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Conserved domains on  [gi|1826689218|ref|NP_001366239|]
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complement factor H-related protein 1 isoform 6 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 42-264 3.67e-21

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 89.71  E-value: 3.67e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218  42 GDTVQIICNTGYRLQN-NENNISCVERGWSTPPKCrsTDTSCVNPPTVQNAHIlsrQMSKYPSGERVRYECRSPYEMFGD 120
Cdd:PHA02927   47 GDTIEYLCLPGYRKQKmGPIYAKCTGTGWTLFNQC--IKRRCPSPRDIDNGQL---DIGGVDFGSSITYSCNSGYQLIGE 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218 121 EEVMCLNGN-----WT-EPPQCKdsTGKCGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEP 194
Cdd:PHA02927  122 SKSYCELGStgsmvWNpEAPICE--SVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP 198

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1826689218 195 P-----KCLHPCVISREIMENYNIALRWTakqklylrtgESAEFVCKRGYRLSSRShtlRTTCWDGKL---EYPTCAK 264
Cdd:PHA02927  199 PtcqivKCPHPTISNGYLSSGFKRSYSYN----------DNVDFKCKYGYKLSGSS---SSTCSPGNTwqpELPKCVR 263
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 42-264 3.67e-21

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 89.71  E-value: 3.67e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218  42 GDTVQIICNTGYRLQN-NENNISCVERGWSTPPKCrsTDTSCVNPPTVQNAHIlsrQMSKYPSGERVRYECRSPYEMFGD 120
Cdd:PHA02927   47 GDTIEYLCLPGYRKQKmGPIYAKCTGTGWTLFNQC--IKRRCPSPRDIDNGQL---DIGGVDFGSSITYSCNSGYQLIGE 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218 121 EEVMCLNGN-----WT-EPPQCKdsTGKCGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEP 194
Cdd:PHA02927  122 SKSYCELGStgsmvWNpEAPICE--SVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP 198

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1826689218 195 P-----KCLHPCVISREIMENYNIALRWTakqklylrtgESAEFVCKRGYRLSSRShtlRTTCWDGKL---EYPTCAK 264
Cdd:PHA02927  199 PtcqivKCPHPTISNGYLSSGFKRSYSYN----------DNVDFKCKYGYKLSGSS---SSTCSPGNTwqpELPKCVR 263
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 143-197 6.41e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.62  E-value: 6.41e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1826689218 143 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 197
Cdd:cd00033     1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 143-197 6.35e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.99  E-value: 6.35e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1826689218  143 CGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 197
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
143-197 5.72e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 48.26  E-value: 5.72e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1826689218 143 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 197
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 42-264 3.67e-21

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 89.71  E-value: 3.67e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218  42 GDTVQIICNTGYRLQN-NENNISCVERGWSTPPKCrsTDTSCVNPPTVQNAHIlsrQMSKYPSGERVRYECRSPYEMFGD 120
Cdd:PHA02927   47 GDTIEYLCLPGYRKQKmGPIYAKCTGTGWTLFNQC--IKRRCPSPRDIDNGQL---DIGGVDFGSSITYSCNSGYQLIGE 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218 121 EEVMCLNGN-----WT-EPPQCKdsTGKCGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEP 194
Cdd:PHA02927  122 SKSYCELGStgsmvWNpEAPICE--SVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP 198

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1826689218 195 P-----KCLHPCVISREIMENYNIALRWTakqklylrtgESAEFVCKRGYRLSSRShtlRTTCWDGKL---EYPTCAK 264
Cdd:PHA02927  199 PtcqivKCPHPTISNGYLSSGFKRSYSYN----------DNVDFKCKYGYKLSGSS---SSTCSPGNTwqpELPKCVR 263
PHA02831 PHA02831
EEV host range protein; Provisional
 4-211 1.71e-11

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 62.70  E-value: 1.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218   4 LVSVILISRISSVggegLCFFPFVENGHSESS-----GQTHLEGDTVQIICNTGYrlqnNENNISCVERGWSTPPKCRST 78
Cdd:PHA02831    4 LTKIIILLFISKT----WCICVFNKNDAKYSNvdsyeNKVYEENENLEYKCNNNF----DKVFVTCNNGSWSTKNMCIGK 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218  79 dTSCVNPPTVQNAHILSRQmSKYPSGERVRYECR----SPYEMFGDEEVMCLNGNWT-EPPQCKDSTGKCgppPPIDNGD 153
Cdd:PHA02831   76 -RNCKDPVTILNGYIKNKK-DQYSFGDSVTYACKvnklEKYSIVGNETVKCINKQWVpKYPVCKLIRCKY---PALQNGF 150

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218 154 ITSFPLSVYApASSVEYQCQNLYQLEGNKRITCR-NGQW-SEPPKCLHPCViSREIMENY 211
Cdd:PHA02831  151 LNVFEKKFYY-GDIVNFKCKKGFILLGSSVSTCDiNSIWyPGIPKCVKDKV-HNEIQPNY 208
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 143-197 6.41e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.62  E-value: 6.41e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1826689218 143 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 197
Cdd:cd00033     1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTC 56
PHA02831 PHA02831
EEV host range protein; Provisional
 78-264 9.80e-10

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 57.69  E-value: 9.80e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218  78 TDTSCV---NPPTVQNAHILSRQMSKYPSGERVRYECRSPyemFGDEEVMCLNGNWTEPPQCKDSTgKCGPPPPIDNGDI 154
Cdd:PHA02831   14 SKTWCIcvfNKNDAKYSNVDSYENKVYEENENLEYKCNNN---FDKVFVTCNNGSWSTKNMCIGKR-NCKDPVTILNGYI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218 155 TSfPLSVYAPASSVEYQCQ----NLYQLEGNKRITCRNGQW-SEPP-----KCLHPcVISREIMENYnialrwtaKQKLY 224
Cdd:PHA02831   90 KN-KKDQYSFGDSVTYACKvnklEKYSIVGNETVKCINKQWvPKYPvckliRCKYP-ALQNGFLNVF--------EKKFY 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1826689218 225 LrtGESAEFVCKRGYRLSSrshTLRTTCWDGKLEYPTCAK 264
Cdd:PHA02831  160 Y--GDIVNFKCKKGFILLG---SSVSTCDINSIWYPGIPK 194
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 143-197 6.35e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.99  E-value: 6.35e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1826689218  143 CGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 197
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 82-137 1.28e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.15  E-value: 1.28e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1826689218  82 CVNPPTVQNAHILSRQmSKYPSGERVRYECRSPYEMFGDEEVMCL-NGNWT-EPPQCK 137
Cdd:cd00033     1 CPPPPVPENGTVTGSK-GSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTCE 57
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 25-136 2.06e-08

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 53.89  E-value: 2.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218  25 PFVENGHSESSGQTHLEGDTVQIICNTGYRLQNNeNNISCVERGWSTPPKCRStdTSCVNpPTVQNAHILSRQMSKYPSG 104
Cdd:PHA02927  152 PSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGN-SGVLCSGGEWSDPPTCQI--VKCPH-PTISNGYLSSGFKRSYSYN 227

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1826689218 105 ERVRYECRSPYEMFGDEEVMCLNGNWTEP--PQC 136
Cdd:PHA02927  228 DNVDFKCKYGYKLSGSSSSTCSPGNTWQPelPKC 261
Sushi pfam00084
Sushi repeat (SCR repeat);
143-197 5.72e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 48.26  E-value: 5.72e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1826689218 143 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 197
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 82-136 8.96e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 47.91  E-value: 8.96e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1826689218   82 CVNPPTVQNAHILSRQmSKYPSGERVRYECRSPYEMFGDEEVMCL-NGNWT-EPPQC 136
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 82-264 9.25e-08

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 51.97  E-value: 9.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218  82 CVNPPTVQNAHIlSRQMSKYPSGERVRYECRSPYEMFGDEEVMCL----NGNWT-EPPQCKdsTGKCGPPPPIDNGDITS 156
Cdd:PHA02639   22 CDKPDDISNGFI-TELMEKYEIGKLIEYTCNTDYALIGDRFRTCIkdknNAIWSnKAPFCM--LKECNDPPSIINGKIYN 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218 157 fPLSVYAPASSVEYQCQN----LYQLEGNKRITC-RNGQWS-EPPKCLHPCVISREIMENYNIALrwTAKQKLYLRTgeS 230
Cdd:PHA02639   99 -KREMYKVGDEIYYVCNEhkgvQYSLVGNEKITCiQDKSWKpDPPICKMINCRFPALQNGYINGI--PSNKKFYYKT--R 173

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1826689218 231 AEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAK 264
Cdd:PHA02639  174 VGFSCKSGFDLVGEKYSTCNINATWFPSIPTCVR 207
Sushi pfam00084
Sushi repeat (SCR repeat);
82-136 1.40e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.11  E-value: 1.40e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1826689218  82 CVNPPTVQNAHIlSRQMSKYPSGERVRYECRSPYEMFGDEEVMCL-NGNWT-EPPQC 136
Cdd:pfam00084   1 CPPPPDIPNGKV-SATKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 25-76 1.22e-05

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 42.06  E-value: 1.22e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1826689218  25 PFVENGHSESSGQTHLEGDTVQIICNTGYRLQNNEnNISCVERG-WS-TPPKCR 76
Cdd:cd00033     5 PVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSS-TITCTENGgWSpPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 25-75 1.14e-04

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 39.05  E-value: 1.14e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1826689218   25 PFVENGHSESSGQTHLEGDTVQIICNTGYRLQNNEnNISCVERG-WS-TPPKC 75
Cdd:smart00032   5 PDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSS-TITCLENGtWSpPPPTC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 136-197 2.00e-04

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 41.46  E-value: 2.00e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1826689218 136 CKDSTGKCGPPPPIDNGDITSfPLSVYAPASSVEYQCQN-----LYQLEGNKRITC-RNGQWS-EPPKC 197
Cdd:PHA02817   17 SLCDLNKCCYPPSIKNGYIYN-KKTEYNIGSNVTFFCGNntrgvRYTLVGEKNIICeKDGKWNkEFPVC 84
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 100-192 2.47e-04

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 41.61  E-value: 2.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1826689218 100 KYPSGERVRYECRSPYEMFGDEEVMCLNGNWTEPPQCKDstgKCGpPPPIDNGDITSfplSVYAPASSVEYQCQNLYQLE 179
Cdd:PHA02954  146 KYSFGEHITINCDVGYEVIGASYISCTANSWNVIPSCQQ---KCD-IPSLSNGLISG---STFSIGGVIHLSCKSGFTLT 218

                          90
                  ....*....|...
gi 1826689218 180 GNKRITCRNGQWS 192
Cdd:PHA02954  219 GSPSSTCIDGKWN 231
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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