|
Name |
Accession |
Description |
Interval |
E-value |
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
447-860 |
7.40e-11 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 65.49 E-value: 7.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 447 RPYVCDVCGKTFRNNAGLKVHRRLHTGEKPYKCDV--CGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHK 524
Cdd:COG5048 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKASSSSLS 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 525 R-IHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEEC------GKAYISLSSLINHKSVHPGEKPFKCDECEKA 597
Cdd:COG5048 112 SsSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNnsssvnTPQSNSLHPPLPANSLSKDPSSNLSLLISSN 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 598 FITyrTLTNHKKVHLGEKPYKCDVC---EKSFNYTSLLSQHRRVHTREKPYecDRCEKVFRNNSSLKVHKRIHtgerpYE 674
Cdd:COG5048 192 VST--SIPSSSENSPLSSSYSIPSSssdQNLENSSSSLPLTTNSQLSPKSL--LSQSPSSLSSSDSSSSASES-----PR 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 675 CDVCGKAYISHSSLINHKSTHPGRT-PHTCDECGKAFFSSRTLISHKR--VHLGE--KPFKCVE--CGKSFSYSSLLSQH 747
Cdd:COG5048 263 SSLPTASSQSSSPNESDSSSEKGFSlPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRH 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 748 KRIHTGEKPYVC--DRCGKAFR-----NSSGLTVHKRIHTGEKPYECD--ECGKAYISHSSLINHKSVHQGKQPYNCE-- 816
Cdd:COG5048 343 ILLHTSISPAKEklLNSSSKFSpllnnEPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPYNCKnp 422
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1799657617 817 -CGKSFNYRSVLDQHKRIHTGKKPYRCNECGKaFNIRSNLTKHKR 860
Cdd:COG5048 423 pCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS-FRRDLDLSNHGK 466
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
125-552 |
4.12e-09 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 60.09 E-value: 4.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 125 TSYPSLQQKTNAVKKLHKCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGT--FRSSSSLRVHKRIHTGEKPYKCEEC 202
Cdd:COG5048 18 STPKSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDksFSRPLELSRHLRTHHNNPSDLNSKS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 203 GKAYMSY--SSLINHKSTHS--GEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHtge 278
Cdd:COG5048 98 LPLSNSKasSSSLSSSSSNSndNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPAN--- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 279 kpyecdICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVI 358
Cdd:COG5048 175 ------SLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSL 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 359 HTGEKPYECDECGKAFRNSSGLIVHKRIHTGE-------KPYKCDVCGKAFSYSSGLAVHK--SIHPGK--KAHECKE-- 425
Cdd:COG5048 249 SSSDSSSSASESPRSSLPTASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLrsVNHSGEslKPFSCPYsl 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 426 CGKSFSYNSLLLQHRTIHTGERPYVC--DVCGKTFR-----NNAGLKVHRRLHTGEKPYKCDV--CGKAYISRSSLKNHK 496
Cdd:COG5048 329 CGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSpllnnEPPQSLQQYKDLKNDKKSETLSnsCIRNFKRDSNLSLHI 408
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1799657617 497 GIHLGEKP--YKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHK 552
Cdd:COG5048 409 ITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNHGK 466
|
|
| SUF4-like |
cd20908 |
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ... |
503-551 |
3.00e-04 |
|
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.
Pssm-ID: 411020 [Multi-domain] Cd Length: 82 Bit Score: 40.23 E-value: 3.00e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1799657617 503 KPYkCSYCEKSFNYSSALEQHKRIHTrekpFGCDECGKAFRNNSGLKVH 551
Cdd:cd20908 1 KPW-CYYCDREFDDEKILIQHQKAKH----FKCHICHKKLYTAGGLAVH 44
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
296-320 |
3.03e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 38.51 E-value: 3.03e-04
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
827-850 |
6.99e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 37.74 E-value: 6.99e-04
|
| SUF4-like |
cd20908 |
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ... |
363-411 |
5.90e-03 |
|
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.
Pssm-ID: 411020 [Multi-domain] Cd Length: 82 Bit Score: 36.77 E-value: 5.90e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1799657617 363 KPYeCDECGKAFRNSSGLIVHKRIHTgekpYKCDVCGKAFSYSSGLAVH 411
Cdd:cd20908 1 KPW-CYYCDREFDDEKILIQHQKAKH----FKCHICHKKLYTAGGLAVH 44
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
447-860 |
7.40e-11 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 65.49 E-value: 7.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 447 RPYVCDVCGKTFRNNAGLKVHRRLHTGEKPYKCDV--CGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHK 524
Cdd:COG5048 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKASSSSLS 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 525 R-IHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEEC------GKAYISLSSLINHKSVHPGEKPFKCDECEKA 597
Cdd:COG5048 112 SsSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNnsssvnTPQSNSLHPPLPANSLSKDPSSNLSLLISSN 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 598 FITyrTLTNHKKVHLGEKPYKCDVC---EKSFNYTSLLSQHRRVHTREKPYecDRCEKVFRNNSSLKVHKRIHtgerpYE 674
Cdd:COG5048 192 VST--SIPSSSENSPLSSSYSIPSSssdQNLENSSSSLPLTTNSQLSPKSL--LSQSPSSLSSSDSSSSASES-----PR 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 675 CDVCGKAYISHSSLINHKSTHPGRT-PHTCDECGKAFFSSRTLISHKR--VHLGE--KPFKCVE--CGKSFSYSSLLSQH 747
Cdd:COG5048 263 SSLPTASSQSSSPNESDSSSEKGFSlPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRH 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 748 KRIHTGEKPYVC--DRCGKAFR-----NSSGLTVHKRIHTGEKPYECD--ECGKAYISHSSLINHKSVHQGKQPYNCE-- 816
Cdd:COG5048 343 ILLHTSISPAKEklLNSSSKFSpllnnEPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPYNCKnp 422
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1799657617 817 -CGKSFNYRSVLDQHKRIHTGKKPYRCNECGKaFNIRSNLTKHKR 860
Cdd:COG5048 423 pCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS-FRRDLDLSNHGK 466
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
363-776 |
1.13e-09 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 61.64 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 363 KPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLA--VHKSIHPGKKAHEC-KECGKSFSYNSLLLQH 439
Cdd:COG5048 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLElsRHLRTHHNNPSDLNsKSLPLSNSKASSSSLS 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 440 RTIHTGERPYVCDVCGKTFRNNAGLKVHRRLHTGEKPYKCDVCGKAYISR----SSLKNHKGIHLGEKPYKCSYCE---- 511
Cdd:COG5048 112 SSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTpqsnSLHPPLPANSLSKDPSSNLSLLissn 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 512 KSFNYSSALEQHKRIHTREKPFGCDECGKaFRNNSGLKVHKRIHTGERPYKCEecgkayislssliNHKSVHPGEKPFKC 591
Cdd:COG5048 192 VSTSIPSSSENSPLSSSYSIPSSSSDQNL-ENSSSSLPLTTNSQLSPKSLLSQ-------------SPSSLSSSDSSSSA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 592 DECEKAFITYRTLTNHKKVHLGE-------KPYKCDVCEKSFNYTSLLSQHRR--VHTRE--KPYECD--RCEKVFRNNS 658
Cdd:COG5048 258 SESPRSSLPTASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPysLCGKLFSRND 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 659 SLKVHKRIHTGERPYEC--DVCGKAYI------SHSSLINHKSTHPGRTPHTCDECGKAFFSSR-TLISHKRVHLGEKP- 728
Cdd:COG5048 338 ALKRHILLHTSISPAKEklLNSSSKFSpllnnePPQSLQQYKDLKNDKKSETLSNSCIRNFKRDsNLSLHIITHLSFRPy 417
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1799657617 729 -FKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDRCGKAFRNSSGLTVHK 776
Cdd:COG5048 418 nCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNHGK 466
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
125-552 |
4.12e-09 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 60.09 E-value: 4.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 125 TSYPSLQQKTNAVKKLHKCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGT--FRSSSSLRVHKRIHTGEKPYKCEEC 202
Cdd:COG5048 18 STPKSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDksFSRPLELSRHLRTHHNNPSDLNSKS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 203 GKAYMSY--SSLINHKSTHS--GEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHtge 278
Cdd:COG5048 98 LPLSNSKasSSSLSSSSSNSndNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPAN--- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 279 kpyecdICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVI 358
Cdd:COG5048 175 ------SLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSL 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 359 HTGEKPYECDECGKAFRNSSGLIVHKRIHTGE-------KPYKCDVCGKAFSYSSGLAVHK--SIHPGK--KAHECKE-- 425
Cdd:COG5048 249 SSSDSSSSASESPRSSLPTASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLrsVNHSGEslKPFSCPYsl 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 426 CGKSFSYNSLLLQHRTIHTGERPYVC--DVCGKTFR-----NNAGLKVHRRLHTGEKPYKCDV--CGKAYISRSSLKNHK 496
Cdd:COG5048 329 CGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSpllnnEPPQSLQQYKDLKNDKKSETLSnsCIRNFKRDSNLSLHI 408
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1799657617 497 GIHLGEKP--YKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHK 552
Cdd:COG5048 409 ITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNHGK 466
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
279-665 |
4.82e-09 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 59.71 E-value: 4.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 279 KPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSI------------------HFGDKPYKCD 340
Cdd:COG5048 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLrthhnnpsdlnskslplsNSKASSSSLS 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 341 ECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEK-------PYKCDVCGKAFSYSSGLAVHKS 413
Cdd:COG5048 112 SSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPqsnslhpPLPANSLSKDPSSNLSLLISSN 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 414 IHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCgkTFRNNAGLKVHRRLHTGEKPYK--CDVCGKAYISRSS 491
Cdd:COG5048 192 VSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTN--SQLSPKSLLSQSPSSLSSSDSSssASESPRSSLPTAS 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 492 LKNHKGIHLGE-------KPYKCSYCEKSFNYSSALEQHKR--IHTRE--KPFGCDE--CGKAFRNNSGLKVHKRIHTGE 558
Cdd:COG5048 270 SQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSI 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 559 RPYKC--EECGKAYISLSSLINHKSVHP-----GEKPFKCD--ECEKAFITYRTLTNHKKVHLGEKP--YKCDVCEKSFN 627
Cdd:COG5048 350 SPAKEklLNSSSKFSPLLNNEPPQSLQQykdlkNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPynCKNPPCSKSFN 429
|
410 420 430
....*....|....*....|....*....|....*...
gi 1799657617 628 YTSLLSQHRRVHTREKPYECdRCEKVFRNNSSLKVHKR 665
Cdd:COG5048 430 RHYNLIPHKKIHTNHAPLLC-SILKSFRRDLDLSNHGK 466
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
389-468 |
6.90e-09 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 58.96 E-value: 6.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 389 GEKPYKCDV--CGKAFSYSSGLAVHKsihpgKKAHeckeCGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLKV 466
Cdd:COG5189 346 DGKPYKCPVegCNKKYKNQNGLKYHM-----LHGH----QNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416
|
..
gi 1799657617 467 HR 468
Cdd:COG5189 417 HR 418
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
468-552 |
1.24e-08 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 58.19 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 468 RRLHT-GEKPYKCDV--CGKAYISRSSLKNHKgihlgekpyKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRN 544
Cdd:COG5189 340 RMLKVkDGKPYKCPVegCNKKYKNQNGLKYHM---------LHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKN 410
|
....*...
gi 1799657617 545 NSGLKVHK 552
Cdd:COG5189 411 LNGLKYHR 418
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
195-610 |
1.39e-08 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 58.17 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 195 KPYKCEECGKAYMSYSSLINHKSTHSGEKNCKC--DECGKSFNYSSVLDQHKRIHTGEKPYECgeCGKAFRNSSGLRVHK 272
Cdd:COG5048 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSDLN--SKSLPLSNSKASSSS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 273 RIHTGEKPYECDIC-GKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHfgDKPYKCdECEKSFNYSSL 351
Cdd:COG5048 110 LSSSSSNSNDNNLLsSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLHP--PLPANS-LSKDPSSNLSL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 352 LIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTgEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFS 431
Cdd:COG5048 187 LISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENS-SSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSL 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 432 YNSLLLQHRTIHTGER-------PYVCDVCGKTFRNNAGLKVHRR--LHTGE--KPYKCDV--CGKAYISRSSLKNHKGI 498
Cdd:COG5048 266 PTASSQSSSPNESDSSsekgfslPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILL 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 499 HLGEKPYKCSYCEKSFNYSSAL-------EQHKRIHTREKPFGCD--ECGKAFRNNSGLKVHKRIHTGERP--YKCEECG 567
Cdd:COG5048 346 HTSISPAKEKLLNSSSKFSPLLnneppqsLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPynCKNPPCS 425
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1799657617 568 KAYISLSSLINHKSVHPGEKPFKCdECEKAFITYRTLTNHKKV 610
Cdd:COG5048 426 KSFNRHYNLIPHKKIHTNHAPLLC-SILKSFRRDLDLSNHGKD 467
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
445-497 |
4.21e-06 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 50.10 E-value: 4.21e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1799657617 445 GERPYVCDV--CGKTFRNNAGLKVHRrLH--------------------TGEKPYKCDVCGKAYISRSSLKNHKG 497
Cdd:COG5189 346 DGKPYKCPVegCNKKYKNQNGLKYHM-LHghqnqklhenpspekmnifsAKDKPYRCEVCDKRYKNLNGLKYHRK 419
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
503-862 |
2.34e-05 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 47.77 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 503 KPYKCSYCEKSFNYSSALEQHKRIHTREKPFGC--DECGKAFRNNSGLKVHKRIHTGERPYKCE--ECGKAYISLSSLIN 578
Cdd:COG5048 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSDLNSksLPLSNSKASSSSLS 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 579 HKSVHPgEKPFKCDECEKAFITYRTLTN--HKKVHLGEKPYKcdVCEKSF----NYTSLLSQHRRVHTREKPYECDRCEK 652
Cdd:COG5048 112 SSSSNS-NDNNLLSSHSLPPSSRDPQLPdlLSISNLRNNPLP--GNNSSSvntpQSNSLHPPLPANSLSKDPSSNLSLLI 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 653 VFRNNSSLKVHKRIHTGERPYECDVCGKAYISHSSLINHKSTHP-GRTPHTCDECGKAFFSSRTLISHKR-VHLGEKPFK 730
Cdd:COG5048 189 SSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNsQLSPKSLLSQSPSSLSSSDSSSSASeSPRSSLPTA 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 731 cVECGKSFSYSsLLSQHKRIHTgekPYVCDRCGKAFRNSSGLTVHKR--IHTGE--KPYECDECGkayishsslinhksv 806
Cdd:COG5048 269 -SSQSSSPNES-DSSSEKGFSL---PIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYSL--------------- 328
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1799657617 807 hqgkqpynceCGKSFNYRSVLDQHKRIHTGKKPYRC--NECGKAFNIRSNLTKHKRTH 862
Cdd:COG5048 329 ----------CGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLLNNEPPQSLQ 376
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
249-300 |
3.32e-05 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 47.41 E-value: 3.32e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1799657617 249 GEKPYECG--ECGKAFRNSSGLRVHKR-------------------IHTGEKPYECDICGKTFSNSSGLRVHK 300
Cdd:COG5189 346 DGKPYKCPveGCNKKYKNQNGLKYHMLhghqnqklhenpspekmniFSAKDKPYRCEVCDKRYKNLNGLKYHR 418
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
193-272 |
7.82e-05 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 46.25 E-value: 7.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799657617 193 GEKPYKCE--ECGKAYMSYSSLINHKsthsgekncKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRV 270
Cdd:COG5189 346 DGKPYKCPveGCNKKYKNQNGLKYHM---------LHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416
|
..
gi 1799657617 271 HK 272
Cdd:COG5189 417 HR 418
|
|
| SUF4-like |
cd20908 |
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ... |
503-551 |
3.00e-04 |
|
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.
Pssm-ID: 411020 [Multi-domain] Cd Length: 82 Bit Score: 40.23 E-value: 3.00e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1799657617 503 KPYkCSYCEKSFNYSSALEQHKRIHTrekpFGCDECGKAFRNNSGLKVH 551
Cdd:cd20908 1 KPW-CYYCDREFDDEKILIQHQKAKH----FKCHICHKKLYTAGGLAVH 44
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
296-320 |
3.03e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 38.51 E-value: 3.03e-04
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
268-292 |
5.74e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 37.74 E-value: 5.74e-04
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
827-850 |
6.99e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 37.74 E-value: 6.99e-04
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
380-404 |
8.02e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 37.35 E-value: 8.02e-04
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
240-264 |
1.03e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 37.35 E-value: 1.03e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
183-206 |
1.18e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 36.97 E-value: 1.18e-03
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
612-664 |
1.21e-03 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 42.40 E-value: 1.21e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1799657617 612 LGEKPYKCDV--CEKSFNYTSLLSQHRR-------------------VHTREKPYECDRCEKVFRNNSSLKVHK 664
Cdd:COG5189 345 KDGKPYKCPVegCNKKYKNQNGLKYHMLhghqnqklhenpspekmniFSAKDKPYRCEVCDKRYKNLNGLKYHR 418
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
548-572 |
1.88e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 36.58 E-value: 1.88e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
659-684 |
2.16e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 36.20 E-value: 2.16e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
744-768 |
4.05e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.42 E-value: 4.05e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
772-796 |
4.30e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.42 E-value: 4.30e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
352-376 |
5.23e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.04 E-value: 5.23e-03
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
464-488 |
5.60e-03 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 35.04 E-value: 5.60e-03
|
| SUF4-like |
cd20908 |
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ... |
363-411 |
5.90e-03 |
|
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.
Pssm-ID: 411020 [Multi-domain] Cd Length: 82 Bit Score: 36.77 E-value: 5.90e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1799657617 363 KPYeCDECGKAFRNSSGLIVHKRIHTgekpYKCDVCGKAFSYSSGLAVH 411
Cdd:cd20908 1 KPW-CYYCDREFDDEKILIQHQKAKH----FKCHICHKKLYTAGGLAVH 44
|
|
|