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Conserved domains on  [gi|1371977096|ref|NP_001348487|]
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epsin-3 isoform 2 [Mus musculus]

Protein Classification

ENTH_Epsin and UIM domain-containing protein( domain architecture ID 13016865)

protein containing domains ENTH_Epsin, UIM, and PHA03247

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ENTH_Epsin cd16990
Epsin N-Terminal Homology (ENTH) domain of Epsin family; Members of the epsin family play an ...
 19-142 1.02e-95

Epsin N-Terminal Homology (ENTH) domain of Epsin family; Members of the epsin family play an important role as accessory proteins in clathrin-mediated endocytosis. They are important factors in clathrin-coated vesicle (CCV) generation. They contribute to membrane deformation and play a key function as adaptor proteins, coupling various components of clathrin-mediated uptake. They also have an important role in selecting and recognizing cargo. Three isoforms have been identified in mammals, epsin-1 to -3, and these are conserved in vertebrates. Epsin-1 is highly enriched and represents the dominant isoform in the brain. It is required for proper synaptic vesicle retrieval and modulates the endocytic capacity of synaptic vesicles. Epsins contain an Epsin N-Terminal Homology (ENTH) domain, an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. The ENTH domain is highly similar to the N-terminal region of the AP180 N-Terminal Homology (ANTH_N) domain. ENTH and ANTH_N domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. ENTH domains bind both, inositol phospholipids with preference for PtdIns(4,5)P2, and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of CCVs. ENTH and ANTH (E/ANTH)-containing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the Trans-Golgi Network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding.


:

Pssm-ID: 340787  Cd Length: 124  Bit Score: 288.48  E-value: 1.02e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  19 EAEIKVREATSNDPWGPPSSLMSEIADLTFNTVAFAEVMGMVWRRLNDSGKNWRHVYKALTLLDYLLKTGSERVAHQCRE 98
Cdd:cd16990     1 EAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKALTLLEYLIKTGSERVAQQCKE 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1371977096  99 NLYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEERLRQ 142
Cdd:cd16990    81 NIFAIQTLKDFQYIDRDGKDQGVNVREKAKQLVSLLKDDERLKN 124
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 275-607 4.87e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.57  E-value: 4.87e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  275 APAPALPSTHCSADPWDIPGLRPNTEPSGSSWG---PSADPWSPVPSGNALSRSQPWDLLPTLSSSEPWGRTPvlPSGPP 351
Cdd:PHA03247  2613 PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTvppPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR--RAARP 2690

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  352 -------IADPWAPSSPTRKLPSTGADPWGASMETSDTSALGGASPFDPFAKPLES---TEPKESRDSAQALPTGKSPST 421
Cdd:PHA03247  2691 tvgsltsLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAgpaTPGGPARPARPPTTAGPPAPA 2770

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  422 VELDPFGDSSPSckqngMKEPEALDLGVLGEALP--QQPGKEARPCRTPESFLGPSASSlvnlDSLVKAPLAARTRNPFL 499
Cdd:PHA03247  2771 PPAAPAAGPPRR-----LTRPAVASLSESRESLPspWDPADPPAAVLAPAAALPPAASP----AGPLPPPTSAQPTAPPP 2841

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  500 TGLGVPSPTNPFGAGDQGRPTLNQMRTGSPALglPPGGPVGAPVGSMTYSA------SLPLPLSSVPVGATLPASVSVFP 573
Cdd:PHA03247  2842 PPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA--KPAAPARPPVRRLARPAvsrsteSFALPPDQPERPPQPQAPPPPQP 2919

                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1371977096  574 QAgafAPPPASLPQPLLPTSG-PMGPLPPQAGTNP 607
Cdd:PHA03247  2920 QP---QPPPPPQPQPPPPPPPrPQPPLAPTTDPAG 2951
UIM smart00726
Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated ...
 202-221 8.60e-04

Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated proteins.


:

Pssm-ID: 197845  Cd Length: 20  Bit Score: 36.74  E-value: 8.60e-04
                           10        20
                   ....*....|....*....|
gi 1371977096  202 EEELQLQLALAMSREEAERG 221
Cdd:smart00726   1 DEDEDLQRALELSLQEAEES 20
 
Name Accession Description Interval E-value
ENTH_Epsin cd16990
Epsin N-Terminal Homology (ENTH) domain of Epsin family; Members of the epsin family play an ...
 19-142 1.02e-95

Epsin N-Terminal Homology (ENTH) domain of Epsin family; Members of the epsin family play an important role as accessory proteins in clathrin-mediated endocytosis. They are important factors in clathrin-coated vesicle (CCV) generation. They contribute to membrane deformation and play a key function as adaptor proteins, coupling various components of clathrin-mediated uptake. They also have an important role in selecting and recognizing cargo. Three isoforms have been identified in mammals, epsin-1 to -3, and these are conserved in vertebrates. Epsin-1 is highly enriched and represents the dominant isoform in the brain. It is required for proper synaptic vesicle retrieval and modulates the endocytic capacity of synaptic vesicles. Epsins contain an Epsin N-Terminal Homology (ENTH) domain, an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. The ENTH domain is highly similar to the N-terminal region of the AP180 N-Terminal Homology (ANTH_N) domain. ENTH and ANTH_N domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. ENTH domains bind both, inositol phospholipids with preference for PtdIns(4,5)P2, and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of CCVs. ENTH and ANTH (E/ANTH)-containing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the Trans-Golgi Network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding.


Pssm-ID: 340787  Cd Length: 124  Bit Score: 288.48  E-value: 1.02e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  19 EAEIKVREATSNDPWGPPSSLMSEIADLTFNTVAFAEVMGMVWRRLNDSGKNWRHVYKALTLLDYLLKTGSERVAHQCRE 98
Cdd:cd16990     1 EAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKALTLLEYLIKTGSERVAQQCKE 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1371977096  99 NLYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEERLRQ 142
Cdd:cd16990    81 NIFAIQTLKDFQYIDRDGKDQGVNVREKAKQLVSLLKDDERLKN 124
ENTH pfam01417
ENTH domain; The ENTH (Epsin N-terminal homology) domain is found in proteins involved in ...
 17-140 1.23e-69

ENTH domain; The ENTH (Epsin N-terminal homology) domain is found in proteins involved in endocytosis and cytoskeletal machinery. The function of the ENTH domain is unknown.


Pssm-ID: 426255  Cd Length: 124  Bit Score: 220.89  E-value: 1.23e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  17 YSEAEIKVREATSNDPWGPPSSLMSEIADLTFNTVAFAEVMGMVWRRLNDSGKNWRHVYKALTLLDYLLKTGSERVAHQC 96
Cdd:pfam01417   1 YSETELKVREATNNDPWGPSGTLMDEIARLTYNYVEFPEIMKMLWKRLNDKGKNWRHIYKALTLLEYLLKNGSERVVDDL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1371977096  97 RENLYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEERL 140
Cdd:pfam01417  81 RENIYIIRTLTDFHYIDENGKDQGINVRKKAKEILNLLEDDELL 124
ENTH smart00273
Epsin N-terminal homology (ENTH) domain;
18-144 7.36e-51

Epsin N-terminal homology (ENTH) domain;


Pssm-ID: 214594  Cd Length: 127  Bit Score: 171.66  E-value: 7.36e-51
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096   18 SEAEIKVREATSNDPWGPPSSLMSEIADLTFNT-VAFAEVMGMVWRRLNDSGkNWRHVYKALTLLDYLLKTGSERVAHQC 96
Cdd:smart00273   1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEkSSFAEIMAVLWRRLNDTK-NWRVVYKALILLHYLLRNGSPRVILEA 79

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1371977096   97 RENLYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEERLRQER 144
Cdd:smart00273  80 LRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLEDDRRLKEER 127
PHA03247 PHA03247
large tegument protein UL36; Provisional
 275-607 4.87e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.57  E-value: 4.87e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  275 APAPALPSTHCSADPWDIPGLRPNTEPSGSSWG---PSADPWSPVPSGNALSRSQPWDLLPTLSSSEPWGRTPvlPSGPP 351
Cdd:PHA03247  2613 PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTvppPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR--RAARP 2690

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  352 -------IADPWAPSSPTRKLPSTGADPWGASMETSDTSALGGASPFDPFAKPLES---TEPKESRDSAQALPTGKSPST 421
Cdd:PHA03247  2691 tvgsltsLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAgpaTPGGPARPARPPTTAGPPAPA 2770

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  422 VELDPFGDSSPSckqngMKEPEALDLGVLGEALP--QQPGKEARPCRTPESFLGPSASSlvnlDSLVKAPLAARTRNPFL 499
Cdd:PHA03247  2771 PPAAPAAGPPRR-----LTRPAVASLSESRESLPspWDPADPPAAVLAPAAALPPAASP----AGPLPPPTSAQPTAPPP 2841

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  500 TGLGVPSPTNPFGAGDQGRPTLNQMRTGSPALglPPGGPVGAPVGSMTYSA------SLPLPLSSVPVGATLPASVSVFP 573
Cdd:PHA03247  2842 PPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA--KPAAPARPPVRRLARPAvsrsteSFALPPDQPERPPQPQAPPPPQP 2919

                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1371977096  574 QAgafAPPPASLPQPLLPTSG-PMGPLPPQAGTNP 607
Cdd:PHA03247  2920 QP---QPPPPPQPQPPPPPPPrPQPPLAPTTDPAG 2951
UIM smart00726
Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated ...
 202-221 8.60e-04

Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated proteins.


Pssm-ID: 197845  Cd Length: 20  Bit Score: 36.74  E-value: 8.60e-04
                           10        20
                   ....*....|....*....|
gi 1371977096  202 EEELQLQLALAMSREEAERG 221
Cdd:smart00726   1 DEDEDLQRALELSLQEAEES 20
 
Name Accession Description Interval E-value
ENTH_Epsin cd16990
Epsin N-Terminal Homology (ENTH) domain of Epsin family; Members of the epsin family play an ...
 19-142 1.02e-95

Epsin N-Terminal Homology (ENTH) domain of Epsin family; Members of the epsin family play an important role as accessory proteins in clathrin-mediated endocytosis. They are important factors in clathrin-coated vesicle (CCV) generation. They contribute to membrane deformation and play a key function as adaptor proteins, coupling various components of clathrin-mediated uptake. They also have an important role in selecting and recognizing cargo. Three isoforms have been identified in mammals, epsin-1 to -3, and these are conserved in vertebrates. Epsin-1 is highly enriched and represents the dominant isoform in the brain. It is required for proper synaptic vesicle retrieval and modulates the endocytic capacity of synaptic vesicles. Epsins contain an Epsin N-Terminal Homology (ENTH) domain, an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. The ENTH domain is highly similar to the N-terminal region of the AP180 N-Terminal Homology (ANTH_N) domain. ENTH and ANTH_N domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. ENTH domains bind both, inositol phospholipids with preference for PtdIns(4,5)P2, and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of CCVs. ENTH and ANTH (E/ANTH)-containing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the Trans-Golgi Network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding.


Pssm-ID: 340787  Cd Length: 124  Bit Score: 288.48  E-value: 1.02e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  19 EAEIKVREATSNDPWGPPSSLMSEIADLTFNTVAFAEVMGMVWRRLNDSGKNWRHVYKALTLLDYLLKTGSERVAHQCRE 98
Cdd:cd16990     1 EAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKALTLLEYLIKTGSERVAQQCKE 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1371977096  99 NLYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEERLRQ 142
Cdd:cd16990    81 NIFAIQTLKDFQYIDRDGKDQGVNVREKAKQLVSLLKDDERLKN 124
ENTH_Ent1_Ent2 cd16991
Epsin N-Terminal Homology (ENTH) domain of Yeast Ent1, Ent2, and similar proteins; This ...
 17-145 5.06e-70

Epsin N-Terminal Homology (ENTH) domain of Yeast Ent1, Ent2, and similar proteins; This subfamily is composed of the two orthologs of epsin in Saccharomyces cerevisiae, Epsin-1 (Ent1 or Ent1p) and Epsin-2 (Ent2 or Ent2p), and similar proteins. Yeast single epsin knockouts, either Ent1 and Ent2, are viable while the double knockout is not. Yeast epsins are required for endocytosis and localization of actin. Ent2 also plays a signaling role during cell division. The ENTH domain of Ent2 interacts with the septin organizing, Cdc42 GTPase activating protein, Bem3, leading to increased cytokinesis failure when overexpressed. Yeast epsins contain an Epsin N-Terminal Homology (ENTH) domain, an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. ENTH domain is highly similar to the N-terminal region of the AP180 N-Terminal Homology (ANTH_N) domain. ENTH and ANTH_N domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. ENTH domains bind both, inositol phospholipids with preference for PtdIns(4,5)P2, and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. ENTH and ANTH (E/ANTH)-containing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the Trans-Golgi Network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding.


Pssm-ID: 340788  Cd Length: 132  Bit Score: 222.15  E-value: 5.06e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  17 YSEAEIKVREATSNDPWGPPSSLMSEIADLTFNTVAFAEVMGMVWRRLNDSGKNWRHVYKALTLLDYLLKTGSERVAHQC 96
Cdd:cd16991     2 YSSTQVKVRNATSNDPWGPSGDEMAEIAELTYDQHDFVEIMDMLDKRLNDKGKNWRHVAKALTVLDYLLHFGSENVVLWA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1371977096  97 RENLYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEERLRQERT 145
Cdd:cd16991    82 KENIYIIKTLREFQYIDDEGKDQGQNVRVKAKELTSLLLDDERLREERS 130
ENTH pfam01417
ENTH domain; The ENTH (Epsin N-terminal homology) domain is found in proteins involved in ...
 17-140 1.23e-69

ENTH domain; The ENTH (Epsin N-terminal homology) domain is found in proteins involved in endocytosis and cytoskeletal machinery. The function of the ENTH domain is unknown.


Pssm-ID: 426255  Cd Length: 124  Bit Score: 220.89  E-value: 1.23e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  17 YSEAEIKVREATSNDPWGPPSSLMSEIADLTFNTVAFAEVMGMVWRRLNDSGKNWRHVYKALTLLDYLLKTGSERVAHQC 96
Cdd:pfam01417   1 YSETELKVREATNNDPWGPSGTLMDEIARLTYNYVEFPEIMKMLWKRLNDKGKNWRHIYKALTLLEYLLKNGSERVVDDL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1371977096  97 RENLYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEERL 140
Cdd:pfam01417  81 RENIYIIRTLTDFHYIDENGKDQGINVRKKAKEILNLLEDDELL 124
ENTH_EpsinR cd16989
Epsin N-Terminal Homology (ENTH) domain of Epsin-related protein; Epsin-related protein ...
 20-147 1.16e-63

Epsin N-Terminal Homology (ENTH) domain of Epsin-related protein; Epsin-related protein (EpsinR) is also called clathrin interactor 1 (Clint), enthoprotin, or epsin-4. It is a clathrin-coated vesicle (CCV) protein that binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2), clathrin, and the gamma appendage domain of the adaptor protein complex 1 (AP1). It contains an Epsin N-Terminal Homology (ENTH) domain, an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. The ENTH domain is highly similar to the N-terminal region of the AP180 N-Terminal Homology (ANTH_N) domain. ENTH and ANTH_N domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. ENTH domains bind both, inositol phospholipids with preference for PtdIns(4,5)P2, and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. The ENTH domain of human epsinR binds directly to the helical bundle domain of the mouse SNARE Vti1b; soluble NSF attachment protein receptors (SNAREs) are type II transmembrane proteins that have critical roles in providing the specificity and energy for transport-vesicle fusion. Specific ENTH domains may also function as protein cargo selection/recognition modules. ENTH and ANTH (E/ANTH)-containing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the Trans-Golgi Network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding.


Pssm-ID: 340786  Cd Length: 130  Bit Score: 205.60  E-value: 1.16e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  20 AEIKVREATSNDPWGPPSSLMSEIADLTFNTVAFAEVMGMVWRR-LNDSGKNWRHVYKALTLLDYLLKTGSERVAHQCRE 98
Cdd:cd16989     1 IESKVREATNDDPWGPTGQLMQEIARYTFTYEQFPEVMNMLWKRmLKDNKKNWRRVYKSLLLLDYLLKNGSERVVTSARE 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1371977096  99 NLYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEERLRQERTHA 147
Cdd:cd16989    81 HIYDLRSLENYHFIDEKGKDQGINVRQKVKEIIELLQDDERLREERKKA 129
ENTH cd03571
Epsin N-Terminal Homology (ENTH) domain family; The Epsin N-Terminal Homology (ENTH) domain is ...
 20-136 1.23e-62

Epsin N-Terminal Homology (ENTH) domain family; The Epsin N-Terminal Homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. ENTH domain is highly similar to the N-terminal region of the AP180 N-Terminal Homology (ANTH_N) domain. ENTH and ANTH_N domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. ENTH domains bind both, inositol phospholipids with preference for PtdIns(4,5)P2, and proteins, contributing to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. ENTH and ANTH (E/ANTH)-containing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the Trans-Golgi Network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding.


Pssm-ID: 340772  Cd Length: 117  Bit Score: 202.36  E-value: 1.23e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  20 AEIKVREATSNDPWGPPSSLMSEIADLTFNTVAFAEVMGMVWRRLNDSGKNWRHVYKALTLLDYLLKTGSERVAHQCREN 99
Cdd:cd03571     1 LELLVREATSNEPWGPTGSQLAEIAQATFDYDDYQRIMKVLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDEFRDN 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1371977096 100 LYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKD 136
Cdd:cd03571    81 LYLIRTLQDFQYVDENGDDQGINVREKAKQIVALLED 117
ENTH smart00273
Epsin N-terminal homology (ENTH) domain;
18-144 7.36e-51

Epsin N-terminal homology (ENTH) domain;


Pssm-ID: 214594  Cd Length: 127  Bit Score: 171.66  E-value: 7.36e-51
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096   18 SEAEIKVREATSNDPWGPPSSLMSEIADLTFNT-VAFAEVMGMVWRRLNDSGkNWRHVYKALTLLDYLLKTGSERVAHQC 96
Cdd:smart00273   1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEkSSFAEIMAVLWRRLNDTK-NWRVVYKALILLHYLLRNGSPRVILEA 79

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1371977096   97 RENLYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEERLRQER 144
Cdd:smart00273  80 LRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLEDDRRLKEER 127
ENTH_Ent3 cd16992
Epsin N-Terminal Homology (ENTH) domain of Yeast Ent3 and similar proteins; This subfamily is ...
 21-139 4.35e-45

Epsin N-Terminal Homology (ENTH) domain of Yeast Ent3 and similar proteins; This subfamily is composed of one of two epsinR orthologs present in Saccharomyces cerevisiae, Epsin-3 (Ent3 or Ent3p), and similar proteins. Ent3 is an adaptor proteins at the Trans-Golgi Network (TGN); it cooperates with yeast SNARE Vti1p to regulate transport from the TGN to the prevacuolar endosome. Ent3 facilitates the interaction between Gga2p with both the endosomal syntaxin Pep12p and clathrin in the GGA-dependent transport to the late endosome. Yeast epsins contain an Epsin N-Terminal Homology (ENTH) domain, an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. ENTH domain is highly similar to the N-terminal region of the AP180 N-Terminal Homology (ANTH_N) domain. ENTH and ANTH_N domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. ENTH domains bind both, inositol phospholipids with preference for PtdIns(4,5)P2, and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. Similar to mammalian epsinR, The ENTH domain of Ent3 binds to the yeast SNARE Vti1p; soluble NSF attachment protein receptors (SNAREs) are type II transmembrane proteins that have critical roles in providing the specificity and energy for transport-vesicle fusion. Specific ENTH domains may also function as protein cargo selection/recognition modules. ENTH and ANTH (E/ANTH)-containing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the Trans-Golgi Network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding.


Pssm-ID: 340789  Cd Length: 121  Bit Score: 155.69  E-value: 4.35e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  21 EIKVREATSNDPWGPPSSLMSEIADLTFNTVAFAEVMGMVWRRLND-SGKNWRHVYKALTLLDYLLKTGSERVAHQCREN 99
Cdd:cd16992     2 ESKVREATNNDPWGASSTLMQEIAQGTYNYQQFNEIMPMIYKRFTEkAGSEWRQIYKALQLLEYLIKNGSERVVDDARGH 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1371977096 100 LYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEER 139
Cdd:cd16992    82 LTLIKMLRSFHYIDDKGKDQGINVRNRAKELIELLSDDEK 121
VHS_ENTH_ANTH cd00197
VHS, ENTH and ANTH domain superfamily; This superfamily is composed of proteins containing a ...
 20-136 3.43e-31

VHS, ENTH and ANTH domain superfamily; This superfamily is composed of proteins containing a VHS, CID, ENTH, or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The CTD-Interacting Domain (CID) is present in several RNA-processing factors and binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase II (RNAP II or Pol II). The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-Terminal Homology (ANTH) domain. VHS, ENTH, and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH and ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH domain-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the Trans-Golgi Network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding.


Pssm-ID: 340764  Cd Length: 115  Bit Score: 117.53  E-value: 3.43e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  20 AEIKVREATSNDPWGPPSSLMSEIADLTFNT-VAFAEVMGMVWRRLNDsgKNWRHVYKALTLLDYLLKTGSERVAHQCRE 98
Cdd:cd00197     1 FEKTVEKATSNENMGPDWPLIMEICDLINETnVGPKEAVDAIKKRINN--KNPHVVLKALTLLEYCVKNCGERFHQEVAS 78

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1371977096  99 NLYTIQTLKdFQYIDRDGKDQGVNVREKVKQVMALLKD 136
Cdd:cd00197    79 NDFAVELLK-FDKSGLLGDDVSTNVREKAIELVQLWAS 115
ENTH_Ent4 cd16994
Epsin N-Terminal Homology (ENTH) domain of Yeast Ent4 and similar proteins; Yeast Epsin-4 ...
 20-138 7.39e-18

Epsin N-Terminal Homology (ENTH) domain of Yeast Ent4 and similar proteins; Yeast Epsin-4 (Ent4 or Ent4p) has been reported to be involved in the Trans-Golgi Network (TGN)-to-vacuole sorting of Arn1p, a transporter for the uptake of ferrichrome, an important nutritional source of iron. Yeast epsins contain an Epsin N-Terminal Homology (ENTH) domain, an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. ENTH domain is highly similar to the N-terminal region of the AP180 N-Terminal Homology (ANTH_N) domain. ENTH and ANTH_N domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. ENTH domains bind both, inositol phospholipids with preference for PtdIns(4,5)P2, and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. ENTH and ANTH (E/ANTH)-containing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the Trans-Golgi Network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding.


Pssm-ID: 340791  Cd Length: 126  Bit Score: 80.03  E-value: 7.39e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  20 AEIKVREAT-SNDPWGPPSSLMSEIADLTFNTVAFAEVMGMVWRRLN-----DSGKNWRHVYKALTLLDYLLKTGSERVA 93
Cdd:cd16994     1 TELKVKQATdDNETSGATGTLMNEISVLTYSPKTLKEITQVLKKRLSgnskkSSHKNCVHILKTLTLISYLINNGSNEFI 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1371977096  94 HQCRENLYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEE 138
Cdd:cd16994    81 AWLRSNLYLIERLKDFEVQDNRDLPMANQIRSLSQDICELINDDE 125
PHA03247 PHA03247
large tegument protein UL36; Provisional
 275-607 4.87e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.57  E-value: 4.87e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  275 APAPALPSTHCSADPWDIPGLRPNTEPSGSSWG---PSADPWSPVPSGNALSRSQPWDLLPTLSSSEPWGRTPvlPSGPP 351
Cdd:PHA03247  2613 PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTvppPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR--RAARP 2690

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  352 -------IADPWAPSSPTRKLPSTGADPWGASMETSDTSALGGASPFDPFAKPLES---TEPKESRDSAQALPTGKSPST 421
Cdd:PHA03247  2691 tvgsltsLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAgpaTPGGPARPARPPTTAGPPAPA 2770

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  422 VELDPFGDSSPSckqngMKEPEALDLGVLGEALP--QQPGKEARPCRTPESFLGPSASSlvnlDSLVKAPLAARTRNPFL 499
Cdd:PHA03247  2771 PPAAPAAGPPRR-----LTRPAVASLSESRESLPspWDPADPPAAVLAPAAALPPAASP----AGPLPPPTSAQPTAPPP 2841

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  500 TGLGVPSPTNPFGAGDQGRPTLNQMRTGSPALglPPGGPVGAPVGSMTYSA------SLPLPLSSVPVGATLPASVSVFP 573
Cdd:PHA03247  2842 PPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA--KPAAPARPPVRRLARPAvsrsteSFALPPDQPERPPQPQAPPPPQP 2919

                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1371977096  574 QAgafAPPPASLPQPLLPTSG-PMGPLPPQAGTNP 607
Cdd:PHA03247  2920 QP---QPPPPPQPQPPPPPPPrPQPPLAPTTDPAG 2951
PHA03247 PHA03247
large tegument protein UL36; Provisional
 293-607 5.82e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.10  E-value: 5.82e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  293 PGLRPNTEPSGSSWGPSADPWSPVPSGNAL-SRSQPWDLLPTLSSsepwGRTPVLPSGPPIADPWAPSSP--TRKLPSTG 369
Cdd:PHA03247  2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVtSRARRPDAPPQSAR----PRAPVDDRGDPRGPAPPSPLPpdTHAPDPPP 2628

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  370 ADPWGASMETSDTSALGGASPFDPFAKPLESTEPKESRDSAQALPTGKSpstveldpfgdSSPSCKQNGMKEPEALDLGV 449
Cdd:PHA03247  2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQAS-----------SPPQRPRRRAARPTVGSLTS 2697

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  450 LGEALPQQPGKEARPcrtpesflgpsaSSLVNLDSLVKAPLAARTRNPFLTGLGVP--SPTNPFGAGDQGRPTLNQMRTG 527
Cdd:PHA03247  2698 LADPPPPPPTPEPAP------------HALVSATPLPPGPAAARQASPALPAAPAPpaVPAGPATPGGPARPARPPTTAG 2765

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  528 SPAlGLPPGGPVGAPVGSMTYSA---------SLPLPLSSVPVGATLPASVSVFPQ----AGAFAPPPASLPQPLLPTSG 594
Cdd:PHA03247  2766 PPA-PAPPAAPAAGPPRRLTRPAvaslsesreSLPSPWDPADPPAAVLAPAAALPPaaspAGPLPPPTSAQPTAPPPPPG 2844

                          330
                   ....*....|....
gi 1371977096  595 PMGP-LPPQAGTNP 607
Cdd:PHA03247  2845 PPPPsLPLGGSVAP 2858
PHA03247 PHA03247
large tegument protein UL36; Provisional
 274-589 2.86e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 54.17  E-value: 2.86e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  274 FAPAPALPSTHCSADPWDIPGLRPNTEPSGSSWGPSADPWSPVPSGNALSrsqpwdllPTLSSSEPWGRTPVLPSGPPia 353
Cdd:PHA03247  2698 LADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG--------PATPGGPARPARPPTTAGPP-- 2767

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  354 DPWAPSSPTRKLPSTGADPWGASMETSDTSAlggASPFDPFAKPLESTEPKESRDSAQAlPTGKSPSTVELDPFGDSSPS 433
Cdd:PHA03247  2768 APAPPAAPAAGPPRRLTRPAVASLSESRESL---PSPWDPADPPAAVLAPAAALPPAAS-PAGPLPPPTSAQPTAPPPPP 2843

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  434 ckqngmkEPEALDLGVLGEALPQQPGKEARPCRTPESflGPSASSLVNLDSLVKAPLAARTRNPFLTGLGVPSPTNPfGA 513
Cdd:PHA03247  2844 -------GPPPPSLPLGGSVAPGGDVRRRPPSRSPAA--KPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP-QA 2913

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  514 GDQGRPTLNQMRTGSPALGLPPGGPVGAPVGSMTYSASLPLPLSSVP---VGATLPASVSV----FPQAGAFAPPPASLP 586
Cdd:PHA03247  2914 PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPqpwLGALVPGRVAVprfrVPQPAPSREAPASST 2993


                   ...
gi 1371977096  587 QPL 589
Cdd:PHA03247  2994 PPL 2996
PHA03247 PHA03247
large tegument protein UL36; Provisional
 231-593 6.82e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 6.82e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  231 PVANGAEPAGQRRQRDREPEREERKEEEKLKTSQSSILDLADIFAPAPALPSTHCSADPWDIPGLRPNTEPSGSSWGPSA 310
Cdd:PHA03247  2694 SLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPA 2773

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  311 DPWS------PVPSGNALSRSQPWDLLPTLSSSEPWGRTPVLPSGPPIADPWA----PSSPTRKLPSTGADPWGASMETS 380
Cdd:PHA03247  2774 APAAgpprrlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGplppPTSAQPTAPPPPPGPPPPSLPLG 2853

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  381 DTSALGG-----ASPFDPFAKPLESTEPKESRDSAQALPtgkspstveldpfgdsspsckqngmKEPEALDLGVLGEALP 455
Cdd:PHA03247  2854 GSVAPGGdvrrrPPSRSPAAKPAAPARPPVRRLARPAVS-------------------------RSTESFALPPDQPERP 2908

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  456 QQPGKEARPCRTPESFLGPSASSLVNLDSLVKAPLAARTRNPFLTGLGVPSPTNPFGAGDQGRPTLNQMRTGSPAlglpP 535
Cdd:PHA03247  2909 PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPA----P 2984

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1371977096  536 GGPVGAPvgsmtysASLPLPLSSVPVGATLPASVSVFPQAgafAPPPASLPQPLLPTS 593
Cdd:PHA03247  2985 SREAPAS-------STPPLTGHSLSRVSSWASSLALHEET---DPPPVSLKQTLWPPD 3032
ENTH_Ent5 cd16993
Epsin N-Terminal Homology (ENTH) domain of Yeast Ent5 and similar proteins; This subfamily is ...
 21-144 1.98e-05

Epsin N-Terminal Homology (ENTH) domain of Yeast Ent5 and similar proteins; This subfamily is composed of one of two epsinR orthologs present in Saccharomyces cerevisiae, Epsin-5 (Ent5 or Ent5p), and similar proteins. Ent5 is required, together with Ent3 and Vps27p for ubiquitin-dependent protein sorting into the multivesicular body. It is also required for protein transport from the Trans-Golgi Network (TGN) to the vacuole. Yeast epsins contain an Epsin N-Terminal Homology (ENTH) domain, an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. ENTH domain is highly similar to the N-terminal region of the AP180 N-Terminal Homology (ANTH_N) domain. ENTH and ANTH_N domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. ENTH domains bind both, inositol phospholipids with preference for PtdIns(4,5)P2, and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. ENTH and ANTH (E/ANTH)-containing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the Trans-Golgi Network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding.


Pssm-ID: 340790  Cd Length: 158  Bit Score: 45.15  E-value: 1.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  21 EIKVREATSNDPWGPPSSLMSEIAdLTFNTVAFAEVMGMVWRRLNDS-------------------GKNWRHVYKALTLL 81
Cdd:cd16993     2 QIDIRRATNTDAWGPTPKHLAKVL-RNRYQVPLYLMTEYTLKRLVDHiatrpknlyekarkdyvnyGSEWRVVLKCLIVI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1371977096  82 DYLL---KTGSErvAHQ---CRENLYTIQTLKDFQY---IDRDGKDQ--GVNVREKVKQVMALLKDEERLRQER 144
Cdd:cd16993    81 EFLLlnvDTGDE--LNQvlsCLLNHKHIFTREIAQYkvkFSNDGKMEihERGIQKKCELILQLIEDSDFLRQER 152
VHS cd03561
VHS (Vps27/Hrs/STAM) domain family; The VHS domain is present in Vps27 (Vacuolar Protein ...
 24-127 4.18e-05

VHS (Vps27/Hrs/STAM) domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family, which has the domain composition of VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition of VHS-GAT (GGA and TOM)-GAE (Gamma-Adaptin Ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general membrane targeting/cargo recognition role in vesicular trafficking.


Pssm-ID: 340765  Cd Length: 131  Bit Score: 43.41  E-value: 4.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  24 VREATSNDPWGPPSSLMSEIADLTFNTVAFA-EVMGMVWRRLNDsgKNWRHVYKALTLLDYLLKTGSERVAHQcrenlyt 102
Cdd:cd03561     5 VEKATSESLTEPDWALNLEICDLVNSDPAQAkDAVRALRKRLQS--KNPKVQLLALTLLETLVKNCGAPFHSE------- 75

                          90       100
                  ....*....|....*....|....*..
gi 1371977096 103 IQTLKDFQYIDR--DGKDQGVNVREKV 127
Cdd:cd03561    76 VASRDFLQELVKlvKKKKTSPEVREKA 102
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 280-605 4.29e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 4.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  280 LPSTHCSADPWDIPGLRPnTEPSGSSWGPSADPWSPVPSGNALSRSqPWDLLPTLSSSEPWGRTPVLPSGPPIADPWAPS 359
Cdd:PHA03307    44 VSDSAELAAVTVVAGAAA-CDRFEPPTGPPPGPGTEAPANESRSTP-TWSLSTLAPASPAREGSPTPPGPSSPDPPPPTP 121

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  360 SPTRKLPSTGADPWGA-SMETSDTSALGGASPFDPFAKPLESTEPKESRDSAQALPTGKSPSTVeLDPFGDSSPSCKQNG 438
Cdd:PHA03307   122 PPASPPPSPAPDLSEMlRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARA-PSSPPAEPPPSTPPA 200

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  439 MKEPEALDLGVlgEALPQQPGKEARPCRTPESFLGPSASSLVNLDSLVKA---------PLAARTRNPFLTGLGVPSPTN 509
Cdd:PHA03307   201 AASPRPPRRSS--PISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGwgpenecplPRPAPITLPTRIWEASGWNGP 278

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096  510 PFGAGDQGRPTLNQMRTGSPALGLPPGGPVGAPVGSMTYSASLPlplsSVPVGATLPASVSVFPQAGAFAPPPASLPQPL 589
Cdd:PHA03307   279 SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSR----ESSSSSTSSSSESSRGAAVSPGPSPSRSPSPS 354

                          330
                   ....*....|....*.
gi 1371977096  590 LPTSGPMGPLPPQAGT 605
Cdd:PHA03307   355 RPPPPADPSSPRKRPR 370
UIM smart00726
Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated ...
 202-221 8.60e-04

Ubiquitin-interacting motif; Present in proteasome subunit S5a and other ubiquitin-associated proteins.


Pssm-ID: 197845  Cd Length: 20  Bit Score: 36.74  E-value: 8.60e-04
                           10        20
                   ....*....|....*....|
gi 1371977096  202 EEELQLQLALAMSREEAERG 221
Cdd:smart00726   1 DEDEDLQRALELSLQEAEES 20
PHA03378 PHA03378
EBNA-3B; Provisional
 314-605 8.18e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 39.28  E-value: 8.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096 314 SPVPSGNALSRSQPWDLLPTLSSsepwgrTPVLPSGPPIADPWAPSSPTRKLPSTGADpwgasMETSDTSALGGASPFDP 393
Cdd:PHA03378  464 GPTGPLSVQAPLEPWQPLPHPQV------TPVILHQPPAQGVQAHGSMLDLLEKDDED-----MEQRVMATLLPPSPPQP 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096 394 FAKPLESTEPKESRDSAQALPTGKSPSTVELDPFGDSSPSCKQNgMKEPEALDLGVLGEALPQQPGKEARPCRTPEsflG 473
Cdd:PHA03378  533 RAGRRAPCVYTEDLDIESDEPASTEPVHDQLLPAPGLGPLQIQP-LTSPTTSQLASSAPSYAQTPWPVPHPSQTPE---P 608

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371977096 474 PSASSLVNLDSLVKAPLAARTRNPFLTGLGVPSPTNPFGagdqgRPTLNQmrtgSPALGLPPGGPVGAPVGSMTYSASLP 553
Cdd:PHA03378  609 PTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLV-----FPTPHQ----PPQVEITPYKPTWTQIGHIPYQPSPT 679

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1371977096 554 LPLSSVPVGATlPASVSVFPQAGAFAPPPASLPQPLLPTSGPMGPLPPQAGT 605
Cdd:PHA03378  680 GANTMLPIQWA-PGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAA 730
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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