|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4485 |
pfam14846 |
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately ... |
13-98 |
5.12e-31 |
|
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately 90 amino acids in length.
Pssm-ID: 464345 Cd Length: 83 Bit Score: 116.60 E-value: 5.12e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 13 LDAEFDHFVVDMKPFVLKLPHRSERQRCALWIRKLCEPSGTgagLMGRKNRNLYAKLLLHMLRRGILEGPFTHRPEPGTL 92
Cdd:pfam14846 1 LDEEFLYFLLDIKPLLANLNDKEDKIRAAEWLKKLCEPTHN---LEEKKNRNDYLQLLLLMLQNGRLEGPFNKPPPPGPL 77
|
....*.
gi 1735137067 93 KTLPSY 98
Cdd:pfam14846 78 PPLPEF 83
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
557-898 |
7.83e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 7.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 557 SELDKEKEDAQRKihkfeeaLKEKEEQLSRVTEVQRLQAQQadaaLEEFKRQVEVnsEKVYGEMKEQMEKVEADLT---- 632
Cdd:COG1196 168 SKYKERKEEAERK-------LEATEENLERLEDILGELERQ----LEPLERQAEK--AERYRELKEELKELEAELLllkl 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 633 RSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHL--LQQHSAEKDSLVRDHDREIENLEKQLRAAnmehenq 710
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELeeLELELEEAQAEEYELLAELARLEQDIARL------- 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 711 iQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIELGLLREEEKQRAAKDHETAVKKLKAESERVKMELKKTHAAE 790
Cdd:COG1196 308 -EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 791 TEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKAL 870
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
330 340
....*....|....*....|....*...
gi 1735137067 871 QDELETRSHQVRSAEKKLHHKELEAQEQ 898
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
504-877 |
1.07e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 504 VIEELEQNICQLKQQVQESElqRKQQVKDQENKFHMEKNHLKhtyekkVHELQSELDKEKEDAqrkihkfeEALKEKEEQ 583
Cdd:COG1196 194 ILGELERQLEPLERQAEKAE--RYRELKEELKELEAELLLLK------LRELEAELEELEAEL--------EELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 584 LSRVTEVQRLQAQQADAALEEFKRQVEVNSEKVYgEMKEQMEKVEADLTRSKSLREkqskeflwQLEDAKQRYEQQIVEL 663
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEY-ELLAELARLEQDIARLEERRR--------ELEERLEELEEELAEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 664 KLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHE-NQIQESKKRDAQVIADMEAQVHKLREELISVNSQ 742
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAElAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 743 RKQQLIELGLLREEEKQRAAKDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAE 822
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1735137067 823 LQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQDELETR 877
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA 543
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
524-888 |
7.10e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 7.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 524 LQRKQQVKDQENKFHM--EKNHLKHTYEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVT-EVQRLQAQQADA 600
Cdd:TIGR02168 673 LERRREIEELEEKIEEleEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEaEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 601 ALEEFKRQVEVNSEKvygemkEQMEKVEADLTRSKSLREKQSKEFLwQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSA 680
Cdd:TIGR02168 753 SKELTELEAEIEELE------ERLEEAEEELAEAEAEIEELEAQIE-QLKEELKALREALDELRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 681 EKDSLVRDHD--REIENLEKQLRaanmehenQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIELGLLRE--E 756
Cdd:TIGR02168 826 LESLERRIAAteRRLEDLEEQIE--------ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSelE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 757 EKQRAAKDHETAVKKLKAEservkMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSR 836
Cdd:TIGR02168 898 ELSEELRELESKRSELRRE-----LEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1735137067 837 QQLAAERRLQ-------DVIQKFEDEKQQLirdndqaikalqDELETRSHQVRSAEKKL 888
Cdd:TIGR02168 973 RLKRLENKIKelgpvnlAAIEEYEELKERY------------DFLTAQKEDLTEAKETL 1019
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
552-887 |
1.36e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 552 VHELQSELD---KEKEDAQR-KIHKFEEALKEKEEQLSRVTEVQRlQAQQADAALEEFKRQVEvnsekvygEMKEQMEKV 627
Cdd:COG1196 195 LGELERQLEpleRQAEKAERyRELKEELKELEAELLLLKLRELEA-ELEELEAELEELEAELE--------ELEAELAEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 628 EADLTRSKSLREKQSKEFlwqleDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDhDREIENLEKQLRAANmEH 707
Cdd:COG1196 266 EAELEELRLELEELELEL-----EEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL-EEELAELEEELEELE-EE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 708 ENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIELGLLREEEKQRAAKDHETAVKKLKAESERVKMELKKTH 787
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 788 AAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKfeDEKQQLIRDNDQAI 867
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL--LEELAEAAARLLLL 496
|
330 340
....*....|....*....|
gi 1735137067 868 KALQDELETRSHQVRSAEKK 887
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLL 516
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
236-886 |
2.26e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 2.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 236 LRKASSLHDDHFLSRMHEKELDMKTKMMEAKFSEEKLKLQQKHDAEVQKILERKNNELEELKIL--YKKKQTETEETIRK 313
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADA 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 314 LEKKVQILIRDCQVIRETKENQITELKKICEQS-TESLNNDWEKKLHNAV---AEMEKDKFELQKHHTETIQELLEDTNV 389
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAeAAEKKKEEAKKKADAAkkkAEEKKKADEAKKKAEEDKKKADELKKA 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 390 RLSKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQ---ELKTRRNILHKEKE 466
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKkkaEEAKKADEAKKKAE 1493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 467 HLVNDYEQNVKLLKTKYDSDiNLLRQEHALSTSKTSGVIEELEQNICQLKQQVQES-ELQRKQQVKDQENKFHMEKNH-- 543
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKAD-EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAdELKKAEELKKAEEKKKAEEAKka 1572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 544 -------------LKHTYEKKVHELQSELDKEKEDAQRKIHKFEEAlKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVE 610
Cdd:PTZ00121 1573 eedknmalrkaeeAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 611 VNSEKVYGEM-------KEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYEQqiVELKLEHEQEKTHLLQQHSAEKD 683
Cdd:PTZ00121 1652 LKKAEEENKIkaaeeakKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE--LKKKEAEEKKKAEELKKAEEENK 1729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 684 SLVRDHDREIENLEKQLRAANMEhenqiQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIELGLLREEEKQRAAK 763
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAEEAKKD-----EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 764 DHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAER 843
Cdd:PTZ00121 1805 DNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEI 1884
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 1735137067 844 RLQDVIQKFE-DEKQQLIRDNDQAIK---ALQDELETRSHQVRSAEK 886
Cdd:PTZ00121 1885 EEADEIEKIDkDDIEREIPNNNMAGKnndIIDDKLDKDEYIKRDAEE 1931
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
300-875 |
3.63e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 3.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 300 YKKKQTEteetIRKLEKKVQIL-IRDCQVIRETKENQITELKKICEQSTESLNndwekKLHNAVAEMEKDKFELQKHHTE 378
Cdd:COG1196 215 YRELKEE----LKELEAELLLLkLRELEAELEELEAELEELEAELEELEAELA-----ELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 379 TIQELLEdTNVRLSKMEADYVVQMQstnhMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRR 458
Cdd:COG1196 286 AQAEEYE-LLAELARLEQDIARLEE----RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 459 NILHKEKEHLVNDYEQNVKLLKTKYDSDINLLRQEHALSTSKTS--GVIEELEQNICQLKQQVQESELQRKQQVKDQEnk 536
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEleEAEEALLERLERLEEELEELEEALAELEEEEE-- 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 537 fhmeknhlkhtyEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVNSE-K 615
Cdd:COG1196 439 ------------EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgF 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 616 VYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSA--------EKDSLVR 687
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflplDKIRARA 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 688 DHDREIENLEKQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIELGLLREEEKQRAAKDHET 767
Cdd:COG1196 587 ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 768 AVKKLKAESERVKMELKKThAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQttiSSLKEESSRQQLAAERRLQD 847
Cdd:COG1196 667 RRELLAALLEAEAELEELA-ERLAEEELELEEALLAEEEEERELAEAEEERLEEELE---EEALEEQLEAEREELLEELL 742
|
570 580
....*....|....*....|....*...
gi 1735137067 848 VIQKFEDEKQQLIRDNDQAIKALQDELE 875
Cdd:COG1196 743 EEEELLEEEALEELPEPPDLEELERELE 770
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
255-936 |
7.26e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 7.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 255 ELDMKTKMMEAKFSEEKLKLQQKhDAEVQkILERKNNELEELKILYKKKQTETEETIRKLEKKVQIlirdcqvIRETKEN 334
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQEL-EEKLE-ELRLEVSELEEEIEELQKELYALANEISRLEQQKQI-------LRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 335 QITELKKICEQSTESLNNDWEKKLhnAVAEMEKDKFELQKHHTETIQEL--LEDTNVRLSKMEADYVVQMQSTNHMIKEL 412
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAE--ELAELEEKLEELKEELESLEAELeeLEAELEELESRLEELEEQLETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 413 EGRVQQLMGE-------AENSNLQRQKLTQEKLELERcyQITCNELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKYDS 485
Cdd:TIGR02168 392 ELQIASLNNEierlearLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 486 ------DINLLRQEHALSTSKTSgVIEELEQNICQLKQQVQESELQRKQQ------------------------------ 529
Cdd:TIGR02168 470 leeaeqALDAAERELAQLQARLD-SLERLQENLEGFSEGVKALLKNQSGLsgilgvlselisvdegyeaaieaalggrlq 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 530 --VKDQENKFHMEKNHLKHTYEKKVHEL------QSELDKEKEDAQRKIHKFEEALKEKEEQ-----------LSRVTEV 590
Cdd:TIGR02168 549 avVVENLNAAKKAIAFLKQNELGRVTFLpldsikGTEIQGNDREILKNIEGFLGVAKDLVKFdpklrkalsylLGGVLVV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 591 QRLQAQQADAALEEFK-RQVEVNSEKVYG----------------EMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDAK 653
Cdd:TIGR02168 629 DDLDNALELAKKLRPGyRIVTLDGDLVRPggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKA-LAELRKEL 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 654 QRYEQQIVELKLEHEQekthLLQQHSAEKDSLVRdHDREIENLEKQLRAANMEHENQIQESKKRDAQvIADMEAQVHKLR 733
Cdd:TIGR02168 708 EELEEELEQLRKELEE----LSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEAEEELAEAE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 734 EELISVNSQRKQQLIELGLLREE--EKQRAAKDHETAVKKLKaesERVKMELKKTHAAETEMT-LEKANSRLKQIEKEYT 810
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREAldELRAELTLLNEEAANLR---ERLESLERRIAATERRLEdLEEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 811 QKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKfeDEKQQLIRDNDQAIKALQDELETRSHQVRSAEKKLhh 890
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEEL--SEELRELESKRSELRRELEELREKLAQLELRLEGL-- 934
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 1735137067 891 kELEAQEQIMYIRQEYETKFKGLMP-----ASLRQELEDTISSLKSQVNFL 936
Cdd:TIGR02168 935 -EVRIDNLQERLSEEYSLTLEEAEAlenkiEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
614-922 |
1.11e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 614 EKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYEQQivelkleheQEKTHLLQQHSAEKDSLVRDHDREI 693
Cdd:TIGR02168 192 EDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEEL---------REELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 694 ENLEKQ---LRAANMEHENQIQESKKR---DAQVIADMEAQVHKLREELISVNSQRKQqlIELGLLREEEKQRAAKDHET 767
Cdd:TIGR02168 263 QELEEKleeLRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQLEE--LEAQLEELESKLDELAEELA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 768 AVKKlKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQI---IAELQTTISSLKEESSRQQLAAERR 844
Cdd:TIGR02168 341 ELEE-KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLelqIASLNNEIERLEARLERLEDRRERL 419
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1735137067 845 LQDViqkfEDEKQQLIRDNDQAIKALQDELETRSHQVRSAEKKLHHKELEAQEQIMYIRQEYETKFKGLMPASLRQEL 922
Cdd:TIGR02168 420 QQEI----EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
409-933 |
4.83e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 4.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 409 IKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQitcnELQELKTRRNILHKEKEHLvndyEQNVKLLKTKYDSdin 488
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESL----EGSKRKLEEKIRE--- 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 489 llRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKnhLKHTYEKKVHELQ------------ 556
Cdd:PRK03918 264 --LEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEK--RLSRLEEEINGIEerikeleekeer 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 557 -SELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEvNSEKVYGEMKEQMEKVEADLTRSK 635
Cdd:PRK03918 340 lEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELE-ELEKAKEEIEEEISKITARIGELK 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 636 SlREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEkthLLQQHSAEKDSlVRDHDREIENLEKQLRAANMEHENQIQESK 715
Cdd:PRK03918 419 K-EIKELKKAIEELKKAKGKCPVCGRELTEEHRKE---LLEEYTAELKR-IEKELKEIEEKERKLRKELRELEKVLKKES 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 716 KRDAQviadmeaqvHKLREELISVnsqrKQQLIELGLLREEEKQRAAKDHETAVKKLKAESERVKMELKKTHA-----AE 790
Cdd:PRK03918 494 ELIKL---------KELAEQLKEL----EEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEElkkklAE 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 791 TEMTLEKANSRLKQIEKEYTQKLAKSsqiIAELQTTISSLKEESSR--QQLAAERRLQDVIQKFEDEKQQLirdnDQAIK 868
Cdd:PRK03918 561 LEKKLDELEEELAELLKELEELGFES---VEELEERLKELEPFYNEylELKDAEKELEREEKELKKLEEEL----DKAFE 633
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 869 ALQD---ELETRSHQVRSAEKKLHHKELE-AQEQIMYIRQEYETKFKGLMPA-SLRQELEDTISSLKSQV 933
Cdd:PRK03918 634 ELAEtekRLEELRKELEELEKKYSEEEYEeLREEYLELSRELAGLRAELEELeKRREEIKKTLEKLKEEL 703
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
557-906 |
6.75e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 6.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 557 SELDKEKEDAQRKIHKFEEALKEKEEQLSRV-TEVQRLQAQQADA----ALEEFKRQVEVNSE-KVYGEMKEQMEKVEAD 630
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKrQQLERLRREREKAeryqALLKEKREYEGYELlKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 631 LTRskslREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKThLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQ 710
Cdd:TIGR02169 246 LAS----LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD-LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 711 IQESKKRDAQvIADMEAQVHKLREELISVNSQRKQQLIELGLLREE------EKQRAAKDHETAVKKLKAESERV----- 779
Cdd:TIGR02169 321 EERLAKLEAE-IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEledlraELEEVDKEFAETRDELKDYREKLeklkr 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 780 KMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKssqiIAELQTTISSLKEESSrqqlAAERRLQDVIQKFEDEKQQl 859
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAK----INELEEEKEDKALEIK----KQEWKLEQLAADLSKYEQE- 470
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1735137067 860 IRDNDQAIKALQDELEtrshqvrsaEKKLHHKELEAQEQIMYIRQEY 906
Cdd:TIGR02169 471 LYDLKEEYDRVEKELS---------KLQRELAEAEAQARASEERVRG 508
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
552-915 |
1.59e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.51 E-value: 1.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 552 VHELQSELDKEKEDAQRKIHKFE-EALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVevnseKVYGEMKEQMEKVEAD 630
Cdd:pfam17380 275 LHIVQHQKAVSERQQQEKFEKMEqERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQA-----AIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 631 LTRSKSLREKQSKEFLWQLEDAKQRYEQQIVE-LKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHEN 709
Cdd:pfam17380 350 LERIRQEERKRELERIRQEEIAMEISRMRELErLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 710 QiqESKKRDAQVIADMEA-QVHKLREElisvnSQRKQQLIELGLLREEEKQRAAKDHETAVKKLKAESERVKMELKKTHA 788
Cdd:pfam17380 430 E--EARQREVRRLEEERArEMERVRLE-----EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 789 AETEMTLEKANSRlKQIEKEYTQKlaksSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLirdndqaiK 868
Cdd:pfam17380 503 ERKQAMIEEERKR-KLLEKEMEER----QKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL--------E 569
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1735137067 869 ALQDELETRsHQVRSAEKKlhHKELEAQEQIMYIRQEYETKFKGLMP 915
Cdd:pfam17380 570 AMEREREMM-RQIVESEKA--RAEYEATTPITTIKPIYRPRISEYQP 613
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
414-949 |
1.80e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 414 GRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYeQNVKLLKTKYDSDINLLRQE 493
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-YALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 494 HALSTSKTSGVIEELEQNIcQLKQQVQESELQRKQQVKDQENKFHMEKNHLKhtyekKVHELQSELDKEKEDAQRKIHKF 573
Cdd:TIGR02168 311 LANLERQLEELEAQLEELE-SKLDELAEELAELEEKLEELKEELESLEAELE-----ELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 574 EEALKEKEEQLsrvtEVQRLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAK 653
Cdd:TIGR02168 385 RSKVAQLELQI----ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 654 QRYE--QQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREI------------------------------ENLEKQLR 701
Cdd:TIGR02168 461 EALEelREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallknqsglsgilgvlselisvdEGYEAAIE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 702 AANMEHENQIQESKKRDAQVIADMEAQVHKLRE---ELISVNSQRKQQLIELGLLREEEKQRAAKDHETAVKKLK----- 773
Cdd:TIGR02168 541 AALGGRLQAVVVENLNAAKKAIAFLKQNELGRVtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsy 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 774 -------AESERVKMEL-KKTHAAETEMTL----------------EKANSRL-KQIE-KEYTQKLAKSSQIIAELQTTI 827
Cdd:TIGR02168 621 llggvlvVDDLDNALELaKKLRPGYRIVTLdgdlvrpggvitggsaKTNSSILeRRREiEELEEKIEELEEKIAELEKAL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 828 SSLKEEssRQQLAAERRLqdvIQKFEDEKQQLIRDNDQAIKALQDELETRSHQVRSAEKKLhhkeLEAQEQIMYIRQEYE 907
Cdd:TIGR02168 701 AELRKE--LEELEEELEQ---LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL----TELEAEIEELEERLE 771
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1735137067 908 TKFKGLMPA-SLRQELEDTISSLKSQVNFLQKRASILQEELTT 949
Cdd:TIGR02168 772 EAEEELAEAeAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
248-859 |
6.02e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 6.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 248 LSRMHEKELDMKTKMMEAKFSEEKLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQV 327
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 328 IRETKEnQITELKKICEQSTESLNNDWEKK--LHNAVAEMEKDKFELQKHHTETIQELLEDTNVRLSKMEADYVVQMQST 405
Cdd:COG1196 311 RRELEE-RLEELEEELAELEEELEELEEELeeLEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 406 NHM--IKELEGRVQQLMGEAENSNLQRQKLTQEKLELERcyqitcnELQELKTRRNILHKEkehlvndyEQNVKLLKTKY 483
Cdd:COG1196 390 EALraAAELAAQLEELEEAEEALLERLERLEEELEELEE-------ALAELEEEEEEEEEA--------LEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 484 DSDINLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELDKEK 563
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 564 EDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLREKQSK 643
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 644 EFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDsLVRDHDREIENLEKQLRAANMEHENQIQESKKRDAQVIA 723
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE-GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 724 DMEAQVHKLREELISVNSQRKQQLIELGLLREEEKQRAAKDHETAVKKLKAESERVKMELKkthAAETEMTLEKANSRLK 803
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE---ELPEPPDLEELERELE 770
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1735137067 804 QIEKEytqklakssqiIAEL----QTTISSLKEESSR-----QQLA----AERRLQDVIQKFEDEKQQL 859
Cdd:COG1196 771 RLERE-----------IEALgpvnLLAIEEYEELEERydflsEQREdleeARETLEEAIEEIDRETRER 828
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
596-833 |
9.27e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 9.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 596 QQADAALEEFKRqvevnsekvYGEMKEQMEKVEADLTRSKSLREKQSKefLWQLEDAKQRYEQQIVELKLEHEQEKTHLL 675
Cdd:COG4913 225 EAADALVEHFDD---------LERAHEALEDAREQIELLEPIRELAER--YAAARERLAELEYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 676 QQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQ---QLIELGL 752
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleaLLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 753 ---LREEEKQRAAKDHETAVKKLKAESERVkmelkKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISS 829
Cdd:COG4913 374 plpASAEEFAALRAEAAALLEALEEELEAL-----EEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
....
gi 1735137067 830 LKEE 833
Cdd:COG4913 449 LAEA 452
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
721-954 |
1.34e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 721 VIADMEAQVHKLREE------LISVNSQRKQQLIELGLLREEEKQRAAKDHETAVKKLKAESERVKMELkkthaAETEMT 794
Cdd:COG1196 194 ILGELERQLEPLERQaekaerYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL-----AELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 795 LEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQ-----DVIQKFEDEKQQLIRDNDQAIKA 869
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEleeelAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 870 LQDELETRSHQVRSAEKKLHHKELEAQEQimyIRQEYETKFKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTT 949
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEA---EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
....*
gi 1735137067 950 YQSRR 954
Cdd:COG1196 426 LEEAL 430
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
619-950 |
1.47e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 619 EMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDAKQRYEQQIVELKLEHEQekthLLQQHSAEKdslvrdhdREIENLEK 698
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENR-LDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLK--------ERLEELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 699 QLRAANMEHENQIQESKKRDAqVIADMEAQVHKLREELISVNsqrkqqlielgllreeekqraAKDHETAVKKLKAESER 778
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEA-RIEELEEDLHKLEEALNDLE---------------------ARLSHSRIPEIQAELSK 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 779 VKMELKKthaaetemtLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEessrqQLAAERRLQDVIQKFEDEKQQ 858
Cdd:TIGR02169 803 LEEEVSR---------IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE-----QIKSIEKEIENLNGKKEELEE 868
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 859 LIRDNDQAIKALQDELETRSHQVRSAEKKLHhkelEAQEQImyirqeyetkfkglmpaslrQELEDTISSLKSQVNFLQK 938
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKERDELEAQLR----ELERKI--------------------EELEAQIEKKRKRLSELKA 924
|
330
....*....|..
gi 1735137067 939 RASILQEELTTY 950
Cdd:TIGR02169 925 KLEALEEELSEI 936
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
555-773 |
1.49e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.33 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 555 LQSELDKEKEDAQRKIHKFEEALKEKEEQLsrvtevqrlqaQQADAALEEFKRQ---VEVNSE-----KVYGEMKEQMEK 626
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKEL-----------EEAEAALEEFRQKnglVDLSEEaklllQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 627 VEADLTRSKSLR---EKQSKEFLWQLEDAK-----QRYEQQIVELKLEHEQEKTHLLQQHSAekdslVRDHDREIENLEK 698
Cdd:COG3206 231 ARAELAEAEARLaalRAQLGSGPDALPELLqspviQQLRAQLAELEAELAELSARYTPNHPD-----VIALRAQIAALRA 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1735137067 699 QLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRkQQLIELgllrEEEKQRAAKDHETAVKKLK 773
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE-AELRRL----EREVEVARELYESLLQRLE 375
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
578-798 |
1.87e-06 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 51.75 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 578 KEKEEQLSRVTEVQRLQAQQADAALEEFKRQVevnsEKVYGEMKEQMEKVEAdltrskslREKQSKeflwqlEDAKQRYE 657
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQE--------EEDKLL------EEAEKEAQ 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 658 QQIVELKLEHEqEKTHLLQQHSAEKDSLVRDHdrEIENLEKQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLRE--E 735
Cdd:PRK00409 577 QAIKEAKKEAD-EIIKELRQLQKGGYASVKAH--ELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQkgE 653
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1735137067 736 LISVNSQRKQQL--------IELGLLREEEKQRAAKDHETAVKKLKAESERVKMELKKTHAAETEMTLEKA 798
Cdd:PRK00409 654 VLSIPDDKEAIVqagimkmkVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYEEALERLDKY 724
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
408-888 |
2.65e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.71 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 408 MIKELEGRVQQLMGEAENSNLQ--------------RQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLvndyE 473
Cdd:pfam01576 27 ELKELEKKHQQLCEEKNALQEQlqaetelcaeaeemRARLAARKQELEEILHELESRLEEEEERSQQLQNEKKKM----Q 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 474 QNVKLLKTKYDSDiNLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQ----------QVKDQENKFHMeKNH 543
Cdd:pfam01576 103 QHIQDLEEQLDEE-EAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLleeriseftsNLAEEEEKAKS-LSK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 544 LKHTYEKKVHELQSELDKEKEDAQRKihkfeEALKEKEEqlsrvTEVQRLQAQQAD--AALEEFKRQVEVNSEKVYGEMK 621
Cdd:pfam01576 181 LKNKHEAMISDLEERLKKEEKGRQEL-----EKAKRKLE-----GESTDLQEQIAElqAQIAELRAQLAKKEEELQAALA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 622 EQMEKVEADLTRSKSLREKQS-----KEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLL--QQHSAEKDSLVRDHDREIE 694
Cdd:pfam01576 251 RLEEETAQKNNALKKIRELEAqiselQEDLESERAARNKAEKQRRDLGEELEALKTELEdtLDTTAAQQELRSKREQEVT 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 695 NLEKQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIELGLLREEEK--QRAAKDHETAVKKL 772
Cdd:pfam01576 331 ELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRtlQQAKQDSEHKRKKL 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 773 KA----------ESERVKMEL-KKTHAAETEmtLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEEsSRQQLAA 841
Cdd:pfam01576 411 EGqlqelqarlsESERQRAELaEKLSKLQSE--LESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE-TRQKLNL 487
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1735137067 842 ERRLqdviQKFEDEK---QQLIRDNDQAIKALQDELETRSHQVRSAEKKL 888
Cdd:pfam01576 488 STRL----RQLEDERnslQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
516-670 |
2.81e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.93 E-value: 2.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 516 KQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQA 595
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1735137067 596 QQADAALEEFKRQvEVNSEKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLwqLEDAKQRYEQQIVELKLEHEQE 670
Cdd:PRK12704 110 EELEKKEKELEQK-QQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL--LEKVEEEARHEAAVLIKEIEEE 181
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
269-934 |
2.86e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 269 EEKLKLQQKHDAEVQKI--LERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQS 346
Cdd:pfam02463 173 EALKKLIEETENLAELIidLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 347 TESLNNDWEKK-----------------------------LHNAVAEMEKDKFELQKHHTETIQELLEDTNVRLSKMEAD 397
Cdd:pfam02463 253 IESSKQEIEKEeeklaqvlkenkeeekekklqeeelkllaKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 398 YVVQMQSTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYEQNVK 477
Cdd:pfam02463 333 EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 478 LLKTKYDSDINLLRQEHA-LSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQ 556
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEiLEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 557 SELDKE--KEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVNSEKVY-GEMKEQMEKVEADLTR 633
Cdd:pfam02463 493 QKLEERsqKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSAtADEVEERQKLVRALTE 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 634 SKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQIQE 713
Cdd:pfam02463 573 LPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGV 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 714 SKKRDAQVIADMEAQVHKLREELisvNSQRKQQLIELGLLREEEKQRAAKDHETAVKKLKAESERVKMELKKTHAAETEM 793
Cdd:pfam02463 653 SLEEGLAEKSEVKASLSELTKEL---LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQE 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 794 TLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQDE 873
Cdd:pfam02463 730 AQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEE 809
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1735137067 874 LETRSHQVRSAEKKLHHKELEAQEQIMYIRQEYETKFKGLMPASLRQELEDTISSLKSQVN 934
Cdd:pfam02463 810 LKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQ 870
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
684-890 |
4.14e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.40 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 684 SLVRDHDREIENLEKQLRAANME---HENQIQESKKRDAQVIADMEAQVHKLREE---LISVNSQRKQQLIELglLREEE 757
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQiktYNKNIEEQRKKNGENIARKQNKYDELVEEaktIKAEIEELTDELLNL--VMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 758 KQRAA-KDHETAVKKLKAESERVKMELK-----------KTHAAETEMTLEKANSRLKQIEKEYTQ---KLAKSSQIIAE 822
Cdd:PHA02562 252 DPSAAlNKLNTAAAKIKSKIEQFQKVIKmyekggvcptcTQQISEGPDRITKIKDKLKELQHSLEKldtAIDELEEIMDE 331
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1735137067 823 LQTTISSLKE-----ESSRQQLAAER----RLQDVIQKFEDEKQqlirDNDQAIKALQDELETRSHQVRSAEKKLHH 890
Cdd:PHA02562 332 FNEQSKKLLElknkiSTNKQSLITLVdkakKVKAAIEELQAEFV----DNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
450-858 |
7.30e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 7.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 450 ELQELKTRRNILHKEKEHLvndyEQNVKLLKTKydsdinllRQEHALSTSKTSGVIEELEQNICQLKQQVQESElqRKQQ 529
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRI----ENRLDELSQE--------LSDASRKIGEIEKEIEQLEQEEEKLKERLEELE--EDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 530 VKDQEnkfhmeknhlkhtYEKKVHELQsELDKEKEDAQRKIHKFEEALKEKEEQLSRVtevqrlQAQQADAALEEFKRQV 609
Cdd:TIGR02169 748 SLEQE-------------IENVKSELK-ELEARIEELEEDLHKLEEALNDLEARLSHS------RIPEIQAELSKLEEEV 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 610 EvnsekvygEMKEQMEKVEADLTRSKSLREkqskeflwQLEDAKQRYEQQIVELKL--EHEQEKTHLLQQHSAEKDSLVR 687
Cdd:TIGR02169 808 S--------RIEARLREIEQKLNRLTLEKE--------YLEKEIQELQEQRIDLKEqiKSIEKEIENLNGKKEELEEELE 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 688 DHDREIENLEKQ---LRAANMEHENQIQESKKRdaqvIADMEAQVHKLREELISVNSQRKQQLIELGLLREEEKQRAAKD 764
Cdd:TIGR02169 872 ELEAALRDLESRlgdLKKERDELEAQLRELERK----IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIP 947
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 765 HETAV-KKLKAESERVKMELkkthaaeteMTLEKANSRLKQiekEYtqklakssqiiAELQTTISSLKEEssRQQLAAER 843
Cdd:TIGR02169 948 EEELSlEDVQAELQRVEEEI---------RALEPVNMLAIQ---EY-----------EEVLKRLDELKEK--RAKLEEER 1002
|
410
....*....|....*.
gi 1735137067 844 R-LQDVIQKFEDEKQQ 858
Cdd:TIGR02169 1003 KaILERIEEYEKKKRE 1018
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
528-944 |
7.56e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 7.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 528 QQVKDQENKFHMEKNHLKHtYEKKVHELQsELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQaqQADAALEEFKR 607
Cdd:COG4717 71 KELKELEEELKEAEEKEEE-YAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLYQELE--ALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 608 QVE--VNSEKVYGEMKEQMEKVEADLTRSK----SLREKQSKEFLWQLEDAKQRYEQQivelkleheQEKTHLLQQHSAE 681
Cdd:COG4717 147 RLEelEERLEELRELEEELEELEAELAELQeeleELLEQLSLATEEELQDLAEELEEL---------QQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 682 KDSLVRDHDREIENLEKQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELISV---------------NSQRKQQ 746
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlflvlgllallfLLLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 747 LIELGLLREEEKQRAAKDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQ-KLAKSSQIIAELQT 825
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEElQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 826 TISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQ----DELETRSHQVRSAEKKLHHKELEAQEQIMY 901
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEaldeEELEEELEELEEELEELEEELEELREELAE 457
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1735137067 902 IRQEYETKFKGLMPASLRQELEdtisSLKSQVNFLQKRASILQ 944
Cdd:COG4717 458 LEAELEQLEEDGELAELLQELE----ELKAELRELAEEWAALK 496
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
477-947 |
9.73e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 9.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 477 KLLKTKYDSDINLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQ----ENKFHMEKNHLKhTYEKKV 552
Cdd:TIGR00606 169 KALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQitskEAQLESSREIVK-SYENEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 553 HELQSELdKEKEDAQRKIHKFEEALKEKEEqlsrvTEVQRlqaqqadaalEEFKRQVEVNSEKVYGEMKEQMEKVEADlt 632
Cdd:TIGR00606 248 DPLKNRL-KEIEHNLSKIMKLDNEIKALKS-----RKKQM----------EKDNSELELKMEKVFQGTDEQLNDLYHN-- 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 633 RSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQIQ 712
Cdd:TIGR00606 310 HQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSE 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 713 ESKKrdaqviadmeaQVHKLREELISVNSQRKQQLIELGLLREEEKQRAAKDHETAVKKLKAeservKMELKKThaaete 792
Cdd:TIGR00606 390 RQIK-----------NFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGR-----TIELKKE------ 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 793 mTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESsrqqLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQD 872
Cdd:TIGR00606 448 -ILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELS----KAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQ 522
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1735137067 873 ELETRSHQ--VRSAEKKLHHKELEAQEQIMYIRQEYETKFKGLMPA-SLRQELEDTISSLKSQVNFLQKRASILQEEL 947
Cdd:TIGR00606 523 EMEQLNHHttTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYfPNKKQLEDWLHSKSKEINQTRDRLAKLNKEL 600
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
504-949 |
1.09e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 504 VIEELEQNICQLKQQVQES-ELQRKQQ------VKDQENKFHMEKNHLKHTYEKKVHELQSELDKeKEDAQRKIHKFEEA 576
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESnELHEKQKfylrqsVIDLQTKLQEMQMERDAMADIRRRESQSQEDL-RNQLQNTVHELEAA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 577 LKEKEEQLSRV-TEVQRLQAQ--QADAALEEFkRQVEVNSEKVYGEMKEQMEKVEADLTRS-KSLREKQSKEFLWQLEDA 652
Cdd:pfam15921 158 KCLKEDMLEDSnTQIEQLRKMmlSHEGVLQEI-RSILVDFEEASGKKIYEHDSMSTMHFRSlGSAISKILRELDTEISYL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 653 KQR---YEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEhENQIQeskkrdaqviadmeAQV 729
Cdd:pfam15921 237 KGRifpVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ-ANSIQ--------------SQL 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 730 HKLREELISVNSQRKQQLIELgllreeekqraakdhETAVKKLKAESERVKmELKKTHAAETEMTLEKANSRLKQIEKEY 809
Cdd:pfam15921 302 EIIQEQARNQNSMYMRQLSDL---------------ESTVSQLRSELREAK-RMYEDKIEELEKQLVLANSELTEARTER 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 810 TQKLAKSSQIIAELQTTISSLKEEssRQQLAAERrlqdviqkfEDEKQQLIRD--NDQAIKALQDELETRSHQVRSAEKK 887
Cdd:pfam15921 366 DQFSQESGNLDDQLQKLLADLHKR--EKELSLEK---------EQNKRLWDRDtgNSITIDHLRRELDDRNMEVQRLEAL 434
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1735137067 888 LHHKELEAQEQIMYIRQEYETKFKGLMP-ASLRQELEDTISSLKSQVNFLQKRASILQEELTT 949
Cdd:pfam15921 435 LKAMKSECQGQMERQMAAIQGKNESLEKvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT 497
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
489-688 |
1.38e-05 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 48.89 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 489 LLRQEHALstsktsgviEELEQNICQLKqqvqeseLQRKQQVKDqenkfhmeknhlkhtyekkVHELQSELDKEKEDAQR 568
Cdd:pfam10168 549 LKKHDLAR---------EEIQKRVKLLK-------LQKEQQLQE-------------------LQSLEEERKSLSERAEK 593
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 569 KIHKFEEALKEKEEQLSRVTEV-QRLQAQQAdaaleefkrqVEVNSEKvygEMKEQMEKVEADL----TRSKSLREKQSK 643
Cdd:pfam10168 594 LAEKYEEIKDKQEKLMRRCKKVlQRLNSQLP----------VLSDAER---EMKKELETINEQLkhlaNAIKQAKKKMNY 660
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1735137067 644 EfLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRD 688
Cdd:pfam10168 661 Q-RYQIAKSQSIRKKSSLSLSEKQRKTIKEILKQLGSEIDELIKQ 704
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
249-954 |
1.57e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 249 SRMHEKE--------LDMKTKMMEAKFSEEKLKLQQKHDAEVQKILERK-NNELEELKILYKKKQTETEETIRKLEKKVQ 319
Cdd:pfam15921 98 NELHEKQkfylrqsvIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQlQNTVHELEAAKCLKEDMLEDSNTQIEQLRK 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 320 ILIRDCQVIRETK----ENQITELKKICEQstESLNNDWEKKLHNAVAEMEKD---KFELQKHHTETIQELLEDTNVR-L 391
Cdd:pfam15921 178 MMLSHEGVLQEIRsilvDFEEASGKKIYEH--DSMSTMHFRSLGSAISKILREldtEISYLKGRIFPVEDQLEALKSEsQ 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 392 SKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENSNLQRQKLtQEKLELERCYQITCN-----ELQELKTRRNILHKEKE 466
Cdd:pfam15921 256 NKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI-QSQLEIIQEQARNQNsmymrQLSDLESTVSQLRSELR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 467 HLVNDYEQNVKLLKTKY---DSDINLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVK--DQENKFHMEK 541
Cdd:pfam15921 335 EAKRMYEDKIEELEKQLvlaNSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwDRDTGNSITI 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 542 NHLKHTYEKK---VHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVqrlqAQQADAALEEFKRQVEVNSEKVYg 618
Cdd:pfam15921 415 DHLRRELDDRnmeVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSL----TAQLESTKEMLRKVVEELTAKKM- 489
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 619 eMKEQMEKVEADLTrsKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSL---VRDHDREIEN 695
Cdd:pfam15921 490 -TLESSERTVSDLT--ASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALklqMAEKDKVIEI 566
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 696 LEKQLraanmEHENQIQESKKRDAQVIADMEAQVHKlreeliSVNSqRKQQLIELGLLREeekQRAAKDHETAVKKLKAE 775
Cdd:pfam15921 567 LRQQI-----ENMTQLVGQHGRTAGAMQVEKAQLEK------EIND-RRLELQEFKILKD---KKDAKIRELEARVSDLE 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 776 SERVKMelkkthaaetemtLEKANSRLKQIEKEYTQKlaksSQIIAELQTTISSLKEESSRQQLAaERRLQDVIQKFEDE 855
Cdd:pfam15921 632 LEKVKL-------------VNAGSERLRAVKDIKQER----DQLLNEVKTSRNELNSLSEDYEVL-KRNFRNKSEEMETT 693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 856 KQQLirdnDQAIKALQDELEtrshQVRSAEKKLHHKELEAQEQIMYIRQEYETKfKGLMPA--SLRQELEDTISSLKSQV 933
Cdd:pfam15921 694 TNKL----KMQLKSAQSELE----QTRNTLKSMEGSDGHAMKVAMGMQKQITAK-RGQIDAlqSKIQFLEEAMTNANKEK 764
|
730 740
....*....|....*....|.
gi 1735137067 934 NFLQKRASILQEELTTYQSRR 954
Cdd:pfam15921 765 HFLKEEKNKLSQELSTVATEK 785
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
253-671 |
1.97e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 253 EKELDMKTKMMEAKFSEekLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEeTIRKLEKKVQILIRDCQVIRETK 332
Cdd:TIGR00606 722 EKRRDEMLGLAPGRQSI--IDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLG-TIMPEEESAKVCLTDVTIMERFQ 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 333 ENQITELKKICEQSTESLNNDwekkLHNAVAEMEKDKFELQKHHTETIQELLEdtNVRLSKMEADYVVQMQSTNHMIKEL 412
Cdd:TIGR00606 799 MELKDVERKIAQQAAKLQGSD----LDRTVQQVNQEKQEKQHELDTVVSKIEL--NRKLIQDQQEQIQHLKSKTNELKSE 872
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 413 EGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKYDSDINLLRQ 492
Cdd:TIGR00606 873 KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 493 EHALSTSKTSGVIEELEQnicQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELDKEKEDAQRKIHK 572
Cdd:TIGR00606 953 IHGYMKDIENKIQDGKDD---YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENE 1029
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 573 FEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVeadLTRSKSLREKqskeflwQLEDA 652
Cdd:TIGR00606 1030 LKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEI---KHFKKELREP-------QFRDA 1099
|
410
....*....|....*....
gi 1735137067 653 KQRYEQQIVELKLEHEQEK 671
Cdd:TIGR00606 1100 EEKYREMMIVMRTTELVNK 1118
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
270-603 |
5.13e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 5.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 270 EKLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRETK---ENQITELKKICEQS 346
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKeaiERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 347 TESLNnDWEKKLHNAVAEMEKDkfelqkhhTETIQELLEDTNVRLSKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENS 426
Cdd:TIGR02169 257 TEEIS-ELEKRLEEIEQLLEEL--------NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 427 NLQRQKLTQEKLELERcyqitcnELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKyDSDINLLRQEHALSTSKTSGVIE 506
Cdd:TIGR02169 328 EAEIDKLLAEIEELER-------EIEEERKRRDKLTEEYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 507 ELEQNICQLKQQVQESElQRKQQVKDQENKFhmeknhlkhtyeKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSR 586
Cdd:TIGR02169 400 EINELKRELDRLQEELQ-RLSEELADLNAAI------------AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
330 340
....*....|....*....|....*
gi 1735137067 587 V--------TEVQRLQAQQADAALE 603
Cdd:TIGR02169 467 YeqelydlkEEYDRVEKELSKLQRE 491
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
500-863 |
6.67e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 46.75 E-value: 6.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 500 KTSGVIEELEQNICQLKQQVQESeLQRKQQVKDQENKFHMEKNHLKHTYEkkvhELQSELDkekedAQRkiHKFEEALKE 579
Cdd:PRK04778 102 KAKHEINEIESLLDLIEEDIEQI-LEELQELLESEEKNREEVEQLKDLYR----ELRKSLL-----ANR--FSFGPALDE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 580 KEEQLSrvtevqrlqaqQADAALEEFKRQVE----VNSEKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQR 655
Cdd:PRK04778 170 LEKQLE-----------NLEEEFSQFVELTEsgdyVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAG 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 656 YEQQIVE-LKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAAN---------MEHE----NQIQESKKRDAQV 721
Cdd:PRK04778 239 YRELVEEgYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQeridqlydiLEREvkarKYVEKNSDTLPDF 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 722 IADMEAQVHKLREELISVnsQRKQQLIElgllREEEKQRAakdHETAVKKLKAESERVKMELKKTHAA--ETEMTLEKAN 799
Cdd:PRK04778 319 LEHAKEQNKELKEEIDRV--KQSYTLNE----SELESVRQ---LEKQLESLEKQYDEITERIAEQEIAysELQEELEEIL 389
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1735137067 800 SRLKQIEKEytqklakssqiIAELQTTISSLKEEssrqQLAAERRLQDVIQKFEDEKQQLIRDN 863
Cdd:PRK04778 390 KQLEEIEKE-----------QEKLSEMLQGLRKD----ELEAREKLERYRNKLHEIKRYLEKSN 438
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
271-835 |
8.20e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 8.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 271 KLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQ--STE 348
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEklNIQ 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 349 SLNNDWEKKLHNAVAEMEKDKFELQKHHTETIQEL-LEDTNVRLSKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENSN 427
Cdd:TIGR04523 187 KNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISeLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 428 LQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEhlvNDYEQNVKLLKTKYDSDINLLRQEhalsTSKTSGVIEE 507
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE---QDWNKELKSELKNQEKKLEEIQNQ----ISQNNKIISQ 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 508 LEQNICQLKQQVQESELQrKQQVKDQENKFHMEKNHLKHTYEKKVHELQSeLDKEKEDAQRKIHKFEEALKEKEEQLsrv 587
Cdd:TIGR04523 340 LNEQISQLKKELTNSESE-NSEKQRELEEKQNEIEKLKKENQSYKQEIKN-LESQINDLESKIQNQEKLNQQKDEQI--- 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 588 tEVQRLQAQQADAALEEFKRQVEVNSEKVYGEMKE--QMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKL 665
Cdd:TIGR04523 415 -KKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQdsVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 666 EHEQEKThlLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQ 745
Cdd:TIGR04523 494 KEKELKK--LNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIE 571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 746 QL---IELGLLREEEKQRAAKDHETAVKKLKAESErvKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAE 822
Cdd:TIGR04523 572 ELkqtQKSLKKKQEEKQELIDQKEKEKKDLIKEIE--EKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
570
....*....|...
gi 1735137067 823 LQTTISSLKEESS 835
Cdd:TIGR04523 650 IKETIKEIRNKWP 662
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
495-740 |
8.97e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 8.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 495 ALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKH--TYEKKVHELQSEL---DKEKEDAQRK 569
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaALARRIRALEQELaalEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 570 IHKFEEALKEKEEQLSRVTEVQRLQAQQADAAL-------EEFKRQVEVnSEKVYGEMKEQMEKVEADLTRSKSLREkqs 642
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALllspedfLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRA--- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 643 keflwQLEDAKQRYEQQIVELKLEHEQekthlLQQHSAEKDSLVRDHDREIENLEKQLRaanmehenQIQESKKRDAQVI 722
Cdd:COG4942 168 -----ELEAERAELEALLAELEEERAA-----LEALKAERQKLLARLEKELAELAAELA--------ELQQEAEELEALI 229
|
250
....*....|....*...
gi 1735137067 723 ADMEAQVHKLREELISVN 740
Cdd:COG4942 230 ARLEAEAAAAAERTPAAG 247
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
269-635 |
9.00e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 9.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 269 EEKLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKL---EKKVQILIRDCQVIRETKENQITELKKICEQ 345
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 346 STESLNNDWEKKLHNAVAEMEKDKFELQkhhTETIQELLEDTNVRLSKMEADYvvqmQSTNHMIKELEGRVQQLMGEAEN 425
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQ---IEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 426 SNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYEQnvkllktkydsdINLLRQEHALSTSKTSGVI 505
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS------------LEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 506 EELEQNICQLKQQVQESElQRKQQVKDQENKFHMEKNHLKHTYEKK-------VHELQSELDKEKEDAQRKIHKFEEALK 578
Cdd:TIGR02168 904 RELESKRSELRRELEELR-EKLAQLELRLEGLEVRIDNLQERLSEEysltleeAEALENKIEDDEEEARRRLKRLENKIK 982
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1735137067 579 EkeeqLSRVTEvqrlqaqqadAALEEFKRQvevnsEKVYGEMKEQMEkveaDLTRSK 635
Cdd:TIGR02168 983 E----LGPVNL----------AAIEEYEEL-----KERYDFLTAQKE----DLTEAK 1016
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
286-862 |
9.52e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 9.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 286 LERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRETKENQITELkkiCEQSTESLNndwEKKLHNAVAEM 365
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLL---LIQITEKEN---KMKDLTFLLEE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 366 EKDKF----ELQKHHTETIQELLEDTNVRLSKMEaDYVVQMQSTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELE 441
Cdd:pfam05483 266 SRDKAnqleEKTKLQDENLKELIEKKDHLTKELE-DIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 442 RCYQITCNELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKYDSDINLLRQEHALSTSKTSGvIEELEQNICQLKQQVQE 521
Cdd:pfam05483 345 AAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVE-LEELKKILAEDEKLLDE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 522 SelQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEV----------- 590
Cdd:pfam05483 424 K--KQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELtahcdklllen 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 591 QRLQAQQADAALEEFKRQVEVNSEKVYGE-MKEQMEKVEADLTRSKSLREKQSKEFLWQLEDakqryeqqiVELKLEHEQ 669
Cdd:pfam05483 502 KELTQEASDMTLELKKHQEDIINCKKQEErMLKQIENLEEKEMNLRDELESVREEFIQKGDE---------VKCKLDKSE 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 670 EKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQIQESKKRDAQVIAD------MEAQVHKLREELISVNSQ- 742
Cdd:pfam05483 573 ENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAEnkqlnaYEIKVNKLELELASAKQKf 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 743 -----------RKQQLIELGLLREEEKQRAAKDHETAVKK---LKAESERVKM-ELKKTHAAETEMTLEKANSRLKQiek 807
Cdd:pfam05483 653 eeiidnyqkeiEDKKISEEKLLEEVEKAKAIADEAVKLQKeidKRCQHKIAEMvALMEKHKHQYDKIIEERDSELGL--- 729
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 1735137067 808 eYTQKLAKSSQIIAELQTTISSLKEE--SSRQQLAAERRLQDVIQKFEDEKQQLIRD 862
Cdd:pfam05483 730 -YKNKEQEQSSAKAALEIELSNIKAEllSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
238-946 |
1.46e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.87 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 238 KASSLHDDHFLSRMHEKELDMKTKMMEAKFS-EEKLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRK--- 313
Cdd:pfam05483 66 KDSDFENSEGLSRLYSKLYKEAEKIKKWKVSiEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQEnkd 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 314 LEKKVQILIRDCQVIRET--KENQITELKKICEQSTESLNNDWEKKLHNAVAEMEKDKFELQKHHTETIQELLEDTNvRL 391
Cdd:pfam05483 146 LIKENNATRHLCNLLKETcaRSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHE-KI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 392 SKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVND 471
Cdd:pfam05483 225 QHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMS 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 472 YEQNVKLLKTkydsdinlLRQEHALSTsktsgvieeleQNICQLKQQvQESELQRKQQVKDQENKFHMEKNHLKHTYEKK 551
Cdd:pfam05483 305 LQRSMSTQKA--------LEEDLQIAT-----------KTICQLTEE-KEAQMEELNKAKAAHSFVVTEFEATTCSLEEL 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 552 VHELQSELdkEKEDAQRKIHKFEEALKEKE-EQLSRVTEVQRLQAQQADAALEEfkRQVEVNSEKVYGEMKEQMEKVEAD 630
Cdd:pfam05483 365 LRTEQQRL--EKNEDQLKIITMELQKKSSElEEMTKFKNNKEVELEELKKILAE--DEKLLDEKKQFEKIAEELKGKEQE 440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 631 LTRSKSLREKQSKEFLWQL---EDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEH 707
Cdd:pfam05483 441 LIFLLQAREKEIHDLEIQLtaiKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQE 520
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 708 E-NQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIEL--GLLREEEKQRAAKDHETAVKKLKAESERVKMELK 784
Cdd:pfam05483 521 DiINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVkcKLDKSEENARSIEYEVLKKEKQMKILENKCNNLK 600
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 785 KTHAAETEMT--LEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQD---VIQKFEDEKQQL 859
Cdd:pfam05483 601 KQIENKNKNIeeLHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDkkiSEEKLLEEVEKA 680
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 860 IRDNDQAIKaLQDELETRSHQVRSAEKKLHHKELEAQEQIMYIRQEYETKFKG--LMPASLRQELEDTISSLKSQVNFLQ 937
Cdd:pfam05483 681 KAIADEAVK-LQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNkeQEQSSAKAALEIELSNIKAELLSLK 759
|
....*....
gi 1735137067 938 KRASILQEE 946
Cdd:pfam05483 760 KQLEIEKEE 768
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
401-745 |
1.46e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 401 QMQSTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVN--DYEQNV-- 476
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNegDHLRNVqt 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 477 -----KLLKTKYDSDINLLRQEhalstsktsgvIEELEQNICQLKQQVQESELQrKQQVKDQENKFHMEKNHLKHTYEKK 551
Cdd:pfam15921 549 ecealKLQMAEKDKVIEILRQQ-----------IENMTQLVGQHGRTAGAMQVE-KAQLEKEINDRRLELQEFKILKDKK 616
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 552 VHELQsELDKEKEDAQRKIHKFEEAlkeKEEQLSRVTEVQrlqaQQADAALEEFKrqvevNSEKVYGEMKEQMEKVEADL 631
Cdd:pfam15921 617 DAKIR-ELEARVSDLELEKVKLVNA---GSERLRAVKDIK----QERDQLLNEVK-----TSRNELNSLSEDYEVLKRNF 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 632 TRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLE-----HEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANME 706
Cdd:pfam15921 684 RNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMegsdgHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKE 763
|
330 340 350
....*....|....*....|....*....|....*....
gi 1735137067 707 hENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQ 745
Cdd:pfam15921 764 -KHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
449-899 |
1.49e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 449 NELQELKTRRNILH---KEKEHLVNDYEQNVKLLKTKYDSDINLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQ 525
Cdd:pfam12128 251 NTLESAELRLSHLHfgyKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 526 RKQQVKDQENKFHMEKNHLKHTYEKKvhELQSELDKEKEDAQRKIHKFEEALKEKEEQlSRVTEVQRLQaQQADAALEEF 605
Cdd:pfam12128 331 HGAFLDADIETAAADQEQLPSWQSEL--ENLEERLKALTGKHQDVTAKYNRRRSKIKE-QNNRDIAGIK-DKLAKIREAR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 606 KRQVEVNS---EKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYE----QQIVELKLEHEQEKthlLQQH 678
Cdd:pfam12128 407 DRQLAVAEddlQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPElllqLENFDERIERAREE---QEAA 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 679 SAEKDSLVRDHDREIENLEKQLRAANMEHEnQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIELglLREEEK 758
Cdd:pfam12128 484 NAEVERLQSELRQARKRRDQASEALRQASR-RLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKV--ISPELL 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 759 QRAAKDHETAVKKLKAESE--RVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELqTTISSLKEESSR 836
Cdd:pfam12128 561 HRTDLDPEVWDGSVGGELNlyGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQL-VQANGELEKASR 639
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1735137067 837 QQLAAERRLQ---DVIQKFEDEKQQLIRDNDQAIKALQDELETRSHQVRSAEKKLHHKELEAQEQI 899
Cdd:pfam12128 640 EETFARTALKnarLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQ 705
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
504-640 |
2.29e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.20 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 504 VIEELEQNICQLKQQVQESELQRKQQvkdqeNKFHMEknhlkhtYEKKVHELQSELDKEKEDAQRKIHK-FEEALKEKEE 582
Cdd:PRK00409 521 LIASLEELERELEQKAEEAEALLKEA-----EKLKEE-------LEEKKEKLQEEEDKLLEEAEKEAQQaIKEAKKEADE 588
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1735137067 583 QLSRVTEVQRLQ-----AQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLREK 640
Cdd:PRK00409 589 IIKELRQLQKGGyasvkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
651-858 |
2.50e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 651 DAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLvrdhdREIENLEKQLRAANM----------EHENQIQESKKRDAQ 720
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALL-----KQLAALERRIAALARriraleqelaALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 721 VIADMEAQVHKLREELISVNSQRKQQLIELGLLREEEKQ--RAAKDHETAVKKLKAESERVKMELKKthAAETEMTLEKA 798
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDavRRLQYLKYLAPARREQAEELRADLAE--LAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1735137067 799 NSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQ------LAAERRLQDVIQKFEDEKQQ 858
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAaelaelQQEAEELEALIARLEAEAAA 238
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
415-857 |
3.47e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 415 RVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYE-QNVKLLKTKYDSDINLLRQE 493
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQElEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 494 HAlstsktsgVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKkVHELQSELDKEKEDAQRKIHKF 573
Cdd:COG4717 155 LE--------ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE-LQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 574 EEALKEKEEQLSRVTEVQRLQAQQAD-------AALEEFKRQVEVNSEKVYGEMKEQ---MEKVEADLTRSKSLREKQSK 643
Cdd:COG4717 226 EEELEQLENELEAAALEERLKEARLLlliaaalLALLGLGGSLLSLILTIAGVLFLVlglLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 644 EFLWQLED---AKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDslVRDHDREIENLEKQLRAANMEHE-----NQIQESK 715
Cdd:COG4717 306 ELQALPALeelEEEELEELLAALGLPPDLSPEELLELLDRIEE--LQELLREAEELEEELQLEELEQEiaallAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 716 KRDAQVIADMEAQVHKLREELISVNSQrkqqlielglLREEEKQRAAKDHETAVKKLKAESERVKMELKKTHAAETEMTL 795
Cdd:COG4717 384 EEELRAALEQAEEYQELKEELEELEEQ----------LEELLGELEELLEALDEEELEEELEELEEELEELEEELEELRE 453
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1735137067 796 EKA--NSRLKQIEKEytQKLAKSSQIIAELQTTISSLKEESSRQQLAAErRLQDVIQKFEDEKQ 857
Cdd:COG4717 454 ELAelEAELEQLEED--GELAELLQELEELKAELRELAEEWAALKLALE-LLEEAREEYREERL 514
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
270-875 |
3.54e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 3.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 270 EKLKLQQKHDAEVQKILERKNnelEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRETKENQ---ITELKKICEQS 346
Cdd:pfam12128 340 ETAAADQEQLPSWQSELENLE---ERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIreaRDRQLAVAEDD 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 347 TESLNNDWEKKLHNAVAEMEKDKFELQkhhtetiqELLEDTNVRLSKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENS 426
Cdd:pfam12128 417 LQALESELREQLEAGKLEFNEEEYRLK--------SRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVE 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 427 NLQRQKL--------TQEKLELERCY----QITCNELQE-LKTRRNILHKEKEHLVNDYEQNV-KLLKTKYdsdinLLRQ 492
Cdd:pfam12128 489 RLQSELRqarkrrdqASEALRQASRRleerQSALDELELqLFPQAGTLLHFLRKEAPDWEQSIgKVISPEL-----LHRT 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 493 E-HALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHmEKNHLKHTYEKKVHELQSELDKEKEDAQRKIH 571
Cdd:pfam12128 564 DlDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAE-EALQSAREKQAAAEEQLVQANGELEKASREET 642
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 572 KFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEvnsekvygemkEQMEKVEAdltrskslrekQSKEFLWQLED 651
Cdd:pfam12128 643 FARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSAN-----------ERLNSLEA-----------QLKQLDKKHQA 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 652 AKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQIqESKKRDAQVIADMEAQVHK 731
Cdd:pfam12128 701 WLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDL-ASLGVDPDVIAKLKREIRT 779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 732 LREELISVNSQRKQQLIELGLLREEEKQRAAKdHETAVKKLKAESERVKMELKKThAAETEMTLEKANSRLKQIEKEyTQ 811
Cdd:pfam12128 780 LERKIERIAVRRQEVLRYFDWYQETWLQRRPR-LATQLSNIERAISELQQQLARL-IADTKLRRAKLEMERKASEKQ-QV 856
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1735137067 812 KLAKSSQIIAELQTTISSLKEESSRQQLAAErrlqdvIQKFEDEKQQLIRDNDQAIKALQDELE 875
Cdd:pfam12128 857 RLSENLRGLRCEMSKLATLKEDANSEQAQGS------IGERLAQLEDLKLKRDYLSESVKKYVE 914
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
497-896 |
3.54e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 44.36 E-value: 3.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 497 STSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHtyeKKVHELQSELDKEKEDAQRKIHKFEEA 576
Cdd:pfam09731 71 VVSAVTGESKEPKEEKKQVKIPRQSGVSSEVAEEEKEATKDAAEAKAQLP---KSEQEKEKALEEVLKEAISKAESATAV 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 577 LKEKEEQLSRVTEVQrlqAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRY 656
Cdd:pfam09731 148 AKEAKDDAIQAVKAH---TDSLKEASDTAEISREKATDSALQKAEALAEKLKEVINLAKQSEEEAAPPLLDAAPETPPKL 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 657 EQQIVEL--KLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQiqeSKKRDAQVIADMEAQVHKLRE 734
Cdd:pfam09731 225 PEHLDNVeeKVEKAQSLAKLVDQYKELVASERIVFQQELVSIFPDIIPVLKEDNLL---SNDDLNSLIAHAHREIDQLSK 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 735 ELISvnsqrkqqlielglLREEEKQRAAKdhetAVKKLKAESERVKMELKKthAAETEMTLEKANSRLKQIEKEytQKLA 814
Cdd:pfam09731 302 KLAE--------------LKKREEKHIER----ALEKQKEELDKLAEELSA--RLEEVRAADEAQLRLEFERER--EEIR 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 815 KSSQiiaelqttiSSLKEESSRQQLAAERRLQDVIqkfEDEKQQLIRDNDQAIK-ALQDELETRSHQVRSAEKKLhhKEL 893
Cdd:pfam09731 360 ESYE---------EKLRTELERQAEAHEEHLKDVL---VEQEIELQREFLQDIKeKVEEERAGRLLKLNELLANL--KGL 425
|
...
gi 1735137067 894 EAQ 896
Cdd:pfam09731 426 EKA 428
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
614-954 |
4.18e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 614 EKVYGEMKEQMEKVEADLTRSKSLREKQskeflwqledaKQRYEQQIVELKLEheqekthlLQQHSAEKDSLV---RDHD 690
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEKQ-----------KFYLRQSVIDLQTK--------LQEMQMERDAMAdirRRES 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 691 REIENLEKQLRaaNMEHENQIQESKKRDaqVIADMEAQVHKLREELISvnsqrkqqliELGLLREeekqraakdhetaVK 770
Cdd:pfam15921 138 QSQEDLRNQLQ--NTVHELEAAKCLKED--MLEDSNTQIEQLRKMMLS----------HEGVLQE-------------IR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 771 KLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESsrqqlaaERRLQDVIQ 850
Cdd:pfam15921 191 SILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSES-------QNKIELLLQ 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 851 KFEDEKQQLIRDNDQAIKALQDELETRSHQVRSAEKKLHHKELEAQEQ-IMYIRQEYETKFkglMPASLRQELEDTISSL 929
Cdd:pfam15921 264 QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnSMYMRQLSDLES---TVSQLRSELREAKRMY 340
|
330 340
....*....|....*....|....*
gi 1735137067 930 KSQVNFLQKRASILQEELTTYQSRR 954
Cdd:pfam15921 341 EDKIEELEKQLVLANSELTEARTER 365
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
517-945 |
4.51e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.30 E-value: 4.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 517 QQVQESELQRKQQVKDQENKFHMEKNHLKHTYEK--KVHELQSELDKEK--EDAQRKIHKFEEALKEKEEQLSRVTEVqR 592
Cdd:COG5022 820 IKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRslKAKKRFSLLKKETiyLQSAQRVELAERQLQELKIDVKSISSL-K 898
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 593 LQAQQADAALEEFKRQVEvNSEKVYGEMKEQMEKVEADLTRSKSLREKQSKEflwqledakqrYEQQIVELKLeHEQEKT 672
Cdd:COG5022 899 LVNLELESEIIELKKSLS-SDLIENLEFKTELIARLKKLLNNIDLEEGPSIE-----------YVKLPELNKL-HEVESK 965
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 673 hlLQQHSAEKDSLVRDHDREIENLEKQLraANMEHENQIQESKKRDAQVIADMEAQVHKLREElisvnSQRKQQLIELGL 752
Cdd:COG5022 966 --LKETSEEYEDLLKKSTILVREGNKAN--SELKNFKKELAELSKQYGALQESTKQLKELPVE-----VAELQSASKIIS 1036
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 753 LREEEKQRaakdhETAVKKLKAESERVKMELKKTHAAeteMTLEKANSRLKQIEKEYTQK---LAKSSQIIAELQTTISS 829
Cdd:COG5022 1037 SESTELSI-----LKPLQKLKGLLLLENNQLQARYKA---LKLRRENSLLDDKQLYQLEStenLLKTINVKDLEVTNRNL 1108
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 830 LKEESSRQQLAAER---RLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRShQVRSAEKKLHHKELEAQ-EQIMYIRQE 905
Cdd:COG5022 1109 VKPANVLQFIVAQMiklNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLF-WEANLEALPSPPPFAALsEKRLYQSAL 1187
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1735137067 906 YETKFKGLmpASLRQELEDTISSLKSQVNFLQKRASILQE 945
Cdd:COG5022 1188 YDEKSKLS--SSEVNDLKNELIALFSKIFSGWPRGDKLKK 1225
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
723-953 |
7.21e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 7.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 723 ADMEAQVHKLREELiSVNSQRKQQLIELGLlREEEKQRAAKDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRL 802
Cdd:COG3206 114 ASREAAIERLRKNL-TVEPVKGSNVIEISY-TSPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKEL 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 803 KQIEKEYTQKLAKSSQIIAELQTTISSLK-EESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQD----ELETR 877
Cdd:COG3206 192 EEAEAALEEFRQKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpviqQLRAQ 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 878 SHQVRSAEKKL-------HHKELEAQEQIMYIRQEyetkfkglmpasLRQELEDTISSLKSQVNFLQKRASILQEELTTY 950
Cdd:COG3206 272 LAELEAELAELsarytpnHPDVIALRAQIAALRAQ------------LQQEAQRILASLEAELEALQAREASLQAQLAQL 339
|
...
gi 1735137067 951 QSR 953
Cdd:COG3206 340 EAR 342
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
505-736 |
9.10e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 9.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 505 IEELEQNICQLKQQVQ-----ESELQRKQQVKDQENKFHMEKNHLKH-TYEKKVHELQSELDKEKEDAQRKIHKFEEALK 578
Cdd:COG4913 237 LERAHEALEDAREQIEllepiRELAERYAAARERLAELEYLRAALRLwFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 579 EKEEQLSRVTEVQRLQAQQADAALEEFKRQVEvnsekvygemkeqmekveaDLTRSKSLREKQSKEFLWQLEDAKQRYEQ 658
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEQLEREIE-------------------RLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 659 QIVELKLEHEQEKTHL--LQQHSAEKDSLVRDHDREIENLEKQLRAAnmehENQIQESKKRDaqviADMEAQVHKLREEL 736
Cdd:COG4913 378 SAEEFAALRAEAAALLeaLEEELEALEEALAEAEAALRDLRRELREL----EAEIASLERRK----SNIPARLLALRDAL 449
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
513-900 |
1.01e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 513 CQLKQQVQE--SELQRKQQVKDQENKFHMEKNHLKHTYekKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEV 590
Cdd:pfam12128 230 IQAIAGIMKirPEFTKLQQEFNTLESAELRLSHLHFGY--KSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELN 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 591 QRLQAqqADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLR------EKQSKEFLWQLEDAKQRYEQQIVELK 664
Cdd:pfam12128 308 GELSA--ADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQselenlEERLKALTGKHQDVTAKYNRRRSKIK 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 665 LEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQ--------------IQESKKRDAQVIADME---- 726
Cdd:pfam12128 386 EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGklefneeeyrlksrLGELKLRLNQATATPElllq 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 727 -----AQVHKLREELISVNSQRkqqlieLGLLREEEKQRAAKDHetAVKKLKAESERVKmELKKTHAAETEMTLEKANSR 801
Cdd:pfam12128 466 lenfdERIERAREEQEAANAEV------ERLQSELRQARKRRDQ--ASEALRQASRRLE-ERQSALDELELQLFPQAGTL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 802 LKQIEKE---YTQKLAKssqIIAELQTTISSLKEESSRQQLAAERRLQDV--------IQKFEDEKQQLIRDNDQAIKAL 870
Cdd:pfam12128 537 LHFLRKEapdWEQSIGK---VISPELLHRTDLDPEVWDGSVGGELNLYGVkldlkridVPEWAASEEELRERLDKAEEAL 613
|
410 420 430
....*....|....*....|....*....|
gi 1735137067 871 QDELEtrSHQVRSAEKKLHHKELEAQEQIM 900
Cdd:pfam12128 614 QSARE--KQAAAEEQLVQANGELEKASREE 641
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
280-946 |
1.25e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 280 AEVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRET-KENQITELKKICEQSTESLNNDWEKKL 358
Cdd:TIGR00618 183 LMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAlQQTQQSHAYLTQKREAQEEQLKKQQLL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 359 HNAVAEMEKDKFELqKHHTETIQELLEDTNVRLSKMEADYVVQMqstNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKL 438
Cdd:TIGR00618 263 KQLRARIEELRAQE-AVLEETQERINRARKAAPLAAHIKAVTQI---EQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 439 ELERCYQITcNELQELKTRRNILHKEKEHLVNDYEQNVKLLK--TKYDSDINLLRQEHALSTSKTSGVIEELEQnicQLK 516
Cdd:TIGR00618 339 SIEEQRRLL-QTLHSQEIHIRDAHEVATSIREISCQQHTLTQhiHTLQQQKTTLTQKLQSLCKELDILQREQAT---IDT 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 517 QQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQ 596
Cdd:TIGR00618 415 RTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 597 QADAALEE----FKRQVEVNSEKV-YGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEK 671
Cdd:TIGR00618 495 RLLELQEEpcplCGSCIHPNPARQdIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSI 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 672 -THLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEH-ENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIE 749
Cdd:TIGR00618 575 lTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAcEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLT 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 750 LGLLREEEKQRAAKDHEtAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEkeytQKLAKSSQIIAELQTTISS 829
Cdd:TIGR00618 655 LTQERVREHALSIRVLP-KELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELE----THIEEYDREFNEIENASSS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 830 LKEESSRQQLAAERRLQDVIQKFE------------------------DEKQQLIRDNDQAIKALQDELETRSHQVRSAE 885
Cdd:TIGR00618 730 LGSDLAAREDALNQSLKELMHQARtvlkarteahfnnneevtaalqtgAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG 809
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1735137067 886 KKLHHKELEAQEQIMYIRQEYET-----KFKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEE 946
Cdd:TIGR00618 810 QEIPSDEDILNLQCETLVQEEEQflsrlEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
490-722 |
1.40e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 490 LRQEHALSTSKTSGVIEELEQNICQLKQQVQESElQRKQQVKDQENKFHMEKNHLkhTYEKKVHELQSELDK---EKEDA 566
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQKNGLVDLSEEAK--LLLQQLSELESQLAEaraELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 567 QRKIHKFEEALKEKEEQLSRVTEVQRLqaQQADAALEEFKRQVEVNSEKvYGEMKEQMEKVEADLTRSKSLREKQSKEFL 646
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQSPVI--QQLRAQLAELEAELAELSAR-YTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 647 WQLEDAKQRYEQQIVELKLEHEQEKTHL--LQQHSAEKDSLVRDHD--REI-ENLEKQLRAANMEhenqiQESKKRDAQV 721
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLaeLPELEAELRRLEREVEvaRELyESLLQRLEEARLA-----EALTVGNVRV 390
|
.
gi 1735137067 722 I 722
Cdd:COG3206 391 I 391
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
473-859 |
1.45e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 473 EQNVKLLKTKYDSDINLLRQEHALSTSktsgvIEELEQNICQLKQQVQEseLQRKQQVKDQENKFHMEKNHLKH------ 546
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEE-----LEELEAELEELREELEK--LEKLLQLLPLYQELEALEAELAElperle 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 547 TYEKKVHELQsELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQ----RLQAQQADAALEEFKRQVEVNSEKVyGEMKE 622
Cdd:COG4717 150 ELEERLEELR-ELEEELEELEAELAELQEELEELLEQLSLATEEElqdlAEELEELQQRLAELEEELEEAQEEL-EELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 623 QMEKVEADLTRSKSLREKQSKEFLWQLEDA--------------------KQRYEQQIVELKLEHEQEKTHLLQQHSAEK 682
Cdd:COG4717 228 ELEQLENELEAAALEERLKEARLLLLIAAAllallglggsllsliltiagVLFLVLGLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 683 DSLVRDHDREIENLEKQLRAANMEHENQIQE--SKKRDAQVIADMEAQVHKLREEL-ISVNSQRKQQLIELG-------- 751
Cdd:COG4717 308 QALPALEELEEEELEELLAALGLPPDLSPEEllELLDRIEELQELLREAEELEEELqLEELEQEIAALLAEAgvedeeel 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 752 ---LLREEEKQRAAKDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELqttis 828
Cdd:COG4717 388 raaLEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAEL----- 462
|
410 420 430
....*....|....*....|....*....|.
gi 1735137067 829 slkeessrQQLAAERRLQDVIQKFEDEKQQL 859
Cdd:COG4717 463 --------EQLEEDGELAELLQELEELKAEL 485
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
248-896 |
1.77e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 248 LSRMHEKELDMKTKMMEAKFSEEKLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQV 327
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 328 iretkENQITELKKIcEQSTESLNNDWEKKLHNAVAEMEKDKFELQKHHTETIQElLEDTNVRLSKMEADYVVQMQSTNH 407
Cdd:TIGR00606 268 -----DNEIKALKSR-KKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVRE-KERELVDCQRELEKLNKERRLLNQ 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 408 MIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITC------------NELQELKTRRNILHKEKEHLVNDYEQN 475
Cdd:TIGR00606 341 EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGfergpfserqikNFHTLVIERQEDEAKTAAQLCADLQSK 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 476 VKLLK---TKYDSDINLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESE--LQRKQQVKDQENKFH-MEKNHLKHTYE 549
Cdd:TIGR00606 421 ERLKQeqaDEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDriLELDQELRKAERELSkAEKNSLTETLK 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 550 KKVHELQSeldkEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEA 629
Cdd:TIGR00606 501 KEVKSLQN----EKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLE 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 630 DLTRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSL-VRDHDREIENLEKQLRAAN---- 704
Cdd:TIGR00606 577 DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCgSQDEESDLERLKEEIEKSSkqra 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 705 ---------------MEHENQ--------IQESKKRDAQVIADMEAQV------HKLREELISVNSQRKQQLIELGLLRE 755
Cdd:TIGR00606 657 mlagatavysqfitqLTDENQsccpvcqrVFQTEAELQEFISDLQSKLrlapdkLKSTESELKKKEKRRDEMLGLAPGRQ 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 756 EEKQRAAKDHETAVKKLKAES-----------------ERVKMELKKTHAAETEMT-LEKANSRLKQIEKEYTQKLAKSS 817
Cdd:TIGR00606 737 SIIDLKEKEIPELRNKLQKVNrdiqrlkndieeqetllGTIMPEEESAKVCLTDVTiMERFQMELKDVERKIAQQAAKLQ 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 818 QIiaELQTTISSLKEESSRQQlaaeRRLQDVIQKFEdEKQQLIRDNDQAIKALQDEL-ETRSHQVRSAEKKLHHKELEAQ 896
Cdd:TIGR00606 817 GS--DLDRTVQQVNQEKQEKQ----HELDTVVSKIE-LNRKLIQDQQEQIQHLKSKTnELKSEKLQIGTNLQRRQQFEEQ 889
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
553-844 |
2.02e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 553 HELQSELDKEKEDAQRKIHKFEEALKEKEEQLS---RVTEVQR---LQAQQADAALEEFKRQVEV------NSEKVYGEM 620
Cdd:COG3096 367 EEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqQALDVQQtraIQYQQAVQALEKARALCGLpdltpeNAEDYLAAF 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 621 KEQMEKVEADLtrsKSLREKQSKEflwqlEDAKQRYEQ--QIVELKLEH-----------EQEKTHLLQQHSAEKDSLVR 687
Cdd:COG3096 447 RAKEQQATEEV---LELEQKLSVA-----DAARRQFEKayELVCKIAGEversqawqtarELLRRYRSQQALAQRLQQLR 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 688 DHDREIENLEKQLRAAnmehENQIQESKKRDAQVIADmeaqvhklREELISVNSQRKQQLIELGLLREEEKQRAAkdhet 767
Cdd:COG3096 519 AQLAELEQRLRQQQNA----ERLLEEFCQRIGQQLDA--------AEELEELLAELEAQLEELEEQAAEAVEQRS----- 581
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1735137067 768 avkKLKAESERVKMELKKThaAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKE-ESSRQQLAAERR 844
Cdd:COG3096 582 ---ELRQQLEQLRARIKEL--AARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREaTVERDELAARKQ 654
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
264-861 |
2.04e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 264 EAKFSEEKLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKLEkKVQILIRDCQVIRETKENQITELKKIc 343
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE-KLEKEVKELEELKEEIEELEKELESL- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 344 EQSTESLNNDWeKKLHNAVAEMEKDKFELQKHHTEtIQEL--LEDTNVRLSKMEADYVVQMQSTNHMIKELEGR---VQQ 418
Cdd:PRK03918 251 EGSKRKLEEKI-RELEERIEELKKEIEELEEKVKE-LKELkeKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEingIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 419 LMGEAENSNLQRQKLTQEKLELERCYQI-------------TCNELQELKTRRNILHKEKehlVNDYEQNVKLLKTKYDS 485
Cdd:PRK03918 329 RIKELEEKEERLEELKKKLKELEKRLEEleerhelyeeakaKKEELERLKKRLTGLTPEK---LEKELEELEKAKEEIEE 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 486 DINLLRQEhalstsktsgvIEELEQNICQLKQQVQE-SELQRKQQVKDQENKFHMEKNhLKHTYEKKVhelqSELDKEKE 564
Cdd:PRK03918 406 EISKITAR-----------IGELKKEIKELKKAIEElKKAKGKCPVCGRELTEEHRKE-LLEEYTAEL----KRIEKELK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 565 DAQRKIHKFEEALKEKEEQLSRVTEVQRL-----QAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLRE 639
Cdd:PRK03918 470 EIEEKERKLRKELRELEKVLKKESELIKLkelaeQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 640 KqskeflwqLEDAKQRYEQQIVELKlEHEQEKTHLLQQHSAEKDSLVRDHDREIENLE----KQLRAANMEHENQIQESK 715
Cdd:PRK03918 550 K--------LEELKKKLAELEKKLD-ELEEELAELLKELEELGFESVEELEERLKELEpfynEYLELKDAEKELEREEKE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 716 krdaqvIADMEAQVHKLREELISVNS---QRKQQLIELGLLREEEKQRAAKDHETavkKLKAESERVKMELK--KTHAAE 790
Cdd:PRK03918 621 ------LKKLEEELDKAFEELAETEKrleELRKELEELEKKYSEEEYEELREEYL---ELSRELAGLRAELEelEKRREE 691
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1735137067 791 TEMTLEKANSRLKQIEK--EYTQKLAKSSQIIAELQTTISSLKEESSRQQLA-AERRLQDVIQKFEDEKQQLIR 861
Cdd:PRK03918 692 IKKTLEKLKEELEEREKakKELEKLEKALERVEELREKVKKYKALLKERALSkVGEIASEIFEELTEGKYSGVR 765
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
549-810 |
2.41e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 549 EKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQaqqadaaLEEFKRQVEVNSEKVYGEMKEQMEKVE 628
Cdd:PRK05771 38 EELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKS-------LEELIKDVEEELEKIEKEIKELEEEIS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 629 adltrskslrekqskeflwQLEDAKQRYEQQIVELK--------LEHEQEKTHLlqqhsaekdsLVRDHDREIENLEKQL 700
Cdd:PRK05771 111 -------------------ELENEIKELEQEIERLEpwgnfdldLSLLLGFKYV----------SVFVGTVPEDKLEELK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 701 RAANMEHENQIQESKKRDAQVIADMEAQVHKLREELisvnsqRKQQLIELGLLREEEKQRAAKDHETAVKKLKAESERVK 780
Cdd:PRK05771 162 LESDVENVEYISTDKGYVYVVVVVLKELSDEVEEEL------KKLGFERLELEEEGTPSELIREIKEELEEIEKERESLL 235
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1735137067 781 MELKKTHAAET----------EMTLEKANSRLKQIEKEYT 810
Cdd:PRK05771 236 EELKELAKKYLeellalyeylEIELERAEALSKFLKTDKT 275
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
264-833 |
2.45e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 264 EAKFSEEKLKLQQKHDAEVQKILERKNNELEELKILYK---KKQTETEETIRKLEKKVQILIRDCQVIRETKENQITELK 340
Cdd:TIGR04523 48 ELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKdlnDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELN 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 341 KICEQSTES-----LNNDWEKKLHNAVAEM---------EKDKFELQKHHTET----IQELLEDTNVRLSKMEADYVVqM 402
Cdd:TIGR04523 128 KLEKQKKENkknidKFLTEIKKKEKELEKLnnkyndlkkQKEELENELNLLEKeklnIQKNIDKIKNKLLKLELLLSN-L 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 403 QSTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYEQNVKLLKTK 482
Cdd:TIGR04523 207 KKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKEL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 483 YDSDINLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQ------QVKDQENKFHMEKNHLKHTYEKKVHELq 556
Cdd:TIGR04523 287 EKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQnnkiisQLNEQISQLKKELTNSESENSEKQREL- 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 557 seldKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVnsekvygeMKEQMEKVEADLTRSKS 636
Cdd:TIGR04523 366 ----EEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK--------LQQEKELLEKEIERLKE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 637 LREKQSKEFlwqledakQRYEQQIVELKL---EHEQEKTHLLQQHSAEKDSlVRDHDREIENLEKQLRAANMEHENQIQE 713
Cdd:TIGR04523 434 TIIKNNSEI--------KDLTNQDSVKELiikNLDNTRESLETQLKVLSRS-INKIKQNLEQKQKELKSKEKELKKLNEE 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 714 SKKRDAQViADMEAQVHKLREELISVNSQRKQQLIELGLLREEEKQraaKDHETAVKKLKAESERVKMELKKTHaaETEM 793
Cdd:TIGR04523 505 KKELEEKV-KDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNK---DDFELKKENLEKEIDEKNKEIEELK--QTQK 578
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1735137067 794 TLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEE 833
Cdd:TIGR04523 579 SLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
719-947 |
2.52e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 719 AQVIADMEAQVHKLREELISVNSQRKQQLIElgllrEEEKQRAAKDHETAVKKLKAESERVKMELkkthaAETEMTLEKA 798
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKE-----EKALLKQLAALERRIAALARRIRALEQEL-----AALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 799 NSRLKQIEKEYTQKLAKSSQIIAELQTT--ISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIrdndQAIKALQDELET 876
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLgrQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA----EELRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1735137067 877 RSHQVRSAEKKLHHKELEAQEQIMYIRQEYETKfkglmpASLRQELEDTISSLKSQVNFLQKRASILQEEL 947
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAER------QKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
301-832 |
2.74e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 301 KKKQTETEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLN-NDWEKKLHNAVAEMEKDKFEL------Q 373
Cdd:TIGR00606 583 SKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGsQDEESDLERLKEEIEKSSKQRamlagaT 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 374 KHHTETIQELLEDTNVRLSKMEADYVVQMQsTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLEL-------ERCYQI 446
Cdd:TIGR00606 663 AVYSQFITQLTDENQSCCPVCQRVFQTEAE-LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglapgrQSIIDL 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 447 TCNELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKydsdinLLRQEHALSTSKTSGVIE----ELEQNICQLKQQVQES 522
Cdd:TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTI------MPEEESAKVCLTDVTIMErfqmELKDVERKIAQQAAKL 815
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 523 ELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQseldKEKEDAQRKIHKFEEALKE-KEEQLSRVTEVQRlqAQQADAA 601
Cdd:TIGR00606 816 QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNR----KLIQDQQEQIQHLKSKTNElKSEKLQIGTNLQR--RQQFEEQ 889
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 602 LEEFKRQVEvnseKVYGEMKEQMEKVEADLTRSKSLREKQsKEFLWQLEDAKQRYEQQIVELKLEHEQEKTH---LLQQH 678
Cdd:TIGR00606 890 LVELSTEVQ----SLIREIKDAKEQDSPLETFLEKDQQEK-EELISSKETSNKKAQDKVNDIKEKVKNIHGYmkdIENKI 964
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 679 SAEKDSLVRDHDREIENLEKQLrAANMEHENQIQESKKRDAQVIADMEAQ---------VHKLREELISVNSQRKQQLIE 749
Cdd:TIGR00606 965 QDGKDDYLKQKETELNTVNAQL-EECEKHQEKINEDMRLMRQDIDTQKIQerwlqdnltLRKRENELKEVEEELKQHLKE 1043
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 750 LGLLREEEKQRAAkdhetavKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISS 829
Cdd:TIGR00606 1044 MGQMQVLQMKQEH-------QKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELV 1116
|
...
gi 1735137067 830 LKE 832
Cdd:TIGR00606 1117 NKD 1119
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
549-773 |
4.06e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 549 EKKVHELQSELD---KEKEDAQRKIHKFEEALKEKEEQLSRVT-EVQRLQAQQadAALEEFKRQVEVNSEKVYGEMKEQM 624
Cdd:COG4942 26 EAELEQLQQEIAeleKELAALKKEEKALLKQLAALERRIAALArRIRALEQEL--AALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 625 EKVEADLTRSKSLREKQSKEFLWQLEDAKQRYE-QQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEkQLRAA 703
Cdd:COG4942 104 EELAELLRALYRLGRQPPLALLLSPEDFLDAVRrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE-ALLAE 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 704 NMEHENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIELGLLREEEKQRAAKDHETAVKKLK 773
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
260-945 |
4.17e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.19 E-value: 4.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 260 TKMMEAKFSEEKLKLQQKHDAEVQKILERKNNELEE-------LKIL--YKKKQTETEETIRKLEKKV----QILIRDCQ 326
Cdd:TIGR01612 873 TNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIEEeyqnintLKKVdeYIKICENTKESIEKFHNKQnilkEILNKNID 952
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 327 VIRETKE--------------NQITELKKICEQ----STESLNNDWEKKLHNAVAEMEKDK-------FELQKHHTETIQ 381
Cdd:TIGR01612 953 TIKESNLieksykdkfdntliDKINELDKAFKDaslnDYEAKNNELIKYFNDLKANLGKNKenmlyhqFDEKEKATNDIE 1032
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 382 ELLEDTNVRLSKMEADYVVQMQSTNHMIKELEGRVQQLMG----EAENSNLQRQKLTQEKLELERCYQIT-------CNE 450
Cdd:TIGR01612 1033 QKIEDANKNIPNIEIAIHTSIYNIIDEIEKEIGKNIELLNkeilEEAEINITNFNEIKEKLKHYNFDDFGkeenikyADE 1112
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 451 LQELKTRRNILHKEKEHLVNDYEQnvklLKTKYDSDINLLRQ-----EHALSTSKTSGVIEELEQnicqlKQQVQESELQ 525
Cdd:TIGR01612 1113 INKIKDDIKNLDQKIDHHIKALEE----IKKKSENYIDEIKAqindlEDVADKAISNDDPEEIEK-----KIENIVTKID 1183
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 526 RKQQVKDQENKF-----HMEKNH--------LKHTYEKKVHELQSE-LDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQ 591
Cdd:TIGR01612 1184 KKKNIYDEIKKLlneiaEIEKDKtsleevkgINLSYGKNLGKLFLEkIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIE 1263
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 592 RLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLtRSKSLREKQSKEFLWQLEDAKQRYEQQIVE--------- 662
Cdd:TIGR01612 1264 NEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDI-REKSLKIIEDFSEESDINDIKKELQKNLLDaqkhnsdin 1342
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 663 ------------LKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRaaNMEHENQIQESKKRDAQVIAD------ 724
Cdd:TIGR01612 1343 lylneianiyniLKLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIK--KIKDDINLEECKSKIESTLDDkdidec 1420
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 725 ----MEAQVHKLREEL----------------------ISVNSQRKQQLIELgllreeEKQRAAKDHETAVKKLKAESER 778
Cdd:TIGR01612 1421 ikkiKELKNHILSEESnidtyfknadennenvlllfknIEMADNKSQHILKI------KKDNATNDHDFNINELKEHIDK 1494
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 779 VKMelKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSS---------QIIAELQTTISSLKEESSRQQLAAERRLQDvI 849
Cdd:TIGR01612 1495 SKG--CKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSalaiknkfaKTKKDSEIIIKEIKDAHKKFILEAEKSEQK-I 1571
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 850 QKFEDEKQQL---IRDNDQAIKALQD------ELETRSHQVRSAEKKLHH--KELEAQEQIMYI----RQEYETKFKGLM 914
Cdd:TIGR01612 1572 KEIKKEKFRIeddAAKNDKSNKAAIDiqlsleNFENKFLKISDIKKKINDclKETESIEKKISSfsidSQDTELKENGDN 1651
|
810 820 830
....*....|....*....|....*....|.
gi 1735137067 915 PASLRQELEdtisSLKSQVNFLQKRASILQE 945
Cdd:TIGR01612 1652 LNSLQEFLE----SLKDQKKNIEDKKKELDE 1678
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
690-899 |
4.21e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 690 DREIENLEKQLRAAnmehENQIQESKKR------------DAQVIADMEAQVHKLREELISVNSQRKQQLIELGLLREEE 757
Cdd:COG3206 181 EEQLPELRKELEEA----EAALEEFRQKnglvdlseeaklLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDAL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 758 KQRAAkdhETAVKKLKAESERVKMELkkthaAETEMTLEKANSRLKQIEKEYtqklaksSQIIAELQTTISSLKEESSRQ 837
Cdd:COG3206 257 PELLQ---SPVIQQLRAQLAELEAEL-----AELSARYTPNHPDVIALRAQI-------AALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1735137067 838 QLAAERRLQDVIQKFEDEKQQLIRDNDQAIK--ALQDELETRSHQVRSAEKKLhhKELEAQEQI 899
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAElrRLEREVEVARELYESLLQRL--EEARLAEAL 383
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
516-843 |
4.60e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 516 KQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQA 595
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 596 QQADAALEEFKRQVEVN--SEKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTH 673
Cdd:pfam02463 251 EEIESSKQEIEKEEEKLaqVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 674 LLQQHSAEKDSLVRD--------HDREIENLEKQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQ 745
Cdd:pfam02463 331 KKEKEEIEELEKELKeleikreaEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 746 QLIELGLLREEEKQRAAKDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQT 825
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330
....*....|....*...
gi 1735137067 826 TISSLKEESSRQQLAAER 843
Cdd:pfam02463 491 SRQKLEERSQKESKARSG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
722-953 |
5.59e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 722 IADMEAQVHKLREELISVNSQRKQQLIELGLLRE--------EEKQRAAKDHETAVKKLkAESERVKMELKKTHA--AET 791
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQErrealqrlAEYSWDEIDVASAEREI-AELEAELERLDASSDdlAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 792 EMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDNdqAIKALQ 871
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA--VERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 872 DELEtrsHQVRSAEKKLHhkelEAQEQIMYIRQEYETKFKGlmpaslrqELEDTISSLKSQVNFLQKRASILQEELTTYQ 951
Cdd:COG4913 769 ENLE---ERIDALRARLN----RAEEELERAMRAFNREWPA--------ETADLDADLESLPEYLALLDRLEEDGLPEYE 833
|
..
gi 1735137067 952 SR 953
Cdd:COG4913 834 ER 835
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
693-824 |
5.61e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 693 IENLEKQLRAanmehenqiQESKKRDAQVIadmEAQVHKLREELisvnsqrKQQLIELGLLREEEKQRAAKDHETAVKKL 772
Cdd:PRK00409 522 IASLEELERE---------LEQKAEEAEAL---LKEAEKLKEEL-------EEKKEKLQEEEDKLLEEAEKEAQQAIKEA 582
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1735137067 773 KAESERVKMEL----KKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQ 824
Cdd:PRK00409 583 KKEADEIIKELrqlqKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
505-812 |
6.07e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 505 IEELEQNICQLKQQVQeselQRKQQVkDQENKFHMEKNHLK-HTYEKKVHELQSELDkEKEDAQRKIHKFEEALKEKEEQ 583
Cdd:COG3096 852 LAQHRAQEQQLRQQLD----QLKEQL-QLLNKLLPQANLLAdETLADRLEELREELD-AAQEAQAFIQQHGKALAQLEPL 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 584 LSRV----TEVQRLQA--QQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLREKQsKEFLWQLEDAKQRYE 657
Cdd:COG3096 926 VAVLqsdpEQFEQLQAdyLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNEKL-RARLEQAEEARREAR 1004
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 658 QQivelkleheqekthlLQQHSAEKDslvrDHDREIENLEKQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREEL- 736
Cdd:COG3096 1005 EQ---------------LRQAQAQYS----QYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEAEERARIRRDELh 1065
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1735137067 737 --ISVNSQRKQQLielgllreeEKQRAAkdhetavkklkaeservkmelkkthaaeTEMTLEKANSRLKQIEKEYTQK 812
Cdd:COG3096 1066 eeLSQNRSRRSQL---------EKQLTR----------------------------CEAEMDSLQKRLRKAERDYKQE 1106
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
561-839 |
7.23e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.27 E-value: 7.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 561 KEKEDAQRKIHKFEEALKEKEEQLSRVTEVQrLQAQQADAALEEFKRqvEVNSEKVYGEMKEQMEKVEADLTRSKSLREK 640
Cdd:PLN02939 163 TEKEALQGKINILEMRLSETDARIKLAAQEK-IHVEILEEQLEKLRN--ELLIRGATEGLCVHSLSKELDVLKEENMLLK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 641 QSKEFLWQLEDAKQRYEQQIVELklehEQEKTHLlqqhsaekDSLVRDhdreienLEKQLRAAnmehenQIQESKKRDAQ 720
Cdd:PLN02939 240 DDIQFLKAELIEVAETEERVFKL----EKERSLL--------DASLRE-------LESKFIVA------QEDVSKLSPLQ 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 721 VIADMEaQVHKLREELISVNSQRKQQLIELGL---LREEEKQRAAKDHETAVKKLKaeSERVKMELKKTHAAEtemtlek 797
Cdd:PLN02939 295 YDCWWE-KVENLQDLLDRATNQVEKAALVLDQnqdLRDKVDKLEASLKEANVSKFS--SYKVELLQQKLKLLE------- 364
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1735137067 798 anSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQL 839
Cdd:PLN02939 365 --ERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSL 404
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
500-861 |
7.36e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 39.84 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 500 KTSGVIEELEQNICQLKQQVQESeLQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQseldkekedAQRkiHKFEEALKE 579
Cdd:pfam06160 83 KAKKALDEIEELLDDIEEDIKQI-LEELDELLESEEKNREEVEELKDKYRELRKTLL---------ANR--FSYGPAIDE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 580 KEEQLsrvtevqrlqaqqaDAALEEFKRQVEVNSE-------KVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDA 652
Cdd:pfam06160 151 LEKQL--------------AEIEEEFSQFEELTESgdylearEVLEKLEEETDALEELMEDIPPLYEELKTELPDQLEEL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 653 KQRYEQ---------------QIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQlraanMEHE----NQIQE 713
Cdd:pfam06160 217 KEGYREmeeegyalehlnvdkEIQQLEEQLEENLALLENLELDEAEEALEEIEERIDQLYDL-----LEKEvdakKYVEK 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 714 SKKRDAQVIADMEAQVHKLREELisvnsqrkQQLIELGLLREEEKQRaAKDHETAVKKLKAESERVKMELKKTHAAETEM 793
Cdd:pfam06160 292 NLPEIEDYLEHAEEQNKELKEEL--------ERVQQSYTLNENELER-VRGLEKQLEELEKRYDEIVERLEEKEVAYSEL 362
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 794 T--LEKANSRLKQIEKEytqklakssqiIAELQTTISSLKEEssrqqlaaERRLQDVIQKFEDEKQQLIR 861
Cdd:pfam06160 363 QeeLEEILEQLEEIEEE-----------QEEFKESLQSLRKD--------ELEAREKLDEFKLELREIKR 413
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
401-529 |
7.52e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.42 E-value: 7.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 401 QMQS-TNHMIKELEGRVQQL------MGEAENSNLQ----RQKLTQEKLELErcyQITCNELQELKTRRNILHKEKEHLV 469
Cdd:PRK10929 144 QQQTeARRQLNEIERRLQTLgtpntpLAQAQLTALQaesaALKALVDELELA---QLSANNRQELARLRSELAKKRSQQL 220
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1735137067 470 NDYEQNVKllktkydSDINLLRQ---EHAL---------STSKTSGVIEELEQN--ICQ-LKQQVQESELQRKQQ 529
Cdd:PRK10929 221 DAYLQALR-------NQLNSQRQreaERALestellaeqSGDLPKSIVAQFKINreLSQaLNQQAQRMDLIASQQ 288
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
428-808 |
8.94e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.06 E-value: 8.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 428 LQRQKLTQEKLELERCYQITCNEL---QELKTRRNILHKEKEHLVNDYEQNVKLLKTKYDSdinllRQEHALSTSKTSGV 504
Cdd:COG5022 826 IKREKKLRETEEVEFSLKAEVLIQkfgRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQE-----LKIDVKSISSLKLV 900
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 505 IEELEQNICQLKQQVQESELQrkqqvkdqENKFHMEK-NHLKHTYEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQ 583
Cdd:COG5022 901 NLELESEIIELKKSLSSDLIE--------NLEFKTELiARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEE 972
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 584 LSRVTEVQRLQAQQADAALEEFKRQVevnseKVYGEMKEQMEKVEADLTRSKSLR----EKQSKEFLWQLEDAKQRYEQQ 659
Cdd:COG5022 973 YEDLLKKSTILVREGNKANSELKNFK-----KELAELSKQYGALQESTKQLKELPvevaELQSASKIISSESTELSILKP 1047
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 660 IVELKLEHEQEKTHL---LQQHSAEKDSLVRDHDRE-----IENLEKQLRAANMEHENQIQESKK------RDAQVIADM 725
Cdd:COG5022 1048 LQKLKGLLLLENNQLqarYKALKLRRENSLLDDKQLyqlesTENLLKTINVKDLEVTNRNLVKPAnvlqfiVAQMIKLNL 1127
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 726 EAQVHKLREELISVNSQRKQQLIELGLLREEEKQRAAKDHETAVKKLKAESERvkmelKKTHAAETEMTLEKANSRLKQI 805
Cdd:COG5022 1128 LQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEK-----RLYQSALYDEKSKLSSSEVNDL 1202
|
...
gi 1735137067 806 EKE 808
Cdd:COG5022 1203 KNE 1205
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
686-842 |
9.08e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 9.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 686 VRDHDREIENLEKQLRAANMEHEnQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQlielGLLREEEKQRAAKDh 765
Cdd:COG1579 33 LAELEDELAALEARLEAAKTELE-DLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYE----ALQKEIESLKRRIS- 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1735137067 766 etavkkLKAESERVKMELKKTHAAEtemtLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEEssRQQLAAE 842
Cdd:COG1579 107 ------DLEDEILELMERIEELEEE----LAELEAELAELEAELEEKKAELDEELAELEAELEELEAE--REELAAK 171
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
273-637 |
9.42e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 39.74 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 273 KLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRE-TKENQITELKKICEQSTESln 351
Cdd:pfam09731 66 PLQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEVAEEEKEATKDAAEAKAQLPKSEqEKEKALEEVLKEAISKAES-- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 352 ndweKKLhnAVAEMEKDKFELQKHHTETIQELLEDTNVRLSKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENSNLQRQ 431
Cdd:pfam09731 144 ----ATA--VAKEAKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQKAEALAEKLKEVINLAKQSEEEAAPPLLDAA 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 432 KLTQEKLELERCYQITcnELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKYDSDINLLRQEHALSTSKTSGVIEELEQN 511
Cdd:pfam09731 218 PETPPKLPEHLDNVEE--KVEKAQSLAKLVDQYKELVASERIVFQQELVSIFPDIIPVLKEDNLLSNDDLNSLIAHAHRE 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 512 ICQLKQQVQESELQRKQQVKDQENKFHMEK----NHLKHTYEKKVHELQSELDKEKEDAQRKIH-KFEEALKEKEEQLSR 586
Cdd:pfam09731 296 IDQLSKKLAELKKREEKHIERALEKQKEELdklaEELSARLEEVRAADEAQLRLEFEREREEIReSYEEKLRTELERQAE 375
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1735137067 587 VTEvQRLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSL 637
Cdd:pfam09731 376 AHE-EHLKDVLVEQEIELQREFLQDIKEKVEEERAGRLLKLNELLANLKGL 425
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
648-924 |
9.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 9.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 648 QLEDAKQRYEQQIVELKLEHEQEKT------HLLQQHSAEKDslVRDHDREIENLEKQLRAANmehenqiqeskkRDAQV 721
Cdd:COG4913 621 ELEEELAEAEERLEALEAELDALQErrealqRLAEYSWDEID--VASAEREIAELEAELERLD------------ASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 722 IADMEAQVHKLREELISVNSQRkqqlielgllreEEKQRAAKDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSR 801
Cdd:COG4913 687 LAALEEQLEELEAELEELEEEL------------DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER 754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137067 802 LKQIEKEytqklAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIK--ALQDELETRsh 879
Cdd:COG4913 755 FAAALGD-----AVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEylALLDRLEED-- 827
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1735137067 880 qvrsaekKLHHKELEAQEQimyiRQEYETKFKGLMPASLRQELED 924
Cdd:COG4913 828 -------GLPEYEERFKEL----LNENSIEFVADLLSKLRRAIRE 861
|
|
| |
