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Conserved domains on  [gi|41871955|ref|NP_958930|]
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kinesin light chain 4 isoform a [Homo sapiens]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11420945)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes; similar to Homo sapiens pre-mRNA-splicing factor SYF1

Gene Ontology:  GO:0005515
PubMed:  10517866|30708253

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
208-409 1.60e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 108.56  E-value: 1.60e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 287
Cdd:COG0457   5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 288 gpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIy 367
Cdd:COG0457  72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 41871955 368 egqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
TPR_12 pfam13424
Tetratricopeptide repeat;
378-496 3.52e-05

Tetratricopeptide repeat;


:

Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.37  E-value: 3.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   378 VARTKNNLASCYLKQGKYAEAETLYKEILTRAHVqefgSVDDDHkpiwmhaeereemsksrhheggtpyaeyggwykack 457
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARR----LLGPDH------------------------------------ 41

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 41871955   458 vssPTVNTTLRNLGALYRRQGKLEAAETLEECALRSRRQ 496
Cdd:pfam13424  42 ---PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 33-148 8.90e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.35  E-value: 8.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955     33 LEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQ-VMLALASHLSTVESEKQKLRAQVRR 111
Cdd:TIGR02168  234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 41871955    112 LCQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 148
Cdd:TIGR02168  314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
208-409 1.60e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 108.56  E-value: 1.60e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 287
Cdd:COG0457   5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 288 gpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIy 367
Cdd:COG0457  72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 41871955 368 egqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 208-401 1.53e-21

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 99.61  E-value: 1.53e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-SIREST 286
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALeRYREVL 596

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  287 LGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 366
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 41871955  367 YEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETL 401
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 223-496 1.04e-20

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 96.91  E-value: 1.04e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  223 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSI--RESTLGPDHPAVAATLNN 300
Cdd:NF040586 404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGG 483

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  301 LAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVAR 380
Cdd:NF040586 484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  381 TKNNLASCYLKQGKYAEAETLYKEILTRAhvqefgsvdddhkpiwmhaeeREEMSKSRHheggtpyaeyggwykackvss 460
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALERY---------------------REVLGGPDH--------------------- 601

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 41871955  461 PTVNTTLRNLGALYRRQGKL-EAAETLEECALRSRRQ 496
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLeEALELAEDTYERYRRR 638
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 223-492 1.55e-19

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 93.06  E-value: 1.55e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  223 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLA 302
Cdd:NF040586 490 ALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLA 569

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  303 VLYGKRGKYKEAEPLCQRALEIREKVL-GTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVART 381
Cdd:NF040586 570 RDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAA 649

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  382 KNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGsvdDDHkpiwmhaeereemsksrhheggtPYAeyggwyKACKVssp 461
Cdd:NF040586 650 ALSLANDLRALGDADEARELAREVLDR-YRRVLG---EDH-----------------------PFT------LACRN--- 693

                        250       260       270
                 ....*....|....*....|....*....|.
gi 41871955  462 tvnttlrNLGALYRRQGKLEAAETLEECALR 492
Cdd:NF040586 694 -------NLAVLLRALGDPEEARELAEAALE 717
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 203-408 7.83e-19

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 90.75  E-value: 7.83e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  203 GGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD-VATMLNiLALVYRDQNKYKEAAHLLNDALS 281
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLD 675

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  282 IRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHP---DVAKQL-NNLALLCQNQGKYEAVE 357
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEA 755

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 41871955  358 RYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 408
Cdd:NF040586 756 LERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLAR 806
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 201-398 2.70e-18

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 89.21  E-value: 2.70e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  201 QQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERT-SGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDA 279
Cdd:NF040586 552 RVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDT 631

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  280 LSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERY 359
Cdd:NF040586 632 YERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 41871955  360 YQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEA 398
Cdd:NF040586 712 AEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAA 750
TPR_12 pfam13424
Tetratricopeptide repeat;
294-368 5.84e-17

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 75.89  E-value: 5.84e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 41871955   294 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYE 368
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 208-378 8.65e-16

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 81.12  E-value: 8.65e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 287
Cdd:NF040586 644 PDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERL 723

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  288 GPDHPAVAATLNNLAVLYGKRGKYKEAEPLC----QRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRA 363
Cdd:NF040586 724 GPDHPYTLAAAVNLANDLAALGDLDAALGEEalerLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADT 803

                        170
                 ....*....|....*
gi 41871955  364 LAIYEGQLGPDNPNV 378
Cdd:NF040586 804 LARLRRVLGPDHPDT 818
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 209-403 1.50e-09

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 58.50  E-value: 1.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   209 ARLRTlhNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 288
Cdd:TIGR02521  31 AKIRV--QLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   289 pdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvlGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIye 368
Cdd:TIGR02521  95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 41871955   369 gqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYK 403
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 304-418 2.05e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.61  E-value: 2.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  304 LYgKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVER------------------------- 358
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAREldedtlerqrrvlglgedhphtlmt 480

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41871955  359 ------------YYQRALAI----YEGQ---LGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGSVD 418
Cdd:NF040586 481 agglgadlralgRFREALELdeetLERHrrvFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR-RRRVLGPDH 558
TPR_12 pfam13424
Tetratricopeptide repeat;
378-496 3.52e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.37  E-value: 3.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   378 VARTKNNLASCYLKQGKYAEAETLYKEILTRAHVqefgSVDDDHkpiwmhaeereemsksrhheggtpyaeyggwykack 457
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARR----LLGPDH------------------------------------ 41

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 41871955   458 vssPTVNTTLRNLGALYRRQGKLEAAETLEECALRSRRQ 496
Cdd:pfam13424  42 ---PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 295-327 1.61e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.97  E-value: 1.61e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 41871955    295 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 327
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 216-296 2.56e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.14  E-value: 2.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  216 NLVIQYAAQGRYEVAvpLCKQALEDLERTSGRG------HPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGP 289
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLLGEDlragpdHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813


                 ....*..
gi 41871955  290 DHPAVAA 296
Cdd:NF040586 814 DHPDTVA 820
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 33-148 8.90e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.35  E-value: 8.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955     33 LEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQ-VMLALASHLSTVESEKQKLRAQVRR 111
Cdd:TIGR02168  234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 41871955    112 LCQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 148
Cdd:TIGR02168  314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
33-148 1.28e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.43  E-value: 1.28e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  33 LEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQvmlalaSHLSTVESEKQKLRAQVRRL 112
Cdd:COG4372  47 LEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ------EELESLQEEAEELQEELEEL 120

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 41871955 113 CQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 148
Cdd:COG4372 121 QKERQDLEQQRKQLEAQIAELQSEIAEREEELKELE 156
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 264-409 1.66e-03

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 40.80  E-value: 1.66e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 264 RDQNKYKEAAHLL----NDALSIRESTLGPDhpAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPdvAKQ 339
Cdd:cd24145 114 SELGKWELRERLLkkavEILLKLGELWMSPS--EVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHS 189

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 340 ---LNNLAL-LCQNQGK---------------------YEAVERYYQRALAIYEgqlgpDNPNVARTKN----------N 384
Cdd:cd24145 190 lvlMNNEAAeLALHALRkplsstlieasrlpqksrdqlLEAALKWAQKALDVAK-----SIKPKDRDPEcdqacalalyN 264

                       170       180
                ....*....|....*....|....*
gi 41871955 385 LASCYLKQGKYAEAETLYKEILTRA 409
Cdd:cd24145 265 LGVIAEMLGNLDEARKLYKEAISLA 289
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 209-392 5.00e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.07  E-value: 5.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   209 ARLRTLHNLviqyaAQGRYEVAVPLCKQALedlertsgRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLG 288
Cdd:PRK11447  272 ARAQGLAAV-----DSGQGGKAIPELQQAV--------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   289 PDHPAVAATLNN--LAVLYG----KRGKYKEAEPLCQRALEIREK----VLGTNhpDVAkqlnnLAllcqnQGKYEAVER 358
Cdd:PRK11447  339 RDKWESLLKVNRywLLIQQGdaalKANNLAQAERLYQQARQVDNTdsyaVLGLG--DVA-----MA-----RKDYAAAER 406

                         170       180       190
                  ....*....|....*....|....*....|....
gi 41871955   359 YYQRALaiyegQLGPDNPNVARtknNLASCYLKQ 392
Cdd:PRK11447  407 YYQQAL-----RMDPGNTNAVR---GLANLYRQQ 432
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
208-409 1.60e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 108.56  E-value: 1.60e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 287
Cdd:COG0457   5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 288 gpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIy 367
Cdd:COG0457  72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 41871955 368 egqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 208-401 1.53e-21

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 99.61  E-value: 1.53e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-SIREST 286
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALeRYREVL 596

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  287 LGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 366
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 41871955  367 YEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETL 401
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 223-496 1.04e-20

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 96.91  E-value: 1.04e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  223 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSI--RESTLGPDHPAVAATLNN 300
Cdd:NF040586 404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGG 483

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  301 LAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVAR 380
Cdd:NF040586 484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  381 TKNNLASCYLKQGKYAEAETLYKEILTRAhvqefgsvdddhkpiwmhaeeREEMSKSRHheggtpyaeyggwykackvss 460
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALERY---------------------REVLGGPDH--------------------- 601

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 41871955  461 PTVNTTLRNLGALYRRQGKL-EAAETLEECALRSRRQ 496
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLeEALELAEDTYERYRRR 638
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 182-409 1.51e-20

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 95.83  E-value: 1.51e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 182 EEEEDPSNGLSRGQGATAAQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRghPDVATMLNILAL 261
Cdd:COG3914   9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAAL--LLLAALLELAAL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 262 VYRDQNKYKEAAHLLNDALSIrestlgpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLN 341
Cdd:COG3914  87 LLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDFAEAYL 150

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 41871955 342 NLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALEL--------DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 134-405 5.20e-20

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 94.29  E-value: 5.20e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 134 EQAVAQLEEEKKHLEFLGQLRQYDEDGHTSEEKEGDATKDSLDDLFPNEEEEDPSNGLSRGQGATAAQQGGYEIPARLRT 213
Cdd:COG3914   1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 214 LHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestLGPDHpa 293
Cdd:COG3914  81 LELAALLLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALA-----LNPDF-- 145

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 294 vAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgp 373
Cdd:COG3914 146 -AEAYLNLGEALRRLGRLEEAIAALRRALELD--------PDNAEALNNLGNALQDLGRLEEAIAAYRRALEL------- 209

                       250       260       270
                ....*....|....*....|....*....|..
gi 41871955 374 dNPNVARTKNNLASCYLKQGKYAEAETLYKEI 405
Cdd:COG3914 210 -DPDNADAHSNLLFALRQACDWEVYDRFEELL 240
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 223-492 1.55e-19

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 93.06  E-value: 1.55e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  223 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLA 302
Cdd:NF040586 490 ALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLA 569

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  303 VLYGKRGKYKEAEPLCQRALEIREKVL-GTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVART 381
Cdd:NF040586 570 RDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAA 649

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  382 KNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGsvdDDHkpiwmhaeereemsksrhheggtPYAeyggwyKACKVssp 461
Cdd:NF040586 650 ALSLANDLRALGDADEARELAREVLDR-YRRVLG---EDH-----------------------PFT------LACRN--- 693

                        250       260       270
                 ....*....|....*....|....*....|.
gi 41871955  462 tvnttlrNLGALYRRQGKLEAAETLEECALR 492
Cdd:NF040586 694 -------NLAVLLRALGDPEEARELAEAALE 717
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 203-408 7.83e-19

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 90.75  E-value: 7.83e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  203 GGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD-VATMLNiLALVYRDQNKYKEAAHLLNDALS 281
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLD 675

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  282 IRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHP---DVAKQL-NNLALLCQNQGKYEAVE 357
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEA 755

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 41871955  358 RYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 408
Cdd:NF040586 756 LERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLAR 806
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 201-398 2.70e-18

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 89.21  E-value: 2.70e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  201 QQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERT-SGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDA 279
Cdd:NF040586 552 RVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDT 631

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  280 LSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERY 359
Cdd:NF040586 632 YERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 41871955  360 YQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEA 398
Cdd:NF040586 712 AEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAA 750
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
208-406 8.61e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 83.13  E-value: 8.61e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestl 287
Cdd:COG0457  39 PDDAEALYNLGLAYLRLGRYEEALADYEQALEL--------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD---- 106

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 288 gpdhPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIY 367
Cdd:COG0457 107 ----PDDAEALYNLGLALLELGRYDEAIEAYERALELD--------PDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 41871955 368 EGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEIL 406
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAI 213
TPR_12 pfam13424
Tetratricopeptide repeat;
294-368 5.84e-17

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 75.89  E-value: 5.84e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 41871955   294 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYE 368
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 221-494 1.52e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.16  E-value: 1.52e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 221 YAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgPDHPAVaatLNN 300
Cdd:COG2956  52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD-----PDDAEA---LRL 115

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 301 LAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVAR 380
Cdd:COG2956 116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 381 TKNNLASCYLKQGKYAEAETLYKEILTRahvqefgsvDDDHKPIwmhaeeREEMSKSRHHEGGtpYAEYGGWYKACKVSS 460
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQ---------DPDYLPA------LPRLAELYEKLGD--PEEALELLRKALELD 242

                       250       260       270
                ....*....|....*....|....*....|....
gi 41871955 461 PTvNTTLRNLGALYRRQGKLEAAETLEECALRSR 494
Cdd:COG2956 243 PS-DDLLLALADLLERKEGLEAALALLERQLRRH 275
TPR_12 pfam13424
Tetratricopeptide repeat;
251-327 6.23e-16

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 72.81  E-value: 6.23e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 41871955   251 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 327
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 208-378 8.65e-16

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 81.12  E-value: 8.65e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 287
Cdd:NF040586 644 PDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERL 723

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  288 GPDHPAVAATLNNLAVLYGKRGKYKEAEPLC----QRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRA 363
Cdd:NF040586 724 GPDHPYTLAAAVNLANDLAALGDLDAALGEEalerLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADT 803

                        170
                 ....*....|....*
gi 41871955  364 LAIYEGQLGPDNPNV 378
Cdd:NF040586 804 LARLRRVLGPDHPDT 818
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 220-521 3.30e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 73.22  E-value: 3.30e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 220 QYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestLGPDHPAVaatLN 299
Cdd:COG2956  17 NYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE-----RDPDRAEA---LL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 300 NLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVA 379
Cdd:COG2956  81 ELAQDYLKAGLLDRAEELLEKLLELD--------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL--------GPENA 144

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 380 RTKNNLASCYLKQGKYAEAETLYKEILtrahvqefgSVDDDHKPIWMHAEEREEMSKSrhheggtpYAEYGGWYKACKVS 459
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKAL---------KLDPDCARALLLLAELYLEQGD--------YEEAIAALERALEQ 207

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 41871955 460 SPTVNTTLRNLGALYRRQGKLEAAETLEECALrsrRQGTDPISQTKVAELLGESDGRRTSQE 521
Cdd:COG2956 208 DPDYLPALPRLAELYEKLGDPEEALELLRKAL---ELDPSDDLLLALADLLERKEGLEAALA 266
TPR_12 pfam13424
Tetratricopeptide repeat;
335-409 8.41e-14

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 66.64  E-value: 8.41e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 41871955   335 DVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 259-409 5.74e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.37  E-value: 5.74e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 259 LALVYRDQNKYKEAAHLLNDALSIRestlgPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAK 338
Cdd:COG4783  10 LAQALLLAGDYDEAEALLEKALELD-----PDNPEA---FALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 41871955 339 QLNNLALLCQNQGKYEAVERYYQRALAIYegqlgPDNPNVARtknNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:COG4783  74 ARLNLGLALLKAGDYDEALALLEKALKLD-----PEHPEAYL---RLARAYRALGRPDEAIAALEKALELD 136
TPR_10 pfam13374
Tetratricopeptide repeat;
294-335 1.03e-12

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 62.52  E-value: 1.03e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 41871955   294 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPD 335
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 209-367 1.33e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.21  E-value: 1.33e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 209 ARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlg 288
Cdd:COG4783   2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41871955 289 PDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEirekvLGTNHPDVakqLNNLALLCQNQGKYEAVERYYQRALAIY 367
Cdd:COG4783  69 PDEPEA---RLNLGLALLKAGDYDEALALLEKALK-----LDPEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
TPR_12 pfam13424
Tetratricopeptide repeat;
210-285 3.20e-12

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 62.40  E-value: 3.20e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 41871955   210 RLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRES 285
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 258-409 1.11e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.52  E-value: 1.11e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 258 ILALVYRDQNKYKEAAHLLNDALSIrestlgpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVA 337
Cdd:COG2956  13 FKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRA 76

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 41871955 338 KQLNNLALLCQNQGKYEAVERYYQRALaiyegQLGPDNPNVARtknNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:COG2956  77 EALLELAQDYLKAGLLDRAEELLEKLL-----ELDPDDAEALR---LLAEIYEQEGDWEKAIEVLERLLKLG 140
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
304-406 1.68e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.95  E-value: 1.68e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 304 LYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYyQRALAIyegqlgpdNPNVARTKN 383
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63

                        90       100
                ....*....|....*....|...
gi 41871955 384 NLASCYLKQGKYAEAETLYKEIL 406
Cdd:COG3063  64 NLAELLLELGDYDEALAYLERAL 86
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
208-371 4.80e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 4.80e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEdlertsgrGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestl 287
Cdd:COG0457  73 PDDAEALNNLGLALQALGRYEEALEDYDKALE--------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---- 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 288 gpdhPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIY 367
Cdd:COG0457 141 ----PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216


                ....
gi 41871955 368 EGQL 371
Cdd:COG0457 217 AALA 220
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 253-409 8.25e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 60.74  E-value: 8.25e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 253 ATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtn 332
Cdd:COG5010  12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-------- 83

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 41871955 333 HPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:COG5010  84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
262-366 1.54e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.87  E-value: 1.54e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 262 VYRDQNKYKEAAHLLNDALSIrestlgpdHPAVAATLNNLAVLYGKRGKYKEAEPLcQRALEIrekvlgtnHPDVAKQLN 341
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63

                        90       100
                ....*....|....*....|....*
gi 41871955 342 NLALLCQNQGKYEAVERYYQRALAI 366
Cdd:COG3063  64 NLAELLLELGDYDEALAYLERALEL 88
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 293-409 5.26e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 5.26e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 293 AVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYegqlg 372
Cdd:COG4783   2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 41871955 373 PDNPNVArtkNNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:COG4783  69 PDEPEAR---LNLGLALLKAGDYDEALALLEKALKLD 102
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 208-366 9.55e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 57.66  E-value: 9.55e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestL 287
Cdd:COG5010   9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ-----L 83

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41871955 288 GPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAI 366
Cdd:COG5010  84 DPNNPEL---YYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
216-403 1.42e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.39  E-value: 1.42e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 216 NLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgpdhPAVA 295
Cdd:COG4785  36 ALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLA 107

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 296 ATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALA---------- 365
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADLEKALEldpndperal 179

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 41871955 366 ---IYEGQLGPDnPNVARTKNNLASCYLKQGKYAEAETLYK 403
Cdd:COG4785 180 wlyLAERKLDPE-KALALLLEDWATAYLLQGDTEEARELFK 219
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 209-403 1.50e-09

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 58.50  E-value: 1.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   209 ARLRTlhNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 288
Cdd:TIGR02521  31 AKIRV--QLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   289 pdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvlGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIye 368
Cdd:TIGR02521  95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 41871955   369 gqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYK 403
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 291-409 5.70e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 5.70e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 291 HPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegq 370
Cdd:COG4235  13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL---- 80

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 41871955 371 lgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:COG4235  81 ----DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
TPR_10 pfam13374
Tetratricopeptide repeat;
252-292 6.62e-09

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 51.73  E-value: 6.62e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 41871955   252 VATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHP 292
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
221-329 7.59e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.25  E-value: 7.59e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 221 YAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLlNDALSIrestlgpdHPAVAATLNN 300
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLN 64

                        90       100
                ....*....|....*....|....*....
gi 41871955 301 LAVLYGKRGKYKEAEPLCQRALEIREKVL 329
Cdd:COG3063  65 LAELLLELGDYDEALAYLERALELDPSAL 93
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 307-408 2.49e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.30  E-value: 2.49e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 307 KRGKYKEAEPLCQRALEirekvlgtNHPD---VAKQLNNLALLCQNQGKYEAVERYYQRALAIYegqlgPDNPNVARTKN 383
Cdd:COG1729   5 KAGDYDEAIAAFKAFLK--------RYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALL 71

                        90       100
                ....*....|....*....|....*
gi 41871955 384 NLASCYLKQGKYAEAETLYKEILTR 408
Cdd:COG1729  72 KLGLSYLELGDYDKARATLEELIKK 96
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 247-407 5.22e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.25  E-value: 5.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   247 RGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlgpdHPAVAATLNNLAVLYGKRgKYKEAEPLCQRALEIRe 326
Cdd:TIGR02917 764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLEL-KDPRALEYAERALKLA- 833

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   327 kvlgtnhPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEIL 406
Cdd:TIGR02917 834 -------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898


                  .
gi 41871955   407 T 407
Cdd:TIGR02917 899 N 899
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 197-324 1.26e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.50  E-value: 1.26e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 197 ATAAQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLL 276
Cdd:COG5010  40 DELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL--------DPNNPELYYNLALLYSRSGDKDEAKEYY 111

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 41871955 277 NDALSIrestlgpdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEI 324
Cdd:COG5010 112 EKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
165-365 1.57e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 52.61  E-value: 1.57e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 165 EKEGDATKDSLDDLFPNEEEEDPSNGLSRGQGATAAQQGGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlert 244
Cdd:COG4785  27 AALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL---- 102

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 245 sgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgPDHpavAATLNNLAVLYGKRGKYKEAEPLCQRALEI 324
Cdd:COG4785 103 ----DPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD-----PDY---AYAYLNRGIALYYLGRYELAIADLEKALEL 170

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|...
gi 41871955 325 REK----------VLGTNHPDVAKQL--NNLALLCQNQGKYEAVERYYQRALA 365
Cdd:COG4785 171 DPNdperalwlylAERKLDPEKALALllEDWATAYLLQGDTEEARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 208-324 1.26e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.26  E-value: 1.26e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEdlertsgrGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestL 287
Cdd:COG4783  35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALE--------LDPDEPEARLNLGLALLKAGDYDEALALLEKALK-----L 101

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 41871955 288 GPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEI 324
Cdd:COG4783 102 DPEHPEA---YLRLARAYRALGRPDEAIAALEKALEL 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 208-324 2.38e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.31  E-value: 2.38e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 208 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLertsgrghPDVATMLNILALVYRDQNKYKEAAHLLNDALSirestL 287
Cdd:COG4235  14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALA-----L 80

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 41871955 288 GPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEI 324
Cdd:COG4235  81 DPDNPEA---LYLLGLAAFQQGDYAEAIAAWQKLLAL 114
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 263-387 3.62e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 3.62e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 263 YRDQNKYKEAAHLLNDALSirestLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvLGTNHPDVAKQLNN 342
Cdd:COG1729   3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDALLK 72

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 41871955 343 LALLCQNQGKYEAVERYYQRALAIYegqlgPDNPNVARTKNNLAS 387
Cdd:COG1729  73 LGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLAR 112
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 160-409 7.65e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 7.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   160 GHTSEEKEGDATKDSLDDLFPNEE--------EEDPSNG----------LSRGQGATA------AQQGGYEiPARLRTLh 215
Cdd:TIGR02917  18 GDQSPEELIEAAKSYLQKNKYKAAiiqlknalQKDPNDAearfllgkiyLALGDYAAAekelrkALSLGYP-KNQVLPL- 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   216 nLVIQYAAQGRYEvavplckQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgpdhPAVA 295
Cdd:TIGR02917  96 -LARAYLLQGKFQ-------QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID--------PRSL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   296 ATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRALaiyegQLGPDN 375
Cdd:TIGR02917 160 YAKLGLAQLALAENRFDEARALIDEVLTA--------DPGNVDALLLKGDLLLSLGNIELALAAYRKAI-----ALRPNN 226

                         250       260       270
                  ....*....|....*....|....*....|....
gi 41871955   376 PNVartKNNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:TIGR02917 227 IAV---LLALATILIEAGEFEEAEKHADALLKKA 257
TPR_10 pfam13374
Tetratricopeptide repeat;
211-251 8.40e-06

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 42.87  E-value: 8.40e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 41871955   211 LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD 251
Cdd:pfam13374   2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
TPR_10 pfam13374
Tetratricopeptide repeat;
336-377 1.70e-05

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 42.10  E-value: 1.70e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 41871955   336 VAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPN 377
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 304-418 2.05e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.61  E-value: 2.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  304 LYgKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVER------------------------- 358
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAREldedtlerqrrvlglgedhphtlmt 480

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41871955  359 ------------YYQRALAI----YEGQ---LGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGSVD 418
Cdd:NF040586 481 agglgadlralgRFREALELdeetLERHrrvFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR-RRRVLGPDH 558
TPR_1 pfam00515
Tetratricopeptide repeat;
295-327 2.91e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.25  E-value: 2.91e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 41871955   295 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 327
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_12 pfam13424
Tetratricopeptide repeat;
378-496 3.52e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.37  E-value: 3.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   378 VARTKNNLASCYLKQGKYAEAETLYKEILTRAHVqefgSVDDDHkpiwmhaeereemsksrhheggtpyaeyggwykack 457
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARR----LLGPDH------------------------------------ 41

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 41871955   458 vssPTVNTTLRNLGALYRRQGKLEAAETLEECALRSRRQ 496
Cdd:pfam13424  42 ---PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 333-410 4.71e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 4.71e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 41871955 333 HPDVAKQLNNLALLCQNQGKYEAVERYYQRALaiyegQLGPDNPNVartKNNLASCYLKQGKYAEAETLYKEILTRAH 410
Cdd:COG4235  13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKAL-----RLDPDNADA---LLDLAEALLAAGDTEEAEELLERALALDP 82
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 295-327 1.61e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.97  E-value: 1.61e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 41871955    295 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 327
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 216-296 2.56e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.14  E-value: 2.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  216 NLVIQYAAQGRYEVAvpLCKQALEDLERTSGRG------HPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGP 289
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLLGEDlragpdHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813


                 ....*..
gi 41871955  290 DHPAVAA 296
Cdd:NF040586 814 DHPDTVA 820
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 259-324 4.83e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.86  E-value: 4.83e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 41871955   259 LALVYRDQNKYKEAAHLLNDALsiresTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEI 324
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAAL-----ARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
296-406 4.87e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.82  E-value: 4.87e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 296 ATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdN 375
Cdd:COG4785  32 AAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL--------D 103

                        90       100       110
                ....*....|....*....|....*....|.
gi 41871955 376 PNVARTKNNLASCYLKQGKYAEAETLYKEIL 406
Cdd:COG4785 104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
TPR_1 pfam00515
Tetratricopeptide repeat;
337-368 5.13e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 5.13e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 41871955   337 AKQLNNLALLCQNQGKYEAVERYYQRALAIYE 368
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 342-409 7.97e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.09  E-value: 7.97e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 41871955   342 NLALLCQNQGKYEAVERYYQRALAiyegqLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 33-148 8.90e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.35  E-value: 8.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955     33 LEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQ-VMLALASHLSTVESEKQKLRAQVRR 111
Cdd:TIGR02168  234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 41871955    112 LCQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 148
Cdd:TIGR02168  314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
TPR_7 pfam13176
Tetratricopeptide repeat;
297-330 1.02e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 36.75  E-value: 1.02e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 41871955   297 TLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLG 330
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
33-148 1.28e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.43  E-value: 1.28e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  33 LEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQvmlalaSHLSTVESEKQKLRAQVRRL 112
Cdd:COG4372  47 LEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ------EELESLQEEAEELQEELEEL 120

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 41871955 113 CQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 148
Cdd:COG4372 121 QKERQDLEQQRKQLEAQIAELQSEIAEREEELKELE 156
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 264-409 1.66e-03

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 40.80  E-value: 1.66e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 264 RDQNKYKEAAHLL----NDALSIRESTLGPDhpAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPdvAKQ 339
Cdd:cd24145 114 SELGKWELRERLLkkavEILLKLGELWMSPS--EVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHS 189

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 340 ---LNNLAL-LCQNQGK---------------------YEAVERYYQRALAIYEgqlgpDNPNVARTKN----------N 384
Cdd:cd24145 190 lvlMNNEAAeLALHALRkplsstlieasrlpqksrdqlLEAALKWAQKALDVAK-----SIKPKDRDPEcdqacalalyN 264

                       170       180
                ....*....|....*....|....*
gi 41871955 385 LASCYLKQGKYAEAETLYKEILTRA 409
Cdd:cd24145 265 LGVIAEMLGNLDEARKLYKEAISLA 289
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
208-287 1.94e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 1.94e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 208 PARLRTLHNLVIQYAAQGRYEVAVPLcKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 287
Cdd:COG3063  23 PDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 54-409 1.97e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 1.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955    54 LQQGGHEEGLVH-EKARQLrrsmeniELGLSEAQVMLALaSHLSTVESEKQklRAQVRRLCQE---NQWLRDELAGTQQR 129
Cdd:TIGR02917 408 LSQGDPSEAIADlETAAQL-------DPELGRADLLLIL-SYLRSGQFDKA--LAAAKKLEKKqpdNASLHNLLGAIYLG 477

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   130 LQRSEQAVAQLEE----EKKHLEFLGQLRQYDEDghtseEKEGDATKDSLDDLFpneeEEDPSN--------GLSRGQGA 197
Cdd:TIGR02917 478 KGDLAKAREAFEKalsiEPDFFPAAANLARIDIQ-----EGNPDDAIQRFEKVL----TIDPKNlrailalaGLYLRTGN 548

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   198 TAAQQGGYEIPARLrtlHNLVIQ-YAAQGRYEVAVPLCKQALEDLERTSGrGHPDVATMLNILALVYRDQNKYKEAAHLL 276
Cdd:TIGR02917 549 EEEAVAWLEKAAEL---NPQEIEpALALAQYYLGKGQLKKALAILNEAAD-AAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   277 NDALSIRestlgPDHPAVaatLNNLAVLYGKRGKYKEAEPLCQRALEIRE--------------------------KVLG 330
Cdd:TIGR02917 625 KKLLALQ-----PDSALA---LLLLADAYAVMKNYAKAITSLKRALELKPdnteaqiglaqlllaakrtesakkiaKSLQ 696

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   331 TNHPDVA---KQLNNLALLcqnQGKYEAVERYYQRALAIYEG-----QLG--------------------PDNPNVARTK 382
Cdd:TIGR02917 697 KQHPKAAlgfELEGDLYLR---QKDYPAAIQAYRKALKRAPSsqnaiKLHrallasgntaeavktleawlKTHPNDAVLR 773

                         410       420
                  ....*....|....*....|....*..
gi 41871955   383 NNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:TIGR02917 774 TALAELYLAQKDYDKAIKHYQTVVKKA 800
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 219-314 2.07e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 2.07e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955 219 IQYAAQGRYEVAVPLCKQALEDlertsgrgHPD---VATMLNILALVYRDQNKYKEAAHLLNDALSirestLGPDHPAVA 295
Cdd:COG1729   1 KALLKAGDYDEAIAAFKAFLKR--------YPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAP 67

                        90
                ....*....|....*....
gi 41871955 296 ATLNNLAVLYGKRGKYKEA 314
Cdd:COG1729  68 DALLKLGLSYLELGDYDKA 86
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 220-419 2.64e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 40.37  E-value: 2.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   220 QYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrESTLGPDHPAVAATLn 299
Cdd:pfam17874  89 ILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQL-GRQWEPDAAVDAYVL- 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   300 nLAVLYGKRGKYKEAEPLCQRALEI-REKVLGTNHPDVAKQLnnLALLCQNQGKYEAVEryyqRALAIYEGQLGPDNPNV 378
Cdd:pfam17874 167 -LARIALAQGELEEALTLLRRAELLaRQSFFHVDWLANAERV--RVRLWLARGDLRAAV----RWLRAAEPPSDADNHFL 239

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 41871955   379 ARTKNNLASCYLKQGKYAEAETLYKEILTRAhvQEFGSVDD 419
Cdd:pfam17874 240 ERELRNLARVLLALGRFDDALSLLERLQNLA--EQLGRVRS 278
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 239-371 2.82e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 40.74  E-value: 2.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   239 EDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLC 318
Cdd:TIGR00990 453 MATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 41871955   319 QRALEIrekvlgtnHPDVAKQLNNLALLCQNQGKYEAVERYYQRA--LAIYEGQL 371
Cdd:TIGR00990 532 EKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAaeLARTEGEL 578
TPR_10 pfam13374
Tetratricopeptide repeat;
378-421 4.33e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 35.17  E-value: 4.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 41871955   378 VARTKNNLASCYLKQGKYAEAETLYKEILTRaHVQEFGsvdDDH 421
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAI-RERVLG---PDH 40
TPR_1 pfam00515
Tetratricopeptide repeat;
379-406 4.38e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 4.38e-03
                          10        20
                  ....*....|....*....|....*...
gi 41871955   379 ARTKNNLASCYLKQGKYAEAETLYKEIL 406
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
TPR_19 pfam14559
Tetratricopeptide repeat;
350-406 4.74e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 4.74e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 41871955   350 QGKYEAVERYYQRALAIYegqlgPDNPNVartKNNLASCYLKQGKYAEAETLYKEIL 406
Cdd:pfam14559   1 EGDYAEALELLEQALAED-----PDNAEA---RLGLAEALLALGRLDEAEALLAALP 49
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 337-366 4.99e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 4.99e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 41871955    337 AKQLNNLALLCQNQGKYEAVERYYQRALAI 366
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 209-392 5.00e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.07  E-value: 5.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   209 ARLRTLHNLviqyaAQGRYEVAVPLCKQALedlertsgRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLG 288
Cdd:PRK11447  272 ARAQGLAAV-----DSGQGGKAIPELQQAV--------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   289 PDHPAVAATLNN--LAVLYG----KRGKYKEAEPLCQRALEIREK----VLGTNhpDVAkqlnnLAllcqnQGKYEAVER 358
Cdd:PRK11447  339 RDKWESLLKVNRywLLIQQGdaalKANNLAQAERLYQQARQVDNTdsyaVLGLG--DVA-----MA-----RKDYAAAER 406

                         170       180       190
                  ....*....|....*....|....*....|....
gi 41871955   359 YYQRALaiyegQLGPDNPNVARtknNLASCYLKQ 392
Cdd:PRK11447  407 YYQQAL-----RMDPGNTNAVR---GLANLYRQQ 432
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 379-409 5.45e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 5.45e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 41871955    379 ARTKNNLASCYLKQGKYAEAETLYKEILTRA 409
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELD 31
COG5283 COG5283
Phage-related tail protein [Mobilome: prophages, transposons];
27-151 5.77e-03

Phage-related tail protein [Mobilome: prophages, transposons];


Pssm-ID: 444094 [Multi-domain]  Cd Length: 747  Bit Score: 39.84  E-value: 5.77e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  27 RLVSQGLEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQVMLALASHLSTVESekQKLR 106
Cdd:COG5283   6 GAVDKPFKSALESAKQRVAALAQALKALEAPTRALARALERAKQAAARLQTKYNKLRQSLQRLRQALDQAGIDT--RQLS 83

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 41871955 107 AQVRRLCQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLEFLG 151
Cdd:COG5283  84 AAQRRLRSSLEQTNRQLERQQQRLARLGARQDRLKAARARLQRLA 128
TPR_10 pfam13374
Tetratricopeptide repeat;
465-496 7.75e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 34.79  E-value: 7.75e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 41871955   465 TTLRNLGALYRRQGKLEAAETLEECALRSRRQ 496
Cdd:pfam13374   3 SSLNNLANALRAQGRYDEAEELLEEALAIRER 34
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 221-280 8.20e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.39  E-value: 8.20e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955   221 YAAQGRYEVAVPLCKQALEdlertSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 280
Cdd:pfam13432   7 ALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAAL 61
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 309-399 9.86e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 37.34  E-value: 9.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41871955  309 GKYKEAEPLCQRALEIREkvlgtNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIyegqlgpdNPNVARTKNNLASC 388
Cdd:PRK02603  49 GEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--------NPKQPSALNNIAVI 115

                         90
                 ....*....|.
gi 41871955  389 YLKQGKYAEAE 399
Cdd:PRK02603 116 YHKRGEKAEEA 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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