NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|31324539|ref|NP_852135|]
View 

protein LTV1 homolog [Mus musculus]

Protein Classification

low temperature viability 1 family protein( domain architecture ID 11148151)

low temperature viability 1 (LTV1) family protein similar to Saccharomyces cerevisiae protein LTV1, a non-ribosomal factor required for efficient nuclear export of the ribosomal 40S subunit

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LTV pfam04180
Low temperature viability protein; The low-temperature viability protein LTV1 is involved in ...
 15-358 8.28e-87

Low temperature viability protein; The low-temperature viability protein LTV1 is involved in ribosome biogenesis 40S subunit production.


:

Pssm-ID: 461211  Cd Length: 370  Bit Score: 270.33  E-value: 8.28e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539    15 AVSFHLVHRSQRDPLAADETAPQRVLLPTQKVND----------------------EERRAEQRKYGVFFDD-DYDYLQH 71
Cdd:pfam04180   5 AVTFHLVHRSQNDPLIHDEDAPQHVLVPVSAPNQpkasskksksladleseygdsiRKNEGEAANYGIYFDDsEYDYMQH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539    72 LKEPS--GPAELIPSTSFATPLCDKTEDPcvysstgIKLPSSVFASEFEEDVGL--LNKAAPVS-GPRLDFDP---DIVA 143
Cdd:pfam04180  85 LRPIGtgGDSVFVEAKTPAKGKGKQKKKK-------KLEDALVFPSEFERKVTYqdQQDVPDAIaGFQPDMDPrlrEVLE 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539   144 ALDDDFDFDDPENLLEDDFILQANkptGGERMDTESEEDDGHEWeDMDDEEgSDDRSSAGFLSDGGDLSAPGSPQEA--- 220
Cdd:pfam04180 158 ALEDEAYVDDPENELDDIFAELAK---DGEEVDEDEFEDEDDGW-DSDATE-KDDEQPQKEDPQFDDEEPDEDLENGdwl 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539   221 MKKHLFWEEETKSR----------------------------------FTEYSMTSSVMRRNEQLTLHDERFEKFYEQYD 266
Cdd:pfam04180 233 ADFAKFKKEEKKSRpwddddfdsedqssvattttgggrrkkrkgaltdFSEYSMTSSALARTEGLTLLDDRFEKIEEQYD 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539   267 DVEIGALDNAELEGTIQVDSNRLQEVLNDYykekaencvklstlepfedqdlptneldesekeeTITVVLEEAKEKWDCE 346
Cdd:pfam04180 313 DDEEGALDDEEIEGPFDMDSMVSGMTAMEY----------------------------------SVTVVSVEPPERWDFE 358

                         410
                  ....*....|..
gi 31324539   347 SICSTYSNLYNH 358
Cdd:pfam04180 359 SILDDFLNNYNL 370
 
Name Accession Description Interval E-value
LTV pfam04180
Low temperature viability protein; The low-temperature viability protein LTV1 is involved in ...
 15-358 8.28e-87

Low temperature viability protein; The low-temperature viability protein LTV1 is involved in ribosome biogenesis 40S subunit production.


