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Conserved domains on  [gi|2063721312|ref|NP_001382365|]
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putative uncharacterized protein MSANTD5 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Myb_DNA-bind_4 super family cl46313
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb ...
 37-86 3.63e-04

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


The actual alignment was detected with superfamily member pfam13837:

Pssm-ID: 463994  Cd Length: 84  Bit Score: 38.02  E-value: 3.63e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2063721312  37 WSDQEIRSFLQEW-EFLEREVYRVKKKYHIVSKAIAQRLKQRGINKSWKEC 86
Cdd:pfam13837   4 WTEEETLALIEIWgERLELRFQESKKRNKKLWEEIAEKMAELGYNRSPEQC 54
 
Name Accession Description Interval E-value
Myb_DNA-bind_4 pfam13837
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb ...
 37-86 3.63e-04

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


Pssm-ID: 463994  Cd Length: 84  Bit Score: 38.02  E-value: 3.63e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2063721312  37 WSDQEIRSFLQEW-EFLEREVYRVKKKYHIVSKAIAQRLKQRGINKSWKEC 86
Cdd:pfam13837   4 WTEEETLALIEIWgERLELRFQESKKRNKKLWEEIAEKMAELGYNRSPEQC 54
 
Name Accession Description Interval E-value
Myb_DNA-bind_4 pfam13837
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb ...
 37-86 3.63e-04

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


Pssm-ID: 463994  Cd Length: 84  Bit Score: 38.02  E-value: 3.63e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2063721312  37 WSDQEIRSFLQEW-EFLEREVYRVKKKYHIVSKAIAQRLKQRGINKSWKEC 86
Cdd:pfam13837   4 WTEEETLALIEIWgERLELRFQESKKRNKKLWEEIAEKMAELGYNRSPEQC 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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