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Conserved domains on  [gi|41281866|ref|NP_778249|]
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high mobility group nucleosome-binding domain-containing protein 3 isoform Hmgn3b [Mus musculus]

Protein Classification

high mobility group family protein( domain architecture ID 10471271)

high mobility group (HMG) family protein similar to human non-histone chromosomal protein HMG-14, also called high mobility group nucleosome-binding domain-containing protein 1, that binds to the inner side of the nucleosomal DNA thus altering the interaction between the DNA and the histone octamer

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HMG14_17 pfam01101
HMG14 and HMG17;
19-77 3.69e-09

HMG14 and HMG17;


:

Pssm-ID: 460064 [Multi-domain]  Cd Length: 90  Bit Score: 48.54  E-value: 3.69e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 41281866   19 TKQEPTRRSARLSAKPVPPKPESKPRKTSAKKEPGTKISRGAKGKKEEKQEAGEEGTEN 77
Cdd:pfam01101 12 VKEEPKRRSARLSAKPAPPKPEPKPKKASSDKKKGTKGKKGAKGKAAAGANQEKKGDNP 70
 
Name Accession Description Interval E-value
HMG14_17 pfam01101
HMG14 and HMG17;
19-77 3.69e-09

HMG14 and HMG17;


Pssm-ID: 460064 [Multi-domain]  Cd Length: 90  Bit Score: 48.54  E-value: 3.69e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 41281866   19 TKQEPTRRSARLSAKPVPPKPESKPRKTSAKKEPGTKISRGAKGKKEEKQEAGEEGTEN 77
Cdd:pfam01101 12 VKEEPKRRSARLSAKPAPPKPEPKPKKASSDKKKGTKGKKGAKGKAAAGANQEKKGDNP 70
HMG17 smart00527
domain in high mobilty group proteins HMG14 and HMG 17;
2-77 3.60e-08

domain in high mobilty group proteins HMG14 and HMG 17;


Pssm-ID: 197773 [Multi-domain]  Cd Length: 88  Bit Score: 45.71  E-value: 3.60e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 41281866     2 PKRKsPENTEGKDgtkltKQEPTRRSARLSAKPVPPKPESKPRKTSAKKEPGTKISRGAKGKK-EEKQEAGEEGTEN 77
Cdd:smart00527  1 PKRK-VAAGEGDD-----KDEPKRRSARLSAKPAPPKPEPKPKKAAAKKKSENVAAKGKKGAKgKQTEEAGKEENNP 71
 
Name Accession Description Interval E-value
HMG14_17 pfam01101
HMG14 and HMG17;
19-77 3.69e-09

HMG14 and HMG17;


Pssm-ID: 460064 [Multi-domain]  Cd Length: 90  Bit Score: 48.54  E-value: 3.69e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 41281866   19 TKQEPTRRSARLSAKPVPPKPESKPRKTSAKKEPGTKISRGAKGKKEEKQEAGEEGTEN 77
Cdd:pfam01101 12 VKEEPKRRSARLSAKPAPPKPEPKPKKASSDKKKGTKGKKGAKGKAAAGANQEKKGDNP 70
HMG17 smart00527
domain in high mobilty group proteins HMG14 and HMG 17;
2-77 3.60e-08

domain in high mobilty group proteins HMG14 and HMG 17;


Pssm-ID: 197773 [Multi-domain]  Cd Length: 88  Bit Score: 45.71  E-value: 3.60e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 41281866     2 PKRKsPENTEGKDgtkltKQEPTRRSARLSAKPVPPKPESKPRKTSAKKEPGTKISRGAKGKK-EEKQEAGEEGTEN 77
Cdd:smart00527  1 PKRK-VAAGEGDD-----KDEPKRRSARLSAKPAPPKPEPKPKKAAAKKKSENVAAKGKKGAKgKQTEEAGKEENNP 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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