Pssm-ID: 461211  Cd Length: 370  Bit Score: 270.33  E-value: 8.28e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539    15 AVSFHLVHRSQRDPLAADETAPQRVLLPTQKVND----------------------EERRAEQRKYGVFFDD-DYDYLQH 71
Cdd:pfam04180   5 AVTFHLVHRSQNDPLIHDEDAPQHVLVPVSAPNQpkasskksksladleseygdsiRKNEGEAANYGIYFDDsEYDYMQH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539    72 LKEPS--GPAELIPSTSFATPLCDKTEDPcvysstgIKLPSSVFASEFEEDVGL--LNKAAPVS-GPRLDFDP---DIVA 143
Cdd:pfam04180  85 LRPIGtgGDSVFVEAKTPAKGKGKQKKKK-------KLEDALVFPSEFERKVTYqdQQDVPDAIaGFQPDMDPrlrEVLE 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539   144 ALDDDFDFDDPENLLEDDFILQANkptGGERMDTESEEDDGHEWeDMDDEEgSDDRSSAGFLSDGGDLSAPGSPQEA--- 220
Cdd:pfam04180 158 ALEDEAYVDDPENELDDIFAELAK---DGEEVDEDEFEDEDDGW-DSDATE-KDDEQPQKEDPQFDDEEPDEDLENGdwl 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539   221 MKKHLFWEEETKSR----------------------------------FTEYSMTSSVMRRNEQLTLHDERFEKFYEQYD 266
Cdd:pfam04180 233 ADFAKFKKEEKKSRpwddddfdsedqssvattttgggrrkkrkgaltdFSEYSMTSSALARTEGLTLLDDRFEKIEEQYD 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539   267 DVEIGALDNAELEGTIQVDSNRLQEVLNDYykekaencvklstlepfedqdlptneldesekeeTITVVLEEAKEKWDCE 346
Cdd:pfam04180 313 DDEEGALDDEEIEGPFDMDSMVSGMTAMEY----------------------------------SVTVVSVEPPERWDFE 358

                         410
                  ....*....|..
gi 31324539   347 SICSTYSNLYNH 358
Cdd:pfam04180 359 SILDDFLNNYNL 370
 
Name Accession Description Interval E-value
LTV pfam04180
Low temperature viability protein; The low-temperature viability protein LTV1 is involved in ...
 15-358 8.28e-87

Low temperature viability protein; The low-temperature viability protein LTV1 is involved in ribosome biogenesis 40S subunit production.


Pssm-ID: 461211  Cd Length: 370  Bit Score: 270.33  E-value: 8.28e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539    15 AVSFHLVHRSQRDPLAADETAPQRVLLPTQKVND----------------------EERRAEQRKYGVFFDD-DYDYLQH 71
Cdd:pfam04180   5 AVTFHLVHRSQNDPLIHDEDAPQHVLVPVSAPNQpkasskksksladleseygdsiRKNEGEAANYGIYFDDsEYDYMQH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539    72 LKEPS--GPAELIPSTSFATPLCDKTEDPcvysstgIKLPSSVFASEFEEDVGL--LNKAAPVS-GPRLDFDP---DIVA 143
Cdd:pfam04180  85 LRPIGtgGDSVFVEAKTPAKGKGKQKKKK-------KLEDALVFPSEFERKVTYqdQQDVPDAIaGFQPDMDPrlrEVLE 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539   144 ALDDDFDFDDPENLLEDDFILQANkptGGERMDTESEEDDGHEWeDMDDEEgSDDRSSAGFLSDGGDLSAPGSPQEA--- 220
Cdd:pfam04180 158 ALEDEAYVDDPENELDDIFAELAK---DGEEVDEDEFEDEDDGW-DSDATE-KDDEQPQKEDPQFDDEEPDEDLENGdwl 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539   221 MKKHLFWEEETKSR----------------------------------FTEYSMTSSVMRRNEQLTLHDERFEKFYEQYD 266
Cdd:pfam04180 233 ADFAKFKKEEKKSRpwddddfdsedqssvattttgggrrkkrkgaltdFSEYSMTSSALARTEGLTLLDDRFEKIEEQYD 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31324539   267 DVEIGALDNAELEGTIQVDSNRLQEVLNDYykekaencvklstlepfedqdlptneldesekeeTITVVLEEAKEKWDCE 346
Cdd:pfam04180 313 DDEEGALDDEEIEGPFDMDSMVSGMTAMEY----------------------------------SVTVVSVEPPERWDFE 358

                         410
                  ....*....|..
gi 31324539   347 SICSTYSNLYNH 358
Cdd:pfam04180 359 SILDDFLNNYNL 370
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH