|
Name |
Accession |
Description |
Interval |
E-value |
| vWFA super family |
cl00057 |
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ... |
38-455 |
0e+00 |
|
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. The actual alignment was detected with superfamily member smart00187:
Pssm-ID: 469594 [Multi-domain] Cd Length: 423 Bit Score: 558.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 38 SCTECIRVDKSCAYCTDELFKER---RCNTQAELLAAGCRGESILVMESSLEITENTQID---TSLHRSQVSPQGLQVRL 111
Cdd:smart00187 1 SCEECIQSGPNCAWCTDENFTSGgsaRCDTRANLLAKGCSPESIENPASSAEVLEDKPLSdkgSGGQAVQVSPQRVRLKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 112 RPGEERSFVFQVFEPLESPVDLYILMDFSNSMSDDLDNLKQMGQNLAKILRQLTSDYTIGFGKFVDKVSVPQTDMRPEKL 191
Cdd:smart00187 81 RPGEPQNFTLTVRQAEDYPVDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTHPEKL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 192 KEPWPN----SDPPFSFKNVISLTENVEEFWNKLQGERISGNLDAPEGGFDAILQTAVCTRDIGWRADSTHLLVFSTESA 267
Cdd:smart00187 161 ENPCPNynktCEPPYGFKHVLSLTDDTDEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 268 FHYEADGAnvLAGIMNRNDEKCHLDASGAYTQYKTQDYPSVPTLVRLLAKHNIIPIFAVTNYSYSYYEKLHKYFPVSSLG 347
Cdd:smart00187 241 FHFAGDGK--LGGIVTPNDGQCHLDNNGEYTMSTTQDYPSIGQLAQKLAENNINPIFAVTKKQVSLYKELSALIPGSSVG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 348 VLQEDSSNIVELLEEAFYRIRSNLDIRALDSPRGLRTEVTSdTLQKTETGSFHikRGEVGTYNVHLRAVEDIDGTHVCQl 427
Cdd:smart00187 319 ELSEDSSNVVELIKDAYNKISSRVELEDNALPEGVSVTYTS-SCPGGVTGPGT--RKCEGVKIGDTVSFEVTVTATKCP- 394
|
410 420
....*....|....*....|....*....
gi 110735428 428 aKEDQGGNIHLKP-SFSDGLRMDASVICD 455
Cdd:smart00187 395 -PEDQEQSIRIRPvGFSETLEVEVTFLCD 422
|
|
| Calx_beta |
smart00237 |
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ... |
991-1085 |
2.72e-27 |
|
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins) :
Pssm-ID: 197594 [Multi-domain] Cd Length: 90 Bit Score: 106.96 E-value: 2.72e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 991 GVVSFEQPEYSVSRGDQVARIPVIRHILDNGKSQVSYSTQDNTAHGHRDYVPVEGELLFHPGETWKELQVKLLelqeVDS 1070
Cdd:smart00237 2 GSVGFEQPVYTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKII----DDD 77
|
90
....*....|....*
gi 110735428 1071 LLRGrqVRRFQVQLS 1085
Cdd:smart00237 78 IYEK--DETFYVRLS 90
|
|
| Integrin_B_tail |
pfam07965 |
Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are ... |
628-710 |
3.07e-24 |
|
Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are receptors which are involved in cell-cell and cell-extracellular matrix interactions. :
Pssm-ID: 462325 Cd Length: 84 Bit Score: 98.12 E-value: 3.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 628 CEDLRSCVQCQAWGTGEKKGRACD-DCPFKVKMVDELK--KEEVVEYCSFRDEdDDCTYSYNVEGDgsPGPNSTVLVHKK 704
Cdd:pfam07965 1 CEEKKSCVECQAFKTGPLKEKNCSrNCKFEIILVEVLKedEEPGAVLCSFKDE-DDCWFTFTYYED--ESGKYVVHVQKE 77
|
....*.
gi 110735428 705 KDCPPG 710
Cdd:pfam07965 78 RECPPG 83
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1572-1657 |
9.39e-22 |
|
Fibronectin type III domain; :
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 90.94 E-value: 9.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1572 SAPGPLVFTALSPDSLQLSWERPRRPNGDILGYLVTCEMAQGGAPARTFRVDGDnpESRLTVPGLSENVPYKFKVQARTT 1651
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPPDGNGPITGYEVEYRPKNSGEPWNEITVPGT--TTSVTLTGLKPGTEYEVRVQAVNG 78
|
....*.
gi 110735428 1652 EGFGPE 1657
Cdd:pfam00041 79 GGEGPP 84
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1458-1539 |
7.83e-19 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. :
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 82.93 E-value: 7.83e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1458 PDTPTRLVFSALGPTSLKVSWQEPQCD-RMLLGYSVEYQLLNGGEMHRLNIPNPGQTSVVVEDLLPNHSYVFRVRAQSQE 1536
Cdd:cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDgGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80
|
...
gi 110735428 1537 GWG 1539
Cdd:cd00063 81 GES 83
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1129-1209 |
5.38e-16 |
|
Fibronectin type III domain; :
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 74.76 E-value: 5.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1129 GAPQNPNAKAAGSRKIHFNWLPPP---GKPMGYRVKYWIQGDSESEAHLLDSKVP-SVELTNLYPYCDYEMKVCAYGAQG 1204
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPPdgnGPITGYEVEYRPKNSGEPWNEITVPGTTtSVTLTGLKPGTEYEVRVQAVNGGG 80
|
....*
gi 110735428 1205 EGPYS 1209
Cdd:pfam00041 81 EGPPS 85
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1221-1314 |
2.44e-14 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. :
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 70.22 E-value: 2.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1221 PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNEDNrpigpMKKVLVDNPKNRMLLIENLRESQPYRYTVK 1300
Cdd:cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGD-----WKEVEVTPGSETSYTLTGLKPGTEYEFRVR 75
|
90
....*....|....
gi 110735428 1301 ARNGAGWGPEREAI 1314
Cdd:cd00063 76 AVNGGGESPPSESV 89
|
|
| I-EGF_1 |
pfam18372 |
Integrin beta epidermal growth factor like domain 1; This is the I-EGF 1 domain found in ... |
459-487 |
1.26e-09 |
|
Integrin beta epidermal growth factor like domain 1; This is the I-EGF 1 domain found in several integrin betas such as integrin beta 1-7. Structural analysis reveal an epidermal growth factor-like (I-EGF) domains 1 and 2. EGF1 lacks one disulfide (C2-C4) relative to the integrin EGF 2, 3, and 4 domains, this allows the C-terminal end of EGF1 to flex remarkably relative to its N-terminal end. :
Pssm-ID: 465729 Cd Length: 29 Bit Score: 54.80 E-value: 1.26e-09
10 20
....*....|....*....|....*....
gi 110735428 459 CELQKEVRSARCHFRGDFMCGHCVCNEGW 487
Cdd:pfam18372 1 CEKQAEPNSPRCSGNGTFVCGVCVCNPGY 29
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| INB |
smart00187 |
Integrin beta subunits (N-terminal portion of extracellular region); Portion of beta integrins ... |
38-455 |
0e+00 |
|
Integrin beta subunits (N-terminal portion of extracellular region); Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Pssm-ID: 197563 [Multi-domain] Cd Length: 423 Bit Score: 558.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 38 SCTECIRVDKSCAYCTDELFKER---RCNTQAELLAAGCRGESILVMESSLEITENTQID---TSLHRSQVSPQGLQVRL 111
Cdd:smart00187 1 SCEECIQSGPNCAWCTDENFTSGgsaRCDTRANLLAKGCSPESIENPASSAEVLEDKPLSdkgSGGQAVQVSPQRVRLKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 112 RPGEERSFVFQVFEPLESPVDLYILMDFSNSMSDDLDNLKQMGQNLAKILRQLTSDYTIGFGKFVDKVSVPQTDMRPEKL 191
Cdd:smart00187 81 RPGEPQNFTLTVRQAEDYPVDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTHPEKL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 192 KEPWPN----SDPPFSFKNVISLTENVEEFWNKLQGERISGNLDAPEGGFDAILQTAVCTRDIGWRADSTHLLVFSTESA 267
Cdd:smart00187 161 ENPCPNynktCEPPYGFKHVLSLTDDTDEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 268 FHYEADGAnvLAGIMNRNDEKCHLDASGAYTQYKTQDYPSVPTLVRLLAKHNIIPIFAVTNYSYSYYEKLHKYFPVSSLG 347
Cdd:smart00187 241 FHFAGDGK--LGGIVTPNDGQCHLDNNGEYTMSTTQDYPSIGQLAQKLAENNINPIFAVTKKQVSLYKELSALIPGSSVG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 348 VLQEDSSNIVELLEEAFYRIRSNLDIRALDSPRGLRTEVTSdTLQKTETGSFHikRGEVGTYNVHLRAVEDIDGTHVCQl 427
Cdd:smart00187 319 ELSEDSSNVVELIKDAYNKISSRVELEDNALPEGVSVTYTS-SCPGGVTGPGT--RKCEGVKIGDTVSFEVTVTATKCP- 394
|
410 420
....*....|....*....|....*....
gi 110735428 428 aKEDQGGNIHLKP-SFSDGLRMDASVICD 455
Cdd:smart00187 395 -PEDQEQSIRIRPvGFSETLEVEVTFLCD 422
|
|
| Integrin_beta |
pfam00362 |
Integrin beta chain VWA domain; Integrins have been found in animals and their homologs have ... |
126-371 |
4.01e-147 |
|
Integrin beta chain VWA domain; Integrins have been found in animals and their homologs have also been found in cyanobacteria, probably due to horizontal gene transfer. This domain corresponds to the integrin beta VWA domain.
Pssm-ID: 459781 Cd Length: 248 Bit Score: 452.34 E-value: 4.01e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 126 PLESPVDLYILMDFSNSMSDDLDNLKQMGQNLAKILRQLTSDYTIGFGKFVDKVSVPQTDMRPEKLKEPWPNS----DPP 201
Cdd:pfam00362 1 AEDYPVDLYYLMDLSYSMKDDLDNLKKLGNDLAEEMRNITSNFRLGFGSFVDKPVMPYISTRPEKLKNPCPGEneqcDPP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 202 FSFKNVISLTENVEEFWNKLQGERISGNLDAPEGGFDAILQTAVCTRDIGWRADSTHLLVFSTESAFHYEADGAnvLAGI 281
Cdd:pfam00362 81 FGFRHVLSLTNDIEEFTEEVQKQRISGNLDAPEGGFDAIMQAAVCKDQIGWRNEARRLLVFSTDAGFHYAGDGK--LAGI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 282 MNRNDEKCHLDASGAYTQYKTQDYPSVPTLVRLLAKHNIIPIFAVTNYSYSYYEKLHKYFPVSSLGVLQEDSSNIVELLE 361
Cdd:pfam00362 159 VTPNDGQCHLDSNGEYTKSTEQDYPSLGQLVRKLSENNINPIFAVTEEQYSLYEKLSKLIPGSSVGVLSEDSSNIVQLIK 238
|
250
....*....|
gi 110735428 362 EAFYRIRSNL 371
Cdd:pfam00362 239 EAYEKIRSKV 248
|
|
| Calx_beta |
smart00237 |
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ... |
991-1085 |
2.72e-27 |
|
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Pssm-ID: 197594 [Multi-domain] Cd Length: 90 Bit Score: 106.96 E-value: 2.72e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 991 GVVSFEQPEYSVSRGDQVARIPVIRHILDNGKSQVSYSTQDNTAHGHRDYVPVEGELLFHPGETWKELQVKLLelqeVDS 1070
Cdd:smart00237 2 GSVGFEQPVYTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKII----DDD 77
|
90
....*....|....*
gi 110735428 1071 LLRGrqVRRFQVQLS 1085
Cdd:smart00237 78 IYEK--DETFYVRLS 90
|
|
| Integrin_B_tail |
pfam07965 |
Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are ... |
628-710 |
3.07e-24 |
|
Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are receptors which are involved in cell-cell and cell-extracellular matrix interactions.
Pssm-ID: 462325 Cd Length: 84 Bit Score: 98.12 E-value: 3.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 628 CEDLRSCVQCQAWGTGEKKGRACD-DCPFKVKMVDELK--KEEVVEYCSFRDEdDDCTYSYNVEGDgsPGPNSTVLVHKK 704
Cdd:pfam07965 1 CEEKKSCVECQAFKTGPLKEKNCSrNCKFEIILVEVLKedEEPGAVLCSFKDE-DDCWFTFTYYED--ESGKYVVHVQKE 77
|
....*.
gi 110735428 705 KDCPPG 710
Cdd:pfam07965 78 RECPPG 83
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1572-1657 |
9.39e-22 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 90.94 E-value: 9.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1572 SAPGPLVFTALSPDSLQLSWERPRRPNGDILGYLVTCEMAQGGAPARTFRVDGDnpESRLTVPGLSENVPYKFKVQARTT 1651
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPPDGNGPITGYEVEYRPKNSGEPWNEITVPGT--TTSVTLTGLKPGTEYEVRVQAVNG 78
|
....*.
gi 110735428 1652 EGFGPE 1657
Cdd:pfam00041 79 GGEGPP 84
|
|
| Calx-beta |
pfam03160 |
Calx-beta domain; |
991-1085 |
4.28e-21 |
|
Calx-beta domain;
Pssm-ID: 397326 [Multi-domain] Cd Length: 91 Bit Score: 89.23 E-value: 4.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 991 GVVSFEQPEYSVSRGDQVARIPVIRHILD-NGKSQVSYSTQDNTAHGHRDYVPVEGELLFHPGETWKELQVKLLElqevD 1069
Cdd:pfam03160 2 GVIGFEPPTYQVSENDGVAEVCVVRMSGTlRRTVVVPYRTEDGTATAGDDYEPVEGELVFGPGETEKCINVTIID----D 77
|
90
....*....|....*.
gi 110735428 1070 SLLRGRqvRRFQVQLS 1085
Cdd:pfam03160 78 DVYEGD--ENFFVLLS 91
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1458-1539 |
7.83e-19 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 82.93 E-value: 7.83e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1458 PDTPTRLVFSALGPTSLKVSWQEPQCD-RMLLGYSVEYQLLNGGEMHRLNIPNPGQTSVVVEDLLPNHSYVFRVRAQSQE 1536
Cdd:cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDgGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80
|
...
gi 110735428 1537 GWG 1539
Cdd:cd00063 81 GES 83
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1459-1541 |
2.64e-18 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 81.31 E-value: 2.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1459 DTPTRLVFSALGPTSLKVSWQEP-QCDRMLLGYSVEYQLLNGGEM-HRLNIPNPgQTSVVVEDLLPNHSYVFRVRAQSQE 1536
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPpDGNGPITGYEVEYRPKNSGEPwNEITVPGT-TTSVTLTGLKPGTEYEVRVQAVNGG 79
|
....*
gi 110735428 1537 GWGRE 1541
Cdd:pfam00041 80 GEGPP 84
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1571-1656 |
1.88e-16 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 76.00 E-value: 1.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1571 PSAPGPLVFTALSPDSLQLSWERPRRPNGDILGYLVTCEMAQGGAPARTFRVDGDnpESRLTVPGLSENVPYKFKVQART 1650
Cdd:cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGS--ETSYTLTGLKPGTEYEFRVRAVN 78
|
....*.
gi 110735428 1651 TEGFGP 1656
Cdd:cd00063 79 GGGESP 84
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1129-1209 |
5.38e-16 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 74.76 E-value: 5.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1129 GAPQNPNAKAAGSRKIHFNWLPPP---GKPMGYRVKYWIQGDSESEAHLLDSKVP-SVELTNLYPYCDYEMKVCAYGAQG 1204
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPPdgnGPITGYEVEYRPKNSGEPWNEITVPGTTtSVTLTGLKPGTEYEVRVQAVNGGG 80
|
....*
gi 110735428 1205 EGPYS 1209
Cdd:pfam00041 81 EGPPS 85
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1458-1539 |
2.96e-15 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 72.26 E-value: 2.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1458 PDTPTRLVFSALGPTSLKVSWQEPQCDRmLLGYSVEYQLLNGGEMHRLN--IPNPGQTSVVVEDLLPNHSYVFRVRAQSQ 1535
Cdd:smart00060 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDG-ITGYIVGYRVEYREEGSEWKevNVTPSSTSYTLTGLKPGTEYEFRVRAVNG 79
|
....
gi 110735428 1536 EGWG 1539
Cdd:smart00060 80 AGEG 83
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1571-1655 |
4.16e-15 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 71.88 E-value: 4.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1571 PSAPGPLVFTALSPDSLQLSWERPRRPNGDilGYLVTCEMAQGGAPARTFRVDGDNPESRLTVPGLSENVPYKFKVQART 1650
Cdd:smart00060 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGIT--GYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVN 78
|
....*
gi 110735428 1651 TEGFG 1655
Cdd:smart00060 79 GAGEG 83
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1221-1314 |
2.44e-14 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 70.22 E-value: 2.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1221 PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNEDNrpigpMKKVLVDNPKNRMLLIENLRESQPYRYTVK 1300
Cdd:cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGD-----WKEVEVTPGSETSYTLTGLKPGTEYEFRVR 75
|
90
....*....|....
gi 110735428 1301 ARNGAGWGPEREAI 1314
Cdd:cd00063 76 AVNGGGESPPSESV 89
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1222-1310 |
3.45e-14 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 69.37 E-value: 3.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1222 SEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNEdnrpIGPMKKVLVDNPKNRMLLiENLRESQPYRYTVKA 1301
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPPDGNGPITGYEVEYRPKNS----GEPWNEITVPGTTTSVTL-TGLKPGTEYEVRVQA 75
|
....*....
gi 110735428 1302 RNGAGWGPE 1310
Cdd:pfam00041 76 VNGGGEGPP 84
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1129-1216 |
1.16e-13 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 68.29 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1129 GAPQNPNAKAAGSRKIHFNWLPPP---GKPMGYRVKYWIQGDSE-SEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG 1204
Cdd:cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEddgGPITGYVVEYREKGSGDwKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG 81
|
90
....*....|..
gi 110735428 1205 EGPYSSLVSCRT 1216
Cdd:cd00063 82 ESPPSESVTVTT 93
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1457-1676 |
2.55e-12 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 71.96 E-value: 2.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1457 VPDTPTRLVFSALGPTSLKVSWQEPQCDRmLLGYSVEYQLLNGGEMHRlnIPNPGQTSVVVEDLLPNHSYVFRVRAQSQE 1536
Cdd:COG3401 232 PPSAPTGLTATADTPGSVTLSWDPVTESD-ATGYRVYRSNSGDGPFTK--VATVTTTSYTDTGLTNGTTYYYRVTAVDAA 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1537 GwgreregvitIESqvhPQSPlcplPGSAFT-LSTPSAPGPLVFTALSPDSLQLSWERPrrPNGDILGYLVTcemaQGGA 1615
Cdd:COG3401 309 G----------NES---APSN----VVSVTTdLTPPAAPSGLTATAVGSSSITLSWTAS--SDADVTGYNVY----RSTS 365
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110735428 1616 PARTFR-VDGDNPESRLTVPGLSENVPYKFKVQARTTEGFGPEREGIITIESQVGGPFPQLG 1676
Cdd:COG3401 366 GGGTYTkIAETVTTTSYTDTGLTPGTTYYYKVTAVDAAGNESAPSEEVSATTASAASGESLT 427
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1129-1206 |
9.15e-10 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 56.85 E-value: 9.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1129 GAPQNPNAKAAGSRKIHFNWLPPPGK-PMGYRVKYWIQGDSESEA---HLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG 1204
Cdd:smart00060 2 SPPSNLRVTDVTSTSVTLSWEPPPDDgITGYIVGYRVEYREEGSEwkeVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81
|
..
gi 110735428 1205 EG 1206
Cdd:smart00060 82 EG 83
|
|
| I-EGF_1 |
pfam18372 |
Integrin beta epidermal growth factor like domain 1; This is the I-EGF 1 domain found in ... |
459-487 |
1.26e-09 |
|
Integrin beta epidermal growth factor like domain 1; This is the I-EGF 1 domain found in several integrin betas such as integrin beta 1-7. Structural analysis reveal an epidermal growth factor-like (I-EGF) domains 1 and 2. EGF1 lacks one disulfide (C2-C4) relative to the integrin EGF 2, 3, and 4 domains, this allows the C-terminal end of EGF1 to flex remarkably relative to its N-terminal end.
Pssm-ID: 465729 Cd Length: 29 Bit Score: 54.80 E-value: 1.26e-09
10 20
....*....|....*....|....*....
gi 110735428 459 CELQKEVRSARCHFRGDFMCGHCVCNEGW 487
Cdd:pfam18372 1 CEKQAEPNSPRCSGNGTFVCGVCVCNPGY 29
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1221-1308 |
2.14e-09 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 55.70 E-value: 2.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1221 PSEPGRLAFNVVSSTVTQLSWAEPAETNGeiTAYEVCYGLVNednRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVK 1300
Cdd:smart00060 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEY---REEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVR 75
|
....*...
gi 110735428 1301 ARNGAGWG 1308
Cdd:smart00060 76 AVNGAGEG 83
|
|
| caca |
TIGR00845 |
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ... |
993-1107 |
7.80e-08 |
|
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]
Pssm-ID: 273296 [Multi-domain] Cd Length: 928 Bit Score: 57.49 E-value: 7.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 993 VSFEQPEYSVSRGDQVARIPVIRHILDNGKS-QVSYSTQDNTAHGHRDYVPVEGELLFHPGETWKELQVKLL--ELQEVD 1069
Cdd:TIGR00845 402 IFFEPGHYTCLENCGTVALTVVRRGGDLTNTvYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIddDIFEED 481
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 110735428 1070 sllrgrqvRRFQVQLSNPKFG--------------ARLGQPSTTTVILGEHD 1107
Cdd:TIGR00845 482 --------EHFYVRLSNLRVGsedgileanhvsavAQLASPNTATVTILDDD 525
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1509-1653 |
1.79e-07 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 56.16 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1509 NPGQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVitiesqvhpqsplcplpgSAFTLST-PSAPGPLVFTALSPDSL 1587
Cdd:COG3401 188 TSTTLVDGGGDIEPGTTYYYRVAATDTGGESAPSNEV------------------SVTTPTTpPSAPTGLTATADTPGSV 249
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 110735428 1588 QLSWERPrrPNGDILGYLVtcemAQGGAPARTFRVDGDNPESRLTVPGLSENVPYKFKVQARTTEG 1653
Cdd:COG3401 250 TLSWDPV--TESDATGYRV----YRSNSGDGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAG 309
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1147-1306 |
2.65e-06 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 52.31 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1147 NWLPPPGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGR 1226
Cdd:COG3401 159 TASSVAGAGVVVSPDTSATAAVATTSLTVTSTTLVDGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTG 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1227 LAFNVVSSTVTQLSWAEPAETNgeITAYEVCYGlvnedNRPIGPMKKvlVDNPKNRMLLIENLRESQPYRYTVKARNGAG 1306
Cdd:COG3401 239 LTATADTPGSVTLSWDPVTESD--ATGYRVYRS-----NSGDGPFTK--VATVTTTSYTDTGLTNGTTYYYRVTAVDAAG 309
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| INB |
smart00187 |
Integrin beta subunits (N-terminal portion of extracellular region); Portion of beta integrins ... |
38-455 |
0e+00 |
|
Integrin beta subunits (N-terminal portion of extracellular region); Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Pssm-ID: 197563 [Multi-domain] Cd Length: 423 Bit Score: 558.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 38 SCTECIRVDKSCAYCTDELFKER---RCNTQAELLAAGCRGESILVMESSLEITENTQID---TSLHRSQVSPQGLQVRL 111
Cdd:smart00187 1 SCEECIQSGPNCAWCTDENFTSGgsaRCDTRANLLAKGCSPESIENPASSAEVLEDKPLSdkgSGGQAVQVSPQRVRLKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 112 RPGEERSFVFQVFEPLESPVDLYILMDFSNSMSDDLDNLKQMGQNLAKILRQLTSDYTIGFGKFVDKVSVPQTDMRPEKL 191
Cdd:smart00187 81 RPGEPQNFTLTVRQAEDYPVDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTHPEKL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 192 KEPWPN----SDPPFSFKNVISLTENVEEFWNKLQGERISGNLDAPEGGFDAILQTAVCTRDIGWRADSTHLLVFSTESA 267
Cdd:smart00187 161 ENPCPNynktCEPPYGFKHVLSLTDDTDEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 268 FHYEADGAnvLAGIMNRNDEKCHLDASGAYTQYKTQDYPSVPTLVRLLAKHNIIPIFAVTNYSYSYYEKLHKYFPVSSLG 347
Cdd:smart00187 241 FHFAGDGK--LGGIVTPNDGQCHLDNNGEYTMSTTQDYPSIGQLAQKLAENNINPIFAVTKKQVSLYKELSALIPGSSVG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 348 VLQEDSSNIVELLEEAFYRIRSNLDIRALDSPRGLRTEVTSdTLQKTETGSFHikRGEVGTYNVHLRAVEDIDGTHVCQl 427
Cdd:smart00187 319 ELSEDSSNVVELIKDAYNKISSRVELEDNALPEGVSVTYTS-SCPGGVTGPGT--RKCEGVKIGDTVSFEVTVTATKCP- 394
|
410 420
....*....|....*....|....*....
gi 110735428 428 aKEDQGGNIHLKP-SFSDGLRMDASVICD 455
Cdd:smart00187 395 -PEDQEQSIRIRPvGFSETLEVEVTFLCD 422
|
|
| Integrin_beta |
pfam00362 |
Integrin beta chain VWA domain; Integrins have been found in animals and their homologs have ... |
126-371 |
4.01e-147 |
|
Integrin beta chain VWA domain; Integrins have been found in animals and their homologs have also been found in cyanobacteria, probably due to horizontal gene transfer. This domain corresponds to the integrin beta VWA domain.
Pssm-ID: 459781 Cd Length: 248 Bit Score: 452.34 E-value: 4.01e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 126 PLESPVDLYILMDFSNSMSDDLDNLKQMGQNLAKILRQLTSDYTIGFGKFVDKVSVPQTDMRPEKLKEPWPNS----DPP 201
Cdd:pfam00362 1 AEDYPVDLYYLMDLSYSMKDDLDNLKKLGNDLAEEMRNITSNFRLGFGSFVDKPVMPYISTRPEKLKNPCPGEneqcDPP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 202 FSFKNVISLTENVEEFWNKLQGERISGNLDAPEGGFDAILQTAVCTRDIGWRADSTHLLVFSTESAFHYEADGAnvLAGI 281
Cdd:pfam00362 81 FGFRHVLSLTNDIEEFTEEVQKQRISGNLDAPEGGFDAIMQAAVCKDQIGWRNEARRLLVFSTDAGFHYAGDGK--LAGI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 282 MNRNDEKCHLDASGAYTQYKTQDYPSVPTLVRLLAKHNIIPIFAVTNYSYSYYEKLHKYFPVSSLGVLQEDSSNIVELLE 361
Cdd:pfam00362 159 VTPNDGQCHLDSNGEYTKSTEQDYPSLGQLVRKLSENNINPIFAVTEEQYSLYEKLSKLIPGSSVGVLSEDSSNIVQLIK 238
|
250
....*....|
gi 110735428 362 EAFYRIRSNL 371
Cdd:pfam00362 239 EAYEKIRSKV 248
|
|
| Calx_beta |
smart00237 |
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ... |
991-1085 |
2.72e-27 |
|
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Pssm-ID: 197594 [Multi-domain] Cd Length: 90 Bit Score: 106.96 E-value: 2.72e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 991 GVVSFEQPEYSVSRGDQVARIPVIRHILDNGKSQVSYSTQDNTAHGHRDYVPVEGELLFHPGETWKELQVKLLelqeVDS 1070
Cdd:smart00237 2 GSVGFEQPVYTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKII----DDD 77
|
90
....*....|....*
gi 110735428 1071 LLRGrqVRRFQVQLS 1085
Cdd:smart00237 78 IYEK--DETFYVRLS 90
|
|
| Integrin_B_tail |
pfam07965 |
Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are ... |
628-710 |
3.07e-24 |
|
Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are receptors which are involved in cell-cell and cell-extracellular matrix interactions.
Pssm-ID: 462325 Cd Length: 84 Bit Score: 98.12 E-value: 3.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 628 CEDLRSCVQCQAWGTGEKKGRACD-DCPFKVKMVDELK--KEEVVEYCSFRDEdDDCTYSYNVEGDgsPGPNSTVLVHKK 704
Cdd:pfam07965 1 CEEKKSCVECQAFKTGPLKEKNCSrNCKFEIILVEVLKedEEPGAVLCSFKDE-DDCWFTFTYYED--ESGKYVVHVQKE 77
|
....*.
gi 110735428 705 KDCPPG 710
Cdd:pfam07965 78 RECPPG 83
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1572-1657 |
9.39e-22 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 90.94 E-value: 9.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1572 SAPGPLVFTALSPDSLQLSWERPRRPNGDILGYLVTCEMAQGGAPARTFRVDGDnpESRLTVPGLSENVPYKFKVQARTT 1651
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPPDGNGPITGYEVEYRPKNSGEPWNEITVPGT--TTSVTLTGLKPGTEYEVRVQAVNG 78
|
....*.
gi 110735428 1652 EGFGPE 1657
Cdd:pfam00041 79 GGEGPP 84
|
|
| Calx-beta |
pfam03160 |
Calx-beta domain; |
991-1085 |
4.28e-21 |
|
Calx-beta domain;
Pssm-ID: 397326 [Multi-domain] Cd Length: 91 Bit Score: 89.23 E-value: 4.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 991 GVVSFEQPEYSVSRGDQVARIPVIRHILD-NGKSQVSYSTQDNTAHGHRDYVPVEGELLFHPGETWKELQVKLLElqevD 1069
Cdd:pfam03160 2 GVIGFEPPTYQVSENDGVAEVCVVRMSGTlRRTVVVPYRTEDGTATAGDDYEPVEGELVFGPGETEKCINVTIID----D 77
|
90
....*....|....*.
gi 110735428 1070 SLLRGRqvRRFQVQLS 1085
Cdd:pfam03160 78 DVYEGD--ENFFVLLS 91
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1458-1539 |
7.83e-19 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 82.93 E-value: 7.83e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1458 PDTPTRLVFSALGPTSLKVSWQEPQCD-RMLLGYSVEYQLLNGGEMHRLNIPNPGQTSVVVEDLLPNHSYVFRVRAQSQE 1536
Cdd:cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDgGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80
|
...
gi 110735428 1537 GWG 1539
Cdd:cd00063 81 GES 83
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1459-1541 |
2.64e-18 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 81.31 E-value: 2.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1459 DTPTRLVFSALGPTSLKVSWQEP-QCDRMLLGYSVEYQLLNGGEM-HRLNIPNPgQTSVVVEDLLPNHSYVFRVRAQSQE 1536
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPpDGNGPITGYEVEYRPKNSGEPwNEITVPGT-TTSVTLTGLKPGTEYEVRVQAVNGG 79
|
....*
gi 110735428 1537 GWGRE 1541
Cdd:pfam00041 80 GEGPP 84
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1571-1656 |
1.88e-16 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 76.00 E-value: 1.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1571 PSAPGPLVFTALSPDSLQLSWERPRRPNGDILGYLVTCEMAQGGAPARTFRVDGDnpESRLTVPGLSENVPYKFKVQART 1650
Cdd:cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGS--ETSYTLTGLKPGTEYEFRVRAVN 78
|
....*.
gi 110735428 1651 TEGFGP 1656
Cdd:cd00063 79 GGGESP 84
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1129-1209 |
5.38e-16 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 74.76 E-value: 5.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1129 GAPQNPNAKAAGSRKIHFNWLPPP---GKPMGYRVKYWIQGDSESEAHLLDSKVP-SVELTNLYPYCDYEMKVCAYGAQG 1204
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPPdgnGPITGYEVEYRPKNSGEPWNEITVPGTTtSVTLTGLKPGTEYEVRVQAVNGGG 80
|
....*
gi 110735428 1205 EGPYS 1209
Cdd:pfam00041 81 EGPPS 85
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1458-1539 |
2.96e-15 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 72.26 E-value: 2.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1458 PDTPTRLVFSALGPTSLKVSWQEPQCDRmLLGYSVEYQLLNGGEMHRLN--IPNPGQTSVVVEDLLPNHSYVFRVRAQSQ 1535
Cdd:smart00060 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDG-ITGYIVGYRVEYREEGSEWKevNVTPSSTSYTLTGLKPGTEYEFRVRAVNG 79
|
....
gi 110735428 1536 EGWG 1539
Cdd:smart00060 80 AGEG 83
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1571-1655 |
4.16e-15 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 71.88 E-value: 4.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1571 PSAPGPLVFTALSPDSLQLSWERPRRPNGDilGYLVTCEMAQGGAPARTFRVDGDNPESRLTVPGLSENVPYKFKVQART 1650
Cdd:smart00060 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGIT--GYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVN 78
|
....*
gi 110735428 1651 TEGFG 1655
Cdd:smart00060 79 GAGEG 83
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1221-1314 |
2.44e-14 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 70.22 E-value: 2.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1221 PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNEDNrpigpMKKVLVDNPKNRMLLIENLRESQPYRYTVK 1300
Cdd:cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGD-----WKEVEVTPGSETSYTLTGLKPGTEYEFRVR 75
|
90
....*....|....
gi 110735428 1301 ARNGAGWGPEREAI 1314
Cdd:cd00063 76 AVNGGGESPPSESV 89
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1222-1310 |
3.45e-14 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 69.37 E-value: 3.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1222 SEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNEdnrpIGPMKKVLVDNPKNRMLLiENLRESQPYRYTVKA 1301
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPPDGNGPITGYEVEYRPKNS----GEPWNEITVPGTTTSVTL-TGLKPGTEYEVRVQA 75
|
....*....
gi 110735428 1302 RNGAGWGPE 1310
Cdd:pfam00041 76 VNGGGEGPP 84
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1129-1216 |
1.16e-13 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 68.29 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1129 GAPQNPNAKAAGSRKIHFNWLPPP---GKPMGYRVKYWIQGDSE-SEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG 1204
Cdd:cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEddgGPITGYVVEYREKGSGDwKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG 81
|
90
....*....|..
gi 110735428 1205 EGPYSSLVSCRT 1216
Cdd:cd00063 82 ESPPSESVTVTT 93
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1457-1676 |
2.55e-12 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 71.96 E-value: 2.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1457 VPDTPTRLVFSALGPTSLKVSWQEPQCDRmLLGYSVEYQLLNGGEMHRlnIPNPGQTSVVVEDLLPNHSYVFRVRAQSQE 1536
Cdd:COG3401 232 PPSAPTGLTATADTPGSVTLSWDPVTESD-ATGYRVYRSNSGDGPFTK--VATVTTTSYTDTGLTNGTTYYYRVTAVDAA 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1537 GwgreregvitIESqvhPQSPlcplPGSAFT-LSTPSAPGPLVFTALSPDSLQLSWERPrrPNGDILGYLVTcemaQGGA 1615
Cdd:COG3401 309 G----------NES---APSN----VVSVTTdLTPPAAPSGLTATAVGSSSITLSWTAS--SDADVTGYNVY----RSTS 365
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110735428 1616 PARTFR-VDGDNPESRLTVPGLSENVPYKFKVQARTTEGFGPEREGIITIESQVGGPFPQLG 1676
Cdd:COG3401 366 GGGTYTkIAETVTTTSYTDTGLTPGTTYYYKVTAVDAAGNESAPSEEVSATTASAASGESLT 427
|
|
| PSI_integrin |
pfam17205 |
Integrin plexin domain; This short disulphide rich domain is found at the N-terminus of ... |
29-74 |
5.14e-11 |
|
Integrin plexin domain; This short disulphide rich domain is found at the N-terminus of integrin beta chains.
Pssm-ID: 465380 Cd Length: 47 Bit Score: 59.10 E-value: 5.14e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 110735428 29 NRCKKAQvKSCTECIRVDKSCAYCTDELF--KERRCNTQAELLAAGCR 74
Cdd:pfam17205 1 NRCTSAS-TSCEECIQSGPDCAWCTDENFtsGSPRCDTRENLLARGCS 47
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1130-1306 |
1.02e-10 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 66.56 E-value: 1.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1130 APQNPNAKAAGSRKIHFNWLPPPGKP-MGYRVKYWIQGDSESEahlldsKVPSVELTNlypYCD--------YEMKVCAY 1200
Cdd:COG3401 235 APTGLTATADTPGSVTLSWDPVTESDaTGYRVYRSNSGDGPFT------KVATVTTTS---YTDtgltngttYYYRVTAV 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1201 GAQG-EGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPaeTNGEITAYEVcYglvnEDNRPIGPMKKVlVDNP 1279
Cdd:COG3401 306 DAAGnESAPSNVVSVTTDLTPPAAPSGLTATAVGSSSITLSWTAS--SDADVTGYNV-Y----RSTSGGGTYTKI-AETV 377
|
170 180
....*....|....*....|....*..
gi 110735428 1280 KNRMLLIENLRESQPYRYTVKARNGAG 1306
Cdd:COG3401 378 TTTSYTDTGLTPGTTYYYKVTAVDAAG 404
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1129-1206 |
9.15e-10 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 56.85 E-value: 9.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1129 GAPQNPNAKAAGSRKIHFNWLPPPGK-PMGYRVKYWIQGDSESEA---HLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG 1204
Cdd:smart00060 2 SPPSNLRVTDVTSTSVTLSWEPPPDDgITGYIVGYRVEYREEGSEwkeVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81
|
..
