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Conserved domains on  [gi|568905676|ref|XP_006495706|]
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collagen alpha-1(XIX) chain isoform X2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 76-255 5.77e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


:

Pssm-ID: 214560  Cd Length: 184  Bit Score: 169.08  E-value: 5.77e-48
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676     76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210    4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676    153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210   81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157

                           170       180
                    ....*....|....*....|....*
gi 568905676    231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210  158 IEVRGAQAADRKPFQGDLQQLKIVC 182
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 466-686 4.89e-34

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 136.57  E-value: 4.89e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  466 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 545
Cdd:NF038329  107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  546 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 614
Cdd:NF038329  187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676  615 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 686
Cdd:NF038329  267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 725-994 7.06e-19

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 90.73  E-value: 7.06e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  725 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 804
Cdd:NF038329  109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  805 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 884
Cdd:NF038329  185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  885 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 964
Cdd:NF038329  241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308

                         250       260       270
                  ....*....|....*....|....*....|
gi 568905676  965 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 994
Cdd:NF038329  309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 890-1118 2.02e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 89.58  E-value: 2.02e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  890 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 969
Cdd:NF038329  115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  970 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1049
Cdd:NF038329  177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676 1050 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1118
Cdd:NF038329  240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
 
Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 76-255 5.77e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 169.08  E-value: 5.77e-48
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676     76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210    4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676    153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210   81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157

                           170       180
                    ....*....|....*....|....*
gi 568905676    231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210  158 IEVRGAQAADRKPFQGDLQQLKIVC 182
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 466-686 4.89e-34

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 136.57  E-value: 4.89e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  466 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 545
Cdd:NF038329  107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  546 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 614
Cdd:NF038329  187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676  615 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 686
Cdd:NF038329  267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 353-679 3.63e-28

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 119.24  E-value: 3.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  353 QGLEGIKGEiGEKGEPGAKGDSGLDGLNGQDGLKGDsgpqgppgpkgdKGDMGPPGPPALTGSIGIQGPQGPPGKEGQRG 432
Cdd:NF038329  108 EGLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGE------------TGPAGPAGPPGPQGERGEKGPAGPQGEAGPQG 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  433 RRGKtgppgnpgppgpPgppglqglqqpfggyfnkgtGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEpltKGEKG 512
Cdd:NF038329  175 PAGK------------D--------------------GEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---DGEAG 219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  513 DRGEPGLLGPQGikgepgdpgppgllgspglKGQQGPAGSMGPRGPPGDVGLPGEhgiPGKQGVKGEKGDPggrlGPPGL 592
Cdd:NF038329  220 PAGEDGPAGPAG-------------------DGQQGPDGDPGPTGEDGPQGPDGP---AGKDGPRGDRGEA----GPDGP 273

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  593 PGLKGDAGPPGisLPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPG------IQGP 665
Cdd:NF038329  274 DGKDGERGPVG--PAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPApktpevPQKP 351

                         330
                  ....*....|....
gi 568905676  666 RGLPGLPGTPGMPG 679
Cdd:NF038329  352 DTAPHTPKTPQIPG 365
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 316-624 8.52e-26

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 111.92  E-value: 8.52e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  316 EAGLPGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPp 395
Cdd:NF038329  118 EKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP- 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  396 gpkgdKGDMGPPGPpaltgsigiQGPQGPPGKEGQRGRRGKtgppgnpgppgppgppglqglqqpfggyfnkgtgehgaS 475
Cdd:NF038329  197 -----RGETGPAGE---------QGPAGPAGPDGEAGPAGE--------------------------------------D 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  476 GPKGEKGDtglpgfpgsvGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEpgdpgppgllgsPGLKGQQGPAGSMGP 555
Cdd:NF038329  225 GPAGPAGD----------GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE------------AGPDGPDGKDGERGP 282

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  556 RGPPGDVGLPGEHGIPGKQGVKGEKGDpggrlgpPGLPGLKGDAGPPGI-SLPGKPGLDGNPGSPGPRGP 624
Cdd:NF038329  283 VGPAGKDGQNGKDGLPGKDGKDGQNGK-------DGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPAPKTP 345
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 725-994 7.06e-19

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 90.73  E-value: 7.06e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  725 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 804
Cdd:NF038329  109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  805 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 884
Cdd:NF038329  185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  885 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 964
Cdd:NF038329  241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308

                         250       260       270
                  ....*....|....*....|....*....|
gi 568905676  965 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 994
Cdd:NF038329  309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 890-1118 2.02e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 89.58  E-value: 2.02e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  890 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 969
Cdd:NF038329  115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  970 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1049
Cdd:NF038329  177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676 1050 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1118
Cdd:NF038329  240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 542-821 3.54e-17

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 85.73  E-value: 3.54e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  542 GLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGisLPGKPGLDGNPGSPGP 621
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERG----EKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGE 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  622 RGPKGERGLPGLHGSPGDTGPPGvgipgrtgsqgPAGEPGIQGPRGLPGLPGtpgmpgndgapgkdgkpglpgppgdpia 701
Cdd:NF038329  191 KGPQGPRGETGPAGEQGPAGPAG-----------PDGEAGPAGEDGPAGPAG---------------------------- 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  702 lpllgdigallknfcgncqanvpglksiKGDDGSTGEPGKYDPAARKGDvgprgpPGFPGREGPKGSKGERGYPGIHGEK 781
Cdd:NF038329  232 ----------------------------DGQQGPDGDPGPTGEDGPQGP------DGPAGKDGPRGDRGEAGPDGPDGKD 277

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 568905676  782 GDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKG 821
Cdd:NF038329  278 GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 767-1009 9.78e-17

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 84.19  E-value: 9.78e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  767 GSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngms 846
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDG---------------- 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  847 slykiqggvnvpgypgppgppgpkgdpgpvgEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGE 926
Cdd:NF038329  181 -------------------------------EAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  927 RGPiGDTGFPGPEGPSGKPGINGKDGLPGAQGimgKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAG 1006
Cdd:NF038329  230 AGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG---PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDG 305


                  ...
gi 568905676 1007 SKG 1009
Cdd:NF038329  306 QNG 308
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
339-669 8.35e-08

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 56.19  E-value: 8.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  339 GLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGI 418
Cdd:COG5164     7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  419 QGPQGPPGKEGQRGRRGKTGPPGNPGPPGPPGPPGLQGLQQPFGGyfnkgtgehGASGPKGEKGDTglPGFPGSVGPKGH 498
Cdd:COG5164    87 QGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSG---------GSTTPPGDGGST--PPGPGSTGPGGS 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  499 KGEPGEPLTKGEKGDRGEPGLLGPQGIKGepgdpgpPGLLGSPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKG 578
Cdd:COG5164   156 TTPPGDGGSTTPPGPGGSTTPPDDGGSTT-------PPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPDDRGGKT 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  579 EKGDPGGRLGPPGLPGLKGDAGPPGISLP---GKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQG 655
Cdd:COG5164   229 GPKDQRPKTNPIERRGPERPEAAALPAELtalEAENRAANPEPATKTIPETTTVKDLATVLGKKGSDLVTNLMKKGKGTN 308

                         330
                  ....*....|....
gi 568905676  656 PAGEPGIQGPRGLP 669
Cdd:COG5164   309 INAALDFETAATIA 322
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 949-1005 4.43e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 42.10  E-value: 4.43e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 568905676   949 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPA 1005
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 548-604 6.37e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 41.71  E-value: 6.37e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 568905676   548 GPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGI 604
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPG----PPGPPGPPGPPGAPGA 53
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
775-1011 9.72e-04

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 43.09  E-value: 9.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  775 PGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGPPGPPgvplnEGNGMSSLYKIQGG 854
Cdd:COG5164     6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPA-----GNQGATGPAQNQGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  855 VNVPGYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERG---PIG 931
Cdd:COG5164    81 TTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGsttPPG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  932 DTGFPGPEGPSGKPGINGKDGL--PGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKP----GLTGMKGAIGPVGPA 1005
Cdd:COG5164   161 DGGSTTPPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPI 240


                  ....*.
gi 568905676 1006 GSKGST 1011
Cdd:COG5164   241 ERRGPE 246
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 584-679 8.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 40.43  E-value: 8.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  584 GGRLGPPGLPGLKGDAGPPGISLPgkpgldgNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQ 663
Cdd:PRK14959  375 GGGASAPSGSAAEGPASGGAATIP-------TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSG 447

                          90
                  ....*....|....*..
gi 568905676  664 G-PRGLPGLPGTPGMPG 679
Cdd:PRK14959  448 IpPRPAPRMPEASPVPG 464
 
Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 76-255 5.77e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 169.08  E-value: 5.77e-48
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676     76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210    4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676    153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210   81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157

                           170       180
                    ....*....|....*....|....*
gi 568905676    231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210  158 IEVRGAQAADRKPFQGDLQQLKIVC 182
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 466-686 4.89e-34

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 136.57  E-value: 4.89e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  466 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 545
Cdd:NF038329  107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  546 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 614
Cdd:NF038329  187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676  615 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 686
Cdd:NF038329  267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 353-679 3.63e-28

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 119.24  E-value: 3.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  353 QGLEGIKGEiGEKGEPGAKGDSGLDGLNGQDGLKGDsgpqgppgpkgdKGDMGPPGPPALTGSIGIQGPQGPPGKEGQRG 432
Cdd:NF038329  108 EGLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGE------------TGPAGPAGPPGPQGERGEKGPAGPQGEAGPQG 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  433 RRGKtgppgnpgppgpPgppglqglqqpfggyfnkgtGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEpltKGEKG 512
Cdd:NF038329  175 PAGK------------D--------------------GEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---DGEAG 219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  513 DRGEPGLLGPQGikgepgdpgppgllgspglKGQQGPAGSMGPRGPPGDVGLPGEhgiPGKQGVKGEKGDPggrlGPPGL 592
Cdd:NF038329  220 PAGEDGPAGPAG-------------------DGQQGPDGDPGPTGEDGPQGPDGP---AGKDGPRGDRGEA----GPDGP 273

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  593 PGLKGDAGPPGisLPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPG------IQGP 665
Cdd:NF038329  274 DGKDGERGPVG--PAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPApktpevPQKP 351

                         330
                  ....*....|....
gi 568905676  666 RGLPGLPGTPGMPG 679
Cdd:NF038329  352 DTAPHTPKTPQIPG 365
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 316-624 8.52e-26

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 111.92  E-value: 8.52e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  316 EAGLPGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPp 395
Cdd:NF038329  118 EKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP- 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  396 gpkgdKGDMGPPGPpaltgsigiQGPQGPPGKEGQRGRRGKtgppgnpgppgppgppglqglqqpfggyfnkgtgehgaS 475
Cdd:NF038329  197 -----RGETGPAGE---------QGPAGPAGPDGEAGPAGE--------------------------------------D 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  476 GPKGEKGDtglpgfpgsvGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEpgdpgppgllgsPGLKGQQGPAGSMGP 555
Cdd:NF038329  225 GPAGPAGD----------GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE------------AGPDGPDGKDGERGP 282

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  556 RGPPGDVGLPGEHGIPGKQGVKGEKGDpggrlgpPGLPGLKGDAGPPGI-SLPGKPGLDGNPGSPGPRGP 624
Cdd:NF038329  283 VGPAGKDGQNGKDGLPGKDGKDGQNGK-------DGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPAPKTP 345
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 725-994 7.06e-19

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 90.73  E-value: 7.06e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  725 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 804
Cdd:NF038329  109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  805 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 884
Cdd:NF038329  185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  885 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 964
Cdd:NF038329  241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308

                         250       260       270
                  ....*....|....*....|....*....|
gi 568905676  965 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 994
Cdd:NF038329  309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 890-1118 2.02e-18

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 89.58  E-value: 2.02e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  890 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 969
Cdd:NF038329  115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  970 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1049
Cdd:NF038329  177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676 1050 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1118
Cdd:NF038329  240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 542-821 3.54e-17

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 85.73  E-value: 3.54e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  542 GLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGisLPGKPGLDGNPGSPGP 621
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERG----EKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGE 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  622 RGPKGERGLPGLHGSPGDTGPPGvgipgrtgsqgPAGEPGIQGPRGLPGLPGtpgmpgndgapgkdgkpglpgppgdpia 701
Cdd:NF038329  191 KGPQGPRGETGPAGEQGPAGPAG-----------PDGEAGPAGEDGPAGPAG---------------------------- 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  702 lpllgdigallknfcgncqanvpglksiKGDDGSTGEPGKYDPAARKGDvgprgpPGFPGREGPKGSKGERGYPGIHGEK 781
Cdd:NF038329  232 ----------------------------DGQQGPDGDPGPTGEDGPQGP------DGPAGKDGPRGDRGEAGPDGPDGKD 277

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 568905676  782 GDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKG 821
Cdd:NF038329  278 GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 767-1009 9.78e-17

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 84.19  E-value: 9.78e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  767 GSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngms 846
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDG---------------- 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  847 slykiqggvnvpgypgppgppgpkgdpgpvgEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGE 926
Cdd:NF038329  181 -------------------------------EAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  927 RGPiGDTGFPGPEGPSGKPGINGKDGLPGAQGimgKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAG 1006
Cdd:NF038329  230 AGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG---PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDG 305


                  ...
gi 568905676 1007 SKG 1009
Cdd:NF038329  306 QNG 308
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
339-669 8.35e-08

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 56.19  E-value: 8.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  339 GLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGI 418
Cdd:COG5164     7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  419 QGPQGPPGKEGQRGRRGKTGPPGNPGPPGPPGPPGLQGLQQPFGGyfnkgtgehGASGPKGEKGDTglPGFPGSVGPKGH 498
Cdd:COG5164    87 QGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSG---------GSTTPPGDGGST--PPGPGSTGPGGS 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  499 KGEPGEPLTKGEKGDRGEPGLLGPQGIKGepgdpgpPGLLGSPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKG 578
Cdd:COG5164   156 TTPPGDGGSTTPPGPGGSTTPPDDGGSTT-------PPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPDDRGGKT 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  579 EKGDPGGRLGPPGLPGLKGDAGPPGISLP---GKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQG 655
Cdd:COG5164   229 GPKDQRPKTNPIERRGPERPEAAALPAELtalEAENRAANPEPATKTIPETTTVKDLATVLGKKGSDLVTNLMKKGKGTN 308

                         330
                  ....*....|....
gi 568905676  656 PAGEPGIQGPRGLP 669
Cdd:COG5164   309 INAALDFETAATIA 322
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 949-1005 4.43e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 42.10  E-value: 4.43e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 568905676   949 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPA 1005
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 940-994 5.08e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 42.10  E-value: 5.08e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 568905676   940 GPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTG 994
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 548-604 6.37e-05

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 41.71  E-value: 6.37e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 568905676   548 GPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGI 604
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPG----PPGPPGPPGPPGAPGA 53
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 594-644 1.50e-04

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 40.55  E-value: 1.50e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 568905676   594 GLKGDAGPPGIslPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPG 644
Cdd:pfam01391    1 GPPGPPGPPGP--PGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPG 49
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 923-976 2.13e-04

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 40.17  E-value: 2.13e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 568905676   923 EQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQG 976
Cdd:pfam01391    2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
SPT5 COG5164
Transcription elongation factor SPT5 [Transcription];
775-1011 9.72e-04

Transcription elongation factor SPT5 [Transcription];


Pssm-ID: 444063 [Multi-domain]  Cd Length: 495  Bit Score: 43.09  E-value: 9.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  775 PGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGPPGPPgvplnEGNGMSSLYKIQGG 854
Cdd:COG5164     6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPA-----GNQGATGPAQNQGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  855 VNVPGYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERG---PIG 931
Cdd:COG5164    81 TTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGsttPPG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  932 DTGFPGPEGPSGKPGINGKDGL--PGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKP----GLTGMKGAIGPVGPA 1005
Cdd:COG5164   161 DGGSTTPPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPI 240


                  ....*.
gi 568905676 1006 GSKGST 1011
Cdd:COG5164   241 ERRGPE 246
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 967-1010 1.34e-03

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 37.86  E-value: 1.34e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 568905676   967 GPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGS 1010
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGP 44
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 584-679 8.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 40.43  E-value: 8.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676  584 GGRLGPPGLPGLKGDAGPPGISLPgkpgldgNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQ 663
Cdd:PRK14959  375 GGGASAPSGSAAEGPASGGAATIP-------TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSG 447

                          90
                  ....*....|....*..
gi 568905676  664 G-PRGLPGLPGTPGMPG 679
Cdd:PRK14959  448 IpPRPAPRMPEASPVPG 464
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 479-529 9.83e-03

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 35.55  E-value: 9.83e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 568905676   479 GEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEP 529
Cdd:pfam01391    1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAP 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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