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Conserved domains on  [gi|1635577259|ref|NP_001357453|]
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transmembrane inner ear expressed protein isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TMIE super family cl24564
TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed ...
 1-69 1.07e-30

TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed protein. It's function is unknown.


The actual alignment was detected with superfamily member pfam16038:

Pssm-ID: 464987  Cd Length: 85  Bit Score: 103.96  E-value: 1.07e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1635577259   1 MRLWHVVGIFSLFVLSIIITLCCVFNCRVPRTRKEIEARYLQRKAAKMYTDKLETVPPlNELTEVPGED 69
Cdd:pfam16038   9 LRVWHLIFIVLGVVLAIVIILCCCFRFRIPRTKQEIEADYARKKLAKKFREKLETIPN-TEMDEMDLEK 76
 
Name Accession Description Interval E-value
TMIE pfam16038
TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed ...
 1-69 1.07e-30

TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed protein. It's function is unknown.


Pssm-ID: 464987  Cd Length: 85  Bit Score: 103.96  E-value: 1.07e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1635577259   1 MRLWHVVGIFSLFVLSIIITLCCVFNCRVPRTRKEIEARYLQRKAAKMYTDKLETVPPlNELTEVPGED 69
Cdd:pfam16038   9 LRVWHLIFIVLGVVLAIVIILCCCFRFRIPRTKQEIEADYARKKLAKKFREKLETIPN-TEMDEMDLEK 76
 
Name Accession Description Interval E-value
TMIE pfam16038
TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed ...
 1-69 1.07e-30

TMIE protein; This family of proteins includes the mammalian transmembrane inner ear expressed protein. It's function is unknown.


Pssm-ID: 464987  Cd Length: 85  Bit Score: 103.96  E-value: 1.07e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1635577259   1 MRLWHVVGIFSLFVLSIIITLCCVFNCRVPRTRKEIEARYLQRKAAKMYTDKLETVPPlNELTEVPGED 69
Cdd:pfam16038   9 LRVWHLIFIVLGVVLAIVIILCCCFRFRIPRTKQEIEADYARKKLAKKFREKLETIPN-TEMDEMDLEK 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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