NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|224967132|ref|NP_079565|]
View 

transforming growth factor beta regulator 1 [Mus musculus]

Protein Classification

FYRN and FYRC domain-containing protein( domain architecture ID 10532225)

FYRN and FYRC domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FYRN pfam05964
F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 183-233 1.02e-25

F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00541.


:

Pssm-ID: 461787  Cd Length: 51  Bit Score: 98.35  E-value: 1.02e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 224967132  183 GGLTVYSLGEIITNRPGFHDENAIYPVGYCSTRVYASMKCPDQKCLYTCQI 233
Cdd:pfam05964   1 GSLTVLSLGEIVPDRPAFHTERYIYPVGYKSTRLYWSTKDPRKRCRYTCEI 51
FYRC pfam05965
F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 239-320 8.22e-24

F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00542.


:

Pssm-ID: 461788  Cd Length: 83  Bit Score: 94.21  E-value: 8.22e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224967132  239 QPQFEIVPEDDPQNTIVGSSADACYEELLRAI----SATTGKLMPNPLSCGADFFGFSHPTIHNLIQSCPEAQNCVNYqw 314
Cdd:pfam05965   1 GPLFRVTVEEDPDESFEGSSPTKCWSMVLERVqelrREAGLKLKLPESISGEDMFGLTHPAVVRLIESLPGAEKCTNY-- 78


                  ....*.
gi 224967132  315 vKFDAC 320
Cdd:pfam05965  79 -KFRYG 83
 
Name Accession Description Interval E-value
FYRN pfam05964
F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 183-233 1.02e-25

F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00541.


Pssm-ID: 461787  Cd Length: 51  Bit Score: 98.35  E-value: 1.02e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 224967132  183 GGLTVYSLGEIITNRPGFHDENAIYPVGYCSTRVYASMKCPDQKCLYTCQI 233
Cdd:pfam05964   1 GSLTVLSLGEIVPDRPAFHTERYIYPVGYKSTRLYWSTKDPRKRCRYTCEI 51
FYRC pfam05965
F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 239-320 8.22e-24

F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00542.


Pssm-ID: 461788  Cd Length: 83  Bit Score: 94.21  E-value: 8.22e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224967132  239 QPQFEIVPEDDPQNTIVGSSADACYEELLRAI----SATTGKLMPNPLSCGADFFGFSHPTIHNLIQSCPEAQNCVNYqw 314
Cdd:pfam05965   1 GPLFRVTVEEDPDESFEGSSPTKCWSMVLERVqelrREAGLKLKLPESISGEDMFGLTHPAVVRLIESLPGAEKCTNY-- 78


                  ....*.
gi 224967132  315 vKFDAC 320
Cdd:pfam05965  79 -KFRYG 83
FYRN smart00541
FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region ...
 192-235 5.11e-15

FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.


Pssm-ID: 128814  Cd Length: 44  Bit Score: 68.46  E-value: 5.11e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 224967132   192 EIITNRPGFHDENAIYPVGYCSTRVYASMKCPDQKCLYTCQIKD 235
Cdd:smart00541   1 LLPIQGKLFHSESAIFPVGYKSTRKYWSVKDPNRRCLYSCVIDE 44
FYRC smart00542
FY-rich domain, C-terminal region; is sometimes closely juxtaposed with the N-terminal region ...
 241-313 6.54e-11

FY-rich domain, C-terminal region; is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.


Pssm-ID: 197781  Cd Length: 86  Bit Score: 58.07  E-value: 6.54e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224967132   241 QFEIVPEDDPQNTIVGSSADACYEELL----RAISATTGKLMPNPLSCGADFFGFSHPTIHNLIQSCPEAQNCVNYQ 313
Cdd:smart00542   1 LFRVEIESDPGEVFKGESPEKCWEMVLervqEARIAADLLQLLPEGVSGEEMFGLSSPAVVKLIEALPGVHQCTNYW 77
 
Name Accession Description Interval E-value
FYRN pfam05964
F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 183-233 1.02e-25

F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00541.


Pssm-ID: 461787  Cd Length: 51  Bit Score: 98.35  E-value: 1.02e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 224967132  183 GGLTVYSLGEIITNRPGFHDENAIYPVGYCSTRVYASMKCPDQKCLYTCQI 233
Cdd:pfam05964   1 GSLTVLSLGEIVPDRPAFHTERYIYPVGYKSTRLYWSTKDPRKRCRYTCEI 51
FYRC pfam05965
F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 239-320 8.22e-24

F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00542.


Pssm-ID: 461788  Cd Length: 83  Bit Score: 94.21  E-value: 8.22e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224967132  239 QPQFEIVPEDDPQNTIVGSSADACYEELLRAI----SATTGKLMPNPLSCGADFFGFSHPTIHNLIQSCPEAQNCVNYqw 314
Cdd:pfam05965   1 GPLFRVTVEEDPDESFEGSSPTKCWSMVLERVqelrREAGLKLKLPESISGEDMFGLTHPAVVRLIESLPGAEKCTNY-- 78


                  ....*.
gi 224967132  315 vKFDAC 320
Cdd:pfam05965  79 -KFRYG 83
FYRN smart00541
FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region ...
 192-235 5.11e-15

FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.


Pssm-ID: 128814  Cd Length: 44  Bit Score: 68.46  E-value: 5.11e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 224967132   192 EIITNRPGFHDENAIYPVGYCSTRVYASMKCPDQKCLYTCQIKD 235
Cdd:smart00541   1 LLPIQGKLFHSESAIFPVGYKSTRKYWSVKDPNRRCLYSCVIDE 44
FYRC smart00542
FY-rich domain, C-terminal region; is sometimes closely juxtaposed with the N-terminal region ...
 241-313 6.54e-11

FY-rich domain, C-terminal region; is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.


Pssm-ID: 197781  Cd Length: 86  Bit Score: 58.07  E-value: 6.54e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 224967132   241 QFEIVPEDDPQNTIVGSSADACYEELL----RAISATTGKLMPNPLSCGADFFGFSHPTIHNLIQSCPEAQNCVNYQ 313
Cdd:smart00542   1 LFRVEIESDPGEVFKGESPEKCWEMVLervqEARIAADLLQLLPEGVSGEEMFGLSSPAVVKLIEALPGVHQCTNYW 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH