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Conserved domains on  [gi|117168297|ref|NP_034760|]
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kinesin-like protein KIFC2 isoform 1 precursor [Mus musculus]

Protein Classification

kinesin family protein( domain architecture ID 10102659)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; similar to carboxy-terminal kinesins that contains a C-terminal domain responsible for the motor activity (it hydrolyzes ATP and binds microtubules)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
407-734 1.01e-162

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 474.39  E-value: 1.01e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 407 KGNIRVLCRLRPA----EGQPSSLVSVEPGQGGTITTCYRG-RQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVC 481
Cdd:cd01366    1 KGNIRVFCRVRPLlpseENEDTSHITFPDEDGQTIELTSIGaKQKEFSFDKVFDPEASQEDVFEEVSPLVQSALDGYNVC 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 482 IFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGT----GGHHHVTLSMVEIYNEAVRDLLATG--PPERLVVRQGP 555
Cdd:cd01366   81 IFAYGQTGSGKTYTMEGPPESPGIIPRALQELFNTIKElkekGWSYTIKASMLEIYNETIRDLLAPGnaPQKKLEIRHDS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 556 AgQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSER 635
Cdd:cd01366  161 E-KGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGKLNLVDLAGSER 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 636 VWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAED 715
Cdd:cd01366  240 LNKSGAT---------GDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAESN 310
                        330
                 ....*....|....*....
gi 117168297 716 LGETICSLKFAERVGQVEL 734
Cdd:cd01366  311 LNETLNSLRFASKVNSCEL 329
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
270-345 3.23e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.08  E-value: 3.23e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 117168297 270 QEEAGALLELQGQLQEAQDTTEALRVQLGAQELQLQGLQGALRQLQQETEQnCRQELQQVHGQLAGLRARMASLRQ 345
Cdd:COG1196  249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR-LEQDIARLEERRRELEERLEELEE 323
 
Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
407-734 1.01e-162

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 474.39  E-value: 1.01e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 407 KGNIRVLCRLRPA----EGQPSSLVSVEPGQGGTITTCYRG-RQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVC 481
Cdd:cd01366    1 KGNIRVFCRVRPLlpseENEDTSHITFPDEDGQTIELTSIGaKQKEFSFDKVFDPEASQEDVFEEVSPLVQSALDGYNVC 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 482 IFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGT----GGHHHVTLSMVEIYNEAVRDLLATG--PPERLVVRQGP 555
Cdd:cd01366   81 IFAYGQTGSGKTYTMEGPPESPGIIPRALQELFNTIKElkekGWSYTIKASMLEIYNETIRDLLAPGnaPQKKLEIRHDS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 556 AgQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSER 635
Cdd:cd01366  161 E-KGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGKLNLVDLAGSER 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 636 VWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAED 715
Cdd:cd01366  240 LNKSGAT---------GDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAESN 310
                        330
                 ....*....|....*....
gi 117168297 716 LGETICSLKFAERVGQVEL 734
Cdd:cd01366  311 LNETLNSLRFASKVNSCEL 329
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
409-735 2.50e-127

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 383.46  E-value: 2.50e-127
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297   409 NIRVLCRLRPAEGQPS-----SLVSVEPGQGGTITTCY---RGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYS 479
Cdd:smart00129   1 NIRVVVRVRPLNKREKsrkspSVVPFPDKVGKTLTVRSpknRQGEKKFTFDKVFDATASQEDVFEETaAPLVDSVLEGYN 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297   480 VCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFR---EMGTGGHHHVTLSMVEIYNEAVRDLLATGPPERLVVRQgpa 556
Cdd:smart00129  81 ATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEkidKREEGWQFSVKVSYLEIYNEKIRDLLNPSSKKLEIRED--- 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297   557 GQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRA--QGITGTLHLVDLAGSE 634
Cdd:smart00129 158 EKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSsgSGKASKLNLVDLAGSE 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297   635 RVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRA--RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTR 712
Cdd:smart00129 238 RAKKTG---------AEGDRLKEAGNINKSLSALGNVINALAQhsKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPS 308
                          330       340
                   ....*....|....*....|...
gi 117168297   713 AEDLGETICSLKFAERVGQVELG 735
Cdd:smart00129 309 SSNLEETLSTLRFASRAKEIKNK 331
Kinesin pfam00225
Kinesin motor domain;
415-732 6.76e-124

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 374.60  E-value: 6.76e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  415 RLRPA--------EGQPSSLVSVEPGQGGTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCIFTY 485
Cdd:pfam00225   1 RVRPLnerekergSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETaKPLVESVLEGYNVTIFAY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  486 GQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTGGHH---HVTLSMVEIYNEAVRDLLATGPPERLVVRQGPAGQGGIQ 562
Cdd:pfam00225  81 GQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERsefSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  563 VAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRA---ASPPRAQGITGTLHLVDLAGSERVWKA 639
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQrnrSTGGEESVKTGKLNLVDLAGSERASKT 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  640 GVAspvqrdpnGARRLREAQAINRSLLALGGVMAALRA-RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGE 718
Cdd:pfam00225 241 GAA--------GGQRLKEAANINKSLSALGNVISALADkKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEE 312
                         330
                  ....*....|....
gi 117168297  719 TICSLKFAERVGQV 732
Cdd:pfam00225 313 TLSTLRFASRAKNI 326
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
387-728 1.65e-59

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 211.91  E-value: 1.65e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 387 QLSEGNQAPPTGCSGRLLELKGNIRVLCRLRPaEGQPSSLVSVEPGQGGTITTCYRGRqhrFRLDWVFPQDASQEEVFRQ 466
Cdd:COG5059    1 QSSDNNSPLKSRLSSRNEKSVSDIKSTIRIIP-GELGERLINTSKKSHVSLEKSKEGT---YAFDKVFGPSATQEDVYEE 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 467 LEPAVL-SCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREM---GTGGHHHVTLSMVEIYNEAVRDLLA 542
Cdd:COG5059   77 TIKPLIdSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLedlSMTKDFAVSISYLEIYNEKIYDLLS 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 543 TGPPERLVVRQgpaGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLraASPPRAQGI- 621
Cdd:COG5059  157 PNEESLNIRED---SLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIEL--ASKNKVSGTs 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 622 -TGTLHLVDLAGSERVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRP--HVPFRDSQLTRLLQPALC 698
Cdd:COG5059  232 eTSKLSLVDLAGSERAARTG---------NRGTRLKEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDSLG 302
                        330       340       350
                 ....*....|....*....|....*....|
gi 117168297 699 AGTTAVLLLQISTRAEDLGETICSLKFAER 728
Cdd:COG5059  303 GNCNTRVICTISPSSNSFEETINTLKFASR 332
PLN03188 PLN03188
kinesin-12 family protein; Provisional
410-728 9.89e-42

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 165.11  E-value: 9.89e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  410 IRVLCRLRPAEGQPSSLVSVEPGQGGTITTcyrgRQHRFRLDWVFPQDASQEEVFrQL--EPAVLSCLQGYSVCIFTYGQ 487
Cdd:PLN03188  100 VKVIVRMKPLNKGEEGEMIVQKMSNDSLTI----NGQTFTFDSIADPESTQEDIF-QLvgAPLVENCLAGFNSSVFAYGQ 174
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  488 TGTGKTYSMEGPP----------EDPGIAPRALQLLFREMGTGGHHHVT--------LSMVEIYNEAVRDLLatGPPER- 548
Cdd:PLN03188  175 TGSGKTYTMWGPAnglleehlsgDQQGLTPRVFERLFARINEEQIKHADrqlkyqcrCSFLEIYNEQITDLL--DPSQKn 252
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  549 LVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGI----TGT 624
Cdd:PLN03188  253 LQIREDV--KSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLssfkTSR 330
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  625 LHLVDLAGSERVWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAAL-----RARRPHVPFRDSQLTRLLQPALCA 699
Cdd:PLN03188  331 INLVDLAGSERQKLTGAA---------GDRLKEAGNINRSLSQLGNLINILaeisqTGKQRHIPYRDSRLTFLLQESLGG 401
                         330       340
                  ....*....|....*....|....*....
gi 117168297  700 GTTAVLLLQISTRAEDLGETICSLKFAER 728
Cdd:PLN03188  402 NAKLAMVCAISPSQSCKSETFSTLRFAQR 430
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
270-345 3.23e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.08  E-value: 3.23e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 117168297 270 QEEAGALLELQGQLQEAQDTTEALRVQLGAQELQLQGLQGALRQLQQETEQnCRQELQQVHGQLAGLRARMASLRQ 345
Cdd:COG1196  249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR-LEQDIARLEERRRELEERLEELEE 323
 
Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
407-734 1.01e-162

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 474.39  E-value: 1.01e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 407 KGNIRVLCRLRPA----EGQPSSLVSVEPGQGGTITTCYRG-RQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVC 481
Cdd:cd01366    1 KGNIRVFCRVRPLlpseENEDTSHITFPDEDGQTIELTSIGaKQKEFSFDKVFDPEASQEDVFEEVSPLVQSALDGYNVC 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 482 IFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGT----GGHHHVTLSMVEIYNEAVRDLLATG--PPERLVVRQGP 555
Cdd:cd01366   81 IFAYGQTGSGKTYTMEGPPESPGIIPRALQELFNTIKElkekGWSYTIKASMLEIYNETIRDLLAPGnaPQKKLEIRHDS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 556 AgQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSER 635
Cdd:cd01366  161 E-KGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGKLNLVDLAGSER 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 636 VWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAED 715
Cdd:cd01366  240 LNKSGAT---------GDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAESN 310
                        330
                 ....*....|....*....
gi 117168297 716 LGETICSLKFAERVGQVEL 734
Cdd:cd01366  311 LNETLNSLRFASKVNSCEL 329
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
409-735 2.50e-127

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 383.46  E-value: 2.50e-127
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297   409 NIRVLCRLRPAEGQPS-----SLVSVEPGQGGTITTCY---RGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYS 479
Cdd:smart00129   1 NIRVVVRVRPLNKREKsrkspSVVPFPDKVGKTLTVRSpknRQGEKKFTFDKVFDATASQEDVFEETaAPLVDSVLEGYN 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297   480 VCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFR---EMGTGGHHHVTLSMVEIYNEAVRDLLATGPPERLVVRQgpa 556
Cdd:smart00129  81 ATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEkidKREEGWQFSVKVSYLEIYNEKIRDLLNPSSKKLEIRED--- 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297   557 GQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRA--QGITGTLHLVDLAGSE 634
Cdd:smart00129 158 EKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSsgSGKASKLNLVDLAGSE 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297   635 RVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRA--RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTR 712
Cdd:smart00129 238 RAKKTG---------AEGDRLKEAGNINKSLSALGNVINALAQhsKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPS 308
                          330       340
                   ....*....|....*....|...
gi 117168297   713 AEDLGETICSLKFAERVGQVELG 735
Cdd:smart00129 309 SSNLEETLSTLRFASRAKEIKNK 331
Kinesin pfam00225
Kinesin motor domain;
415-732 6.76e-124

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 374.60  E-value: 6.76e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  415 RLRPA--------EGQPSSLVSVEPGQGGTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCIFTY 485
Cdd:pfam00225   1 RVRPLnerekergSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETaKPLVESVLEGYNVTIFAY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  486 GQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTGGHH---HVTLSMVEIYNEAVRDLLATGPPERLVVRQGPAGQGGIQ 562
Cdd:pfam00225  81 GQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERsefSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  563 VAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRA---ASPPRAQGITGTLHLVDLAGSERVWKA 639
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQrnrSTGGEESVKTGKLNLVDLAGSERASKT 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  640 GVAspvqrdpnGARRLREAQAINRSLLALGGVMAALRA-RRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGE 718
Cdd:pfam00225 241 GAA--------GGQRLKEAANINKSLSALGNVISALADkKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEE 312
                         330
                  ....*....|....
gi 117168297  719 TICSLKFAERVGQV 732
Cdd:pfam00225 313 TLSTLRFASRAKNI 326
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
409-729 2.77e-103

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 321.13  E-value: 2.77e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 409 NIRVLCRLRPAEGQ----PSSLVSVEPGQGGTITTCYRGRQ--HRFRLDWVFPQDASQEEVFRQLEPAVL-SCLQGYSVC 481
Cdd:cd00106    1 NVRVAVRVRPLNGRearsAKSVISVDGGKSVVLDPPKNRVAppKTFAFDAVFDSTSTQEEVYEGTAKPLVdSALEGYNGT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 482 IFTYGQTGTGKTYSMEG-PPEDPGIAPRALQLLFREMGTGGHH----HVTLSMVEIYNEAVRDLLATGPPERLVVRqgPA 556
Cdd:cd00106   81 IFAYGQTGSGKTYTMLGpDPEQRGIIPRALEDIFERIDKRKETkssfSVSASYLEIYNEKIYDLLSPVPKKPLSLR--ED 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 557 GQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAA--SPPRAQGITGTLHLVDLAGSE 634
Cdd:cd00106  159 PKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRnrEKSGESVTSSKLNLVDLAGSE 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 635 RVWKAGVASpvqrdpngaRRLREAQAINRSLLALGGVMAALRARR-PHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRA 713
Cdd:cd00106  239 RAKKTGAEG---------DRLKEGGNINKSLSALGKVISALADGQnKHIPYRDSKLTRLLQDSLGGNSKTIMIACISPSS 309
                        330
                 ....*....|....*.
gi 117168297 714 EDLGETICSLKFAERV 729
Cdd:cd00106  310 ENFEETLSTLRFASRA 325
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
410-728 7.60e-75

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 246.86  E-value: 7.60e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 410 IRVLCRLRP------AEGqPSSLVSVEPGQGGTITtcyrGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCI 482
Cdd:cd01372    3 VRVAVRVRPllpkeiIEG-CRICVSFVPGEPQVTV----GTDKSFTFDYVFDPSTEQEEVYNTCvAPLVDGLFEGYNATV 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 483 FTYGQTGTGKTYSM------EGPPEDPGIAPRALQLLFREMGTGGHHH---VTLSMVEIYNEAVRDLLATGPPER--LVV 551
Cdd:cd01372   78 LAYGQTGSGKTYTMgtaytaEEDEEQVGIIPRAIQHIFKKIEKKKDTFefqLKVSFLEIYNEEIRDLLDPETDKKptISI 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 552 RQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRA------ASPPRAQG----I 621
Cdd:cd01372  158 REDS--KGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQtkkngpIAPMSADDknstF 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 622 TGTLHLVDLAGSERVWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAAL---RARRPHVPFRDSQLTRLLQPALC 698
Cdd:cd01372  236 TSKFHFVDLAGSERLKRTGAT---------GDRLKEGISINSGLLALGNVISALgdeSKKGAHVPYRDSKLTRLLQDSLG 306
                        330       340       350
                 ....*....|....*....|....*....|
gi 117168297 699 AGTTAVLLLQISTRAEDLGETICSLKFAER 728
Cdd:cd01372  307 GNSHTLMIACVSPADSNFEETLNTLKYANR 336
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
409-732 8.11e-73

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 241.21  E-value: 8.11e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 409 NIRVLCRLRPAEGQP-----SSLVSVEPGQGGTITTCYRGRQHR----FRLDWVFPQDASQEEVFRQ-LEPAVLSCLQGY 478
Cdd:cd01371    2 NVKVVVRCRPLNGKEkaagaLQIVDVDEKRGQVSVRNPKATANEppktFTFDAVFDPNSKQLDVYDEtARPLVDSVLEGY 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 479 SVCIFTYGQTGTGKTYSMEG---PPEDPGIAPRALQLLFREMGTGGHHH---VTLSMVEIYNEAVRDLLATGPPERLVVR 552
Cdd:cd01371   82 NGTIFAYGQTGTGKTYTMEGkreDPELRGIIPNSFAHIFGHIARSQNNQqflVRVSYLEIYNEEIRDLLGKDQTKRLELK 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 553 QGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAAS--PPRAQGIT-GTLHLVD 629
Cdd:cd01371  162 ERP--DTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEkgEDGENHIRvGKLNLVD 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 630 LAGSERVWKAGVaspvqrdpnGARRLREAQAINRSLLALGGVMAAL-RARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQ 708
Cdd:cd01371  240 LAGSERQSKTGA---------TGERLKEATKINLSLSALGNVISALvDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCAN 310
                        330       340
                 ....*....|....*....|....
gi 117168297 709 ISTRAEDLGETICSLKFAERVGQV 732
Cdd:cd01371  311 IGPADYNYDETLSTLRYANRAKNI 334
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
409-728 2.49e-71

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 237.61  E-value: 2.49e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 409 NIRVLCRLRP---AEGQPSSLVSVE-PGQGGTITTCYRG-----RQHRFRLDWVFPQDASQEEVFRQ-LEPAVLSCLQGY 478
Cdd:cd01364    3 NIQVVVRCRPfnlRERKASSHSVVEvDPVRKEVSVRTGGladksSTKTYTFDMVFGPEAKQIDVYRSvVCPILDEVLMGY 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 479 SVCIFTYGQTGTGKTYSMEGP-----------PEDPGIAPRALQLLFREM-GTGGHHHVTLSMVEIYNEAVRDLLAT--G 544
Cdd:cd01364   83 NCTIFAYGQTGTGKTYTMEGDrspneeytwelDPLAGIIPRTLHQLFEKLeDNGTEYSVKVSYLEIYNEELFDLLSPssD 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 545 PPERLVVRQGPAGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAasppRAQGI--- 621
Cdd:cd01364  163 VSERLRMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHI----KETTIdge 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 622 ----TGTLHLVDLAGSERVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPAL 697
Cdd:cd01364  239 elvkIGKLNLVDLAGSENIGRSG---------AVDKRAREAGNINQSLLTLGRVITALVERAPHVPYRESKLTRLLQDSL 309
                        330       340       350
                 ....*....|....*....|....*....|.
gi 117168297 698 CAGTTAVLLLQISTRAEDLGETICSLKFAER 728
Cdd:cd01364  310 GGRTKTSIIATISPASVNLEETLSTLEYAHR 340
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
409-732 5.95e-69

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 230.29  E-value: 5.95e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 409 NIRVLCRLRP----AEGQPS-SLVSVEPGQggTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCI 482
Cdd:cd01369    3 NIKVVCRFRPlnelEVLQGSkSIVKFDPED--TVVIATSETGKTFSFDRVFDPNTTQEDVYNFAaKPIVDDVLNGYNGTI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 483 FTYGQTGTGKTYSMEGPPEDP---GIAPRALQLLF---REMGTGGHHHVTLSMVEIYNEAVRDLLAtgpPER--LVVRQg 554
Cdd:cd01369   81 FAYGQTSSGKTYTMEGKLGDPesmGIIPRIVQDIFetiYSMDENLEFHVKVSYFEIYMEKIRDLLD---VSKtnLSVHE- 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 555 pAGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGITGTLHLVDLAGSE 634
Cdd:cd01369  157 -DKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENVETEKKKSGKLYLVDLAGSE 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 635 RVWKAGVASPVqrdpngarrLREAQAINRSLLALGGVMAAL-RARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRA 713
Cdd:cd01369  236 KVSKTGAEGAV---------LDEAKKINKSLSALGNVINALtDGKKTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSS 306
                        330
                 ....*....|....*....
gi 117168297 714 EDLGETICSLKFAERVGQV 732
Cdd:cd01369  307 YNESETLSTLRFGQRAKTI 325
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
442-728 3.49e-67

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 226.46  E-value: 3.49e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 442 RGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTG 520
Cdd:cd01370   57 RNKELKYVFDRVFDETSTQEEVYEETtKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQEPGLMVLTMKELFKRIESL 136
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 521 GH---HHVTLSMVEIYNEAVRDLLaTGPPERLVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQ 597
Cdd:cd01370  137 KDekeFEVSMSYLEIYNETIRDLL-NPSSGPLELREDA--QNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANA 213
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 598 HSSRSHALVTLTLRAAspPRAQGIT-----GTLHLVDLAGSERvwkagvASPVQrdpNGARRLREAQAINRSLLALGGVM 672
Cdd:cd01370  214 TSSRSHAVLQITVRQQ--DKTASINqqvrqGKLSLIDLAGSER------ASATN---NRGQRLKEGANINRSLLALGNCI 282
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 117168297 673 AAL--RARRP-HVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGETICSLKFAER 728
Cdd:cd01370  283 NALadPGKKNkHIPYRDSKLTRLLKDSLGGNCRTVMIANISPSSSSYEETHNTLKYANR 341
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
409-728 6.28e-67

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 224.90  E-value: 6.28e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 409 NIRVLCRLRPAEGQ-------------PSSLVSVEPGQGgtittcyrgrqhRFRLDWVFPQDASQEEVFRQL-EPAVLSC 474
Cdd:cd01374    1 KITVTVRVRPLNSReigineqvaweidNDTIYLVEPPST------------SFTFDHVFGGDSTNREVYELIaKPVVKSA 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 475 LQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFR--EMGTGGHHHVTLSMVEIYNEAVRDLLAtGPPERLVVR 552
Cdd:cd01374   69 LEGYNGTIFAYGQTSSGKTFTMSGDEDEPGIIPLAIRDIFSkiQDTPDREFLLRVSYLEIYNEKINDLLS-PTSQNLKIR 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 553 QGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTL--RAASPPRAQGIT-GTLHLVD 629
Cdd:cd01374  148 DDV--EKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIesSERGELEEGTVRvSTLNLID 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 630 LAGSERVWKAGVAspvqrdpnGARRlREAQAINRSLLALGGVMAAL--RARRPHVPFRDSQLTRLLQPALCAGTTAVLLL 707
Cdd:cd01374  226 LAGSERAAQTGAA--------GVRR-KEGSHINKSLLTLGTVISKLseGKVGGHIPYRDSKLTRILQPSLGGNSRTAIIC 296
                        330       340
                 ....*....|....*....|.
gi 117168297 708 QISTRAEDLGETICSLKFAER 728
Cdd:cd01374  297 TITPAESHVEETLNTLKFASR 317
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
408-732 5.59e-66

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 223.38  E-value: 5.59e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 408 GNIRVLCRLRP-------------AEGQPSSLVSVEPGQGGTITTCYRGRQHRFRLDWVF-------PQDASQEEVFRQL 467
Cdd:cd01365    1 ANVKVAVRVRPfnsrekernskciVQMSGKETTLKNPKQADKNNKATREVPKSFSFDYSYwshdsedPNYASQEQVYEDL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 468 EPAVLS-CLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMG----TGGHHHVTLSMVEIYNEAVRDLLA 542
Cdd:cd01365   81 GEELLQhAFEGYNVCLFAYGQTGSGKSYTMMGTQEQPGIIPRLCEDLFSRIAdttnQNMSYSVEVSYMEIYNEKVRDLLN 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 543 ---TGPPERLVVRQGPAgqGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQ 619
Cdd:cd01365  161 pkpKKNKGNLKVREHPV--LGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHDAET 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 620 GITGT----LHLVDLAGSERVWKAGVaspvqrdpNGArRLREAQAINRSLLALGGVMAAL--------RARRPHVPFRDS 687
Cdd:cd01365  239 NLTTEkvskISLVDLAGSERASSTGA--------TGD-RLKEGANINKSLTTLGKVISALadmssgksKKKSSFIPYRDS 309
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 117168297 688 QLTRLLQPALCAGTTAVLLLQISTRAEDLGETICSLKFAERVGQV 732
Cdd:cd01365  310 VLTWLLKENLGGNSKTAMIAAISPADINYEETLSTLRYADRAKKI 354
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
409-729 2.03e-61

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 210.83  E-value: 2.03e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 409 NIRVLCRLRPAEGqpsslVSVEPGQG-------GTITTCYRGRQHRFRLDWVFPQDASQEEVFRQL-EPAVLSCLQGYSV 480
Cdd:cd01373    2 AVKVFVRIRPPAE-----REGDGEYGqclkklsSDTLVLHSKPPKTFTFDHVADSNTNQESVFQSVgKPIVESCLSGYNG 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 481 CIFTYGQTGTGKTYSMEGPPE--------DPGIAPRALQLLFREM-------GTGGHHHVTLSMVEIYNEAVRDLLatGP 545
Cdd:cd01373   77 TIFAYGQTGSGKTYTMWGPSEsdnesphgLRGVIPRIFEYLFSLIqrekekaGEGKSFLCKCSFLEIYNEQIYDLL--DP 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 546 PER-LVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRaaSPPRAQGITGT 624
Cdd:cd01373  155 ASRnLKLREDI--KKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIE--SWEKKACFVNI 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 625 ----LHLVDLAGSERvwkagvaspVQRDPNGARRLREAQAINRSLLALGGVMAAL----RARRPHVPFRDSQLTRLLQPA 696
Cdd:cd01373  231 rtsrLNLVDLAGSER---------QKDTHAEGVRLKEAGNINKSLSCLGHVINALvdvaHGKQRHVCYRDSKLTFLLRDS 301
                        330       340       350
                 ....*....|....*....|....*....|...
gi 117168297 697 LCAGTTAVLLLQISTRAEDLGETICSLKFAERV 729
Cdd:cd01373  302 LGGNAKTAIIANVHPSSKCFGETLSTLRFAQRA 334
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
410-729 3.47e-60

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 207.05  E-value: 3.47e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 410 IRVLCRLRPAEGQPSSLVSVEP-GQGGTI---TTCYRG------RQHRFRLDWVFpQDASQEEVFRQL-EPAVLSCLQGY 478
Cdd:cd01375    2 VQAFVRVRPTDDFAHEMIKYGEdGKSISIhlkKDLRRGvvnnqqEDWSFKFDGVL-HNASQELVYETVaKDVVSSALAGY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 479 SVCIFTYGQTGTGKTYSMEGPPE---DPGIAPRALQLLFREMGTGGHHHVT--LSMVEIYNEAVRDLLATGP------PE 547
Cdd:cd01375   81 NGTIFAYGQTGAGKTFTMTGGTEnykHRGIIPRALQQVFRMIEERPTKAYTvhVSYLEIYNEQLYDLLSTLPyvgpsvTP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 548 RLVVRQGPAgqgGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVT--LTLRAASPPRAQGITGTL 625
Cdd:cd01375  161 MTILEDSPQ---NIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTihLEAHSRTLSSEKYITSKL 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 626 HLVDLAGSERVWKAGVaspvqrdpnGARRLREAQAINRSLLALGGVMAAL-RARRPHVPFRDSQLTRLLQPALCAGTTAV 704
Cdd:cd01375  238 NLVDLAGSERLSKTGV---------EGQVLKEATYINKSLSFLEQAIIALsDKDRTHVPFRQSKLTHVLRDSLGGNCNTV 308
                        330       340
                 ....*....|....*....|....*
gi 117168297 705 LLLQISTRAEDLGETICSLKFAERV 729
Cdd:cd01375  309 MVANIYGEAAQLEETLSTLRFASRV 333
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
387-728 1.65e-59

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 211.91  E-value: 1.65e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 387 QLSEGNQAPPTGCSGRLLELKGNIRVLCRLRPaEGQPSSLVSVEPGQGGTITTCYRGRqhrFRLDWVFPQDASQEEVFRQ 466
Cdd:COG5059    1 QSSDNNSPLKSRLSSRNEKSVSDIKSTIRIIP-GELGERLINTSKKSHVSLEKSKEGT---YAFDKVFGPSATQEDVYEE 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 467 LEPAVL-SCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREM---GTGGHHHVTLSMVEIYNEAVRDLLA 542
Cdd:COG5059   77 TIKPLIdSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLedlSMTKDFAVSISYLEIYNEKIYDLLS 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 543 TGPPERLVVRQgpaGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLraASPPRAQGI- 621
Cdd:COG5059  157 PNEESLNIRED---SLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIEL--ASKNKVSGTs 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 622 -TGTLHLVDLAGSERVWKAGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRP--HVPFRDSQLTRLLQPALC 698
Cdd:COG5059  232 eTSKLSLVDLAGSERAARTG---------NRGTRLKEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDSLG 302
                        330       340       350
                 ....*....|....*....|....*....|
gi 117168297 699 AGTTAVLLLQISTRAEDLGETICSLKFAER 728
Cdd:COG5059  303 GNCNTRVICTISPSSNSFEETINTLKFASR 332
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
410-727 1.66e-59

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 205.32  E-value: 1.66e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 410 IRVLCRLRP-------AEGQP------SSLVSVEPGQGGTITTCYRG---RQHRFRLDWVFPQDASQEEVFRQL-EPAVL 472
Cdd:cd01368    3 VKVYLRVRPlskdeleSEDEGcievinSTTVVLHPPKGSAANKSERNggqKETKFSFSKVFGPNTTQKEFFQGTaLPLVQ 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 473 SCLQGYSVCIFTYGQTGTGKTYSMEGPPEDPGIAPRALQLLFREMGTgghHHVTLSMVEIYNEAVRDLL------ATGPP 546
Cdd:cd01368   83 DLLHGKNGLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG---YSVFVSYIEIYNEYIYDLLepspssPTKKR 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 547 ERLVVRQGpaGQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLrAASPPRAQGI----- 621
Cdd:cd01368  160 QSLRLRED--HNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKL-VQAPGDSDGDvdqdk 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 622 ----TGTLHLVDLAGSERvwkagvaspVQRDPNGARRLREAQAINRSLLALGGVMAALR-----ARRPHVPFRDSQLTRL 692
Cdd:cd01368  237 dqitVSQLSLVDLAGSER---------TSRTQNTGERLKEAGNINTSLMTLGTCIEVLRenqlqGTNKMVPFRDSKLTHL 307
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 117168297 693 LQPALCAGTTAVLLLQISTRAEDLGETICSLKFAE 727
Cdd:cd01368  308 FQNYFDGEGKASMIVNVNPCASDYDETLHVMKFSA 342
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
409-728 1.99e-57

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 198.88  E-value: 1.99e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 409 NIRVLCRLRP-----AEGQPSSLVSVEPGQGGTITT-CYRGRQHRFRLDWVFPQDASQEEVF-RQLEPAVLSCLQGYSVC 481
Cdd:cd01376    1 NVRVAVRVRPfvdgtAGASDPSCVSGIDSCSVELADpRNHGETLKYQFDAFYGEESTQEDIYaREVQPIVPHLLEGQNAT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 482 IFTYGQTGTGKTYSMEGPPEDPGIAPRAL-QLLFREMGTGGHHHVTLSMVEIYNEAVRDLLaTGPPERLVVRQGPAGQgg 560
Cdd:cd01376   81 VFAYGSTGAGKTFTMLGSPEQPGLMPLTVmDLLQMTRKEAWALSFTMSYLEIYQEKILDLL-EPASKELVIREDKDGN-- 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 561 IQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHA--LVTLTLRAASPPRAQgITGTLHLVDLAGSERVWK 638
Cdd:cd01376  158 ILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAvlLIKVDQRERLAPFRQ-RTGKLNLIDLAGSEDNRR 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 639 AGvaspvqrdpNGARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTTAVLLLQISTRAEDLGE 718
Cdd:cd01376  237 TG---------NEGIRLKESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDSLGGGSRCIMVANIAPERTFYQD 307
                        330
                 ....*....|
gi 117168297 719 TICSLKFAER 728
Cdd:cd01376  308 TLSTLNFAAR 317
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
409-730 3.52e-51

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 182.11  E-value: 3.52e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 409 NIRVLCRLRPA---EGQPSSLVSVEPGQGGTIT----------TCYrGRQHRFRLDWVFPQDASQEEVFRQ-LEPAVLSC 474
Cdd:cd01367    1 KIKVCVRKRPLnkkEVAKKEIDVVSVPSKLTLIvhepklkvdlTKY-IENHTFRFDYVFDESSSNETVYRStVKPLVPHI 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 475 LQGYSVCIFTYGQTGTGKTYSMEG----PPEDPGIAPRALQLLFREMGTGGHH---HVTLSMVEIYNEAVRDLLATGPpe 547
Cdd:cd01367   80 FEGGKATCFAYGQTGSGKTYTMGGdfsgQEESKGIYALAARDVFRLLNKLPYKdnlGVTVSFFEIYGGKVFDLLNRKK-- 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 548 RLVVRQGPAGQggIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRaaspPRAQGIT-GTLH 626
Cdd:cd01367  158 RVRLREDGKGE--VQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILR----DRGTNKLhGKLS 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 627 LVDLAGSERvwkagvasPVQRDPNGARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALCAGTT-AVL 705
Cdd:cd01367  232 FVDLAGSER--------GADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSkTCM 303
                        330       340
                 ....*....|....*....|....*
gi 117168297 706 LLQISTRAEDLGETICSLKFAERVG 730
Cdd:cd01367  304 IATISPGASSCEHTLNTLRYADRVK 328
PLN03188 PLN03188
kinesin-12 family protein; Provisional
410-728 9.89e-42

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 165.11  E-value: 9.89e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  410 IRVLCRLRPAEGQPSSLVSVEPGQGGTITTcyrgRQHRFRLDWVFPQDASQEEVFrQL--EPAVLSCLQGYSVCIFTYGQ 487
Cdd:PLN03188  100 VKVIVRMKPLNKGEEGEMIVQKMSNDSLTI----NGQTFTFDSIADPESTQEDIF-QLvgAPLVENCLAGFNSSVFAYGQ 174
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  488 TGTGKTYSMEGPP----------EDPGIAPRALQLLFREMGTGGHHHVT--------LSMVEIYNEAVRDLLatGPPER- 548
Cdd:PLN03188  175 TGSGKTYTMWGPAnglleehlsgDQQGLTPRVFERLFARINEEQIKHADrqlkyqcrCSFLEIYNEQITDLL--DPSQKn 252
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  549 LVVRQGPagQGGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRAQGI----TGT 624
Cdd:PLN03188  253 LQIREDV--KSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLssfkTSR 330
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  625 LHLVDLAGSERVWKAGVAspvqrdpngARRLREAQAINRSLLALGGVMAAL-----RARRPHVPFRDSQLTRLLQPALCA 699
Cdd:PLN03188  331 INLVDLAGSERQKLTGAA---------GDRLKEAGNINRSLSQLGNLINILaeisqTGKQRHIPYRDSRLTFLLQESLGG 401
                         330       340
                  ....*....|....*....|....*....
gi 117168297  700 GTTAVLLLQISTRAEDLGETICSLKFAER 728
Cdd:PLN03188  402 NAKLAMVCAISPSQSCKSETFSTLRFAQR 430
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
405-541 1.33e-29

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 114.62  E-value: 1.33e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  405 ELKGNIRVLCRLRPAEGqpsSLVSVEPGQGGTITTCYRGRQHRFRLDWVFPQDASQEEVFRQLEPAVLSCLQGYSVCIFT 484
Cdd:pfam16796  17 ELKGNIRVFARVRPELL---SEAQIDYPDETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQLVQSCLDGYNVCIFA 93
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  485 YGQTGTGktysmegppEDPGIAPRALQLLFREM---GTGGHHHVTLSMVEIYNEAVRDLL 541
Cdd:pfam16796  94 YGQTGSG---------SNDGMIPRAREQIFRFIsslKKGWKYTIELQFVEIYNESSQDLL 144
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
412-681 6.96e-21

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 90.48  E-value: 6.96e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 412 VLCRLRPAEGQPSSLVSVepgqggtITTCYRGRQhrfrldwvfpQDASQEEVFRQLEPAVLSCLQGYSV-CIFTYGQTGT 490
Cdd:cd01363    1 VLVRVNPFKELPIYRDSK-------IIVFYRGFR----------RSESQPHVFAIADPAYQSMLDGYNNqSIFAYGESGA 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 491 GKTYSMEgppedpGIAPRALQLLF---REMGTGGHHHVTLSMVEIYNEavrdllatgpperlvvrqgpagqggiqvaglt 567
Cdd:cd01363   64 GKTETMK------GVIPYLASVAFngiNKGETEGWVYLTEITVTLEDQ-------------------------------- 105
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297 568 hwdvpnletLHQMLSLGRSNRaTAATVMNQHSSRSHALVTLtlraasppraqgitgtlhLVDLAGSERvwkagvaspvqr 647
Cdd:cd01363  106 ---------ILQANPILEAFG-NAKTTRNENSSRFGKFIEI------------------LLDIAGFEI------------ 145
                        250       260       270
                 ....*....|....*....|....*....|....
gi 117168297 648 dpngarrlreaqaINRSLLALGGVmaaLRARRPH 681
Cdd:cd01363  146 -------------INESLNTLMNV---LRATRPH 163
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
270-345 3.23e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.08  E-value: 3.23e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 117168297 270 QEEAGALLELQGQLQEAQDTTEALRVQLGAQELQLQGLQGALRQLQQETEQnCRQELQQVHGQLAGLRARMASLRQ 345
Cdd:COG1196  249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR-LEQDIARLEERRRELEERLEELEE 323
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
275-353 4.17e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 4.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117168297  275 ALLELQGQLQEAQD---TTEALRVQLGAQELQLQGLQGALRQLQQETEQncRQELQQVHGQLAGLRARMASLRQGCGDLR 351
Cdd:COG4913   611 KLAALEAELAELEEelaEAEERLEALEAELDALQERREALQRLAEYSWD--EIDVASAEREIAELEAELERLDASSDDLA 688

                  ..
gi 117168297  352 GL 353
Cdd:COG4913   689 AL 690
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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