NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|37674218|ref|NP_932771|]
View 

exocyst complex component 8 [Mus musculus]

Protein Classification

PH_RalBD_exo84 and Exo84_C domain-containing protein( domain architecture ID 11179642)

protein containing domains Vps51, PH_RalBD_exo84, and Exo84_C

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Exo84_C pfam16528
Exocyst component 84 C-terminal; Exo84_C is the C-terminal helical region of the exocyst ...
326-531 4.14e-68

Exocyst component 84 C-terminal; Exo84_C is the C-terminal helical region of the exocyst component Exo84. This region resembles a cullin-repeat, a multi-helical bundle. The exocyst is a large complex that is required for tethering vesicles at the final stages of the exocytic pathway in all eukaryotes. Exocyst subunits are composed of mostly helical modules strung together into long rods.


:

Pssm-ID: 465161  Cd Length: 203  Bit Score: 222.10  E-value: 4.14e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218   326 EWIQELPEDLDVCIAQRDFEGAVDLLDKLNHYLEDKPSPPPVKELRAK--VDERVRQLTEVLVFELSPDRSLRGGPKATR 403
Cdd:pfam16528   1 RWVDDLPEELDIDIARRNFEEAVDLLEKLESKLKDLADGLKDNEAILHdlINLKVDQRREKLASKLSRSLLSTNEVTKLK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218   404 RAVSQLIRLGQCTKACELFLRNRAAAVHTAIRQLRIEGATLLYIHKLCHVFFTSLLETAREFETDFagTDSGCYSAFVVW 483
Cdd:pfam16528  81 RNVSWLIRLGLEDRARELFLENRSNLIQKRIRQIGFEGDLTLYITQLAVVRFTLIKNTVQEFQECF--PDNKMSSALVKW 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 37674218   484 ARSAMGMFVDAFSKQVFDSKESlstAAECVKVAKEHCQQLGEIGLDLT 531
Cdd:pfam16528 159 AKEEVDKFFDLLSRQLLNDEMV---SPECIKIARKQADDLKEVGLDFV 203
PH_RalBD_exo84 cd01226
Exocyst complex 84-kDa subunit Ral-binding domain/Pleckstrin Homology (PH) domain; The Sec6/8 ...
167-279 9.07e-57

Exocyst complex 84-kDa subunit Ral-binding domain/Pleckstrin Homology (PH) domain; The Sec6/8 complex, also called the exocyst complex, forms an octameric protein (Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84) involved in the tethering of secretory vesicles to specific regions on the plasma membrane. The regulation of Sec6/8 complex differs between mammals and yeast. Mamalian Exo84 and Sec5 are effector targets for active Ral GTPases which are not present in yeast. Ral GTPases are members of the Ras superfamily, and as such cycle between an active GTP-bound state and an inactive GDP-bound state. The Exo84 Ral-binding domain adopts a PH domain fold. Mammalian Exo84 and Sec5 competitively bind to active RalA. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


:

Pssm-ID: 269933  Cd Length: 115  Bit Score: 188.63  E-value: 9.07e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218 167 LETPGQYLVYNGDLVEYDADHMAQLQRVHGFLMNDCLLVATWLPQRRG--MYRYNALYPLDRLAVVNVKDNPPMKDMFKL 244
Cdd:cd01226   1 VEVPGRYLLHEGDLLELDPDDYKPIQKVHLFLLNDVLLIASWLPNRRGpvRYKFQALYPLEDLAVVNVKDLGPVKNAFKL 80
                        90       100       110
                ....*....|....*....|....*....|....*
gi 37674218 245 LMFPESRIFQAENAKIKREWLEVLEETKRALSDKR 279
Cdd:cd01226  81 LTFPETRVFQCENAKIKKEWLEKFEQAKRAKLAKE 115
Vps51 pfam08700
Vps51/Vps67; This family includes a presumed domain found in a number of components of ...
13-97 5.21e-18

Vps51/Vps67; This family includes a presumed domain found in a number of components of vesicular transport. The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1. Cog1_N is the N-terminus of the Cog1 subunit of the eight-unit Conserved Oligomeric Golgi (COG) complex that participates in retrograde vesicular transport and is required to maintain normal Golgi structure and function. The subunits are located in two lobes and Cog1 serves to bind the two lobes together probably via the highly conserved N-terminal domain of approximately 85 residues.


:

Pssm-ID: 462568  Cd Length: 86  Bit Score: 79.25  E-value: 5.21e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218    13 LESGGFEARLYVKQLSQQSDgDRDLQEHRQRVQALAEETAQNLKRNVYQNYRQFIETAREISYLESEMYQLSHLLTEQKS 92
Cdd:pfam08700   1 LDSPSFDADRYVSELLSKAT-LEELLQFESSLRSEIERLDSELKQLVYDNYRDLIKAADTISKMKSEMEQLSQKLSELKQ 79

                  ....*
gi 37674218    93 SLESI 97
Cdd:pfam08700  80 ALSKI 84
 
Name Accession Description Interval E-value
Exo84_C pfam16528
Exocyst component 84 C-terminal; Exo84_C is the C-terminal helical region of the exocyst ...
326-531 4.14e-68

Exocyst component 84 C-terminal; Exo84_C is the C-terminal helical region of the exocyst component Exo84. This region resembles a cullin-repeat, a multi-helical bundle. The exocyst is a large complex that is required for tethering vesicles at the final stages of the exocytic pathway in all eukaryotes. Exocyst subunits are composed of mostly helical modules strung together into long rods.


Pssm-ID: 465161  Cd Length: 203  Bit Score: 222.10  E-value: 4.14e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218   326 EWIQELPEDLDVCIAQRDFEGAVDLLDKLNHYLEDKPSPPPVKELRAK--VDERVRQLTEVLVFELSPDRSLRGGPKATR 403
Cdd:pfam16528   1 RWVDDLPEELDIDIARRNFEEAVDLLEKLESKLKDLADGLKDNEAILHdlINLKVDQRREKLASKLSRSLLSTNEVTKLK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218   404 RAVSQLIRLGQCTKACELFLRNRAAAVHTAIRQLRIEGATLLYIHKLCHVFFTSLLETAREFETDFagTDSGCYSAFVVW 483
Cdd:pfam16528  81 RNVSWLIRLGLEDRARELFLENRSNLIQKRIRQIGFEGDLTLYITQLAVVRFTLIKNTVQEFQECF--PDNKMSSALVKW 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 37674218   484 ARSAMGMFVDAFSKQVFDSKESlstAAECVKVAKEHCQQLGEIGLDLT 531
Cdd:pfam16528 159 AKEEVDKFFDLLSRQLLNDEMV---SPECIKIARKQADDLKEVGLDFV 203
PH_RalBD_exo84 cd01226
Exocyst complex 84-kDa subunit Ral-binding domain/Pleckstrin Homology (PH) domain; The Sec6/8 ...
167-279 9.07e-57

Exocyst complex 84-kDa subunit Ral-binding domain/Pleckstrin Homology (PH) domain; The Sec6/8 complex, also called the exocyst complex, forms an octameric protein (Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84) involved in the tethering of secretory vesicles to specific regions on the plasma membrane. The regulation of Sec6/8 complex differs between mammals and yeast. Mamalian Exo84 and Sec5 are effector targets for active Ral GTPases which are not present in yeast. Ral GTPases are members of the Ras superfamily, and as such cycle between an active GTP-bound state and an inactive GDP-bound state. The Exo84 Ral-binding domain adopts a PH domain fold. Mammalian Exo84 and Sec5 competitively bind to active RalA. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 269933  Cd Length: 115  Bit Score: 188.63  E-value: 9.07e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218 167 LETPGQYLVYNGDLVEYDADHMAQLQRVHGFLMNDCLLVATWLPQRRG--MYRYNALYPLDRLAVVNVKDNPPMKDMFKL 244
Cdd:cd01226   1 VEVPGRYLLHEGDLLELDPDDYKPIQKVHLFLLNDVLLIASWLPNRRGpvRYKFQALYPLEDLAVVNVKDLGPVKNAFKL 80
                        90       100       110
                ....*....|....*....|....*....|....*
gi 37674218 245 LMFPESRIFQAENAKIKREWLEVLEETKRALSDKR 279
Cdd:cd01226  81 LTFPETRVFQCENAKIKKEWLEKFEQAKRAKLAKE 115
Vps51 pfam08700
Vps51/Vps67; This family includes a presumed domain found in a number of components of ...
13-97 5.21e-18

Vps51/Vps67; This family includes a presumed domain found in a number of components of vesicular transport. The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1. Cog1_N is the N-terminus of the Cog1 subunit of the eight-unit Conserved Oligomeric Golgi (COG) complex that participates in retrograde vesicular transport and is required to maintain normal Golgi structure and function. The subunits are located in two lobes and Cog1 serves to bind the two lobes together probably via the highly conserved N-terminal domain of approximately 85 residues.


Pssm-ID: 462568  Cd Length: 86  Bit Score: 79.25  E-value: 5.21e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218    13 LESGGFEARLYVKQLSQQSDgDRDLQEHRQRVQALAEETAQNLKRNVYQNYRQFIETAREISYLESEMYQLSHLLTEQKS 92
Cdd:pfam08700   1 LDSPSFDADRYVSELLSKAT-LEELLQFESSLRSEIERLDSELKQLVYDNYRDLIKAADTISKMKSEMEQLSQKLSELKQ 79

                  ....*
gi 37674218    93 SLESI 97
Cdd:pfam08700  80 ALSKI 84
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
174-273 3.26e-06

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 46.00  E-value: 3.26e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218    174 LVYNGDLVEYDADHMAQLQRVHGFLMNDCLLVATWLPQRRGmYRYNALYPLDRLAVVNVKDNPPMKD--MFKLLMF-PES 250
Cdd:smart00233   1 VIKEGWLYKKSGGGKKSWKKRYFVLFNSTLLYYKSKKDKKS-YKPKGSIDLSGCTVREAPDPDSSKKphCFEIKTSdRKT 79
                           90       100
                   ....*....|....*....|...
gi 37674218    251 RIFQAENAKIKREWLEVLEETKR 273
Cdd:smart00233  80 LLLQAESEEEREKWVEALRKAIA 102
 
Name Accession Description Interval E-value
Exo84_C pfam16528
Exocyst component 84 C-terminal; Exo84_C is the C-terminal helical region of the exocyst ...
326-531 4.14e-68

Exocyst component 84 C-terminal; Exo84_C is the C-terminal helical region of the exocyst component Exo84. This region resembles a cullin-repeat, a multi-helical bundle. The exocyst is a large complex that is required for tethering vesicles at the final stages of the exocytic pathway in all eukaryotes. Exocyst subunits are composed of mostly helical modules strung together into long rods.


Pssm-ID: 465161  Cd Length: 203  Bit Score: 222.10  E-value: 4.14e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218   326 EWIQELPEDLDVCIAQRDFEGAVDLLDKLNHYLEDKPSPPPVKELRAK--VDERVRQLTEVLVFELSPDRSLRGGPKATR 403
Cdd:pfam16528   1 RWVDDLPEELDIDIARRNFEEAVDLLEKLESKLKDLADGLKDNEAILHdlINLKVDQRREKLASKLSRSLLSTNEVTKLK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218   404 RAVSQLIRLGQCTKACELFLRNRAAAVHTAIRQLRIEGATLLYIHKLCHVFFTSLLETAREFETDFagTDSGCYSAFVVW 483
Cdd:pfam16528  81 RNVSWLIRLGLEDRARELFLENRSNLIQKRIRQIGFEGDLTLYITQLAVVRFTLIKNTVQEFQECF--PDNKMSSALVKW 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 37674218   484 ARSAMGMFVDAFSKQVFDSKESlstAAECVKVAKEHCQQLGEIGLDLT 531
Cdd:pfam16528 159 AKEEVDKFFDLLSRQLLNDEMV---SPECIKIARKQADDLKEVGLDFV 203
PH_RalBD_exo84 cd01226
Exocyst complex 84-kDa subunit Ral-binding domain/Pleckstrin Homology (PH) domain; The Sec6/8 ...
167-279 9.07e-57

Exocyst complex 84-kDa subunit Ral-binding domain/Pleckstrin Homology (PH) domain; The Sec6/8 complex, also called the exocyst complex, forms an octameric protein (Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84) involved in the tethering of secretory vesicles to specific regions on the plasma membrane. The regulation of Sec6/8 complex differs between mammals and yeast. Mamalian Exo84 and Sec5 are effector targets for active Ral GTPases which are not present in yeast. Ral GTPases are members of the Ras superfamily, and as such cycle between an active GTP-bound state and an inactive GDP-bound state. The Exo84 Ral-binding domain adopts a PH domain fold. Mammalian Exo84 and Sec5 competitively bind to active RalA. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 269933  Cd Length: 115  Bit Score: 188.63  E-value: 9.07e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218 167 LETPGQYLVYNGDLVEYDADHMAQLQRVHGFLMNDCLLVATWLPQRRG--MYRYNALYPLDRLAVVNVKDNPPMKDMFKL 244
Cdd:cd01226   1 VEVPGRYLLHEGDLLELDPDDYKPIQKVHLFLLNDVLLIASWLPNRRGpvRYKFQALYPLEDLAVVNVKDLGPVKNAFKL 80
                        90       100       110
                ....*....|....*....|....*....|....*
gi 37674218 245 LMFPESRIFQAENAKIKREWLEVLEETKRALSDKR 279
Cdd:cd01226  81 LTFPETRVFQCENAKIKKEWLEKFEQAKRAKLAKE 115
Vps51 pfam08700
Vps51/Vps67; This family includes a presumed domain found in a number of components of ...
13-97 5.21e-18

