|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
131-793 |
1.89e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 1.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 131 KRLQVTNPDLTQVVSLVVEREKQ----------------KSEAKDRKVLEIL----QVKDAKIQEFEQRESVLKQEINDL 190
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELERQlkslerqaekaerykeLKAELRELELALLvlrlEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 191 VKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLV---IKNLEEENKKLSTRCTDLLNDLEKLRKQ 267
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILrerLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 268 EAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQ----ELQNLYKQNST 343
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIErleaRLERLEDRRER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 344 HTAQQAELIQQLQVLNMDTQKV-----------LRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQL 412
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAeleeleeeleeLQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 413 LQKEQENAKLKEKLQESQGAPLPLPQ-----ESDPDYSA----------------------------------------- 446
Cdd:TIGR02168 499 ENLEGFSEGVKALLKNQSGLSGILGVlseliSVDEGYEAaieaalggrlqavvvenlnaakkaiaflkqnelgrvtflpl 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 447 --------QVPHRPSLSSLETLMVSQKSEIEY--------------------LQEKLKIANE-KLSENISANKG--FSRK 495
Cdd:TIGR02168 579 dsikgteiQGNDREILKNIEGFLGVAKDLVKFdpklrkalsyllggvlvvddLDNALELAKKlRPGYRIVTLDGdlVRPG 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 496 SIMTSAEGKHKEPPVKRSRSLspkssftdsEEL-QKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYR 574
Cdd:TIGR02168 659 GVITGGSAKTNSSILERRREI---------EELeEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 575 AVKEQLKQWEEgsgmTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMI----QKMNLEEELDELKVHISIDKAAI 650
Cdd:TIGR02168 730 ALRKDLARLEA----EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEIEELEAQIEQLKEELKALREAL 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 651 QELNRCVAERREEQL-FRSGEDDEVKRSTPEKNGKEMLEQTLQKVTElenRLKSFEKRSRKLKEGNKKLMKENDFLKSLL 729
Cdd:TIGR02168 806 DELRAELTLLNEEAAnLRERLESLERRIAATERRLEDLEEQIEELSE---DIESLAAEIEELEELIEELESELEALLNER 882
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110815815 730 KQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELIN 793
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
142-791 |
1.07e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.18 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 142 QVVSLVVEREKQKSEAKD-RKVLEILQVKDAKIQEfeqRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKfkdksq 220
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEElEREIEEERKRRDKLTE---EYAELKEELEDLRAELEEVDKEFAETRDELKDYREK------ 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 221 eikdtKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQ 300
Cdd:TIGR02169 394 -----LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 301 SKYNALSLQLSNKQTELIQKdmditlvRKELQELQnlykqnsthtaQQAELIQQLQVLNMDTQKVLR-NQEDVH--TAES 377
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKL-------QRELAEAE-----------AQARASEERVRGGRAVEEVLKaSIQGVHgtVAQL 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 378 ISYQKLYnelHICFETTKSNEamlrqsvtnLQDQLLQKEQENAKLKEKLQESQGAP---LPLPQESDPDYSAQVPHRPSL 454
Cdd:TIGR02169 531 GSVGERY---ATAIEVAAGNR---------LNNVVVEDDAVAKEAIELLKRRKAGRatfLPLNKMRDERRDLSILSEDGV 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 455 SSLETLMVSQKSEIEYLQeKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPP---VKRSRSLSPKSSFT--DSEELQ 529
Cdd:TIGR02169 599 IGFAVDLVEFDPKYEPAF-KYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSgamTGGSRAPRGGILFSrsEPAELQ 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 530 KLRKAERKIENLEKALQ--LKSQEN------DELRDAHEKRKE---RLQMLQTNYRAVKEQLKQWEEgsgmtEIRKIKRA 598
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQseLRRIENrldelsQELSDASRKIGEiekEIEQLEQEEEKLKERLEELEE-----DLSSLEQE 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 599 dpqqlrqedSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAI--QELNRCVAERREEQLFRSGEDDEVKR 676
Cdd:TIGR02169 753 ---------IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEiqAELSKLEEEVSRIEARLREIEQKLNR 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 677 STPEKNGKEMLEQTLQ-KVTELENRLKSFEKRsrkLKEGNKKLMKendfLKSLLKQQQEDTETREKELEQIIKGSKDVEK 755
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQeQRIDLKEQIKSIEKE---IENLNGKKEE----LEEELEELEAALRDLESRLGDLKKERDELEA 896
|
650 660 670
....*....|....*....|....*....|....*..
gi 110815815 756 ENTELQVKISELETEVTSLRRQVAEANA-LRNENEEL 791
Cdd:TIGR02169 897 QLRELERKIEELEAQIEKKRKRLSELKAkLEALEEEL 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
154-748 |
2.66e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 2.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 154 KSEAKDRKVLEIL---QVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQ 230
Cdd:COG1196 219 KEELKELEAELLLlklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 231 NKEEQNRLV---IKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALS 307
Cdd:COG1196 299 RLEQDIARLeerRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 308 LQLSNKQTELIQKDMDITLVRKELQELQnlyKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLynel 387
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELE---EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE---- 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 388 hicfETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQE--SQGAPLPLPQESDPDYSAQVPhRPSLSSLETLMVSQK 465
Cdd:COG1196 452 ----AELEEEEEALLELLAELLEEAALLEAALAELLEELAEaaARLLLLLEAEADYEGFLEGVK-AALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 466 SEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKR-----SRSLSPKSSFTDSEELQKLRKAERKIEN 540
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRatflpLDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 541 LEKALQLKSQ-------ENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWN 613
Cdd:COG1196 607 DLREADARYYvlgdtllGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 614 ELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEqtlqk 693
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD----- 761
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110815815 694 VTELENRLKSFEKRSRKLKEGN-------KKLMKENDFLKSllkqQQEDTETREKELEQIIK 748
Cdd:COG1196 762 LEELERELERLEREIEALGPVNllaieeyEELEERYDFLSE----QREDLEEARETLEEAIE 819
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
241-808 |
3.77e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 3.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 241 KNLEEENKKLsTRCTDLLNDLEK-----------------LRKQEAHLRKEKYSTDakIKTFEDNLIEARKEVEVSQSKY 303
Cdd:TIGR02168 179 RKLERTRENL-DRLEDILNELERqlkslerqaekaerykeLKAELRELELALLVLR--LEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 304 NALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQnstHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKL 383
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYA---LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 384 ynelhicfETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLETLMVS 463
Cdd:TIGR02168 333 --------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 464 QKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRslspkssftDSEELQKLRKAERKIENLEK 543
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE---------LERLEEALEELREELEEAEQ 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 544 ALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGM---------------TEIRKIKRADPQQLRQEDS 608
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIlgvlselisvdegyeAAIEAALGGRLQAVVVENL 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 609 DAVWNELAYFKRENQ------------------ELMIQKMNLEEELDELKVHISIDKAA----------------IQELN 654
Cdd:TIGR02168 556 NAAKKAIAFLKQNELgrvtflpldsikgteiqgNDREILKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddLDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 655 RCVAERREEQLF-------------RSGEDDEVKRSTPE-----KNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNK 716
Cdd:TIGR02168 636 ELAKKLRPGYRIvtldgdlvrpggvITGGSAKTNSSILErrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 717 KLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPME 796
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
650
....*....|..
gi 110815815 797 KSHQSADRAKSE 808
Cdd:TIGR02168 796 EELKALREALDE 807
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
525-783 |
4.36e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 4.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 525 SEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMT----------EIRK 594
Cdd:TIGR02169 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigeleaEIAS 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 595 IKRA-DPQQLRQEDSDA-----------VWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERRE 662
Cdd:TIGR02169 306 LERSiAEKERELEDAEErlakleaeidkLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 663 EQLFRSGEDDEVKRSTPEKNGK-----EMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTE 737
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKREldrlqEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 110815815 738 TREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANA 783
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
528-805 |
6.72e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 6.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 528 LQKLRKAERKIENLEKALQLKSQENDELR---DAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLR 604
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEaelAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 605 QEDSDAvwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRStpEKNGK 684
Cdd:COG1196 311 RRELEE---RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE--LEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 685 EMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKI 764
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 110815815 765 SELETEVTSLRRQVAEANALRNEN---EELINPMEKSHQSADRA 805
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAaarLLLLLEAEADYEGFLEG 509
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
450-797 |
1.30e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 450 HRPSLSSLETLMVSQKSEIEYLQEKLKIANEKLSEnisankgfsrksimTSAEGKHKEPPVKRSRSLSPKSS--FTDSEE 527
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEE--------------LKKEIEELEEKVKELKELKEKAEeyIKLSEF 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 528 LQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLRQED 607
Cdd:PRK03918 302 YEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 608 SDavwNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQlfrsGEDDEVKRSTPEKNGKEML 687
Cdd:PRK03918 382 TG---LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK----GKCPVCGRELTEEHRKELL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 688 EQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTE---LQVKI 764
Cdd:PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEyekLKEKL 534
|
330 340 350
....*....|....*....|....*....|...
gi 110815815 765 SELETEVTSLRRQVAEANALRNENEELINPMEK 797
Cdd:PRK03918 535 IKLKGEIKSLKKELEKLEELKKKLAELEKKLDE 567
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
526-808 |
5.63e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 5.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 526 EELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEgsgmteirkikradpqqlrq 605
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-------------------- 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 606 edsdavwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQlfrsgeddevkrstpeKNGKE 685
Cdd:COG1196 303 --------DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL----------------EEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 686 MLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKIS 765
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 110815815 766 ELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSE 808
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
103-663 |
1.19e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 103 QLLEEELSSLKEELALCQADKEfvwslwkRLQVTNPDLTQVVSLVVEREkQKSEAKDRKVLEILQVKDAKIQEFEQRESV 182
Cdd:COG1196 249 EELEAELEELEAELAELEAELE-------ELRLELEELELELEEAQAEE-YELLAELARLEQDIARLEERRRELEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 183 LKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLST---RCTDLLN 259
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEalrAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 260 DLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYK 339
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 340 QNSTHTAQQAELIQQLQvlNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVT-NLQDQLLQKEQE 418
Cdd:COG1196 481 ELLEELAEAAARLLLLL--EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAaALQNIVVEDDEV 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 419 NAKLKEKLQESQ-GAPLPLPQESDPDYSAQVPHRPSLSSLETLMVSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSI 497
Cdd:COG1196 559 AAAAIEYLKAAKaGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 498 MTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVK 577
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 578 EQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWNELA-YFKRENQELMIQKmnLEEELDELKvhiSIDKAAIQELNRc 656
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPePPDLEELERELER--LEREIEALG---PVNLLAIEEYEE- 792
|
....*..
gi 110815815 657 VAERREE 663
Cdd:COG1196 793 LEERYDF 799
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
131-780 |
1.82e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 131 KRLQVTNPDLTQVVSLVVEREKQ-KSEAKDRKVLEILQVKDAKIQEFEQRESVLKQeiNDLVKRKIAVDEENAFLRKEFS 209
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQeLKLKEQAKKALEYYQLKEKLELEEEYLLYLDY--LKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 210 DLEKKFKDKSQEIKDTKECVQNKEEQnrlVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNL 289
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEK---EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 290 IEARKEVE-----------VSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVL 358
Cdd:pfam02463 331 KKEKEEIEelekelkeleiKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 359 N------MDTQKVLRNQEDVHTAESisyQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQGA 432
Cdd:pfam02463 411 LelarqlEDLLKEEKKEELEILEEE---EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 433 PLPLPQESDPDYSAQVPHRPSLSSLETLMVSQKS----EIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEP 508
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGgriiSAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLV 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 509 PVKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSG 588
Cdd:pfam02463 568 RALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESG 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 589 MTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERRE-EQLFR 667
Cdd:pfam02463 648 LRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEElLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 668 SGEDDEVKRSTPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQII 747
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALE 807
|
650 660 670
....*....|....*....|....*....|...
gi 110815815 748 KGSKDVEKENTELQVKISELETEVTSLRRQVAE 780
Cdd:pfam02463 808 EELKEEAELLEEEQLLIEQEEKIKEEELEELAL 840
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
170-741 |
3.33e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 3.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 170 DAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKkfkdksqeikdTKECVQNKEEQNRLV---IKNLEEE 246
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-----------LKEEIEELEKELESLegsKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 247 NKKLSTRCTDLLNDLEKLRKQEAHLR--KEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDI 324
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKelKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 325 TLVRKELQELQNLYkqnsthtaqqAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELhicfETTKSNEAMLRQS 404
Cdd:PRK03918 341 EELKKKLKELEKRL----------EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKEL----EELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 405 VTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPqesdpdysaqVPHRP-SLSSLETLMVSQKSEIEYLQEKLKIANEKLS 483
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELKKAKGKCP----------VCGRElTEEHRKELLEEYTAELKRIEKELKEIEEKER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 484 EnISANKGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQKLRKAERKIEnlEKALQLKSQENDELRDAhekrk 563
Cdd:PRK03918 477 K-LRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK--EKLIKLKGEIKSLKKEL----- 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 564 ERLQMLQTNYRAVKEQLKQWEE--GSGMTEIRKIKRADPQQLRQEDSdavwnELAYFKRENQELMIQKMNLEEELDELKV 641
Cdd:PRK03918 549 EKLEELKKKLAELEKKLDELEEelAELLKELEELGFESVEELEERLK-----ELEPFYNEYLELKDAEKELEREEKELKK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 642 HISIDKAAIQELNRCVAERRE-----EQLFRSGEDDEVKRSTPEKNGKEM-LEQTLQKVTELENRLKSFEKRSRKLKEGN 715
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEElrkelEELEKKYSEEEYEELREEYLELSReLAGLRAELEELEKRREEIKKTLEKLKEEL 703
|
570 580
....*....|....*....|....*.
gi 110815815 716 KKLMKENDFLKSLLKQQQEDTETREK 741
Cdd:PRK03918 704 EEREKAKKELEKLEKALERVEELREK 729
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
151-717 |
1.04e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 151 EKQKSEAKDRKVLEILQVKDAKIQEFEQRESVLK-------QEINDLVKRKIAVDEENAFLRKEFSDLEKK--------- 214
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKaeearkaDELKKAEEKKKADEAKKAEEKKKADEAKKKaeeakkade 1319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 215 FKDKSQEIKDTKECVQNKEEQNRLV--IKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDnliEA 292
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEAKKAaeAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD---EA 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 293 RKEVEVSQSKYNALslqlsNKQTELIQKDMDITLVRKELQELQNLYKQnsTHTAQQAELIQQLQVLNMDTQKVLRNQEDV 372
Cdd:PTZ00121 1397 KKKAEEDKKKADEL-----KKAAAAKKKADEAKKKAEEKKKADEAKKK--AEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 373 HTAESISYQKLynelhicfETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRP 452
Cdd:PTZ00121 1470 KKADEAKKKAE--------EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 453 SLSSLETLMVSQKSEIEYLQEKLKiANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKrsrsLSPKSSFTDSEELQKLR 532
Cdd:PTZ00121 1542 AEEKKKADELKKAEELKKAEEKKK-AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK----LYEEEKKMKAEEAKKAE 1616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 533 KAERKIENLEKA-------LQLKSQENDELRDAHEKRKERlqmLQTNYRAVKEQLKQWEEGSGMTEIRKI---KRADPQQ 602
Cdd:PTZ00121 1617 EAKIKAEELKKAeeekkkvEQLKKKEAEEKKKAEELKKAE---EENKIKAAEEAKKAEEDKKKAEEAKKAeedEKKAAEA 1693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 603 LRQEDSDAVWNELAYFKRENQELMIQKMNLEEE-----LDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRS 677
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEenkikAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 110815815 678 TPEKNG---KEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKK 717
Cdd:PTZ00121 1774 RKEKEAvieEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKE 1816
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
510-1357 |
1.10e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 510 VKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAhEKRKERLQMLQTNYRAvkEQLKQWEEGSGM 589
Cdd:PTZ00121 1066 VGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEA-RKAEEAKKKAEDARKA--EEARKAEDARKA 1142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 590 TEIRKIKRADPQQLRQEDSDAVWNELAYfKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSG 669
Cdd:PTZ00121 1143 EEARKAEDAKRVEIARKAEDARKAEEAR-KAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE 1221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 670 ED---------DEVKRSTPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKEndflkslLKQQQEDTETRE 740
Cdd:PTZ00121 1222 DAkkaeavkkaEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADE-------LKKAEEKKKADE 1294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 741 KELEQIIKGSKDVEKENTELQvKISELETEVTSLRRQvaeANALRNENEELINPMEKSHQSADRAKSEMATMKVRSGRYD 820
Cdd:PTZ00121 1295 AKKAEEKKKADEAKKKAEEAK-KADEAKKKAEEAKKK---ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 821 CKTTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWEDVSESSSDSEAQTSQTLGTIIVETSQKISPTEDG 900
Cdd:PTZ00121 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 901 KDQKESDPTEDSQTQGKEIVQTYlNIDGKTPKDYFHDKNAKKPTFQKKNC----KMQKSSHTAVPTRVNREKYKNITAQK 976
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKAD-EAKKKAEEAKKADEAKKKAEEAKKKAdeakKAAEAKKKADEAKKAEEAKKADEAKK 1529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 977 SSSNIILLRERIISLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLK 1056
Cdd:PTZ00121 1530 AEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1057 KLESSSEITSLAEEnsqvtfpriQVTSLSPSRSMDLEMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKI 1136
Cdd:PTZ00121 1610 EEAKKAEEAKIKAE---------ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1137 SRMERDI-----TMKRHLIEDLKFRQ-KVNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYE 1210
Cdd:PTZ00121 1681 KKAEEDEkkaaeALKKEAEEAKKAEElKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIA 1760
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1211 QMYQKSKEELEKKDLKLTLLVSRISETESAMAEIETaaSKQLQELALQSEQVLEGAQKTLLLANEKVEEFTTFVKalakE 1290
Cdd:PTZ00121 1761 HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV--DKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIK----E 1834
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 110815815 1291 LQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDTEDQVEIEKTKIDAE 1357
Cdd:PTZ00121 1835 VADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIERE 1901
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
204-835 |
1.65e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 204 LRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENK-KLSTRCTDLLNDLEKLRKQEAHLRKE--KYSTDA 280
Cdd:PTZ00121 1072 LKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKaEEAKKKAEDARKAEEARKAEDARKAEeaRKAEDA 1151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 281 KIKTFEDNLIEARKeVEVSQSKYNALSLQLSNKQTEL-----IQKDMDITLVrKELQELQNLYKQNSTHTAQQAELIQQL 355
Cdd:PTZ00121 1152 KRVEIARKAEDARK-AEEARKAEDAKKAEAARKAEEVrkaeeLRKAEDARKA-EAARKAEEERKAEEARKAEDAKKAEAV 1229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 356 QvlnmDTQKVLRNQEDVHTAESISyqklYNELHICFETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLP 435
Cdd:PTZ00121 1230 K----KAEEAKKDAEEAKKAEEER----NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK 1301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 436 LPQESDPDYSaqvphrpslssletlmvSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRS 515
Cdd:PTZ00121 1302 KKADEAKKKA-----------------EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 516 LSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHE-KRKERLQMLQTNYRAVKEQLKQWEEGSGMTEirK 594
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADElKKAAAAKKKADEAKKKAEEKKKADEAKKKAE--E 1442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 595 IKRADPQQLRQEDSDAVWN--ELAYFKRENQELMiQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGED- 671
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEakKKAEEAKKADEAK-KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEa 1521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 672 ---DEVKRSTPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKlmKENDFLKSLLKQQQEDTETREKELEQIIK 748
Cdd:PTZ00121 1522 kkaDEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK--KAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 749 GSKDVEKENTELQVKISELETEVTSLRRqvaeANALRNENEELINPMEKSHQSADRAKSEMATMKVRSGRYDCKTTMTKV 828
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKK----AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
....*..
gi 110815815 829 KFKAAKK 835
Cdd:PTZ00121 1676 KAEEAKK 1682
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
212-799 |
2.16e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 212 EKKFKDKSQEIKDTKECVQNKEEQnrlvIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIE 291
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKE----LKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 292 ARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKEL----QELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLR 367
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIkkkeKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 368 NQEDVHTAESISYQKL-----YNELHICFETTKSNeamLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDP 442
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLsnlkkKIQKNKSLESQISE---LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 443 DYSAQVPHRPSLSSLETLMVSQKSEIEYLQEKLKIANEKLSENISANkgfsRKSIMTSAEGKHKEPPVKRSRSlspkssf 522
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKE----LKSELKNQEKKLEEIQNQISQN------- 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 523 tdseeLQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQ 602
Cdd:TIGR04523 334 -----NKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQ 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 603 LRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPE-- 680
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQkq 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 681 ---KNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETRE----------------K 741
Cdd:TIGR04523 489 kelKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDfelkkenlekeideknK 568
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 110815815 742 ELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSH 799
Cdd:TIGR04523 569 EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN 626
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
984-1273 |
3.53e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 48.28 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 984 LRERIISLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLaglrKEKEDLLK--KLESS 1061
Cdd:pfam10174 420 LKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL----KEKVSALQpeLTEKE 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1062 SEITSLAEensqvtfpriQVTSLSPS-RSMDLEMKQLQYKLKNATNELTKQSSNVKTLKfELLAKEEHIKEMHEKISRME 1140
Cdd:pfam10174 496 SSLIDLKE----------HASSLASSgLKKDSKLKSLEIAVEQKKEECSKLENQLKKAH-NAEEAVRTNPEINDRIRLLE 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1141 RDITMKR-----------HLIEDLKFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKvSIDSLKQRLNVAVKEKSQY 1209
Cdd:pfam10174 565 QEVARYKeesgkaqaeveRLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIK-HGQQEMKKKGAQLLEEARR 643
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110815815 1210 EQMYQKSK----------EELEKKDLKLTLLVSRISETESAMAEIETAASKQLQELALQSEQVLEGAQKTLLLA 1273
Cdd:pfam10174 644 REDNLADNsqqlqleelmGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAA 717
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
592-823 |
3.58e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 592 IRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGED 671
Cdd:PRK03918 151 VRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 672 DEVKRSTPEKNGKEMLEQTLQK-VTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLlKQQQEDTETREKELEQIIKGS 750
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGsKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 110815815 751 KDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEEL---INPMEKSHQSADRAKSEMATMKVRSGRYDCKT 823
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELekrLEELEERHELYEEAKAKKEELERLKKRLTGLT 385
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
178-793 |
6.97e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 6.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 178 QRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDL 257
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 258 LNDLEKLRKQEAHLRKEKySTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNL 337
Cdd:TIGR04523 197 LKLELLLSNLKKKIQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 338 YKQNSTHTAQQAELIQQL--QVLNMDTQKVLRNQEDVHTaESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQK 415
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLksEISDLNNQKEQDWNKELKS-ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 416 EQENAKLKEKLQESQGAPLPLPQESDpdysaqvphrpslssletlmvSQKSEIEYLQEKLKIANEKLSENISANKGFSRK 495
Cdd:TIGR04523 355 ESENSEKQRELEEKQNEIEKLKKENQ---------------------SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 496 SIMTSAEGKHKEPPVKRSRslspkssftdseelQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRA 575
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLK--------------ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 576 VKEQLKQWEEgsgmteirkikradpqqlrqedsdavwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNR 655
Cdd:TIGR04523 480 IKQNLEQKQK----------------------------ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 656 CVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQED 735
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK 611
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 110815815 736 TETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELIN 793
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIK 669
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
259-428 |
8.36e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 8.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 259 NDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLY 338
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 339 kqnsthtaqqAELIQQLQVL-NMDTQKVLRNQEDVHTAESIS--YQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQK 415
Cdd:COG4942 107 ----------AELLRALYRLgRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170
....*....|...
gi 110815815 416 EQENAKLKEKLQE 428
Cdd:COG4942 177 EALLAELEEERAA 189
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
529-1305 |
1.70e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 529 QKLRKAERKIENLEKALqlksqenDELRDAHEKRKERLQMLQ------TNYRAVKEQLKQWEEGSGMTEIRKIKRadpqq 602
Cdd:TIGR02168 172 ERRKETERKLERTRENL-------DRLEDILNELERQLKSLErqaekaERYKELKAELRELELALLVLRLEELRE----- 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 603 lrqedsdavwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEqlfrsgeddevkrstpekn 682
Cdd:TIGR02168 240 -----------ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE------------------- 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 683 gkemLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQV 762
Cdd:TIGR02168 290 ----LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 763 KISELET--------------EVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATMKVRSGRYDCKTTMTKV 828
Cdd:TIGR02168 366 ELEELESrleeleeqletlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 829 KFKAAKKNCSVGRHHTVLN---------------------------HSIKVMSNVFENLSKDG--WEDVSESSSDSEAQT 879
Cdd:TIGR02168 446 EEELEELQEELERLEEALEelreeleeaeqaldaaerelaqlqarlDSLERLQENLEGFSEGVkaLLKNQSGLSGILGVL 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 880 SQ------------------TLGTIIVETSQK-------ISPTEDGK---------DQKESDPTEDSQTQGKEIVQTYLN 925
Cdd:TIGR02168 526 SElisvdegyeaaieaalggRLQAVVVENLNAakkaiafLKQNELGRvtflpldsiKGTEIQGNDREILKNIEGFLGVAK 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 926 IDGKTPKDYfhdKNAKKPTFQkkNCKMQKSSHTAVPTRV-NREKYKNITAQ---------------KSSSNIILLRERII 989
Cdd:TIGR02168 606 DLVKFDPKL---RKALSYLLG--GVLVVDDLDNALELAKkLRPGYRIVTLDgdlvrpggvitggsaKTNSSILERRREIE 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 990 SLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLKKLESSSEITSLAE 1069
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1070 ENSQVTFPRIQVTSLSPSRSMDlEMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHL 1149
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1150 IEDLKFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEksqyeqmYQKSKEELEKKDLKLTL 1229
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE-------LEELSEELRELESKRSE 912
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 110815815 1230 LVSRISETESAMAEIETAASKQLQELALQSEQVLEGAQKTLllanEKVEEFTTFVKALAKELQNDVHVVRRQIREL 1305
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL----EEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
156-808 |
1.79e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 156 EAKDRKVLEILQVKDakiqeFEQRESVLKQEINDLVKRKIAVDEenaFLRKEfSDLEKKFKDKSQEIKDTKECVQNKEEQ 235
Cdd:PRK03918 145 ESREKVVRQILGLDD-----YENAYKNLGEVIKEIKRRIERLEK---FIKRT-ENIEELIKEKEKELEEVLREINEISSE 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 236 NRLVIKNLEEENKKLStRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNAL-SLQLSNKQ 314
Cdd:PRK03918 216 LPELREELEKLEKEVK-ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELkELKEKAEE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 315 TELIQKDMDitlvrKELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVlrnqedvhtaesisyqklyNELHICFETT 394
Cdd:PRK03918 295 YIKLSEFYE-----EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL-------------------EELKKKLKEL 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 395 KSNEAMLRQSVTNLQDqLLQKEQENAKLKEKLQESqgaplplpqesdpdysaqvphrpSLSSLETLMVSQKSEIEYLQEK 474
Cdd:PRK03918 351 EKRLEELEERHELYEE-AKAKKEELERLKKRLTGL-----------------------TPEKLEKELEELEKAKEEIEEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 475 LKIANEKLSEnISANKGFSRKSIMTSAEGKHKEPPVKRSrslspkssFTDSEELQKLRKAERKIENLEKALQLKSQENDE 554
Cdd:PRK03918 407 ISKITARIGE-LKKEIKELKKAIEELKKAKGKCPVCGRE--------LTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 555 LRdaheKRKERLQMLQTN------YRAVKEQLKQWEEGSGMTEIRKIKRAdpqqlrqedsdavWNELAYFKRENQELMIQ 628
Cdd:PRK03918 478 LR----KELRELEKVLKKeselikLKELAEQLKELEEKLKKYNLEELEKK-------------AEEYEKLKEKLIKLKGE 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 629 KMNLEEELDELKVHISiDKAAIQELNRCVAERREEQL-------FRSGEDDEVKRSTPEKNGKEMLEqTLQKVTELENRL 701
Cdd:PRK03918 541 IKSLKKELEKLEELKK-KLAELEKKLDELEEELAELLkeleelgFESVEELEERLKELEPFYNEYLE-LKDAEKELEREE 618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 702 KSFEKRSRKLKEGNKKLMKENDFLKSLlkqqqedtetrEKELEQiiKGSKDVEKENTELQVKISELETEVTSLRRQVAEA 781
Cdd:PRK03918 619 KELKKLEEELDKAFEELAETEKRLEEL-----------RKELEE--LEKKYSEEEYEELREEYLELSRELAGLRAELEEL 685
|
650 660
....*....|....*....|....*..
gi 110815815 782 NALRNENEELINPMEKSHQSADRAKSE 808
Cdd:PRK03918 686 EKRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
129-356 |
2.55e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 129 LWKRLQVTNPDLTQVVSLVVEREKQKSEAKDRKVLEILQVKdAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEF 208
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE-AQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 209 SDLEKKFKDKSQEIKDTKECVQNKEEQ---NRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTF 285
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDiesLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 110815815 286 EDNLIEARKEVEVSQSKYNALSLQLSN-KQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQ 356
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGlEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
526-664 |
3.92e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 526 EELQKLRKAERKIENLEKALQLKSQENDELRDAHEKR---------KERLQMLQTNYRAVKEQLKQWEEGsgMTEIRKIK 596
Cdd:COG4717 92 ELQEELEELEEELEELEAELEELREELEKLEKLLQLLplyqelealEAELAELPERLEELEERLEELREL--EEELEELE 169
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110815815 597 ------RADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQ 664
Cdd:COG4717 170 aelaelQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
229-430 |
4.18e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 229 VQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQE--AHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNAL 306
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 307 SLQLSNKQTEL--IQKDMDITLVRKELQELQnlykqnsthtAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLY 384
Cdd:COG3206 246 RAQLGSGPDALpeLLQSPVIQQLRAQLAELE----------AELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 110815815 385 NELHICFETTKSNEAMLRQSVTNLQDQLL---QKEQENAKLKEKLQESQ 430
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLAelpELEAELRRLEREVEVAR 364
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
263-778 |
8.42e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 8.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 263 KLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSL---QLSNKQTELIQKDMDITLVRKELQELQNLYK 339
Cdd:pfam05483 82 KLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFeneKVSLKLEEEIQENKDLIKENNATRHLCNLLK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 340 QNSTHTAQQA--------ELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQ 411
Cdd:pfam05483 162 ETCARSAEKTkkyeyereETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQ 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 412 ----LLQKEQENAKLKEklqesqgaplplpqesdpdysaqvphrpslssLETLMVSQKSEIEYLQEKLKIANEKLSENIS 487
Cdd:pfam05483 242 vsllLIQITEKENKMKD--------------------------------LTFLLEESRDKANQLEEKTKLQDENLKELIE 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 488 ANKGFSRKSimtsaegkhKEPPVKRSRSLSPKSSFTDSEEL------QKLRKAERKIENLEKALQLKSQENDELRDAHEK 561
Cdd:pfam05483 290 KKDHLTKEL---------EDIKMSLQRSMSTQKALEEDLQIatkticQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCS 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 562 RKERLQMLQTNYRAVKEQLKQWEegsgMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKv 641
Cdd:pfam05483 361 LEELLRTEQQRLEKNEDQLKIIT----MELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELK- 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 642 hisidkAAIQELNRCVAERREEQlfrsgEDDEVKRSTPEKNGKEMLEQTLQKVTELEN-RLKSFE--KRSRKLKEGNKKL 718
Cdd:pfam05483 436 ------GKEQELIFLLQAREKEI-----HDLEIQLTAIKTSEEHYLKEVEDLKTELEKeKLKNIEltAHCDKLLLENKEL 504
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 719 MKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQV 778
Cdd:pfam05483 505 TQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEV 564
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
173-359 |
8.47e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 8.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 173 IQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQnrlvIKNLEEENKKLST 252
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ----IKKLQQEKELLEK 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 253 RCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQ 332
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
170 180
....*....|....*....|....*..
gi 110815815 333 ELQNlykQNSTHTAQQAELIQQLQVLN 359
Cdd:TIGR04523 507 ELEE---KVKDLTKKISSLKEKIEKLE 530
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
502-787 |
8.73e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 8.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 502 EGKHKEPPVKRSRSLSPKSSFTDSEelqklrkAERKIENLEKALQLKsQENDELRDAHEKRKERLQMLQTnyravkeqlk 581
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEE-------IERYEEQREQARETR-DEADEVLEEHEERREELETLEA---------- 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 582 qweegsgmtEIRKIkradpqqlrQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQElnrcVAERR 661
Cdd:PRK02224 259 ---------EIEDL---------RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA----VEARR 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 662 EEQlfrSGEDDEVKRStpekngkemLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETR-- 739
Cdd:PRK02224 317 EEL---EDRDEELRDR---------LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRre 384
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 110815815 740 -----EKELEQIIKG--------------SKDVEKENTELQVKISELETEVTSLRRQVAEANALRNE 787
Cdd:PRK02224 385 eieelEEEIEELRERfgdapvdlgnaedfLEELREERDELREREAELEATLRTARERVEEAEALLEA 451
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
584-1361 |
1.08e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 584 EEGSGMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEE----ELDELKVHISIDKAAIQELNRCVAE 659
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKAleyyQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 660 RREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNK--------KLMKENDFLKSLLKQ 731
Cdd:pfam02463 239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEeelksellKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 732 QQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMAT 811
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 812 MKVRSGRYDCK----------TTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWEDVSESSSDSEAQTSQ 881
Cdd:pfam02463 399 LKSEEEKEAQLllelarqledLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 882 TLGTIIVETSQKISPTEDGKDQKESDPTEDSQTQGKEIVQTYLNiDGKTPKDYFHDKNAKKPTFQKKNCkmqksshTAVP 961
Cdd:pfam02463 479 LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGG-RIISAHGRLGDLGVAVENYKVAIS-------TAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 962 TRVNREKYKNITAQKSSSNIILLRERIISLQQQNSVLQNAKKTaeLSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLN 1041
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS--IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGI 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1042 LDLAGLRKEKEDLLKKLESSSEITSLAEENSQVTFpriQVTSLSPSRSMDLEMKQLQYKLKNATNELTKQSSNVKTLKFE 1121
Cdd:pfam02463 629 LKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSE---VKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1122 LLAKEEHIKEMHEKISRMERDITMKRHLI--EDLKFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRL 1199
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKIneELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1200 NVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEI--ETAASKQLQELALQSEQVLEGAQKTLLLANEKV 1277
Cdd:pfam02463 786 LKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIkeEELEELALELKEEQKLEKLAEEELERLEEEITK 865
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1278 EEFTTFVKALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDTEDQVEIEKTKIDAE 1357
Cdd:pfam02463 866 EELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEA 945
|
....
gi 110815815 1358 NDKE 1361
Cdd:pfam02463 946 DEKE 949
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1093-1292 |
1.12e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1093 EMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHE-------KISRMERDITMKRHLIEDLKFRQKVNLESNK 1165
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAeeyellaELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1166 SFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIE 1245
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 110815815 1246 TAASKQLQELALQSEQVLEGAQKTLLLANEKVEEFTTFVKALAKELQ 1292
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1047-1397 |
1.27e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1047 LRKEKEDLLKKLESSSEITSLAEENSQVTFPRIQVTSLSPSRSMDLEMKQlqYKLKNATNELTKQSSNVKTLKFELLAKE 1126
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL--EKLEKEVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1127 EHIKEMHEKISRMERDITMKRHLIEDLKFRQKvNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEK 1206
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVK-ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1207 SQYEQMyqksKEELEKKDLKLTLLVSRISETESAMAEIETAASKQLQ------ELALQSEQVLEGAQKTLLLANEKVEEF 1280
Cdd:PRK03918 331 KELEEK----EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEElerlkkRLTGLTPEKLEKELEELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1281 TTFVKALAKELQNDVHVVRRQIRELKKMKKNRDACK---TSTHKAQTLAASILNISR--SDLEEILDTEDQVEIEKTKID 1355
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGrelTEEHRKELLEEYTAELKRieKELKEIEEKERKLRKELRELE 486
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 110815815 1356 AENDKEWMLYIQKLLEGQLPFASYLLEAV-LEKINEKKKLVEG 1397
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKLKKYnLEELEKKAEEYEK 529
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1122-1357 |
1.47e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1122 LLAKEEHIKEMHEKISRMERDITMKRHLIEDLKfrqkvnlesnKSFSEMLQNLDKKVKTLTEecsnKKVSIDSLKQRLNV 1201
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELR----------KELEELEEELEQLRKELEE----LSRQISALRKDLAR 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1202 AVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIEtAASKQLQELALQSEQVLEGAQKTLLLANEKVEEft 1281
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE-AEIEELEAQIEQLKEELKALREALDELRAELTL-- 814
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 110815815 1282 tfVKALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDTEDQVEIEKTKIDAE 1357
Cdd:TIGR02168 815 --LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1037-1304 |
1.62e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1037 IKKLN-LDLAGLRKEKEDLLKKLESSS--EITSLAEEnsqvtfprIQVTSLSPSRSMDLEMKQLQYKLKNATNELTKQSS 1113
Cdd:PRK05771 3 PVRMKkVLIVTLKSYKDEVLEALHELGvvHIEDLKEE--------LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLRE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1114 NVKTLKFELLAK------------EEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNLE-----SNKSFSEMLQNLDK 1176
Cdd:PRK05771 75 EKKKVSVKSLEElikdveeelekiEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDlslllGFKYVSVFVGTVPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1177 KVKTLTEECSNKKVS--IDSLKQRLNVA-VKEKSQYEQMYQ----------------KSKEELEKKDLKLTLLVSRISET 1237
Cdd:PRK05771 155 DKLEELKLESDVENVeyISTDKGYVYVVvVVLKELSDEVEEelkklgferleleeegTPSELIREIKEELEEIEKERESL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1238 ESAMAEIetaaSKQLQELALQSEQVLEG-AQKTLLLANEK-------------VEEFTTFVKALAKELQNDVHVVRRQIR 1303
Cdd:PRK05771 235 LEELKEL----AKKYLEELLALYEYLEIeLERAEALSKFLktdktfaiegwvpEDRVKKLKELIDKATGGSAYVEFVEPD 310
|
.
gi 110815815 1304 E 1304
Cdd:PRK05771 311 E 311
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
157-320 |
1.64e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 157 AKDRKVLEILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQN 236
Cdd:COG1579 3 PEDLRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 237 RLVIKN-----LEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLS 311
Cdd:COG1579 83 GNVRNNkeyeaLQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE 162
|
....*....
gi 110815815 312 NKQTELIQK 320
Cdd:COG1579 163 AEREELAAK 171
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1009-1360 |
1.81e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1009 VKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLKKLESSSEITSLAeensqvtfpriQVTSLSPSR 1088
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYE-----------GYELLKEKE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1089 SMDLEMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRM--ERDITMKRHlIEDLKFRQKvNLESNKS 1166
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRVKEK-IGELEAEIA-SLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1167 FSEM-LQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEkkdlkltLLVSRISETESAMAEIE 1245
Cdd:TIGR02169 312 EKEReLEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELE-------DLRAELEEVDKEFAETR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1246 TAASKQLQEL-ALQSE-QVLEGAQKTLLLANEKVEEfttfvkALAkELQNDVHVVRRQIRELK-KMKKNRDACKTSTHKA 1322
Cdd:TIGR02169 385 DELKDYREKLeKLKREiNELKRELDRLQEELQRLSE------ELA-DLNAAIAGIEAKINELEeEKEDKALEIKKQEWKL 457
|
330 340 350
....*....|....*....|....*....|....*...
gi 110815815 1323 QTLAAsILNISRSDLEEILDTEDQVEIEKTKIDAENDK 1360
Cdd:TIGR02169 458 EQLAA-DLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
529-663 |
1.84e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 529 QKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEgsgmteirKIKRADPQQLR---Q 605
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEA--------RIKKYEEQLGNvrnN 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 110815815 606 EDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREE 663
Cdd:COG1579 89 KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE 146
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
530-813 |
2.09e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 530 KLRKAERKIENLEKALQLKSQENDELRDAHEK-RKERLQMLQtnYRAVKEQLKQWEegsgMTEIRKIKRADPQQLRQEDS 608
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERlRREREKAER--YQALLKEKREYE----GYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 609 davwnelayfkrenqelmiQKMNLEEELDELKVHISIDKAAIQELNRcVAERREEQLFRSGEDDEVKRSTPEKNGKEMLE 688
Cdd:TIGR02169 245 -------------------QLASLEEELEKLTEEISELEKRLEEIEQ-LLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 689 QTLQKVTELENRLKSFEKRSRKLKEgnkklmkENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELE 768
Cdd:TIGR02169 305 SLERSIAEKERELEDAEERLAKLEA-------EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD 377
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 110815815 769 TEVTSLRRQVAEA----NALRNENEELINPMEKSHQSADRAKSEMATMK 813
Cdd:TIGR02169 378 KEFAETRDELKDYreklEKLKREINELKRELDRLQEELQRLSEELADLN 426
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1022-1274 |
2.85e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1022 QQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLKKLESSseitslaeensqvtfpriqvtslspsrsmDLEMKQLQYKL 1101
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----------------------------ERRIAALARRI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1102 KNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDI-TMKRHLIEDLKFRQKVNLESNKSFsEMLQNLDKKVKT 1180
Cdd:COG4942 72 RALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRL-QYLKYLAPARRE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1181 LTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEK----KDLKLTLLVSRISETESAMAEIETAAsKQLQELA 1256
Cdd:COG4942 151 QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEAlkaeRQKLLARLEKELAELAAELAELQQEA-EELEALI 229
|
250
....*....|....*...
gi 110815815 1257 LQSEQVLEGAQKTLLLAN 1274
Cdd:COG4942 230 ARLEAEAAAAAERTPAAG 247
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
533-813 |
3.17e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 533 KAERKIENLEKA-LQLKSQ-----ENDELRDAHEKRKERLQmlqTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLRQE 606
Cdd:PRK04863 349 KIERYQADLEELeERLEEQnevveEADEQQEENEARAEAAE---EEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 607 DSDavWNELAYFKRENQELMI-----QKMNLEEELDELKVHISIDKAAiqelnrcvAERREE--QLFRSGEDdEVKRSTP 679
Cdd:PRK04863 426 AKQ--LCGLPDLTADNAEDWLeefqaKEQEATEELLSLEQKLSVAQAA--------HSQFEQayQLVRKIAG-EVSRSEA 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 680 EKNGKEMLEQ------TLQKVTELENRLKSFEKRSRK-------LKEGNKKLMKE---NDFLKSLLKQQQEDTETREKEL 743
Cdd:PRK04863 495 WDVARELLRRlreqrhLAEQLQQLRMRLSELEQRLRQqqraerlLAEFCKRLGKNlddEDELEQLQEELEARLESLSESV 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 744 EQIIKGSKDVEKENTELQVKISELETE----------VTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATMK 813
Cdd:PRK04863 575 SEARERRMALRQQLEQLQARIQRLAARapawlaaqdaLARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARK 654
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1093-1269 |
3.25e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 3.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1093 EMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVN---------LES 1163
Cdd:COG3883 31 ELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSggsvsyldvLLG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1164 NKSFSEMLQNLD------KKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISET 1237
Cdd:COG3883 111 SESFSDFLDRLSalskiaDADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAE 190
|
170 180 190
....*....|....*....|....*....|..
gi 110815815 1238 ESAMAEIETAASKQLQELALQSEQVLEGAQKT 1269
Cdd:COG3883 191 EAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
671-797 |
3.62e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 671 DDEVKRSTPEKNGKEMLEqtlqkVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIikgs 750
Cdd:COG2433 383 EELIEKELPEEEPEAERE-----KEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA---- 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 110815815 751 KDVEKENTELQVKISELETEVTSLRRQVAEanaLRNENEELINPMEK 797
Cdd:COG2433 454 RSEERREIRKDREISRLDREIERLERELEE---ERERIEELKRKLER 497
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
625-793 |
4.00e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 625 LMIQKMN------LEEELDELkvhisidkaaIQELnrcvaerREEQLFrsgE-DDEVKRSTPEKNGKemLEQTLQKVTEL 697
Cdd:PRK05771 1 LAPVRMKkvlivtLKSYKDEV----------LEAL-------HELGVV---HiEDLKEELSNERLRK--LRSLLTKLSEA 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 698 ENRLKSFEKRSRKLKEGNKKLmkendflksllkqqqedtetREKELEQIIKGSK----DVEKENTELQVKISELETEVTS 773
Cdd:PRK05771 59 LDKLRSYLPKLNPLREEKKKV--------------------SVKSLEELIKDVEeeleKIEKEIKELEEEISELENEIKE 118
|
170 180
....*....|....*....|
gi 110815815 774 LRRQVAEANALRNENEELIN 793
Cdd:PRK05771 119 LEQEIERLEPWGNFDLDLSL 138
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
526-816 |
5.00e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 526 EELQKLRK--AERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMT-----EIRKIKRA 598
Cdd:PRK03918 372 EELERLKKrlTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrELTEEHRK 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 599 DPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAA--IQELNRCVAERREEQLFRSGEDDEVKR 676
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAeqLKELEEKLKKYNLEELEKKAEEYEKLK 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 677 STPEKNGKEM--LEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKEndfLKSLLKQQQEDTETREKELEQIIK---GSK 751
Cdd:PRK03918 532 EKLIKLKGEIksLKKELEKLEELKKKLAELEKKLDELEEELAELLKE---LEELGFESVEELEERLKELEPFYNeylELK 608
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 110815815 752 DVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATMKVRS 816
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1092-1361 |
5.64e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 5.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1092 LEMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKfrqkvnlesnksfsEML 1171
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ--------------AEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1172 QNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIETAASKQ 1251
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 1252 LQELALQSEQVLEGAQKTLLLANEKVEEfttfvkalAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILN 1331
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAEL--------AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270
....*....|....*....|....*....|
gi 110815815 1332 ISRSDLEEILDTEDQVEIEKTKIDAENDKE 1361
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
153-358 |
5.70e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 5.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 153 QKSEAKDRKVLEILQVKDAKIQEFEQRESVLKQEINDLvkrkiavDEENAFLRKEFSDLEKKFK---DKSQEIKDTKECV 229
Cdd:pfam07888 48 QAQEAANRQREKEKERYKRDREQWERQRRELESRVAEL-------KEELRQSREKHEELEEKYKelsASSEELSEEKDAL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 230 QNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLR---KQEAHLRKEKYSTDAKIKTfednliearkEVEVSQSKYNAL 306
Cdd:pfam07888 121 LAQRAAHEARIRELEEDIKTLTQRVLERETELERMKeraKKAGAQRKEEEAERKQLQA----------KLQQTEEELRSL 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 110815815 307 SLQLSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVL 358
Cdd:pfam07888 191 SKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSL 242
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
605-810 |
6.03e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 605 QEDSDAVWNELAYFKRENQELMIQKmnLEEELDELKVHISIDKAAIQELNrcvAERREEQLFRSGEDDEVKRStpekngK 684
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEE--LEAELEELEAELEELEAELAELE---AELEELRLELEELELELEEA------Q 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 685 EMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKI 764
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 110815815 765 SELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMA 810
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
145-663 |
7.02e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 145 SLVVEREKQKSEAKDRKVLEILQVKDAKIQEFEQRESvLKQEINDLVKRKIAVDEENAFLRKE--FSDLEKK-FKDKSQE 221
Cdd:PRK02224 240 DEVLEEHEERREELETLEAEIEDLRETIAETEREREE-LAEEVRDLRERLEELEEERDDLLAEagLDDADAEaVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 222 IKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQS 301
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 302 KYNALSLQLSNKQTELiqkdmdiTLVRKELQELQNlykqnsthtaQQAELIQQLQVLNMDTQKVLRNQEDVHTAESisYQ 381
Cdd:PRK02224 399 RFGDAPVDLGNAEDFL-------EELREERDELRE----------REAELEATLRTARERVEEAEALLEAGKCPEC--GQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 382 KLYNELHICFETTKsneamlRQSVTNLQDQLLQKEQENAKLKEKLQEsqgaplplpqesdpdysaqvphrpslssLETLm 461
Cdd:PRK02224 460 PVEGSPHVETIEED------RERVEELEAELEDLEEEVEEVEERLER----------------------------AEDL- 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 462 VSQKSEIEYLQEKLKIANEKLSENIS---------ANKGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEelQKLR 532
Cdd:PRK02224 505 VEAEDRIERLEERREDLEELIAERREtieekreraEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN--SKLA 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 533 KAERKIENLEKALQLKSqENDELRDAHEKRKERLQMLQTNYRAVKEQLKQweegsgmteirkiKRADPQQLRQE-DSDAV 611
Cdd:PRK02224 583 ELKERIESLERIRTLLA-AIADAEDEIERLREKREALAELNDERRERLAE-------------KRERKRELEAEfDEARI 648
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 110815815 612 wnELAYFKRENQELMIQKMN-----LEEELDELKVHISIDKAAIQELNRcVAERREE 663
Cdd:PRK02224 649 --EEAREDKERAEEYLEQVEekldeLREERDDLQAEIGAVENELEELEE-LRERREA 702
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
205-792 |
7.33e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 7.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 205 RKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLR----KQEAHLRKEKYSTDA 280
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTqkreAQEEQLKKQQLLKQL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 281 KIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQ----ELQNLYKQNSTHTAQQAELIQQLQ 356
Cdd:TIGR00618 266 RARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQskmrSRAKLLMKRAAHVKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 357 VLNMDTQKVLRNQEdvhtaesisyqklYNELHICFETTKSNEAMLRQSVTNLQDQ---LLQKEQENAKLKEKLQESQGAP 433
Cdd:TIGR00618 346 LLQTLHSQEIHIRD-------------AHEVATSIREISCQQHTLTQHIHTLQQQkttLTQKLQSLCKELDILQREQATI 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 434 LPLPQESDPD----YSAQVPHRPSLSSLETLMV-------SQKSEIEYLQE-----KLKIANEKLSENISANKGFSRKSI 497
Cdd:TIGR00618 413 DTRTSAFRDLqgqlAHAKKQQELQQRYAELCAAaitctaqCEKLEKIHLQEsaqslKEREQQLQTKEQIHLQETRKKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 498 MTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQ----KLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNY 573
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIHPNPARQDIDNPGpltrRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 574 RAVKEQLKQWEEGSGMT--EIRKIKRADPQQLRQEDSDAVWNELAYFKRE----NQELMIQKMNLEEELDELKVH----- 642
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLqnITVRLQDLTEKLSEAEDMLACEQHALLRKLQpeqdLQDVRLHLQQCSQELALKLTAlhalq 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 643 --ISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVTELENRLKS----FEKRSRKLKEGNK 716
Cdd:TIGR00618 653 ltLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEydreFNEIENASSSLGS 732
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 110815815 717 KLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELI 792
Cdd:TIGR00618 733 DLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEI 808
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
490-640 |
7.80e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 7.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110815815 490 KGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKalqlksqENDELRDAHEKRKERLQML 569
Cdd:COG2433 374 RGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEA-------EVEELEAELEEKDERIERL 446
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110815815 570 QTNYRAVKEqlkqwEEGSGMTEIRKIKRadpqqlRQEDSDAVWNELAYFKRENQElmiqkmnLEEELDELK 640
Cdd:COG2433 447 ERELSEARS-----EERREIRKDREISR------LDREIERLERELEEERERIEE-------LKRKLERLK 499
|
|
| |