gi 110735428 1205 EG 1206
Cdd:smart00060 82 EG 83
|
|
| I-EGF_1 |
pfam18372 |
Integrin beta epidermal growth factor like domain 1; This is the I-EGF 1 domain found in ... |
459-487 |
1.26e-09 |
|
Integrin beta epidermal growth factor like domain 1; This is the I-EGF 1 domain found in several integrin betas such as integrin beta 1-7. Structural analysis reveal an epidermal growth factor-like (I-EGF) domains 1 and 2. EGF1 lacks one disulfide (C2-C4) relative to the integrin EGF 2, 3, and 4 domains, this allows the C-terminal end of EGF1 to flex remarkably relative to its N-terminal end.
Pssm-ID: 465729 Cd Length: 29 Bit Score: 54.80 E-value: 1.26e-09
10 20
....*....|....*....|....*....
gi 110735428 459 CELQKEVRSARCHFRGDFMCGHCVCNEGW 487
Cdd:pfam18372 1 CEKQAEPNSPRCSGNGTFVCGVCVCNPGY 29
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1221-1308 |
2.14e-09 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 55.70 E-value: 2.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1221 PSEPGRLAFNVVSSTVTQLSWAEPAETNGeiTAYEVCYGLVNednRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVK 1300
Cdd:smart00060 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEY---REEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVR 75
|
....*...
gi 110735428 1301 ARNGAGWG 1308
Cdd:smart00060 76 AVNGAGEG 83
|
|
| caca |
TIGR00845 |
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ... |
993-1107 |
7.80e-08 |
|
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]
Pssm-ID: 273296 [Multi-domain] Cd Length: 928 Bit Score: 57.49 E-value: 7.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 993 VSFEQPEYSVSRGDQVARIPVIRHILDNGKS-QVSYSTQDNTAHGHRDYVPVEGELLFHPGETWKELQVKLL--ELQEVD 1069
Cdd:TIGR00845 402 IFFEPGHYTCLENCGTVALTVVRRGGDLTNTvYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIddDIFEED 481
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 110735428 1070 sllrgrqvRRFQVQLSNPKFG--------------ARLGQPSTTTVILGEHD 1107
Cdd:TIGR00845 482 --------EHFYVRLSNLRVGsedgileanhvsavAQLASPNTATVTILDDD 525
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1509-1653 |
1.79e-07 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 56.16 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1509 NPGQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVitiesqvhpqsplcplpgSAFTLST-PSAPGPLVFTALSPDSL 1587
Cdd:COG3401 188 TSTTLVDGGGDIEPGTTYYYRVAATDTGGESAPSNEV------------------SVTTPTTpPSAPTGLTATADTPGSV 249
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 110735428 1588 QLSWERPrrPNGDILGYLVtcemAQGGAPARTFRVDGDNPESRLTVPGLSENVPYKFKVQARTTEG 1653
Cdd:COG3401 250 TLSWDPV--TESDATGYRV----YRSNSGDGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAG 309
|
|
| caca |
TIGR00845 |
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ... |
979-1092 |
1.77e-06 |
|
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]
Pssm-ID: 273296 [Multi-domain] Cd Length: 928 Bit Score: 53.26 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 979 LVNITIIKEQASGVVSFEQPEYSVSRGDQVARIPVIRHILDNGKSQVSYSTQDNTA-HGHRDYVPVEGELLFHPGETWKE 1057
Cdd:TIGR00845 516 TATVTILDDDHAGIFTFEEDVFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTArGGGKDFEDTCGELEFENDETEKT 595
|
90 100 110
....*....|....*....|....*....|....*
gi 110735428 1058 LQVKLLELQEVDsllrgRQVrRFQVQLSNPKFGAR 1092
Cdd:TIGR00845 596 IRVKIVDDEEYE-----KND-TFFIELGEPRWAKR 624
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1147-1306 |
2.65e-06 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 52.31 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1147 NWLPPPGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGR 1226
Cdd:COG3401 159 TASSVAGAGVVVSPDTSATAAVATTSLTVTSTTLVDGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTG 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1227 LAFNVVSSTVTQLSWAEPAETNgeITAYEVCYGlvnedNRPIGPMKKvlVDNPKNRMLLIENLRESQPYRYTVKARNGAG 1306
Cdd:COG3401 239 LTATADTPGSVTLSWDPVTESD--ATGYRVYRS-----NSGDGPFTK--VATVTTTSYTDTGLTNGTTYYYRVTAVDAAG 309
|
|
| COG3979 |
COG3979 |
Chitodextrinase [Carbohydrate transport and metabolism]; |
1571-1653 |
1.42e-03 |
|
Chitodextrinase [Carbohydrate transport and metabolism];
Pssm-ID: 443178 [Multi-domain] Cd Length: 369 Bit Score: 42.84 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110735428 1571 PSAPGPLVFTALSPDSLQLSWErPRRPNGDILGYLVTcemaQGGAPARTfrVDGDNpesRLTVPGLSENVPYKFKVQART 1650
Cdd:COG3979 3 PTAPTGLTASNVTSSSVSLSWD-ASTDNVGVTGYDVY----RGGDQVAT--VTGLT---AWTVTGLTPGTEYTFTVGACD 72
|
...
gi 110735428 1651 TEG 1653
Cdd:COG3979 73 AAG 75
|
|
|