Vps51/Vps67; This family includes a presumed domain found in a number of components of vesicular transport. The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1. Cog1_N is the N-terminus of the Cog1 subunit of the eight-unit Conserved Oligomeric Golgi (COG) complex that participates in retrograde vesicular transport and is required to maintain normal Golgi structure and function. The subunits are located in two lobes and Cog1 serves to bind the two lobes together probably via the highly conserved N-terminal domain of approximately 85 residues.


Pssm-ID: 462568  Cd Length: 86  Bit Score: 79.25  E-value: 5.21e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218    13 LESGGFEARLYVKQLSQQSDgDRDLQEHRQRVQALAEETAQNLKRNVYQNYRQFIETAREISYLESEMYQLSHLLTEQKS 92
Cdd:pfam08700   1 LDSPSFDADRYVSELLSKAT-LEELLQFESSLRSEIERLDSELKQLVYDNYRDLIKAADTISKMKSEMEQLSQKLSELKQ 79

                  ....*
gi 37674218    93 SLESI 97
Cdd:pfam08700  80 ALSKI 84
PH cd00821
Pleckstrin homology (PH) domain; PH domains have diverse functions, but in general are ...
176-268 2.89e-06

Pleckstrin homology (PH) domain; PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 275388 [Multi-domain]  Cd Length: 92  Bit Score: 46.00  E-value: 2.89e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218 176 YNGDLVEYDADHMAQLQRVHGFLMNDCLLVATwlPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRI-FQ 254
Cdd:cd00821   1 KEGYLLKRGGGGLKSWKKRWFVLFEGVLLYYK--SKKDSSYKPKGSIPLSGILEVEEVSPKERPHCFELVTPDGRTYyLQ 78
                        90
                ....*....|....
gi 37674218 255 AENAKIKREWLEVL 268
Cdd:cd00821  79 ADSEEERQEWLKAL 92
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
174-273 3.26e-06

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 46.00  E-value: 3.26e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218    174 LVYNGDLVEYDADHMAQLQRVHGFLMNDCLLVATWLPQRRGmYRYNALYPLDRLAVVNVKDNPPMKD--MFKLLMF-PES 250
Cdd:smart00233   1 VIKEGWLYKKSGGGKKSWKKRYFVLFNSTLLYYKSKKDKKS-YKPKGSIDLSGCTVREAPDPDSSKKphCFEIKTSdRKT 79
                           90       100
                   ....*....|....*....|...
gi 37674218    251 RIFQAENAKIKREWLEVLEETKR 273
Cdd:smart00233  80 LLLQAESEEEREKWVEALRKAIA 102
PH1_FGD5_FGD6 cd13389
FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6, N-terminal ...
170-281 3.28e-05

FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6, N-terminal Pleckstrin Homology (PH) domain; FGD5 regulates promotes angiogenesis of vascular endothelial growth factor (VEGF) in vascular endothelial cells, including network formation, permeability, directional movement, and proliferation. The specific function of FGD6 is unknown. In general, FGDs have a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activate the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the PH domain is involved in intracellular targeting of the DH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 275424  Cd Length: 124  Bit Score: 43.80  E-value: 3.28e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674218 170 PGQYLVYNGDLVEYDADHMaqlQRVHGFLMNDCLLVATWLpQRRGMYRYNALYPLDRLAVvNVKDNPPMKDMFKLLMFPE 249
Cdd:cd13389  10 PGRKLIKEGELMKVSRKEM---QPRYFFLFNDCLLYTTPV-QSSGMLKLNNELPLSGMKV-KLPEDEEYSNEFQIISTKR 84
                        90       100       110
                ....*....|....*....|....*....|..
gi 37674218 250 SRIFQAENAKIKREWLEVLEETKRALSDKRRR 281
Cdd:cd13389  85 SFTLIASSEEERDEWVKALSRAIEEHTKKQRT 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH