|
Name |
Accession |
Description |
Interval |
E-value |
| Rav1p_C super family |
cl13644 |
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between ... |
1171-1902 |
1.22e-75 |
|
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. The actual alignment was detected with superfamily member pfam12234:
Pssm-ID: 432413 Cd Length: 637 Bit Score: 266.36 E-value: 1.22e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1171 LDWVSKEDGSHILTVGVGANIFMYGRLSgivTEQTNSkdgvavitLPlggsikqgvksRWVLLRSIDLVssvDGTPSLPV 1250
Cdd:pfam12234 76 LDWTSTPDSQSILAVGFPHHVLLLTQLR---YDYTNK--------GP-----------SWAPIRKIDIR---DLTPHPIG 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1251 SLSWVRDGILVVGMDCEMHVYAQWkhavkfgdteadssnAEEAAMQDHSTfksnmlaRKSVVEGTAISDDvfcsptviqd 1330
Cdd:pfam12234 131 DSIWLDDGTLVVAAGNQLFIYDKW---------------LDLRLPDDPFT-------LRSIGSRKILSND---------- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1331 ggLFEAAHVLSPTLPQYHPTQLLELMDLGKVRRAKAILSHLVKCIagevaivrdpdagegtkrhlsrtisvsgstaketv 1410
Cdd:pfam12234 179 --LFHLVSVLNGPLPVYHPQFLIQCLLAGKLELVKEILLRLFKEL----------------------------------- 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1411 tvgKDGTRDYTEIDSIPPLPLYALLAaDQDTSYRISEESTkipqsyedqtvSQPEDQYSELFQiqdiptddidlepekre 1490
Cdd:pfam12234 222 ---KFYSEDLEDLDSFLGIDLEKFLK-DDDKAYSKNKAFT-----------SSSDDDDPDPYE----------------- 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1491 nkskvinlsqygpaYFGQEHARVLSSHLMHSSLPGLTRLEQMFLVALADTVATTSTEldesrdkscsgRDTLDECGLRYL 1570
Cdd:pfam12234 270 --------------TFNEEVASSLNEKLTKISLPQLTRHEQITLINVIEAVGEVEKH-----------RRSLDENGARFL 324
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1571 LAMRLHTclltslppLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRNINTLRRCIE 1650
Cdd:pfam12234 325 LGFKLHL--------LHKKRTSQSSLSWRDISWALHSDNQEILLDLVSRHYGNKLLWEAARESGIFMWLKDIEALRAQFE 396
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1651 KVAKASFQRNN--DALDAALFYLSMKKKAVVWGLFR--SQHDE--KMTTFFSHNFNEDRWRKAALKNAFSLLGKQRFEQS 1724
Cdd:pfam12234 397 VIARNEYTKSDerDPVDCSLFYLALKKKQVLQGLWRmaSWHPEqaKTLKFLSNDFSEPRWRTAALKNAFALLSKHRYEYA 476
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1725 AAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLYESefETSSTYISILNQKIL-GCQKDGsgfsckrlhpDPFLRSLAYW 1803
Cdd:pfam12234 477 AAFFLLADSLKDAVNVLLRQLKDLQLAIAVARVYEG--DDGPVLRELLEERVLpLAIKEG----------DRWLASWAFW 544
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1804 VMK---DYTRAL----DTLLEQTPKEDDEHQVII-KSC---NPVAFSFYNYLRTHPL-LIRRNLASPEgtlatlglKTEK 1871
Cdd:pfam12234 545 MLKrrdLAVRALvtppYDLLENTDLKKSDPASPVsKSFltdDPALVLLYQQLRKKTLqTLKGALKVTP--------KEEY 616
|
730 740 750
....*....|....*....|....*....|.
gi 1809665862 1872 NFVdkinlierklfFTTANAHFKVGCPVLAL 1902
Cdd:pfam12234 617 DFV-----------LRVARIYDRMGCDLLAL 636
|
|
| WD40 super family |
cl29593 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2787-3039 |
1.02e-21 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment. The actual alignment was detected with superfamily member cd00200:
Pssm-ID: 475233 [Multi-domain] Cd Length: 289 Bit Score: 98.18 E-value: 1.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2787 VKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAGNArVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPY 2866
Cdd:cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAASADGTYLASGSSDKTIRLWDLE----TGECV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2867 MSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVC 2946
Cdd:cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2947 IFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSeHakqsifrniGAGVMQIDIIQG 3026
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-H---------ENGVNSVAFSPD 230
|
250
....*....|....
gi 1809665862 3027 NRLF-SCGADGTLK 3039
Cdd:cd00200 231 GYLLaSGSEDGTIR 244
|
|
| WD40 super family |
cl43672 |
WD40 repeat [General function prediction only]; |
45-268 |
3.59e-03 |
|
WD40 repeat [General function prediction only]; The actual alignment was detected with superfamily member COG2319:
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 42.59 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 45 ECVQIIPGakHGNiQVSCVECSNQQGRIA-ASYGNAVCIFEPLGinshkrncqlkCQWLKTGQFFLSSVtYNLAWDPQDN 123
Cdd:COG2319 195 KLLRTLTG--HTG-AVRSVAFSPDGKLLAsGSADGTVRLWDLAT-----------GKLLRTLTGHSGSV-RSVAFSPDGR 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 124 RLLTATD--SIQLWAPPGDDILEEEEEIDNTVppvlndwkcvwqckTSVSvhlmeWSPDGEYFATAGkDDCLLKVWYPMT 201
Cdd:COG2319 260 LLASGSAdgTVRLWDLATGELLRTLTGHSGGV--------------NSVA-----FSPDGKLLASGS-DDGTVRLWDLAT 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1809665862 202 GWKSSIIPqdhhevkrrqsstqfsfvylAHPRAVTGFSWRktskymPRGsvcNVLLTSCHDGVCRLW 268
Cdd:COG2319 320 GKLLRTLT--------------------GHTGAVRSVAFS------PDG---KTLASGSDDGTVRLW 357
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Rav1p_C |
pfam12234 |
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between ... |
1171-1902 |
1.22e-75 |
|
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Pssm-ID: 432413 Cd Length: 637 Bit Score: 266.36 E-value: 1.22e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1171 LDWVSKEDGSHILTVGVGANIFMYGRLSgivTEQTNSkdgvavitLPlggsikqgvksRWVLLRSIDLVssvDGTPSLPV 1250
Cdd:pfam12234 76 LDWTSTPDSQSILAVGFPHHVLLLTQLR---YDYTNK--------GP-----------SWAPIRKIDIR---DLTPHPIG 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1251 SLSWVRDGILVVGMDCEMHVYAQWkhavkfgdteadssnAEEAAMQDHSTfksnmlaRKSVVEGTAISDDvfcsptviqd 1330
Cdd:pfam12234 131 DSIWLDDGTLVVAAGNQLFIYDKW---------------LDLRLPDDPFT-------LRSIGSRKILSND---------- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1331 ggLFEAAHVLSPTLPQYHPTQLLELMDLGKVRRAKAILSHLVKCIagevaivrdpdagegtkrhlsrtisvsgstaketv 1410
Cdd:pfam12234 179 --LFHLVSVLNGPLPVYHPQFLIQCLLAGKLELVKEILLRLFKEL----------------------------------- 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1411 tvgKDGTRDYTEIDSIPPLPLYALLAaDQDTSYRISEESTkipqsyedqtvSQPEDQYSELFQiqdiptddidlepekre 1490
Cdd:pfam12234 222 ---KFYSEDLEDLDSFLGIDLEKFLK-DDDKAYSKNKAFT-----------SSSDDDDPDPYE----------------- 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1491 nkskvinlsqygpaYFGQEHARVLSSHLMHSSLPGLTRLEQMFLVALADTVATTSTEldesrdkscsgRDTLDECGLRYL 1570
Cdd:pfam12234 270 --------------TFNEEVASSLNEKLTKISLPQLTRHEQITLINVIEAVGEVEKH-----------RRSLDENGARFL 324
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1571 LAMRLHTclltslppLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRNINTLRRCIE 1650
Cdd:pfam12234 325 LGFKLHL--------LHKKRTSQSSLSWRDISWALHSDNQEILLDLVSRHYGNKLLWEAARESGIFMWLKDIEALRAQFE 396
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1651 KVAKASFQRNN--DALDAALFYLSMKKKAVVWGLFR--SQHDE--KMTTFFSHNFNEDRWRKAALKNAFSLLGKQRFEQS 1724
Cdd:pfam12234 397 VIARNEYTKSDerDPVDCSLFYLALKKKQVLQGLWRmaSWHPEqaKTLKFLSNDFSEPRWRTAALKNAFALLSKHRYEYA 476
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1725 AAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLYESefETSSTYISILNQKIL-GCQKDGsgfsckrlhpDPFLRSLAYW 1803
Cdd:pfam12234 477 AAFFLLADSLKDAVNVLLRQLKDLQLAIAVARVYEG--DDGPVLRELLEERVLpLAIKEG----------DRWLASWAFW 544
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1804 VMK---DYTRAL----DTLLEQTPKEDDEHQVII-KSC---NPVAFSFYNYLRTHPL-LIRRNLASPEgtlatlglKTEK 1871
Cdd:pfam12234 545 MLKrrdLAVRALvtppYDLLENTDLKKSDPASPVsKSFltdDPALVLLYQQLRKKTLqTLKGALKVTP--------KEEY 616
|
730 740 750
....*....|....*....|....*....|.
gi 1809665862 1872 NFVdkinlierklfFTTANAHFKVGCPVLAL 1902
Cdd:pfam12234 617 DFV-----------LRVARIYDRMGCDLLAL 636
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2787-3039 |
1.02e-21 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 98.18 E-value: 1.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2787 VKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAGNArVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPY 2866
Cdd:cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAASADGTYLASGSSDKTIRLWDLE----TGECV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2867 MSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVC 2946
Cdd:cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2947 IFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSeHakqsifrniGAGVMQIDIIQG 3026
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-H---------ENGVNSVAFSPD 230
|
250
....*....|....
gi 1809665862 3027 NRLF-SCGADGTLK 3039
Cdd:cd00200 231 GYLLaSGSEDGTIR 244
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2787-3039 |
1.51e-21 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 99.99 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2787 VKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFrQAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVnqtaSNPKPY 2866
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTL-TGHTGAVRSVAFSPDGKTLASGSADGTVRLWDL----ATGKLL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2867 MSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTLispGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVC 2946
Cdd:COG2319 156 RTLTGHSGAVTSVAFSPDGKLLASGS---DDGTVRLWDLA---TGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVR 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2947 IFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSEhakqsifrniGAGVMQIDII-Q 3025
Cdd:COG2319 230 LWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGH----------SGGVNSVAFSpD 299
|
250
....*....|....
gi 1809665862 3026 GNRLFSCGADGTLK 3039
Cdd:COG2319 300 GKLLASGSDDGTVR 313
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
2952-2990 |
4.46e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.68 E-value: 4.46e-05
10 20 30
....*....|....*....|....*....|....*....
gi 1809665862 2952 QRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVW 2990
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
2953-2990 |
1.20e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 41.56 E-value: 1.20e-04
10 20 30
....*....|....*....|....*....|....*...
gi 1809665862 2953 RQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVW 2990
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
45-268 |
3.59e-03 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 42.59 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 45 ECVQIIPGakHGNiQVSCVECSNQQGRIA-ASYGNAVCIFEPLGinshkrncqlkCQWLKTGQFFLSSVtYNLAWDPQDN 123
Cdd:COG2319 195 KLLRTLTG--HTG-AVRSVAFSPDGKLLAsGSADGTVRLWDLAT-----------GKLLRTLTGHSGSV-RSVAFSPDGR 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 124 RLLTATD--SIQLWAPPGDDILEEEEEIDNTVppvlndwkcvwqckTSVSvhlmeWSPDGEYFATAGkDDCLLKVWYPMT 201
Cdd:COG2319 260 LLASGSAdgTVRLWDLATGELLRTLTGHSGGV--------------NSVA-----FSPDGKLLASGS-DDGTVRLWDLAT 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1809665862 202 GWKSSIIPqdhhevkrrqsstqfsfvylAHPRAVTGFSWRktskymPRGsvcNVLLTSCHDGVCRLW 268
Cdd:COG2319 320 GKLLRTLT--------------------GHTGAVRSVAFS------PDG---KTLASGSDDGTVRLW 357
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Rav1p_C |
pfam12234 |
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between ... |
1171-1902 |
1.22e-75 |
|
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Pssm-ID: 432413 Cd Length: 637 Bit Score: 266.36 E-value: 1.22e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1171 LDWVSKEDGSHILTVGVGANIFMYGRLSgivTEQTNSkdgvavitLPlggsikqgvksRWVLLRSIDLVssvDGTPSLPV 1250
Cdd:pfam12234 76 LDWTSTPDSQSILAVGFPHHVLLLTQLR---YDYTNK--------GP-----------SWAPIRKIDIR---DLTPHPIG 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1251 SLSWVRDGILVVGMDCEMHVYAQWkhavkfgdteadssnAEEAAMQDHSTfksnmlaRKSVVEGTAISDDvfcsptviqd 1330
Cdd:pfam12234 131 DSIWLDDGTLVVAAGNQLFIYDKW---------------LDLRLPDDPFT-------LRSIGSRKILSND---------- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1331 ggLFEAAHVLSPTLPQYHPTQLLELMDLGKVRRAKAILSHLVKCIagevaivrdpdagegtkrhlsrtisvsgstaketv 1410
Cdd:pfam12234 179 --LFHLVSVLNGPLPVYHPQFLIQCLLAGKLELVKEILLRLFKEL----------------------------------- 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1411 tvgKDGTRDYTEIDSIPPLPLYALLAaDQDTSYRISEESTkipqsyedqtvSQPEDQYSELFQiqdiptddidlepekre 1490
Cdd:pfam12234 222 ---KFYSEDLEDLDSFLGIDLEKFLK-DDDKAYSKNKAFT-----------SSSDDDDPDPYE----------------- 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1491 nkskvinlsqygpaYFGQEHARVLSSHLMHSSLPGLTRLEQMFLVALADTVATTSTEldesrdkscsgRDTLDECGLRYL 1570
Cdd:pfam12234 270 --------------TFNEEVASSLNEKLTKISLPQLTRHEQITLINVIEAVGEVEKH-----------RRSLDENGARFL 324
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1571 LAMRLHTclltslppLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRNINTLRRCIE 1650
Cdd:pfam12234 325 LGFKLHL--------LHKKRTSQSSLSWRDISWALHSDNQEILLDLVSRHYGNKLLWEAARESGIFMWLKDIEALRAQFE 396
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1651 KVAKASFQRNN--DALDAALFYLSMKKKAVVWGLFR--SQHDE--KMTTFFSHNFNEDRWRKAALKNAFSLLGKQRFEQS 1724
Cdd:pfam12234 397 VIARNEYTKSDerDPVDCSLFYLALKKKQVLQGLWRmaSWHPEqaKTLKFLSNDFSEPRWRTAALKNAFALLSKHRYEYA 476
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1725 AAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLYESefETSSTYISILNQKIL-GCQKDGsgfsckrlhpDPFLRSLAYW 1803
Cdd:pfam12234 477 AAFFLLADSLKDAVNVLLRQLKDLQLAIAVARVYEG--DDGPVLRELLEERVLpLAIKEG----------DRWLASWAFW 544
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 1804 VMK---DYTRAL----DTLLEQTPKEDDEHQVII-KSC---NPVAFSFYNYLRTHPL-LIRRNLASPEgtlatlglKTEK 1871
Cdd:pfam12234 545 MLKrrdLAVRALvtppYDLLENTDLKKSDPASPVsKSFltdDPALVLLYQQLRKKTLqTLKGALKVTP--------KEEY 616
|
730 740 750
....*....|....*....|....*....|.
gi 1809665862 1872 NFVdkinlierklfFTTANAHFKVGCPVLAL 1902
Cdd:pfam12234 617 DFV-----------LRVARIYDRMGCDLLAL 636
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2787-3039 |
1.02e-21 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 98.18 E-value: 1.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2787 VKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAGNArVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPY 2866
Cdd:cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAASADGTYLASGSSDKTIRLWDLE----TGECV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2867 MSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVC 2946
Cdd:cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2947 IFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSeHakqsifrniGAGVMQIDIIQG 3026
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-H---------ENGVNSVAFSPD 230
|
250
....*....|....
gi 1809665862 3027 NRLF-SCGADGTLK 3039
Cdd:cd00200 231 GYLLaSGSEDGTIR 244
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2787-3039 |
1.51e-21 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 99.99 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2787 VKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFrQAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVnqtaSNPKPY 2866
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTL-TGHTGAVRSVAFSPDGKTLASGSADGTVRLWDL----ATGKLL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2867 MSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTLispGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVC 2946
Cdd:COG2319 156 RTLTGHSGAVTSVAFSPDGKLLASGS---DDGTVRLWDLA---TGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVR 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2947 IFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSEhakqsifrniGAGVMQIDII-Q 3025
Cdd:COG2319 230 LWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGH----------SGGVNSVAFSpD 299
|
250
....*....|....
gi 1809665862 3026 GNRLFSCGADGTLK 3039
Cdd:COG2319 300 GKLLASGSDDGTVR 313
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2797-3039 |
4.66e-21 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 98.44 E-value: 4.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2797 QYYLTGAQDGSVRMFEWTRPQQLVCFRqAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPYMSWQCHSKAT 2876
Cdd:COG2319 175 KLLASGSDDGTVRLWDLATGKLLRTLT-GHTGAVRSVAFSPDGKLLASGSADGTVRLWDLA----TGKLLRTLTGHSGSV 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2877 SDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQRQLI 2956
Cdd:COG2319 250 RSVAFSPDGRLLASGS---ADGTVRLWDL---ATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLL 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2957 HTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKsEHakqsifrniGAGVMQIDI-IQGNRLFSCGAD 3035
Cdd:COG2319 324 RTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLT-GH---------TGAVTSVAFsPDGRTLASGSAD 393
|
....
gi 1809665862 3036 GTLK 3039
Cdd:COG2319 394 GTVR 397
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2785-3040 |
5.45e-19 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 90.09 E-value: 5.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2785 HNVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAgNARVTRLYFNSQGN--KCGVADGEgfLSIWQVNqtasN 2862
Cdd:cd00200 52 GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH-TSYVSSVAFSPDGRilSSSSRDKT--IKVWDVE----T 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2863 PKPYMSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRK 2942
Cdd:cd00200 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSS---QDGTIKLWDL---RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2943 GHVCIFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFkSEHAKqsifrnigaGVMQID 3022
Cdd:cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTN---------SVTSLA 268
|
250
....*....|....*....
gi 1809665862 3023 IIQ-GNRLFSCGADGTLKT 3040
Cdd:cd00200 269 WSPdGKRLASGSADGTIRI 287
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2827-3039 |
1.88e-18 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 88.55 E-value: 1.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2827 NARVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPYMSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTl 2906
Cdd:cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLE----TGELLRTLKGHTGPVRDVAASADGTYLASGS---SDKTIRLWDL- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2907 isPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGN 2986
Cdd:cd00200 81 --ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1809665862 2987 IKVWRLTGHGLIHSFKSeHAKQsifrnigagVMQIDII-QGNRLFSCGADGTLK 3039
Cdd:cd00200 159 IKLWDLRTGKCVATLTG-HTGE---------VNSVAFSpDGEKLLSSSSDGTIK 202
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2797-2994 |
8.44e-18 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 88.81 E-value: 8.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2797 QYYLTGAQDGSVRMFEWTRPQQLVCFRqAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPYMSWQCHSKAT 2876
Cdd:COG2319 217 KLLASGSADGTVRLWDLATGKLLRTLT-GHSGSVRSVAFSPDGRLLASGSADGTVRLWDLA----TGELLRTLTGHSGGV 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2877 SDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQRQLI 2956
Cdd:COG2319 292 NSVAFSPDGKLLASGS---DDGTVRLWDL---ATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELL 365
|
170 180 190
....*....|....*....|....*....|....*...
gi 1809665862 2957 HTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTG 2994
Cdd:COG2319 366 RTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLAT 403
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2793-2991 |
2.99e-16 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 82.00 E-value: 2.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2793 HPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAgNARVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPYMSWQCH 2872
Cdd:cd00200 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPDGTFVASSSQDGTIKLWDLR----TGKCVATLTGH 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2873 SKATSDFAFITSSSLVATSGhsnDNRNVCLWDTLISpgnSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQ 2952
Cdd:cd00200 177 TGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250
|
170 180 190
....*....|....*....|....*....|....*....
gi 1809665862 2953 RQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWR 2991
Cdd:cd00200 251 GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2869-3039 |
4.80e-13 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 72.37 E-value: 4.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2869 WQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIF 2948
Cdd:cd00200 5 LKGHTGGVTCVAFSPDGKLLATGS---GDGTIKVWDL---ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2949 DIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTghglihSFKSEHAkqsiFRNIGAGVMQIDIIQGNR 3028
Cdd:cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE------TGKCLTT----LRGHTDWVNSVAFSPDGT 148
|
170
....*....|..
gi 1809665862 3029 -LFSCGADGTLK 3039
Cdd:cd00200 149 fVASSSQDGTIK 160
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2913-3039 |
1.75e-11 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 67.75 E-value: 1.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2913 LIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRL 2992
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1809665862 2993 TGHGLIHSFKSeHAKqsifrnigaGVMQIDIIQGNR-LFSCGADGTLK 3039
Cdd:cd00200 81 ETGECVRTLTG-HTS---------YVSSVAFSPDGRiLSSSSRDKTIK 118
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2872-3039 |
7.37e-08 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 57.61 E-value: 7.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2872 HSKATSDFAFITSSSLVATSGHSNDNRnvcLWDTLispGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIR 2951
Cdd:COG2319 35 LAAAVASLAASPDGARLAAGAGDLTLL---LLDAA---AGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 2952 QRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKsEHAkqsifrnigAGVMQIDII-QGNRLF 3030
Cdd:COG2319 109 TGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLT-GHS---------GAVTSVAFSpDGKLLA 178
|
....*....
gi 1809665862 3031 SCGADGTLK 3039
Cdd:COG2319 179 SGSDDGTVR 187
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
2952-2990 |
4.46e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.68 E-value: 4.46e-05
10 20 30
....*....|....*....|....*....|....*....
gi 1809665862 2952 QRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVW 2990
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
2953-2990 |
1.20e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 41.56 E-value: 1.20e-04
10 20 30
....*....|....*....|....*....|....*...
gi 1809665862 2953 RQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVW 2990
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
45-268 |
3.59e-03 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 42.59 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 45 ECVQIIPGakHGNiQVSCVECSNQQGRIA-ASYGNAVCIFEPLGinshkrncqlkCQWLKTGQFFLSSVtYNLAWDPQDN 123
Cdd:COG2319 195 KLLRTLTG--HTG-AVRSVAFSPDGKLLAsGSADGTVRLWDLAT-----------GKLLRTLTGHSGSV-RSVAFSPDGR 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1809665862 124 RLLTATD--SIQLWAPPGDDILEEEEEIDNTVppvlndwkcvwqckTSVSvhlmeWSPDGEYFATAGkDDCLLKVWYPMT 201
Cdd:COG2319 260 LLASGSAdgTVRLWDLATGELLRTLTGHSGGV--------------NSVA-----FSPDGKLLASGS-DDGTVRLWDLAT 319
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170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1809665862 202 GWKSSIIPqdhhevkrrqsstqfsfvylAHPRAVTGFSWRktskymPRGsvcNVLLTSCHDGVCRLW 268
Cdd:COG2319 320 GKLLRTLT--------------------GHTGAVRSVAFS------PDG---KTLASGSDDGTVRLW 357
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