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Conserved domains on  [gi|169790777|ref|NP_061894|]
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uncharacterized protein C11orf71 isoform 2 [Homo sapiens]

Protein Classification

DUF4687 domain-containing protein( domain architecture ID 11239049)

DUF4687 domain-containing protein similar to Homo sapiens protein C11orf71

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4687 pfam15747
Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins ...
 1-112 2.86e-56

Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins in this family are typically between 76 and 140 amino acids in length.


:

Pssm-ID: 374073  Cd Length: 120  Bit Score: 171.59  E-value: 2.86e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169790777    1 MALNNVSLSSGDQRSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIH--LGPRQAVRPSVRAESRRVDGGGRSP--- 75
Cdd:pfam15747   1 MALNCVSLSAGDQGNRVAYRASRGDLSPSASALAMVSGDSFLVARPEAILpgPVPRQAVRPSVRTESRRATGGGRSPtrl 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 169790777   76 ---REPDGRGRSRQARFSPYPIPAVEPDLLRSVLQQRLIA 112
Cdd:pfam15747  81 ikgRDPDGRNRSRQARFSPYPAPGVKLDLLRSVLQQRLVA 120
 
Name Accession Description Interval E-value
DUF4687 pfam15747
Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins ...
 1-112 2.86e-56

Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins in this family are typically between 76 and 140 amino acids in length.


Pssm-ID: 374073  Cd Length: 120  Bit Score: 171.59  E-value: 2.86e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169790777    1 MALNNVSLSSGDQRSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIH--LGPRQAVRPSVRAESRRVDGGGRSP--- 75
Cdd:pfam15747   1 MALNCVSLSAGDQGNRVAYRASRGDLSPSASALAMVSGDSFLVARPEAILpgPVPRQAVRPSVRTESRRATGGGRSPtrl 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 169790777   76 ---REPDGRGRSRQARFSPYPIPAVEPDLLRSVLQQRLIA 112
Cdd:pfam15747  81 ikgRDPDGRNRSRQARFSPYPAPGVKLDLLRSVLQQRLVA 120
 
Name Accession Description Interval E-value
DUF4687 pfam15747
Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins ...
 1-112 2.86e-56

Domain of unknown function (DUF4687); This family of proteins is found in eukaryotes. Proteins in this family are typically between 76 and 140 amino acids in length.


Pssm-ID: 374073  Cd Length: 120  Bit Score: 171.59  E-value: 2.86e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169790777    1 MALNNVSLSSGDQRSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIH--LGPRQAVRPSVRAESRRVDGGGRSP--- 75
Cdd:pfam15747   1 MALNCVSLSAGDQGNRVAYRASRGDLSPSASALAMVSGDSFLVARPEAILpgPVPRQAVRPSVRTESRRATGGGRSPtrl 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 169790777   76 ---REPDGRGRSRQARFSPYPIPAVEPDLLRSVLQQRLIA 112
Cdd:pfam15747  81 ikgRDPDGRNRSRQARFSPYPAPGVKLDLLRSVLQQRLVA 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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