 749-991 7.02e-17

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 84.57  E-value: 7.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  749 GSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngms 828
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDG---------------- 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  829 slykiqggvnvpgypgppgppgpkgdpgpvgEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGE 908
Cdd:NF038329  181 -------------------------------EAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  909 RGPiGDTGFPGPEGPSGKPGINGKDGLPGAQGimgKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAG 988
Cdd:NF038329  230 AGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG---PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDG 305


                  ...
gi 568905678  989 SKG 991
Cdd:NF038329  306 QNG 308
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 860-1103 3.64e-13

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 73.02  E-value: 3.64e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  860 EPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERGPIG---------DTGFPGPEGPSGKPGIN 930
Cdd:NF038329  121 EPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGpagkdgeagAKGPAGEKGPQGPRGET 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  931 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDrGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGT 1010
Cdd:NF038329  201 GPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 1011 paDAVSFEEIKHYINQEVlrifeermavflsqlKLPAAmlsaqaHGRPGPPGKDGLPgppgdpgpqgyrGQKGERGEPG- 1089
Cdd:NF038329  280 --RGPVGPAGKDGQNGKD---------------GLPGK------DGKDGQNGKDGLP------------GKDGKDGQPGk 324

                         250
                  ....*....|....*..
gi 568905678 1090 ---IGLPGSPGLPGSSA 1103
Cdd:NF038329  325 dglPGKDGKDGQPGKPA 341
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
339-659 8.56e-08

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 56.19  E-value: 8.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  339 GLDGTPGLPGQKGEQGLEGIKGEIGEKGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGIQGPQGPPGKEGQRGRRGK 418
Cdd:COG5164     7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  419 TGPpgnpgppgppgppglqglqqpfggyfNKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLT--KGEKGDR 496
Cdd:COG5164    87 QGG--------------------------TRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGgsTTPPGDG 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  497 GE-PGLLGPQGIKGEPGDPGPPGLLGSPGLKGQQGPAGSMGPRGPP--GDVGLPGEHGIPGKQGVKG--EKGDPGGRLGP 571
Cdd:COG5164   141 GStPPGPGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPnkGETGTDIPTGGTPRQGPDGpvKKDDKNGKGNP 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  572 PGLPGLKGDAGPPGISLpgkpgldgnpGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQGPRGLP 651
Cdd:COG5164   221 PDDRGGKTGPKDQRPKT----------NPIERRGPERPEAAALPAELTALEAENRAANPEPATKTIPETTTVKDLATVLG 290


                  ....*...
gi 568905678  652 GLPGTPGM 659
Cdd:COG5164   291 KKGSDLVT 298
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
320-651 8.25e-07

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 53.11  E-value: 8.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  320 PGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIG 399
Cdd:COG5164     6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQ 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  400 IQGPQGPPGKEGQRGRRGKTGPPGNPGPPGPPGPPGLQGLQQPFGGyfnkgtgehGASGPKGEKGDTglPGFPGSVGPKG 479
Cdd:COG5164    86 NQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSG---------GSTTPPGDGGST--PPGPGSTGPGG 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  480 HKGEPGEPLTKGEKGDRGEPGLLGPQGIKGepgdpgpPGLLGSPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVK 559
Cdd:COG5164   155 STTPPGDGGSTTPPGPGGSTTPPDDGGSTT-------PPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPDDRGGK 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  560 GEKGDPGGRLGPPGLPGLKGDAGPPGISLP---GKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQ 636
Cdd:COG5164   228 TGPKDQRPKTNPIERRGPERPEAAALPAELtalEAENRAANPEPATKTIPETTTVKDLATVLGKKGSDLVTNLMKKGKGT 307

                         330
                  ....*....|....*
gi 568905678  637 GPAGEPGIQGPRGLP 651
Cdd:COG5164   308 NINAALDFETAATIA 322
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 931-987 3.58e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 42.48  E-value: 3.58e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 568905678   931 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPA 987
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 922-976 4.11e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 42.10  E-value: 4.11e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 568905678   922 GPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTG 976
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 530-586 5.16e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 42.10  E-value: 5.16e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 568905678   530 GPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGI 586
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPG----PPGPPGPPGPPGAPGA 53
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 576-626 1.20e-04

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 40.94  E-value: 1.20e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 568905678   576 GLKGDAGPPGIslPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPG 626
Cdd:pfam01391    1 GPPGPPGPPGP--PGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPG 49
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 905-958 1.80e-04

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 40.55  E-value: 1.80e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 568905678   905 EQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQG 958
Cdd:pfam01391    2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
757-993 8.33e-04

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 43.48  E-value: 8.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  757 PGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGPPGPPgvplnEGNGMSSLYKIQGG 836
Cdd:COG5164     6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPA-----GNQGATGPAQNQGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  837 VNVPGYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERG---PIG 913
Cdd:COG5164    81 TTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGsttPPG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  914 DTGFPGPEGPSGKPGINGKDGL--PGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKP----GLTGMKGAIGPVGPA 987
Cdd:COG5164   161 DGGSTTPPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPI 240


                  ....*.
gi 568905678  988 GSKGST 993
Cdd:COG5164   241 ERRGPE 246
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 949-992 1.10e-03

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 38.24  E-value: 1.10e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 568905678   949 GPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGS 992
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGP 44
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 461-511 8.19e-03

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 35.55  E-value: 8.19e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 568905678   461 GEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEP 511
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAP 51
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 566-661 8.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 40.05  E-value: 8.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678  566 GGRLGPPGLPGLKGDAGPPGISLPgkpgldgNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQ 645
Cdd:PRK14959  375 GGGASAPSGSAAEGPASGGAATIP-------TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSG 447

                          90
                  ....*....|....*..
gi 568905678  646 G-PRGLPGLPGTPGMPG 661
Cdd:PRK14959  448 IpPRPAPRMPEASPVPG 464
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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