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Conserved domains on  [gi|39841055|ref|NP_950193|]
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BEN domain-containing protein 3 [Mus musculus]

Protein Classification

BEN domain-containing protein( domain architecture ID 10565270)

BEN domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 734-813 2.14e-20

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


:

Pssm-ID: 214981  Cd Length: 80  Bit Score: 85.88  E-value: 2.14e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055    734 GNFAARLLVRLFPELFTTENLRLQYN-HSGACNKKQLDPTRLRLIRHYVEAVYPVEKMEEVWHyECIPSIDERCRRPNRK 812
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWK-VCIQAINNKCRRLRRR 79


                   .
gi 39841055    813 K 813
Cdd:smart01025  80 K 80
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 405-475 1.34e-17

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


:

Pssm-ID: 214981  Cd Length: 80  Bit Score: 78.17  E-value: 1.34e-17
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 39841055    405 GEFAVFLLHRLFPELFDHRKLGEQY-SCYGDGGKQELDPQRLQIIRNYTEIYFPDMQEEEAWlQQCAQRIND 475
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKrSRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDW-KVCIQAINN 71
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 262-337 2.54e-17

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


:

Pssm-ID: 463133  Cd Length: 76  Bit Score: 77.03  E-value: 2.54e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055   262 DLACRLLLQLFPElfsdvDFSRGCSACGFAA------KRKLESLHLQLIRNYVEVYYPNVKDTAvWQAECLPQLNDFFSR 335
Cdd:pfam10523   1 KLARKLLVKLFPE-----DTLANHSGTGKRSpafppnKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTIRR 74


                  ..
gi 39841055   336 FW 337
Cdd:pfam10523  75 KC 76
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 568-642 2.27e-15

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


:

Pssm-ID: 214981  Cd Length: 80  Bit Score: 71.63  E-value: 2.27e-15
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 39841055    568 GNFASRLLVHLFPELFTHENLRKQYN-CSGSLGKKQLDPARIRLIRHYVQLLYPRAKNDRVWTLeFVGKLDERCRR 642
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWKV-CIQAINNKCRR 75
 
Name Accession Description Interval E-value
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 734-813 2.14e-20

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 85.88  E-value: 2.14e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055    734 GNFAARLLVRLFPELFTTENLRLQYN-HSGACNKKQLDPTRLRLIRHYVEAVYPVEKMEEVWHyECIPSIDERCRRPNRK 812
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWK-VCIQAINNKCRRLRRR 79


                   .
gi 39841055    813 K 813
Cdd:smart01025  80 K 80
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 405-475 1.34e-17

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 78.17  E-value: 1.34e-17
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 39841055    405 GEFAVFLLHRLFPELFDHRKLGEQY-SCYGDGGKQELDPQRLQIIRNYTEIYFPDMQEEEAWlQQCAQRIND 475
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKrSRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDW-KVCIQAINN 71
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 262-337 2.54e-17

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 77.03  E-value: 2.54e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055   262 DLACRLLLQLFPElfsdvDFSRGCSACGFAA------KRKLESLHLQLIRNYVEVYYPNVKDTAvWQAECLPQLNDFFSR 335
Cdd:pfam10523   1 KLARKLLVKLFPE-----DTLANHSGTGKRSpafppnKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTIRR 74


                  ..
gi 39841055   336 FW 337
Cdd:pfam10523  75 KC 76
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 261-340 5.83e-17

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 76.25  E-value: 5.83e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055    261 GDLACRLLLQLFPELFSDVDFSRGCSA-CGFAAKRKLESLHLQLIRNYVEVYYPNVKDTAVWQAeCLPQLNDFFSRFWAQ 339
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRSrTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWKV-CIQAINNKCRRLRRR 79


                   .
gi 39841055    340 R 340
Cdd:smart01025  80 K 80
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 735-809 8.17e-17

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 75.49  E-value: 8.17e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055   735 NFAARLLVRLFPElfttenlRLQYNHSG--------ACNKKQLDPTRLRLIRHYVEAVYPVEKMEEvWHYECIPSIDERC 806
Cdd:pfam10523   1 KLARKLLVKLFPE-------DTLANHSGtgkrspafPPNKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTI 72


                  ...
gi 39841055   807 RRP 809
Cdd:pfam10523  73 RRK 75
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 568-642 2.27e-15

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 71.63  E-value: 2.27e-15
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 39841055    568 GNFASRLLVHLFPELFTHENLRKQYN-CSGSLGKKQLDPARIRLIRHYVQLLYPRAKNDRVWTLeFVGKLDERCRR 642
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWKV-CIQAINNKCRR 75
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 569-644 1.59e-14

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 68.94  E-value: 1.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055   569 NFASRLLVHLFPElfthenlRKQYNCSGS--------LGKKQLDPARIRLIRHYVQLLYPRAKNDRVWTlEFVGKLDERC 640
Cdd:pfam10523   1 KLARKLLVKLFPE-------DTLANHSGTgkrspafpPNKKGLDPLKVQLIRNYVEERFPENKNEEWWN-ECVPRINKTI 72


                  ....
gi 39841055   641 RRRD 644
Cdd:pfam10523  73 RRKC 76
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 406-475 2.40e-11

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 60.08  E-value: 2.40e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 39841055   406 EFAVFLLHRLFPE--LFDHRKLGEQYSCYgDGGKQELDPQRLQIIRNYTEIYFPDMQEEEaWLQQCAQRIND 475
Cdd:pfam10523   1 KLARKLLVKLFPEdtLANHSGTGKRSPAF-PPNKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINK 70
 
Name Accession Description Interval E-value
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 734-813 2.14e-20

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 85.88  E-value: 2.14e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055    734 GNFAARLLVRLFPELFTTENLRLQYN-HSGACNKKQLDPTRLRLIRHYVEAVYPVEKMEEVWHyECIPSIDERCRRPNRK 812
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWK-VCIQAINNKCRRLRRR 79


                   .
gi 39841055    813 K 813
Cdd:smart01025  80 K 80
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 405-475 1.34e-17

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 78.17  E-value: 1.34e-17
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 39841055    405 GEFAVFLLHRLFPELFDHRKLGEQY-SCYGDGGKQELDPQRLQIIRNYTEIYFPDMQEEEAWlQQCAQRIND 475
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKrSRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDW-KVCIQAINN 71
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 262-337 2.54e-17

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 77.03  E-value: 2.54e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055   262 DLACRLLLQLFPElfsdvDFSRGCSACGFAA------KRKLESLHLQLIRNYVEVYYPNVKDTAvWQAECLPQLNDFFSR 335
Cdd:pfam10523   1 KLARKLLVKLFPE-----DTLANHSGTGKRSpafppnKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTIRR 74


                  ..
gi 39841055   336 FW 337
Cdd:pfam10523  75 KC 76
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 261-340 5.83e-17

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 76.25  E-value: 5.83e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055    261 GDLACRLLLQLFPELFSDVDFSRGCSA-CGFAAKRKLESLHLQLIRNYVEVYYPNVKDTAVWQAeCLPQLNDFFSRFWAQ 339
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRSrTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWKV-CIQAINNKCRRLRRR 79


                   .
gi 39841055    340 R 340
Cdd:smart01025  80 K 80
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 735-809 8.17e-17

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 75.49  E-value: 8.17e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055   735 NFAARLLVRLFPElfttenlRLQYNHSG--------ACNKKQLDPTRLRLIRHYVEAVYPVEKMEEvWHYECIPSIDERC 806
Cdd:pfam10523   1 KLARKLLVKLFPE-------DTLANHSGtgkrspafPPNKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINKTI 72


                  ...
gi 39841055   807 RRP 809
Cdd:pfam10523  73 RRK 75
BEN smart01025
The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP ...
 568-642 2.27e-15

The BEN domain is found in diverse animal proteins; Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.


Pssm-ID: 214981  Cd Length: 80  Bit Score: 71.63  E-value: 2.27e-15
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 39841055    568 GNFASRLLVHLFPELFTHENLRKQYN-CSGSLGKKQLDPARIRLIRHYVQLLYPRAKNDRVWTLeFVGKLDERCRR 642
Cdd:smart01025   1 SLFARYLLRVLFPRETLANSSVTGKRsRTGGSGKKPLDPNKVQAIREYLEERFPSVDLDEDWKV-CIQAINNKCRR 75
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 569-644 1.59e-14

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 68.94  E-value: 1.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39841055   569 NFASRLLVHLFPElfthenlRKQYNCSGS--------LGKKQLDPARIRLIRHYVQLLYPRAKNDRVWTlEFVGKLDERC 640
Cdd:pfam10523   1 KLARKLLVKLFPE-------DTLANHSGTgkrspafpPNKKGLDPLKVQLIRNYVEERFPENKNEEWWN-ECVPRINKTI 72


                  ....
gi 39841055   641 RRRD 644
Cdd:pfam10523  73 RRKC 76
BEN pfam10523
BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and ...
 406-475 2.40e-11

BEN domain; The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organization and transcription. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities.


Pssm-ID: 463133  Cd Length: 76  Bit Score: 60.08  E-value: 2.40e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 39841055   406 EFAVFLLHRLFPE--LFDHRKLGEQYSCYgDGGKQELDPQRLQIIRNYTEIYFPDMQEEEaWLQQCAQRIND 475
Cdd:pfam10523   1 KLARKLLVKLFPEdtLANHSGTGKRSPAF-PPNKKGLDPLKVQLIRNYVEERFPENKNEE-WWNECVPRINK 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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