NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|530401278|ref|XP_005253932|]
View 

protein FAM216A isoform X2 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FAM216B super family cl20976
FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, ...
 1-86 2.08e-38

FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins are found in eukaryotes. Proteins in this family are approximately 150 amino acids in length. In humans, the gene encoding this protein is located in the position, C13orf30.


The actual alignment was detected with superfamily member pfam15107:

Pssm-ID: 434464  Cd Length: 111  Bit Score: 127.24  E-value: 2.08e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401278    1 MMEASFFKhpDLTTGQKRYLCSIAKIYNANYLKMLMKRQYMHVLQHsSQKPGVLTHHRSRLSS---RYSQKQHYPCTTWR 77
Cdd:pfam15107  26 ASDTSLLK--DLTQGQQRYLYSIMKIYNSRPQWEALKRRYIHSLQH-QQLLGYITQHEALACSavlRDSTKRASAKTAWR 102


                  ....*....
gi 530401278   78 HQLEREDSG 86
Cdd:pfam15107 103 RTIPREASA 111
 
Name Accession Description Interval E-value
FAM216B pfam15107
FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, ...
 1-86 2.08e-38

FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins are found in eukaryotes. Proteins in this family are approximately 150 amino acids in length. In humans, the gene encoding this protein is located in the position, C13orf30.


Pssm-ID: 434464  Cd Length: 111  Bit Score: 127.24  E-value: 2.08e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401278    1 MMEASFFKhpDLTTGQKRYLCSIAKIYNANYLKMLMKRQYMHVLQHsSQKPGVLTHHRSRLSS---RYSQKQHYPCTTWR 77
Cdd:pfam15107  26 ASDTSLLK--DLTQGQQRYLYSIMKIYNSRPQWEALKRRYIHSLQH-QQLLGYITQHEALACSavlRDSTKRASAKTAWR 102


                  ....*....
gi 530401278   78 HQLEREDSG 86
Cdd:pfam15107 103 RTIPREASA 111
 
Name Accession Description Interval E-value
FAM216B pfam15107
FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, ...
 1-86 2.08e-38

FAM216B protein family; The function of this family of proteins, FAM216B, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins are found in eukaryotes. Proteins in this family are approximately 150 amino acids in length. In humans, the gene encoding this protein is located in the position, C13orf30.


Pssm-ID: 434464  Cd Length: 111  Bit Score: 127.24  E-value: 2.08e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401278    1 MMEASFFKhpDLTTGQKRYLCSIAKIYNANYLKMLMKRQYMHVLQHsSQKPGVLTHHRSRLSS---RYSQKQHYPCTTWR 77
Cdd:pfam15107  26 ASDTSLLK--DLTQGQQRYLYSIMKIYNSRPQWEALKRRYIHSLQH-QQLLGYITQHEALACSavlRDSTKRASAKTAWR 102


                  ....*....
gi 530401278   78 HQLEREDSG 86
Cdd:pfam15107 103 RTIPREASA 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH