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Conserved domains on  [gi|24582924|ref|NP_609250|]
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lysosomal alpha-mannosidase III, isoform A [Drosophila melanogaster]

Protein Classification

glycoside hydrolase family 38 protein( domain architecture ID 11870540)

glycoside hydrolase family 38 (GH38) protein such as lysosomal alpha-mannosidase (LAM or Man2B1), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
GH38N_AMII_LAM_like cd10810
N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside ...
37-311 2.29e-171

N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base.


:

Pssm-ID: 212121 [Multi-domain]  Cd Length: 278  Bit Score: 500.97  E-value: 2.29e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   37 INIHLVPHSHDDLGWLKTVDQYYYGNKHNIQHAGVQYIFDTVVAELSKDSRRRFIQVETGFFAKWWEDQSETKKKLVKTL 116
Cdd:cd10810    1 LNVHLVPHTHDDVGWLKTVDQYYYGSNNSIQHAGVQYILDSVIEELLKNPDRKFIYVEIAFFSRWWREQSEDTRQKVKKL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  117 VNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVCGRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARMD 196
Cdd:cd10810   81 VKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDTFGECARPRVGWQIDPFGHSRTQASLFAQMGFDGLFFGRID 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  197 QNDKNKRVDNLGLEMVWDASETL-EEMDFFTGMLYNHYSAPPGFCFDSLCQDDPIIDG-KSYDNNVKSRVDDFLNYASNL 274
Cdd:cd10810  161 YQDKAQRLKNKEMEFIWRGSPSLgPDADIFTGVLYNHYGPPPGFCFDILCGDEPIQDDpNLEDYNVDERVDDFVQYAKEQ 240
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 24582924  275 AGYYRSNHIMVPMGDDFQYENAYMNYKNMDKLIKYVN 311
Cdd:cd10810  241 AQHYRTNHIMLTMGSDFQYQNAEMWFKNMDKLIKYVN 277
PLN02701 super family cl26659
alpha-mannosidase
20-820 7.30e-104

alpha-mannosidase


The actual alignment was detected with superfamily member PLN02701:

Pssm-ID: 178304 [Multi-domain]  Cd Length: 1050  Bit Score: 349.09  E-value: 7.30e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    20 QSEAVCYEScPETKSNMINIHLVPHSHDDLGWLKTVDQYYygnKHNIQHagvqyIFDTVVAELSKDSRRRFIQVETGFFA 99
Cdd:PLN02701   24 QGWRVKYRG-DEWDREKLKVFVVPHSHNDPGWILTVEEYY---QEQSRH-----ILDTIVESLSKDPRRKFIWEEMSYLE 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   100 KWWEDQSETKKKLVKTLVNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVCgrPRVGWQIDAFGHSREQA 179
Cdd:PLN02701   95 RWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVA--PKNSWAIDPFGYSSTMA 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   180 SMFAQMAFDGQFFARMDQNDKNKRVDNLGLEMV----WDASETleeMDFFTGML-YNHYSAP------PGFCfdslCQ-D 247
Cdd:PLN02701  173 YLLRRMGFENMLIQRTHYEVKKELAQNKNLEYIwrqsWDAEET---TDIFVHMMpFYSYDIPhtcgpePAIC----CQfD 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   248 DPIIDGKSY-------------DNNVKSRVDDFLNYASNLAGYYRSNHIMVPMGDDFQY---ENAYMNYKNMDKLIKYVN 311
Cdd:PLN02701  246 FARMRGFQYelcpwgkhpvetnDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYisiDEAEAQFRNYQKLFDYIN 325
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   312 ERqaSGSKYNIFYSTAGCYLNSLHK----------------SLQSFPNKTQDFLPHSHEAKSFWTGFFTSRPTQKRFERD 375
Cdd:PLN02701  326 SN--PSLKAEVKFGTLEDYFSTLRDeadrinysrpgevgsgEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRV 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   376 GNHILQVAKQLSVL----------ADLSGEEQHKdLDYLRQIMAVMQHHDAITGTEKQEVSNDYDRLLYDAILGGANTAR 445
Cdd:PLN02701  404 LEQTLRAAEILFSFllgycrrfqcEKLPTSFSYK-LTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMS 482
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   446 DALRVLTNQPNGEFQSCLKLNISECAFTKE---------NADDFM---VTLYNPLAHTSTQYVRVPVKEDSYQVTDEKGG 513
Cdd:PLN02701  483 AAVEVLLGIRHEKSDQTPSWFEPEQSRSKYdmlpvhkviNLREGKahrVVFFNPLEQTREEVVMVVVDRPAVCVFDSNWT 562
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   514 LVASELVPvPWEVLSLEFRNNdtQHELVFKASVNKI--ATYFIkkidKTTEVDITVNTQTEQSVNEEESNVKVPKRFKkv 591
Cdd:PLN02701  563 CVPSQISP-EWQHDGEKLFTG--RHRLYWKASVPALglETYFI----ANGNVSCEKAVPAKLKVFNSDDKFPCPEPYS-- 633
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   592 hslktdLETLDDQETIVQNSLIKLVIDNNTGRLKTVEM--NGVSEDIDQTFGMYKTARSCHYIFRQDADLE-LVEDAFDF 668
Cdd:PLN02701  634 ------CSKLEGDTVEISNSHQTLGFDVKTGLLRKIKIhkNGSETVVGEEIGMYSSQGSGAYLFKPDGEAQpIVQAGGLV 707
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   669 TVYDGESVKEVH-QHVNEW----ISQVIRIYEGVNR-----VEFEW---LVGPVpIDDelgKEIVTIFKSGISSGGVFYT 735
Cdd:PLN02701  708 VVSEGPLVQEVHsVPKTKWekspLSRSTRLYHGGKSvqdlsVEKEYhveLLGHD-FND---KELIVRFKTDIDNKRVFYS 783
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   736 DSNGREMMRREK-DKredfspdlseQPVSGNYYPVTSRMALQDS-SKRMVLLNDRSQGGASLEDGRLEMMLHRRHIFADG 813
Cdd:PLN02701  784 DLNGFQMSRRETyDK----------IPLQGNYYPMPSLAFLQGSnGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDG 853

                  ....*..
gi 24582924   814 SGAAEAI 820
Cdd:PLN02701  854 RGLGQGV 860
 
Name Accession Description Interval E-value
GH38N_AMII_LAM_like cd10810
N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside ...
37-311 2.29e-171

N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base.


Pssm-ID: 212121 [Multi-domain]  Cd Length: 278  Bit Score: 500.97  E-value: 2.29e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   37 INIHLVPHSHDDLGWLKTVDQYYYGNKHNIQHAGVQYIFDTVVAELSKDSRRRFIQVETGFFAKWWEDQSETKKKLVKTL 116
Cdd:cd10810    1 LNVHLVPHTHDDVGWLKTVDQYYYGSNNSIQHAGVQYILDSVIEELLKNPDRKFIYVEIAFFSRWWREQSEDTRQKVKKL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  117 VNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVCGRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARMD 196
Cdd:cd10810   81 VKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDTFGECARPRVGWQIDPFGHSRTQASLFAQMGFDGLFFGRID 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  197 QNDKNKRVDNLGLEMVWDASETL-EEMDFFTGMLYNHYSAPPGFCFDSLCQDDPIIDG-KSYDNNVKSRVDDFLNYASNL 274
Cdd:cd10810  161 YQDKAQRLKNKEMEFIWRGSPSLgPDADIFTGVLYNHYGPPPGFCFDILCGDEPIQDDpNLEDYNVDERVDDFVQYAKEQ 240
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 24582924  275 AGYYRSNHIMVPMGDDFQYENAYMNYKNMDKLIKYVN 311
Cdd:cd10810  241 AQHYRTNHIMLTMGSDFQYQNAEMWFKNMDKLIKYVN 277
Glyco_hydro_38N pfam01074
Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of ...
38-352 8.34e-111

Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of carbohydrate metabolism.


Pssm-ID: 426030 [Multi-domain]  Cd Length: 271  Bit Score: 343.46  E-value: 8.34e-111
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924     38 NIHLVPHSHDDLGWLKTVDQYyygnkhniqHAGVQYIFDTVVAELSKDSRRRFIQVETGFFAKWWEDQSETKKKlVKTLV 117
Cdd:pfam01074    1 TVHLVGHSHIDVGWLWTVDET---------RRKVQRTFSSVLALLDRDPDRRFIWSEAQFFAWWWEDQPELFKR-IKKLV 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    118 NEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARMDQ 197
Cdd:pfam01074   71 AEGRLEPVGGGWVEPDENLPSGESLIRQFLYGQRFFKEEFGV--RPRVGWLPDPFGYSATLPQILKQAGIDYFLTQRLHW 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    198 NDKNKRvdNLGLEMVWDASETleeMDFFTGMLYNHYSAPPGFCFdslcqddpiidgksydnnvKSRVDDFLNYASNLAGY 277
Cdd:pfam01074  149 NDKNKF--NPHLEFIWRGSDG---TEIFTHMPPFDYYPTYGFQF-------------------QERAEDLLAYARNYADK 204
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24582924    278 YRSNHIMVPMGDDfqyenaYMNYKNMDKLIKYVNERQASGSKYNIFYSTAGCYLNSLHKslQSFPNKTQDFLPHS 352
Cdd:pfam01074  205 TRTNHVLLPFGDG------DGGGGPTDEMLEYINRWNALPGLPKVQYGTPSDYFDALEK--ATWPTKTDDFPPYA 271
PLN02701 PLN02701
alpha-mannosidase
20-820 7.30e-104

alpha-mannosidase


Pssm-ID: 178304 [Multi-domain]  Cd Length: 1050  Bit Score: 349.09  E-value: 7.30e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    20 QSEAVCYEScPETKSNMINIHLVPHSHDDLGWLKTVDQYYygnKHNIQHagvqyIFDTVVAELSKDSRRRFIQVETGFFA 99
Cdd:PLN02701   24 QGWRVKYRG-DEWDREKLKVFVVPHSHNDPGWILTVEEYY---QEQSRH-----ILDTIVESLSKDPRRKFIWEEMSYLE 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   100 KWWEDQSETKKKLVKTLVNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVCgrPRVGWQIDAFGHSREQA 179
Cdd:PLN02701   95 RWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVA--PKNSWAIDPFGYSSTMA 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   180 SMFAQMAFDGQFFARMDQNDKNKRVDNLGLEMV----WDASETleeMDFFTGML-YNHYSAP------PGFCfdslCQ-D 247
Cdd:PLN02701  173 YLLRRMGFENMLIQRTHYEVKKELAQNKNLEYIwrqsWDAEET---TDIFVHMMpFYSYDIPhtcgpePAIC----CQfD 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   248 DPIIDGKSY-------------DNNVKSRVDDFLNYASNLAGYYRSNHIMVPMGDDFQY---ENAYMNYKNMDKLIKYVN 311
Cdd:PLN02701  246 FARMRGFQYelcpwgkhpvetnDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYisiDEAEAQFRNYQKLFDYIN 325
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   312 ERqaSGSKYNIFYSTAGCYLNSLHK----------------SLQSFPNKTQDFLPHSHEAKSFWTGFFTSRPTQKRFERD 375
Cdd:PLN02701  326 SN--PSLKAEVKFGTLEDYFSTLRDeadrinysrpgevgsgEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRV 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   376 GNHILQVAKQLSVL----------ADLSGEEQHKdLDYLRQIMAVMQHHDAITGTEKQEVSNDYDRLLYDAILGGANTAR 445
Cdd:PLN02701  404 LEQTLRAAEILFSFllgycrrfqcEKLPTSFSYK-LTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMS 482
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   446 DALRVLTNQPNGEFQSCLKLNISECAFTKE---------NADDFM---VTLYNPLAHTSTQYVRVPVKEDSYQVTDEKGG 513
Cdd:PLN02701  483 AAVEVLLGIRHEKSDQTPSWFEPEQSRSKYdmlpvhkviNLREGKahrVVFFNPLEQTREEVVMVVVDRPAVCVFDSNWT 562
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   514 LVASELVPvPWEVLSLEFRNNdtQHELVFKASVNKI--ATYFIkkidKTTEVDITVNTQTEQSVNEEESNVKVPKRFKkv 591
Cdd:PLN02701  563 CVPSQISP-EWQHDGEKLFTG--RHRLYWKASVPALglETYFI----ANGNVSCEKAVPAKLKVFNSDDKFPCPEPYS-- 633
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   592 hslktdLETLDDQETIVQNSLIKLVIDNNTGRLKTVEM--NGVSEDIDQTFGMYKTARSCHYIFRQDADLE-LVEDAFDF 668
Cdd:PLN02701  634 ------CSKLEGDTVEISNSHQTLGFDVKTGLLRKIKIhkNGSETVVGEEIGMYSSQGSGAYLFKPDGEAQpIVQAGGLV 707
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   669 TVYDGESVKEVH-QHVNEW----ISQVIRIYEGVNR-----VEFEW---LVGPVpIDDelgKEIVTIFKSGISSGGVFYT 735
Cdd:PLN02701  708 VVSEGPLVQEVHsVPKTKWekspLSRSTRLYHGGKSvqdlsVEKEYhveLLGHD-FND---KELIVRFKTDIDNKRVFYS 783
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   736 DSNGREMMRREK-DKredfspdlseQPVSGNYYPVTSRMALQDS-SKRMVLLNDRSQGGASLEDGRLEMMLHRRHIFADG 813
Cdd:PLN02701  784 DLNGFQMSRRETyDK----------IPLQGNYYPMPSLAFLQGSnGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDG 853

                  ....*..
gi 24582924   814 SGAAEAI 820
Cdd:PLN02701  854 RGLGQGV 860
Glyco_hydro_38C pfam07748
Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of ...
608-814 1.28e-50

Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of carbohydrate metabolism.


Pssm-ID: 400208 [Multi-domain]  Cd Length: 204  Bit Score: 177.06  E-value: 1.28e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    608 VQNSLIKLVIDNNTGRLKTVEMNGVSE----DIDQTFGMYKTA--RSCHYIFRQD--ADLELVEDAFDFTVYDGESVKEV 679
Cdd:pfam07748    1 LENGFLKVEFDNDTGTLTSIYDKELSRevlaEVGNQFGLYEDIpgYSDAWDFRPFyeAKPLEVDEQSIEVVEDGPLVAEV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    680 HQHVNEW---ISQVIRIYEGVNRVEFEWLVGPVpiddelGKEIVTIFKSGISSGGVFYTDSNGREMMRREKDKREDFSPD 756
Cdd:pfam07748   81 HVKFKIGgseISQVIRLYKGSPRLEFETTVDWH------EREVLLKVAFPIDSQAEFATDENGFGVIKRPTHQNTSWDLA 154
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 24582924    757 LSEQpvsgnyyPVTSRMALQDSSKRMVLLNDRSQGGASLeDGRLEMMLHRRHIFADGS 814
Cdd:pfam07748  155 RFEV-------PIHSWVDLSDSNYGVSLLNDSKYGGSSL-DGQLELSLLRRPLYPDPR 204
Alpha-mann_mid smart00872
Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase ...
358-433 3.21e-27

Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase.


Pssm-ID: 214875 [Multi-domain]  Cd Length: 79  Bit Score: 105.71  E-value: 3.21e-27
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24582924     358 FWTGFFTSRPTQKRFERDGNHILQVAKQLSVLA---DLSGEEQHKDLDYLRQIMAVMQHHDAITGTEKQEVSNDYDRLL 433
Cdd:smart00872    1 YHRGTYTSRPYLKRLNRRAESLLRAAEELAALAallSLGYKYPSEQLEELWKALLLNQHHDAITGTSIDEVYDDYEKRL 79
MngB COG0383
Alpha-mannosidase [Carbohydrate transport and metabolism];
36-520 5.30e-20

Alpha-mannosidase [Carbohydrate transport and metabolism];


Pssm-ID: 440152 [Multi-domain]  Cd Length: 798  Bit Score: 96.07  E-value: 5.30e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   36 MINIHLVPHSHDDLGWLKTVDQyyygnkHNIQhagVQYIFDTVVAELSKDSRRRF----IQVEtgffaKWWEDQSETKKK 111
Cdd:COG0383    5 KKKVHAVGHAHIDRAWLWPVEE------TRRK---LARTFSTVLDLLEEYPEFVFdgstAQLY-----DYLKEHYPELFE 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  112 LVKTLVNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHSreqASM---FAQMAFD 188
Cdd:COG0383   71 RIKKLVKEGRWEPVGGMWVEPDTNLPSGESLVRQLLYGQRFFKEEFGV--DMKVGWLPDSFGYS---AQLpqiLKGAGID 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  189 GQFFARMDQNDKNKRVDNlglEMVW---DASETleemdfFTGMLYNHYSAppgfcfdslcqddpiidGKSydnnvksrVD 265
Cdd:COG0383  146 YFVTQKGSWNDTNRFPYH---TFWWegiDGSEV------LTHFFPNGYNS-----------------GLD--------PE 191
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  266 DFLNYASNLAGYYRSNHIMVP--MGDDFQYENaymnyKNMDKLIKYVNERQASGskyNIFYSTAGCYLNSLHKSLQSFPN 343
Cdd:COG0383  192 ELAGAWRNFEQKAVTDELLLPfgYGDGGGGPT-----REMLERARRLNDLPGLP---EVVISTPEDFFEALEEELPDLPV 263
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  344 ktqdflphsheaksfWTG---------FFTSRPTQKRFERDGNHILQVAKQLSVLADLSGEEQHKD-LDYLRQIMAVMQH 413
Cdd:COG0383  264 ---------------WQGelylelhrgTYTSRADLKRLNRRAERLLREAEPLAALAALLGAEYPQEeLDEAWKLLLLNQF 328
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  414 HDAITGTEKQEVSNDYDRLLYDAILGGANTARDALRVLTNQPNgefqsclklnisecafTKENADDFmvTLYNPLAHTST 493
Cdd:COG0383  329 HDILPGSSIDEVYREAEARYEEALEEAESLIDEALRAIAGAID----------------LPEDGDPL--VVFNTLPWPRS 390
                        490       500
                 ....*....|....*....|....*....
gi 24582924  494 QYVRVPV--KEDSYQVTDEKGGLVASELV 520
Cdd:COG0383  391 EVVELPLytPGKNFQLVDSDGKELPAQIL 419
 
Name Accession Description Interval E-value
GH38N_AMII_LAM_like cd10810
N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside ...
37-311 2.29e-171

N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base.


Pssm-ID: 212121 [Multi-domain]  Cd Length: 278  Bit Score: 500.97  E-value: 2.29e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   37 INIHLVPHSHDDLGWLKTVDQYYYGNKHNIQHAGVQYIFDTVVAELSKDSRRRFIQVETGFFAKWWEDQSETKKKLVKTL 116
Cdd:cd10810    1 LNVHLVPHTHDDVGWLKTVDQYYYGSNNSIQHAGVQYILDSVIEELLKNPDRKFIYVEIAFFSRWWREQSEDTRQKVKKL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  117 VNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVCGRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARMD 196
Cdd:cd10810   81 VKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDTFGECARPRVGWQIDPFGHSRTQASLFAQMGFDGLFFGRID 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  197 QNDKNKRVDNLGLEMVWDASETL-EEMDFFTGMLYNHYSAPPGFCFDSLCQDDPIIDG-KSYDNNVKSRVDDFLNYASNL 274
Cdd:cd10810  161 YQDKAQRLKNKEMEFIWRGSPSLgPDADIFTGVLYNHYGPPPGFCFDILCGDEPIQDDpNLEDYNVDERVDDFVQYAKEQ 240
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 24582924  275 AGYYRSNHIMVPMGDDFQYENAYMNYKNMDKLIKYVN 311
Cdd:cd10810  241 AQHYRTNHIMLTMGSDFQYQNAEMWFKNMDKLIKYVN 277
Glyco_hydro_38N pfam01074
Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of ...
38-352 8.34e-111

Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of carbohydrate metabolism.


Pssm-ID: 426030 [Multi-domain]  Cd Length: 271  Bit Score: 343.46  E-value: 8.34e-111
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924     38 NIHLVPHSHDDLGWLKTVDQYyygnkhniqHAGVQYIFDTVVAELSKDSRRRFIQVETGFFAKWWEDQSETKKKlVKTLV 117
Cdd:pfam01074    1 TVHLVGHSHIDVGWLWTVDET---------RRKVQRTFSSVLALLDRDPDRRFIWSEAQFFAWWWEDQPELFKR-IKKLV 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    118 NEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARMDQ 197
Cdd:pfam01074   71 AEGRLEPVGGGWVEPDENLPSGESLIRQFLYGQRFFKEEFGV--RPRVGWLPDPFGYSATLPQILKQAGIDYFLTQRLHW 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    198 NDKNKRvdNLGLEMVWDASETleeMDFFTGMLYNHYSAPPGFCFdslcqddpiidgksydnnvKSRVDDFLNYASNLAGY 277
Cdd:pfam01074  149 NDKNKF--NPHLEFIWRGSDG---TEIFTHMPPFDYYPTYGFQF-------------------QERAEDLLAYARNYADK 204
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24582924    278 YRSNHIMVPMGDDfqyenaYMNYKNMDKLIKYVNERQASGSKYNIFYSTAGCYLNSLHKslQSFPNKTQDFLPHS 352
Cdd:pfam01074  205 TRTNHVLLPFGDG------DGGGGPTDEMLEYINRWNALPGLPKVQYGTPSDYFDALEK--ATWPTKTDDFPPYA 271
GH38N_AMII_euk cd00451
N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase ...
37-312 2.84e-107

N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38); The family corresponds to a group of eukaryotic class II alpha-mannosidases (AlphaMII), which contain Golgi alpha-mannosidases II (GMII), the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), the noval core-specific lysosomal alpha 1,6-mannosidases (Epman, MAN2B2), and similar proteins. GMII catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2 (GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. LAM is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. Different from LAM, Epman can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212095 [Multi-domain]  Cd Length: 258  Bit Score: 333.81  E-value: 2.84e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   37 INIHLVPHSHDDLGWLKTVDQYYYGNkhniqhagVQYIFDTVVAELSKDSRRRFIQVETGFFAKWWEDQSETKKKLVKTL 116
Cdd:cd00451    1 LNVHLIPHSHCDVGWLKTFDEYYNGD--------VKSILDSVVKALNNDPERKFIWAEIGFLERWWEDQGNDTKQQFKKL 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  117 VNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARMD 196
Cdd:cd00451   73 VKNGQLEFVGGGWVMNDEACTTYESIIDQMTEGHQFLKDTFGV--RPRVGWQIDPFGHSSTTPTLFSKMGFKGLVINRIP 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  197 QNDKNKRVDNLGLEMVWDASETL-EEMDFFTGMLYNHYSAPPGFCFDslcqDDPIidgksYDNNVKSRVDDFLNYASNLA 275
Cdd:cd00451  151 YSLKAEMKDNKQLEFVWRGSPSLgPDSEIFTHVLDDHYSYPESLDFG----GPPI-----TDYNIAERADEFVEYIKKRS 221
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 24582924  276 GYYRSNHIMVPMGDDFQYENAYMNYKNMDKLIKYVNE 312
Cdd:cd00451  222 KTYRTNHILIPLGDDFRFKNASLQFSNMDKLIAYINS 258
PLN02701 PLN02701
alpha-mannosidase
20-820 7.30e-104

alpha-mannosidase


Pssm-ID: 178304 [Multi-domain]  Cd Length: 1050  Bit Score: 349.09  E-value: 7.30e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    20 QSEAVCYEScPETKSNMINIHLVPHSHDDLGWLKTVDQYYygnKHNIQHagvqyIFDTVVAELSKDSRRRFIQVETGFFA 99
Cdd:PLN02701   24 QGWRVKYRG-DEWDREKLKVFVVPHSHNDPGWILTVEEYY---QEQSRH-----ILDTIVESLSKDPRRKFIWEEMSYLE 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   100 KWWEDQSETKKKLVKTLVNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVCgrPRVGWQIDAFGHSREQA 179
Cdd:PLN02701   95 RWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVA--PKNSWAIDPFGYSSTMA 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   180 SMFAQMAFDGQFFARMDQNDKNKRVDNLGLEMV----WDASETleeMDFFTGML-YNHYSAP------PGFCfdslCQ-D 247
Cdd:PLN02701  173 YLLRRMGFENMLIQRTHYEVKKELAQNKNLEYIwrqsWDAEET---TDIFVHMMpFYSYDIPhtcgpePAIC----CQfD 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   248 DPIIDGKSY-------------DNNVKSRVDDFLNYASNLAGYYRSNHIMVPMGDDFQY---ENAYMNYKNMDKLIKYVN 311
Cdd:PLN02701  246 FARMRGFQYelcpwgkhpvetnDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYisiDEAEAQFRNYQKLFDYIN 325
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   312 ERqaSGSKYNIFYSTAGCYLNSLHK----------------SLQSFPNKTQDFLPHSHEAKSFWTGFFTSRPTQKRFERD 375
Cdd:PLN02701  326 SN--PSLKAEVKFGTLEDYFSTLRDeadrinysrpgevgsgEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRV 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   376 GNHILQVAKQLSVL----------ADLSGEEQHKdLDYLRQIMAVMQHHDAITGTEKQEVSNDYDRLLYDAILGGANTAR 445
Cdd:PLN02701  404 LEQTLRAAEILFSFllgycrrfqcEKLPTSFSYK-LTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMS 482
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   446 DALRVLTNQPNGEFQSCLKLNISECAFTKE---------NADDFM---VTLYNPLAHTSTQYVRVPVKEDSYQVTDEKGG 513
Cdd:PLN02701  483 AAVEVLLGIRHEKSDQTPSWFEPEQSRSKYdmlpvhkviNLREGKahrVVFFNPLEQTREEVVMVVVDRPAVCVFDSNWT 562
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   514 LVASELVPvPWEVLSLEFRNNdtQHELVFKASVNKI--ATYFIkkidKTTEVDITVNTQTEQSVNEEESNVKVPKRFKkv 591
Cdd:PLN02701  563 CVPSQISP-EWQHDGEKLFTG--RHRLYWKASVPALglETYFI----ANGNVSCEKAVPAKLKVFNSDDKFPCPEPYS-- 633
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   592 hslktdLETLDDQETIVQNSLIKLVIDNNTGRLKTVEM--NGVSEDIDQTFGMYKTARSCHYIFRQDADLE-LVEDAFDF 668
Cdd:PLN02701  634 ------CSKLEGDTVEISNSHQTLGFDVKTGLLRKIKIhkNGSETVVGEEIGMYSSQGSGAYLFKPDGEAQpIVQAGGLV 707
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   669 TVYDGESVKEVH-QHVNEW----ISQVIRIYEGVNR-----VEFEW---LVGPVpIDDelgKEIVTIFKSGISSGGVFYT 735
Cdd:PLN02701  708 VVSEGPLVQEVHsVPKTKWekspLSRSTRLYHGGKSvqdlsVEKEYhveLLGHD-FND---KELIVRFKTDIDNKRVFYS 783
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   736 DSNGREMMRREK-DKredfspdlseQPVSGNYYPVTSRMALQDS-SKRMVLLNDRSQGGASLEDGRLEMMLHRRHIFADG 813
Cdd:PLN02701  784 DLNGFQMSRRETyDK----------IPLQGNYYPMPSLAFLQGSnGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDG 853

                  ....*..
gi 24582924   814 SGAAEAI 820
Cdd:PLN02701  854 RGLGQGV 860
GH38N_AMII_GMII_SfManIII_like cd10809
N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 ...
38-363 3.20e-68

N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38); This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. This subfamily also includes human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII, and is thought to also function in the N-glycosylation pathway. Also found in this subfamily is class II alpha-mannosidase encoded by Spodoptera frugiperda Sf9 cell. This alpha-mannosidase is an integral membrane glycoprotein localized in the Golgi apparatus. It shows high sequence homology with mammalian Golgi alpha-mannosidase II(GMII). It can hydrolyze p-nitrophenyl alpha-D-mannopyranoside (pNP-alpha-Man), and it is inhibited by swainsonine. However, the Sf9 enzyme is stimulated by cobalt and can hydrolyze (Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it cannot hydrolyze GlcNAc(Man)5(GlcNAc)2, which is distinct from that of GMII. Thus, this enzyme has been designated as Sf9 alpha-mannosidase III (SfManIII). It probably functions in an alternate N-glycan processing pathway in Sf9 cells.


Pssm-ID: 212120 [Multi-domain]  Cd Length: 340  Bit Score: 231.77  E-value: 3.20e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   38 NIHLVPHSHDDLGWLKTVDQYYygnkhniqHAGVQYIFDTVVAELSKDSRRRFIQVETGFFAKWWEDQSETKKKLVKTLV 117
Cdd:cd10809    3 KVFVVPHSHNDPGWIKTFEEYY--------QDQTKHILDNMVDKLSKNPKMKFIWAEISFLERWWDDASPDKKEAVKKLV 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  118 NEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARMDQ 197
Cdd:cd10809   75 KNGQLEIVTGGWVMTDEANSHYFAMIDQLIEGHQWLKENLGV--KPKSGWSIDPFGHSPTMPYLLKRAGFKNMVIQRIHY 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  198 NDKNKRVDNLGLEMVWDAS-ETLEEMDFFTGML-YNHYSAP------PGFCfdslCQDD------------------PII 251
Cdd:cd10809  153 EVKKYLAQRKALEFMWRQYwDATGSTDILTHMMpFYSYDIPhtcgpdPAVC----CQFDfkrlpgggescpwkkppqPIT 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  252 DGksydnNVKSRVDDFLNYASNLAGYYRSNHIMVPMGDDFQY---ENAYMNYKNMDKLIKYVNerqaSGSKYN--IFYST 326
Cdd:cd10809  229 DD-----NVAERAELLLDQYRKKSQLYRSNVVLIPLGDDFRYdsdEEWDAQYDNYQKLFDYIN----SNPELNveIQFGT 299
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 24582924  327 AGCYLNSLHKSLQ----SFPNKTQDFLPHSHEAKSFWTGFF 363
Cdd:cd10809  300 LSDYFNALRKRTGtntpGFPTLSGDFFTYADRDDDYWSGYY 340
GH38N_AMII_like cd10786
N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside ...
38-311 1.02e-56

N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38); Alpha-mannosidases (EC 3.2.1.24) are extensively found in eukaryotes and play important roles in the processing of newly formed N-glycans and in degradation of mature glycoproteins. A deficiency of this enzyme causes the lysosomal storage disease alpha-mannosidosis. Many bacterial and archaeal species also possess putative alpha-mannosidases, but their activity and specificity is largely unknown. Based on different functional characteristics and sequence homology, alpha-mannosidases have been organized into two classes (class I, belonging to glycoside hydrolase family 47, and class II, belonging to glycoside hydrolase family 38). Members of this family corresponds to class II alpha-mannosidases (alphaMII), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212098 [Multi-domain]  Cd Length: 251  Bit Score: 196.47  E-value: 1.02e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   38 NIHLVPHSHDDLGWLKTVDQYYYgnkhniqhAGVQYIFDTVVAELSKDSRRRFIQVETGFFAKWWEDQSETKKKLvKTLV 117
Cdd:cd10786    1 TVHLVPHSHYDVGWLQTFEQYYQ--------INFKAILDKALRLLDANPEYKFLIEEVILLERYWDVRPDLKAKL-KQAV 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  118 NEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARMDQ 197
Cdd:cd10786   72 RSGRLEIAGGGYVMPDTNLPDGESLVRQILLGKRWLKEFLGA--RPPVMWQADVFGHSPQLPQILAKSGFTGFAFGRGPY 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  198 NDKNKRVDNlglEMVWDASETLEemdFFTGMLYNHYSAPPGFCfdslcqdDPIIDGKSYDNNVKSRVDDFLNYASNLAGY 277
Cdd:cd10786  150 SQKRMQRPS---EFLWRGLDGTR---ILTHWMPNGYSDGPFLC-------GPDIPGDNSGPNALASLEALVEQWKKLAEL 216
                        250       260       270
                 ....*....|....*....|....*....|....
gi 24582924  278 YRSNHIMVPMGDDFQYENAYMNYKNMDKLIKYVN 311
Cdd:cd10786  217 GATNHLLMPSGGDFTIPQADPLQVNQARLVEPWN 250
GH38N_Man2A2 cd11667
N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside ...
37-363 1.01e-51

N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38); This subfamily is represented by human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII (found in another subfamily), and as an isoenzyme of GMII. It is thought to also function in the N-glycosylation pathway. MX specifically hydrolyzes the same oligosaccharide substrate as does MII. It specifically removes two mannosyl residues from GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine).


Pssm-ID: 212132 [Multi-domain]  Cd Length: 344  Bit Score: 185.58  E-value: 1.01e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   37 INIHLVPHSHDDLGWLKTVDQYYYGNkhniqhagVQYIFDTVVAELSKDSRRRFIQVETGFFAKWWEDQSETKKKLVKTL 116
Cdd:cd11667    2 LQVFVVPHSHNDPGWIKTFDKYYYDQ--------TQHILNSMVVKLQEDPRRRFIWSEISFFSKWWDNINAQKRAAVRRL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  117 VNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVCgrPRVGWQIDAFGHSREQASMFAQMAFDGQFFARMD 196
Cdd:cd11667   74 VGNGQLEMATGGWVMPDEANSHYFAMIDQLIEGHQWLEKNIGVT--PRSGWAVDPFGHSSTMPYILRRSNLTSMLIQRVH 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  197 QNDKNKRVDNLGLEMVWDAS-ETLEEMDFFTGML-YNHYSAP------PGFCfdslCQDD-------------PIIDGKS 255
Cdd:cd11667  152 YAIKKHFAATQSLEFMWRQTwDPDSSTDIFCHMMpFYSYDVPhtcgpdPKIC----CQFDfkrlpggrincpwKVPPRAI 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  256 YDNNVKSRVDDFLNYASNLAGYYRSNHIMVPMGDDFQYEN------AYMNYKnmdKLIKYVNER-----QASgskynifY 324
Cdd:cd11667  228 TEANVAERAQLLLDQYRKKSKLYRSKVLLVPLGDDFRYDKpqewdaQFLNYQ---RLFDFLNSHpelhvQAQ-------F 297
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 24582924  325 STAGCYLNSLHKSL--------QSFPNKTQDFLPHSHEAKSFWTGFF 363
Cdd:cd11667  298 GTLSDYFDALYKRTgvvpgmrpPGFPVVSGDFFSYADREDHYWTGYY 344
GH38N_AMII_Epman_like cd10811
N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and ...
37-352 2.87e-51

N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily is represented by a novel human core-specific lysosomal alpha 1,6-mannosidase (Epman, Man2B2) and similar proteins. Although it was previously named as epididymal alpha-mannosidase, Epman has a broadly distributed transcript expression profile. Different from the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), Epman is not associated with genetic alpha-mannosidosis that is caused by the absence of LAM. Furthermore, Epman has unique substrate specificity. It can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. In contrast, the major LAM can cleave all of the alpha-linked mannose residues from high mannose oligosaccharides except the core alpha 1,6-linked mannose residue. Moreover, it is suggested that the catalytic activity of Epman is dependent on prior action by di-N-acetyl-chitobiase (chitobiase), which indicates there is a functional cooperation between these two enzymes for the full and efficient catabolism of mammalian lysosomal N-glycan core structures. Epman has an acidic pH optimum. It is strongly stimulated by cobalt or zinc ions and strongly inhibited by furanose analogues swainsonine (SW) and 1,4-dideoxy-1,4-imino-d-mannitol (DIM).


Pssm-ID: 212122 [Multi-domain]  Cd Length: 326  Bit Score: 183.55  E-value: 2.87e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   37 INIHLVPHSHDDLGWLKTVDQYyygnkhniQHAGVQYIFDTVVAELSKDSRRRFIQVETGFFAKWWED-QSETKKKLVKT 115
Cdd:cd10811    1 IQAFVIPHSHMDVGWVYTVQES--------MHAYAANVYTSVVEELMRGKQRRFIAVEQEFFRLWWDGvATDKQKQQVRQ 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  116 LVNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARM 195
Cdd:cd10811   73 LLSEGRLEFVIGGQVMHDEAVTELDDQILQLTEGHGFLYETFGV--RPRFSWHVDPFGASATTPTLFALAGFNAHLISRI 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  196 DQNDKNKRVDNLGLEMVWDASETL-EEMDFFTGML---------YNHYSAPPGFCFDSLCQ-DDPIIDGkSYDNNVKSRV 264
Cdd:cd10811  151 DYDLKAAMQKAKGLQFVWRGSPSLsESQEIFTHVMdqysyctpsYIPFSNRSGFYWNGVAVfPDPPKDG-IYPNMSLPVT 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  265 DDFLN-YASNL-------AGYYRSNHIMVPMGDDFQYENAYMNYKNMDKLIKYVNeRQASGSKYNIFYSTAGCYLNSLHK 336
Cdd:cd10811  230 TQNIHqYAETMvanikqrAAWFRTPHVLWPWGCDKQFFNASVQFSNMDPLLDYIN-QHSSEFGVTVQYATLGDYFQALHN 308
                        330
                 ....*....|....*..
gi 24582924  337 SLQSFPNKT-QDFLPHS 352
Cdd:cd10811  309 SNLTWEVRGsQDFLPYS 325
Glyco_hydro_38C pfam07748
Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of ...
608-814 1.28e-50

Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of carbohydrate metabolism.


Pssm-ID: 400208 [Multi-domain]  Cd Length: 204  Bit Score: 177.06  E-value: 1.28e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    608 VQNSLIKLVIDNNTGRLKTVEMNGVSE----DIDQTFGMYKTA--RSCHYIFRQD--ADLELVEDAFDFTVYDGESVKEV 679
Cdd:pfam07748    1 LENGFLKVEFDNDTGTLTSIYDKELSRevlaEVGNQFGLYEDIpgYSDAWDFRPFyeAKPLEVDEQSIEVVEDGPLVAEV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    680 HQHVNEW---ISQVIRIYEGVNRVEFEWLVGPVpiddelGKEIVTIFKSGISSGGVFYTDSNGREMMRREKDKREDFSPD 756
Cdd:pfam07748   81 HVKFKIGgseISQVIRLYKGSPRLEFETTVDWH------EREVLLKVAFPIDSQAEFATDENGFGVIKRPTHQNTSWDLA 154
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 24582924    757 LSEQpvsgnyyPVTSRMALQDSSKRMVLLNDRSQGGASLeDGRLEMMLHRRHIFADGS 814
Cdd:pfam07748  155 RFEV-------PIHSWVDLSDSNYGVSLLNDSKYGGSSL-DGQLELSLLRRPLYPDPR 204
GH38N_Man2A1 cd11666
N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside ...
37-363 5.73e-50

N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38); This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal of both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212131 [Multi-domain]  Cd Length: 344  Bit Score: 180.54  E-value: 5.73e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   37 INIHLVPHSHDDLGWLKTVDQYYYGNkhniqhagVQYIFDTVVAELSKDSRRRFIQVETGFFAKWWEDQSETKKKLVKTL 116
Cdd:cd11666    2 LQVFVVPHSHNDPGWLKTFDDYFRDQ--------TQHILNNMVLKLKEDSRRKFIWSEISYFAKWWDIIDGQKKDAVKRL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  117 VNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARMD 196
Cdd:cd11666   74 IENGQLEIVTGGWVMPDEATAHYFALIDQLIEGHQWLERNLGV--KPKSGWAVDPFGHSPTMAYLLKRAGLSNMLIQRVH 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  197 QNDKNKRVDNLGLEMVW-------DASETLEEMDFFTGMLYNHYSAP-PGFCfdslCQ-DDPIIDGKSY----------- 256
Cdd:cd11666  152 YSVKKHFSLQKTLEFFWrqnwdlgSSTDILCHMMPFYSYDVPHTCGPdPKIC----CQfDFKRLPGGRIscpwrvppeai 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  257 -DNNVKSRVDDFLNYASNLAGYYRSNHIMVPMGDDFQYENAY---MNYKNMDKLIKYVNERqaSGSKYNIFYSTAGCYLN 332
Cdd:cd11666  228 hPGNVQSRAQMLLDQYRKKSKLFRTKVLLAPLGDDFRYTEYTewdQQFENYQKLFDYMNSH--PELHVKAQFGTLSDYFD 305
                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 24582924  333 SLHKSLQS--------FPNKTQDFLPHSHEAKSFWTGFF 363
Cdd:cd11666  306 ALRKSTGMdpvggqsaFPVLSGDFFTYADRDDHYWSGYF 344
Alpha-mann_mid pfam09261
Alpha mannosidase middle domain; Members of this family adopt a structure consisting of three ...
357-451 1.25e-32

Alpha mannosidase middle domain; Members of this family adopt a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. They are predominantly found in the enzyme alpha-mannosidase.


Pssm-ID: 462728 [Multi-domain]  Cd Length: 98  Bit Score: 121.60  E-value: 1.25e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924    357 SFWTGFFTSRPTQKRFERDGNHILQVAKQLSVLADLS---GEEQHKDLDYLRQIMAVMQHHDAITGTEKQEVSNDYDRLL 433
Cdd:pfam09261    1 EYHRGTYTSRADLKRLNRKLEHLLRAAEQLSSLAALSllgYEYPKEELEELWKALLLNQFHDILPGSSIQEVYRDAEARL 80
                           90
                   ....*....|....*...
gi 24582924    434 YDAILGGANTARDALRVL 451
Cdd:pfam09261   81 AEALKETEKLLEDALRLL 98
Alpha-mann_mid smart00872
Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase ...
358-433 3.21e-27

Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase.


Pssm-ID: 214875 [Multi-domain]  Cd Length: 79  Bit Score: 105.71  E-value: 3.21e-27
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24582924     358 FWTGFFTSRPTQKRFERDGNHILQVAKQLSVLA---DLSGEEQHKDLDYLRQIMAVMQHHDAITGTEKQEVSNDYDRLL 433
Cdd:smart00872    1 YHRGTYTSRPYLKRLNRRAESLLRAAEELAALAallSLGYKYPSEQLEELWKALLLNQHHDAITGTSIDEVYDDYEKRL 79
MngB COG0383
Alpha-mannosidase [Carbohydrate transport and metabolism];
36-520 5.30e-20

Alpha-mannosidase [Carbohydrate transport and metabolism];


Pssm-ID: 440152 [Multi-domain]  Cd Length: 798  Bit Score: 96.07  E-value: 5.30e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   36 MINIHLVPHSHDDLGWLKTVDQyyygnkHNIQhagVQYIFDTVVAELSKDSRRRF----IQVEtgffaKWWEDQSETKKK 111
Cdd:COG0383    5 KKKVHAVGHAHIDRAWLWPVEE------TRRK---LARTFSTVLDLLEEYPEFVFdgstAQLY-----DYLKEHYPELFE 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  112 LVKTLVNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHSreqASM---FAQMAFD 188
Cdd:COG0383   71 RIKKLVKEGRWEPVGGMWVEPDTNLPSGESLVRQLLYGQRFFKEEFGV--DMKVGWLPDSFGYS---AQLpqiLKGAGID 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  189 GQFFARMDQNDKNKRVDNlglEMVW---DASETleemdfFTGMLYNHYSAppgfcfdslcqddpiidGKSydnnvksrVD 265
Cdd:COG0383  146 YFVTQKGSWNDTNRFPYH---TFWWegiDGSEV------LTHFFPNGYNS-----------------GLD--------PE 191
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  266 DFLNYASNLAGYYRSNHIMVP--MGDDFQYENaymnyKNMDKLIKYVNERQASGskyNIFYSTAGCYLNSLHKSLQSFPN 343
Cdd:COG0383  192 ELAGAWRNFEQKAVTDELLLPfgYGDGGGGPT-----REMLERARRLNDLPGLP---EVVISTPEDFFEALEEELPDLPV 263
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  344 ktqdflphsheaksfWTG---------FFTSRPTQKRFERDGNHILQVAKQLSVLADLSGEEQHKD-LDYLRQIMAVMQH 413
Cdd:COG0383  264 ---------------WQGelylelhrgTYTSRADLKRLNRRAERLLREAEPLAALAALLGAEYPQEeLDEAWKLLLLNQF 328
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  414 HDAITGTEKQEVSNDYDRLLYDAILGGANTARDALRVLTNQPNgefqsclklnisecafTKENADDFmvTLYNPLAHTST 493
Cdd:COG0383  329 HDILPGSSIDEVYREAEARYEEALEEAESLIDEALRAIAGAID----------------LPEDGDPL--VVFNTLPWPRS 390
                        490       500
                 ....*....|....*....|....*....
gi 24582924  494 QYVRVPV--KEDSYQVTDEKGGLVASELV 520
Cdd:COG0383  391 EVVELPLytPGKNFQLVDSDGKELPAQIL 419
GH38N_AMII_ER_cytosolic cd10789
N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; ...
39-202 2.29e-11

N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38); The subfamily is represented by Saccharomyces cerevisiae vacuolar alpha-mannosidase Ams1, rat ER/cytosolic alpha-mannosidase Man2C1, and similar proteins. Members in this family share high sequence similarity. None of them have any classical signal sequence or membrane spanning domains, which are typical of sorting or targeting signals. Ams1 functions as a second resident vacuolar hydrolase in S. cerevisiae. It aids in recycling macromolecular components of the cell through hydrolysis of terminal, non-reducing alpha-d-mannose residues. Ams1 utilizes both the cytoplasm to vacuole targeting (Cvt, nutrient-rich conditions) and autophagic (starvation conditions) pathways for biosynthetic delivery to the vacuole. Man2C1is involved in oligosaccharide catabolism in both the ER and cytosol. It can catalyze the cobalt-dependent cleavage of alpha 1,2-, alpha 1,3-, and alpha 1,6-linked mannose residues. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl-enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212101 [Multi-domain]  Cd Length: 252  Bit Score: 65.22  E-value: 2.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   39 IHLVPHSHDDLGWLKTVDQyyygnkhniqhaGVQYI---FDTVVAELSKDSRRRFIQvETGFFAKWWEdqsETKKKL--- 112
Cdd:cd10789    2 IYAVGHAHIDLAWLWPVRE------------TRRKAartFSTVLDLMEEYPDFVFTQ-SQAQLYEWLE---EDYPELfer 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  113 VKTLVNEGRLEFTGGAWsmnDEAAVNY---QSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHSREQASMFAQMAFDG 189
Cdd:cd10789   66 IKERVKEGRWEPVGGMW---VEPDCNLpsgESLVRQFLYGQRYFREEFGV--ESRILWLPDSFGFSAALPQILKKSGIDY 140
                        170
                 ....*....|...
gi 24582924  190 QFFARMDQNDKNK 202
Cdd:cd10789  141 FVTQKLSWNDTNK 153
GH38N_AMII_like_1 cd10791
N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to ...
39-176 6.17e-07

N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38); The subfamily of mainly uncharacterized eukaryotic proteins shows sequence homology with class II alpha-mannosidases (AlphaAMIIs). AlphaAMIIs possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyze the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. This subfamily belongs to the GH38 family of retaining glycosyl hydrolases, which employ a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212103 [Multi-domain]  Cd Length: 254  Bit Score: 51.93  E-value: 6.17e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   39 IHLVPHSHDDLGWLKTVDQYYYGNKHNIQHAgVQYIFDTvvAELSKDSRRRFiQVETGF-FAKWWEDQSETKKKLVKTLV 117
Cdd:cd10791    2 VHVVHHSHTDIGYTDLQEKVDRYHVDYIPQA-LDLAEAT--KNYPEDARFRW-TTESTWlVEEYLKCASPEQRERLEQAV 77
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 24582924  118 NEGRLEFTGGAWSMNDEAAVnyQSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHSR 176
Cdd:cd10791   78 RRGRIGWHALPLNITTELMD--EELLRRGLYLSKELDRRFGL--PIIVAMQTDVPGHTW 132
GH38N_AMII_ScAms1_like cd10812
N-terminal catalytic domain of yeast vacuolar alpha-mannosidases and similar proteins; ...
100-175 1.66e-05

N-terminal catalytic domain of yeast vacuolar alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38); The family is represented by Saccharomyces cerevisiae alpha-mannosidase (Ams1) and its eukaryotic homologs. Ams1 functions as a second resident vacuolar hydrolase in S. cerevisiae. It aids in recycling macromolecular components of the cell through hydrolysis of terminal, non-reducing alpha-d-mannose residues. Ams1 forms an oligomer in the cytoplasm and retains its oligomeric form during the import process. It utilizes both the Cvt (nutrient-rich conditions) and autophagic (starvation conditions) pathways for biosynthetic delivery to the vacuole. Mutants in either pathway are defective in Ams1 import. Members in this family show high sequence similarity with rat ER/cytosolic alpha-mannosidase Man2C1.


Pssm-ID: 212123 [Multi-domain]  Cd Length: 258  Bit Score: 47.43  E-value: 1.66e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24582924  100 KWWEDQSETKKKLVKTLVNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVcgRPRVGWQIDAFGHS 175
Cdd:cd10812   53 KWLETLYPDLFEKVKEYVKQGRFHPIGGSWVENDTNMPSGESLARQFLYGQRYFESRFGK--RCDTFWLPDTFGYS 126
GH38-57_N_LamB_YdjC_SF cd10785
Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein ...
41-180 3.32e-05

Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins; The superfamily possesses strong sequence similarities across a wide range of all three kingdoms of life. It mainly includes four families, glycoside hydrolases family 38 (GH38), heat stable retaining glycoside hydrolases family 57 (GH57), lactam utilization protein LamB/YcsF family, and YdjC-family. The GH38 family corresponds to class II alpha-mannosidases (alphaMII, EC 3.2.1.24), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides by employing a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. GH57 is a purely prokaryotic family with the majority of thermostable enzymes from extremophiles (many of them are archaeal hyperthermophiles), which exhibit the enzyme specificities of alpha-amylase (EC 3.2.1.1), 4-alpha-glucanotransferase (EC 2.4.1.25), amylopullulanase (EC 3.2.1.1/41), and alpha-galactosidase (EC 3.2.1.22). This family also includes many hypothetical proteins with uncharacterized activity and specificity. GH57 cleaves alpha-glycosidic bond by employing a retaining mechanism, which involves a glycosyl-enzyme intermediate, allowing transglycosylation. Although the exact molecular function of LamB/YcsF family and YdjC-family remains unclear, they show high sequence and structure homology to the members of GH38 and GH57. Their catalytic domains adopt a similar parallel 7-stranded beta/alpha barrel, which is remotely related to catalytic NodB homology domain of the carbohydrate esterase 4 superfamily.


Pssm-ID: 212097 [Multi-domain]  Cd Length: 203  Bit Score: 46.10  E-value: 3.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   41 LVPHSHDDLGWLKTVDQYYYgnkHNIQHagvqyIFDTVVAELSKDSRRRFIQVETGFFAKWWEDQSETKKKLVKTLVNEG 120
Cdd:cd10785    2 INAHSHNPYVWIQTFEEWYF---EATKA-----TYIPLLMHFHRNFEMSFNIAPISYEALFYHDLGENIKLQMKSIQKNG 73
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24582924  121 RLEFTGGAWSMND--EAAVNYQSVIDQFAVGLKFLNDNFGvcGRPRVGWQIDAFGHSREQAS 180
Cdd:cd10785   74 QLEIGTHGATHPDesEAQSHPENVYAQITEGITWLEKHMG--VTPRHIWLHECFYNQAKQLS 133
GH38N_AMII_1 cd10790
N-terminal catalytic domain of putative prokaryotic class II alpha-mannosidases; glycoside ...
39-292 2.81e-03

N-terminal catalytic domain of putative prokaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38); This mainly bacterial subfamily corresponds to a group of putative class II alpha-mannosidases, including various proteins assigned as alpha-mannosidases, Streptococcus pyogenes (SpGH38) encoded by ORF spy1604. Escherichia coli MngB encoded by the mngB/ybgG gene, and Thermotoga maritime TMM, and similar proteins. SpGH38 targets alpha-1,3 mannosidic linkages. SpGH38 appears to exist as an elongated dimer and display alpha-1,3 mannosidase activity. It is active on disaccharides and some aryl glycosides. SpGH38 can also effectively deglycosylate human N-glycans in vitro. MngB exhibits alpha-mannosidase activity that catalyzes the conversion of 2-O-(6-phospho-alpha-mannosyl)-D-glycerate to mannose-6-phosphate and glycerate in the pathway which enables use of mannosyl-D-glycerate as a sole carbon source. TMM is a homodimeric enzyme that hydrolyzes p-nitrophenyl-alpha-D-mannopyranoside, alpha -1,2-mannobiose, alpha -1,3-mannobiose, alpha -1,4-mannobiose, and alpha -1,6-mannobiose. The GH38 family contains retaining glycosyl hydrolases that employ a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Divalent metal ions, such as zinc or cobalt ions, are suggested to be required for the catalytic activities of typical class II alpha-mannosidases. However, TMM requires the cobalt or cadmium for its activity. The cadmium ion dependency is unique to TMM. Moreover, TMM is inhibited by swainsonine but not 1-deoxymannojirimycin, which is in agreement with the features of cytosolic alpha-mannosidase.


Pssm-ID: 212102 [Multi-domain]  Cd Length: 273  Bit Score: 40.91  E-value: 2.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924   39 IHLVPHSHDDLGWLKTVDQyyygnkhniQHAGVQYIFDTVVAELSKDSRRRFI-QVETGFFAKWWEDQSETKKKLVKtLV 117
Cdd:cd10790    2 VHIISHTHWDREWFATTEQ---------THKWLINLFERLLELIQKDPEYSFVlDGQTAILEDYLKVFPEREKKLRQ-AI 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  118 NEGRLEFtGGAWSMNDEAAVNYQSVIDQFAVGLKFLnDNFGvcGRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARmdq 197
Cdd:cd10790   72 KSGKLII-GPYYIQIDWRITSEESIVRNFEIGKKDC-DRFG--ASMKIGWLPDSFGFISQLPQLMRKFGIEAVFLWR--- 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582924  198 nDKNKRVDNLGLEMVW---DASETLEEmdFFTGMLYNHYSAPpgfcfdslcqddpiidgkSYDNNVKSRVDDFLNyasNL 274
Cdd:cd10790  145 -GISPEGSSPKIEFSWqspDGSRVLGV--FLAGGYRNGYELP------------------TTEDIARKRLDHEIA---KL 200
                        250
                 ....*....|....*...
gi 24582924  275 AGYYRSNHIMVPMGDDFQ 292
Cdd:cd10790  201 EKFSSTKEILLLNGYDLD 218
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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