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Conserved domains on  [gi|1843419914|ref|NP_001369619|]
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muscleblind-like protein 2 isoform 17 [Homo sapiens]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10646956)

zinc finger CCCH domain-containing protein similar to Caenorhabditis briggsae muscleblind-like protein that binds to RNA with repeat sequences CUG and CCUG

Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
135-159 4.78e-05

zinc finger;


:

Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 39.53  E-value: 4.78e-05
                           10        20
                   ....*....|....*....|....*
gi 1843419914  135 KLEVCREFQRGNCARGEtDCRFAHP 159
Cdd:smart00356   3 KTELCKFFKRGYCPRGD-RCKFAHP 26
 
Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
135-159 4.78e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 39.53  E-value: 4.78e-05
                           10        20
                   ....*....|....*....|....*
gi 1843419914  135 KLEVCREFQRGNCARGEtDCRFAHP 159
Cdd:smart00356   3 KTELCKFFKRGYCPRGD-RCKFAHP 26
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
134-159 9.03e-04

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 36.02  E-value: 9.03e-04
                          10        20
                  ....*....|....*....|....*..
gi 1843419914 134 DKLEVCREFQR-GNCARGETdCRFAHP 159
Cdd:pfam00642   1 YKTELCRFFLRtGYCKYGDR-CKFAHG 26
 
Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
135-159 4.78e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 39.53  E-value: 4.78e-05
                           10        20
                   ....*....|....*....|....*
gi 1843419914  135 KLEVCREFQRGNCARGEtDCRFAHP 159
Cdd:smart00356   3 KTELCKFFKRGYCPRGD-RCKFAHP 26
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
134-159 9.03e-04

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 36.02  E-value: 9.03e-04
                          10        20
                  ....*....|....*....|....*..
gi 1843419914 134 DKLEVCREFQR-GNCARGETdCRFAHP 159
Cdd:pfam00642   1 YKTELCRFFLRtGYCKYGDR-CKFAHG 26
zf-CCCH_4 pfam18044
CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and ...
 138-159 7.75e-03

CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and one histidine to coordinate the zinc ion. This domain is found in a wide variety of proteins such as E3 ligases.


Pssm-ID: 465626  Cd Length: 22  Bit Score: 33.33  E-value: 7.75e-03
                          10        20
                  ....*....|....*....|..
gi 1843419914 138 VCREFQRGNCARGEtDCRFAHP 159
Cdd:pfam18044   2 LCRYFQKGGCRYGD-NCRFSHD 22
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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